>input_sequence_55799
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-----------------------------------------------ATGGAGGAGTGCCACCGGTTGGGCCTGGCGAGG
TCCGTCGGGGTGAGCAACTTCTCGGCGGCCAAGATGGAGAGGCTGCTGGCTCTCGCCGCCGTGCCGCCGGCGGTCAACCA
GGTGGAGATGAACGTCGGGTGGAGACAGGAGAAGGTGCGGGAGGTGTGCGCCCGGCACGGCGTTGTTGTCTCCGCCTACT
CGCCGCTCGGCGCGTACGGCGCCTTCTGGGGCTCCGACGCCGTCATGGAGAGCGGCGTCTTGCACGACGTCGCCGCCGCC
AGAGGCAAGACCGTCGCGCAGGTAAACATGAAAGGAAGAAACAAATGTCAATTATTGCAGTGAAGTTTATATCAGATTTT
TTTTCTAAATTAGCTTGTGTCAGATTATTTCAGTTCCTGCATAGGTTTTGTTCCTGAAGCAACCTTTTCAAGTTTGAAAA
AAATAAATTAGGCAAAGACGGGGT----AAAGCACAAATTTCATAAGAGAATCAACATAACAACTATCTAAACTTCTAAA
GACATCATCTATGAATTTCGTATGTTTTTAACATGCCGTATGAAACAATAAATTAGGCAAATACAGGGTGGGTAAACCAC
AAATTTCGTAAGAGAATCAACATAACAACTATCTAAACTTCTATTCTAGACATTAGCACACTGAATCTCGTTAGAAATCA
ATGTAAAGAAGTTTATGTTGGATCGGTAAATCTCAGTCGACTAAGACTTAACCAATGTTACACTCGTGAGATCTTATGTG
TAGATCCCCGCAAAAAAAAAATCCATTTTCTTTCTCTTTTGAATATGCCATGTCACTTGACTGAGACTTGATTAAGTCTC
AATCGATTAAGATCTAGCCACACCTTTTGCAAATTTGAATCCTAAAGATCGTTTAGAAGCGGAATAATAGATTCTATGCG
CCCAAATCCTGCAAAATCACTAAGAAACTATTTCAGTCAAAAAAGGTGCTGATGGAAAATTAAAAGATGATATATGTGTT
GATATTTTCGAACTGTAACAGAAATCAACATCGATCATGTCTTGTTGATGATGTGTACAGGTGGCGTTGAGGTGGCTATA
CGAGCAGAGCGTGTGCTTTGTGGCGAGGAGCTACAATGGTAAGAGGTTGAAGCAGAACATGGAGATCTTCGACTGGGAGT
TGGGCGAGAAGGAGAAGGGGATGATTGACACGATACCGCAGAGGAGGGCGTCTTTGGGTGAGCGTTTCATGTCGCCCGAC
GGGCCTTACAAAACACCCGAGGAGCTCTGGGACAGCGATATATGA-----------------------------------
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>chr7B_1_TraesCS7B01G268400
AAATAGATCGAAAGACTTATATTTAAGAACGGAGGGAGTACTTACTACTCCTTCCATCCCAAAATTCTTGTCTTAGATTA
GTCTAGATACGGATGTATCTAATATTAAAATGTGACTTGATACATCTGTATTTAGACAAATGTAAGACAAGAATTTTAAA
ACGGAGGAAGTAGCTAATTGTGAAAAAATAATATCACGTCTGGCCTACACGTCGCTTGGAGCCTGACATGCCGTCAGTTC
CTACTCAGCTTGGCAGATGGCAATCAGACAATCCGTGCTTGGCCAAGCAGGCAGGAGGTCTTCACCTTCTCCTGCGTTGG
GTTAGATGGAACTAAGCATCTCTCCACCGGTATAGTTGGATTAGATGAAACTAATCCACTTTAACCCTCCTTGCCTGGAT
ACTTTTAAATTATTTAAGCCCCCAACTAACCCAACCTAGCTCTAACTCCATGATCCAAACAGGCCATAGTGCTACAAGCC
-AAAACACTGGACCCAACTGCTCAACCGATCACAAAGAACTCCATCCATGATCACTGGAGCCGGCGACGACGGGCACGGC
GTTGGCGCCGGGGCAACGGCAATCCCGTCCGTGATCCTGAACACGGGCCACGCGATGCCGGTGCTGGGGTTCGGCACGGG
CTCGCCAAGCAAGCCGGCGGACCTGGCGGACACCATCGTGCACGCCGTCCGTCTCGGCTACCGCCACCTGGACACGGCGT
CCATGTACCGCACGGAGCCGGCGGTGGGCGCCGCCGTAGCCGAGTCCGTCCGCGCCGGCGCCGTGCCC------TCCCGC
ACCGACCTCTTCGTCACCTCCAAGCTCTGGATCTCCGACGCGCGCCCGGGCCGCGTCGTCCCGGCGCTCCGCGAGTCGCT
CGCCCGCCTCGGCCTAGCCTACCTTGACCTCTTCCTCGTCCACTGGCCCGTGGCCGCCACCGCCGGCGGCCTCCCGGTAG
ACAAGAGCACGCTGGTGGAGTTCTACATGGAGGGCGTGTAGCGCGGCATGGAGGAGTGCCACCGGTTGGGCCTGGCGAGG
TCCGTCGGGGTGAGCAACTTCTCGGCGGCCAAGATGGAGAGGCTGCTGGCTCTCGCCGCCGTGCCGCCGGCGGTCAACCA
GGTGGAGATGAACGTCGGGTGGAGACAGGAGAAGGTGCGGGAGGTGTGCGCCCGGCACGGCGTTGTTGTCTCCGCCTACT
CGCCGCTCGGCGCGTACGGCGCCTTCTGGGGCTCCGACGCCGTCATGGAGAGCGGCGTCTTGCACGACGTCGCCGCCGCC
AGAGGCAAGACCGTCGCGCAGGTAAACATGAAAGGAAGAAACAAATGTCAATTATTGCAGTGAAGTTTATATCAGATTTT
TTTTCTAAATTAGCTTGTGTCAGATTATTTCAGTTCCTGCATAGGTTTTGTTCCTGAAGCAACCTTTTCAAGTTTGAAAA
AAATAAATTAGGCAAAGACGGGGT----AAAGCACAAATTTCATAAGAGAATCAACATAACAACTATCTAAACTTCTAAA
GACATCATCTATGAATTTCGTATGTTTTTAACATGCCGTATGAAACAATAAATTAGGCAAATACAGGGTGGGTAAACCAC
AAATTTCGTAAGAGAATCAACATAACAACTATCTAAACTTCTATTCTAGACATTAGCACACTGAATCTCGTTAGAAATCA
ATGTAAAGAAGTTTATGTTGGATCGGTAAATCTCAGTCGACTAAGACTTAACCAATGTTACACTCGTGAGATCTTATGTG
TAGATCCCCGCAAAAAAAAAATCCATTTTCTTTCTCTTTTGAATATGCCATGTCACTTGACTGAGACTTGATTAAGTCTC
AATCGATTAAGATCTAGCCACACCTTTTGCAAATTTGAATCCTAAAGATCGTTTAGAAGCGGAATAATAGATTCTATGCG
CCCAAATCCTGCAAAATCACTAAGAAACTATTTCAGTCAAAAAAGGTGCTGATGGAAAATTAAAAGATGATATATGTGTT
GATATTTTCGAACTGTAACAGAAATCAACATCGATCATGTCTTGTTGATGATGTGTACAGGTGGCGTTGAGGTGGCTATA
CGAGCAGAGCGTGTGCTTTGTGGCGAGGAGCTACAATGGTAAGAGGTTGAAGCAGAACATGGAGATCTTCGACTGGGAGT
TGGGCGAGAAGGAGAAGGGGATGATTGACACGATACCGCAGAGGAGGGCGTCTTTGGGTGAGCGTTTCATGTCGCCCGAC
GGGCCTTACAAAACACCCGAGGAGCTCTGGGACAGCGATATATGAATATATGTACCCGGTTCGGAAATATTTGACGAGGT
TTTAGTTCAGATTTGAGGGTACAGGAGCCCAGGGCTTCCTACAGTACAGGAGCATGCCGTGCCGTCGGTCGGCCTGGACA
TGTAGTAAAGCGCTCGCCGACAGA-----GCCACCTTTGGGTCTCTGAAAGGATGTCACCGTGGGTGCCCGACGCCGCCG
CCGGACTGGAAGCATTGGATTGGACGCGACCGCCAAACTGAATAAACCTCGTCGTCTGATCGGACCCGCGCACAACGGCC
GCCGACAGGCTGATGCCGTCCAACCAAGCGCCAACCCAGCTCCTTCAGCACGACGCCCCATCAAAAAA-AAAACGGCGCC
CCATTCTTTTCCTTCTTTGAGACAAAACGCACCACG-CAAGTATTACAGCGCAACATGCAACACTATGACTTGAACAAGA
ATTTTTAAAAGCAACAAATAAAAGTAGAGCAGAAACGTAACCCCAAAACACAGTAAAGGACAAATAGTTCATCAATTTGC
TACCACTTGCCAATTGCCATAACAGCAAAAGCGTCATCACCTTTGGGCGGGCCAAAGCGCATATGCTCAACACAGGGGAA
AGGTCCTAAACTCACCACCAGACATCACAGCGCAGGAACGCAAGAGTATCAGTTACGGGGAAATTGCCTGCCTGCTACGG
TGCTCTTTGCTTCGCCAAAAGAAAACCAAGGAAAAAAAACGTCAGGCTTCATGTTTGTTAAGCCATTTGCTCTCACCTCT
CGGACCACCAAAGCAAGAAAGCAGAGT-AACAAGTCACAGGGGTTTAACCCTCTTCAGGCTTCAGGAGGTTCAGGGTCAC
TTTGGCACTTCACGCCTTCTCTCTGGTTCGACTCCACCTGCAGGAGCTAACCTGGGATGGCAGCACAACACAAGCAATTC
AGCATGCACACAAGATACGCTGATGTGAGAACGGAATATACGACAGGGAAAATGCATCATTAACTAAAATAGGAAAGTCA
AAGGCATCTTAAG
>chr7A_161
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ACGGAGGGAGTAGCTAATTGTGAAAAAATAATATCCCATATCGCCTACACGTCGCTTGGATCCTGACGTGGCGTCAGTTC
CTACTCAGCTTGGCAGACGGCAATCAGACAATCCGTGCTTGGCCAAGCAGGAGGGTGACCTCTCG-------TGCGCT--
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---------------------------------------------------------------CCATTGTGCTGCAAGTC
AAAAACACTGGACCCGACCGCTCAACCGATCACAAAGAACTCCATACATGGCCACCGGAGCCGGCGACGACGGGCACGGC
GCTGGTGCCCGGGCAACGGCGATCCCGTCCGTGATCCTGAACACTGGCCACGCCATGCCGGTGCTGGGGTTCGGCACGGG
CTCGCCAAGCAAGCCGGCGGACCTGGCGGACACCATCGTGCACGCCATCCGCCTCGGCTACCGCCACCTGGACACGGCCT
CCATGTACCGCACGGAGCCGACGGTGGGCGCCGCCGTAGCCGAGTCCGTCCGCG--------------------------
-CCGACCTCTTCGTCACCTCCAAGCTCTGGATCTCCGATGCGCGCCCGGGCCGCGTCGTCCCGGCGCTCCGCGAGTCCCT
CGCCCGCCTCGGCCTAGCCTACCTTGACCTCTTCCTCGTCCACTGGCCCGTGGCCGCCACCGCCGGCGGCCTCCCCGTGG
ACAAGGGCACGCTGGTGGAGTTCGACATGGAGGGCGTGTGGCGCGGCATGGAGGAGTGCCATCGGCTGGGCCTGGCGAGG
TCCGTCGGGGTGAGCAACTTCTCGGCGGCCAAGATGGAGAGGCTGCTGGCTCTCGCCGCCGTGCCGCCGGCGGTCAACCA
GGTTGAGATGAACGTCGGGTGGAGGCAGGAGAAGGTGCGGGAGGTGTGCGCCCGGCACGGCGTCGTCGTCGCCGCCTACT
CGCCGCTCGGCGCGTACGGCGCCTTCTGGGGCTCCGACGCCGTCATGGAGAGCGGCGTCTTGCACGACGTCGCCGCCGCG
AGAGGCAAGACCGTCGCGCAGGTAAACGTGAA------------------------------------------------
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>chr7D_173
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------------GCTGATCGTGAAAAAGCAATATCACATCTCGCCTACACGTCGCTTGGATTCTGACGTGGCGTCAGTTC
CTACTCA----GGCAGATGGCAATCAGACAATCCGTGCTTGGCTGAGCAGGCAGGAGGGCTTCCTCCTGTCCTGCGTT--
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---------------------------------------------------------------CCATTGTGCTACAAGTC
AAAAACACTGGACCCAACTGCTCAACCGATCACAAAGAACTCCATCCATGGCCACTGGAGCCGGCGACGACGGGCACGGC
GCTGGCGCCGGGGCAACGGCGATCCCGTCCGTGATCCTGAACACGGGCCACGCGATGCCGGTGCTGGGGTTCGGCACGGG
CTCGCCAAGCAAGCCGGCGGACCTGGCGAACATCATCGTGCACGCCGTCCGTCTCGGCTACCGCCACCTGGACACGGCCT
CCATGTACCGCACGGAGCCGACGGTGGGCGCCGCCGTAGCCGAGTCCGTCCGCGCCGGCGCCGTGCCC------TCCCGC
ACCGACCTCTTCGTCACCTCCAAGCTCTGGATCTCCGATGCGCGCCCGGGCCGCGTCGTCCCGGCGCTCCGCGAGTCGCT
CGCCCGCCTCGGCCTAGCCTACCTTGACCTCTTCCTCGTCCACTGGCCCGTGGCCGCCACCGCTGGCGGCCTCCCGGTAG
ACAAGAGCACGCTGGTGGAGTTCGACATGGAGGGCGTGTGGCGCGGCATGGAGGACTGCCACCGGTTGGGCCTGGCGAGG
TCCGTCGGGGTGAGCAACTTCTCGGCGGCCAAGATGGAGAGGCTGCTGGCTCTCGCCGCCGTGCCGCCGGCGGTCAACCA
GGTGGAGATGAACGTCGGGTGGAGACAGGAGAAGGTGCGGGAGGTGTGCGCCCGGCACGGCGTTGTTGTCGCCGCCTACT
CGCCGCTCGGCGCGTACGGCGGCTTCTGGGGCTCCGACGCCGTCATGGAGAGCGGCGTCTTGCACGACGTCGCCGCCGCC
AGAGGCAAGACCGTCGCGCAGGTAAACATGAAAGGAAGAAACAAATGTCAATTATTGCAGTGAAGTTTATATCAGATTTT
TTTTCTAAATTAGCTTGTGTCAGATCATTTCAGTTCCTGCATAGGTTTTGTTCCTGAAGCAACCTTTTCAAGTTTGAAAA
AA--AAATTAGGCAAAGACGGGGTGGGTAAATCACAAATTTCGTAAGAGAATCAACATAACAACTATCTAAACTTCTAAA
GACATCATCTATGAATTTCGTATGTTTTTAACATGCCGTATGAAACAATAAATTAGGCAAATACGGGGTGGGTAAACCAC
AAATTTCGTAAGAGAATCAACATAACAAGTATCTAAACTTCTATTCTGGACATTAGCACACTGAATCTCGTTAGAAATCA
ATGTAAAGAAGTTTATGTTGGATCGGTAAATCTCAATCGACTAAGACTTAACCAATGTTACACTCGTGAGATCTTACGTG
TAGATCCGCGC--AAAAAAAATCCATTTTCTTTCTCTTTTGAATATGCTATGTCACTTGACTGAGACTTGATTAAGTCTC
GATCGATTAAGATCTAGCCACACCTTTTGCAAATTTGAATCCTATAGATCGTTTAGAAGCGGAATAATAGATTCTATGCA
CCCAAACCCTGCAAAATCACTAAGAAACTATTTCAGTCAAAAAAGGTGCCGATGAAAAATTAAAAGATGATATATGTGTT
GATATTTTCGAACTGTAACAGAAATCAACATCGATCATGTCTTGTTGATGATGTGTACAGGTGGCGTTGAGGTGGCTATA
CGAGCAGAGCGTGTGCTTTGTGGCGAGGAGCTACAATGGTAAGAGGTTGAAGCAGAACATGGAGATCTTCGACTGGGAGT
TGAGCGAGGAGGAGAAGGGGATGATTGACACGATACCGCAGAGGAGGGCGTCTTTGGGTGAGCGTTTCATGTCGCCCGAC
GGGCCTTACAAAACACCCGAGGAGCTCTGGGACAGCGATATATGAATATATGTACCCGGTTCCGAAATATTTGACGTGGT
TTTAGTTCAGATTTGAGGGTACAGGAGCCCAGGGCTTCCTACAGTACAGGAGCATGCCGTGCCGTCGGTCGGCCTGGGCA
T---GTAAAGCGCTCGCCGACAGAGCAGCGCCACCTTTGGGTCTCTGAAAGGATGTCACCGTGGGTT-CCGACGCCGCTG
CCGGACTGGAAGCATTGGATTGGACGCGACCGCCAAACTGAATAAACCTCGTCGTCTGATCGGACCCGCGCACAACGGCC
GCCGACAGGCTGATGCCTTCCAACCAAGCGCCAACCCAGCTCCTTCAGCACGACGCCCCCTCAAAAAAAAAAATGGCGCC
CCATTTTTTTCCTTCTTTGAGACAAAACGCGCCACGCCAAGTATTACAGCGCAACATGCAACACTATGACTTGAACAAGA
AATTTTAAAAGCAACAAATAAAAGTAGAGCAGAAACGTAACCCCGAAACACAGTAAAGGACAAGTAGTTCATCAATTTGC
TACCACTTGCCAATTGCCATAACAGCAAAAGCGTCATCACCTTTGGGCGGGCCAAAGCGCATATGCTCAACACAGGGGAA
AGGTCCTAAACTCACCACCAGACAAAACAGCGCAGGAACGCAAGAGTATCAGTTTCGGGGAAATTGCCTGCCAGCTACGG
TGCTCTTTGCTTCGCCAAAAGAAAAAGAAGGGGAAAAAACGCCAGGCTTCATGTTTGTTAAGCCATTTGCTCTCACCTCT
CGGACCACCAAAGCAAGAAAGCAAAGCAAACAAGTCACAGGGGTTTTCCCTTCTTCAGGCTTCAGGAGGTTCAGGGTCAC
TTTGGCACTTCACGCCTTCTCTCTGGTTCGACTCCACCTGCAGGAGCTAACCTGGGATGGCAGCACAACACAAGCAATTC
AGCATGCACACAAGATACGATGATGTGAGAACGGAACATACGACAGGGAAAATGCATTATTAACTCAAATAGGAAAGTCA
AAGGCATCTTAAG
>chr2D_575
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---------------ACGGCGATCCCGTGCGTGACCCTGAACACGGGCCACGAGATGCCGGTGCTGGGCTTCGGCACCGG
CTCCTCGCGCGTGCCCGCCGACCTGCCGGACACCATCGTGCACGCCGTCCGCCTCGGCTACCGCCACCTCGACACGGCCG
CCATGTACGGCACGGAGCCGGCCGTGGGCGCAGCCGTCGCCGAGGCCGTCCGCTCAGGCGCCGGCGGGATCTCCTCGCGC
GAGGACCTCTTCGTCACCTCCAAGCTCGGGATCCCCAACGCGCGCCCGGGCCGCGTCGTCCCGGCGCTCCGCGAGTCCCT
CGCCCGCCTCGGCCTCGACTACCTGGACCTCTTCCTCGTCCACTGGCCCGTCGCCGCCGACAA---------CCCGGCGG
ACAAGGCCACGCTGGCGGAGTTCGACATGGAGGGCGTGTGGCGCGGCATGGAGGAGTGCCGCCGCCTGGGCCTGGCGCGC
TCCGTCGGCGTCAGCAACTTCTCGGCCGCCAAGATGGAGCGGCTGCTGGCGCTGGCCGCGGTGCCGCCGGCCGTGAACCA
GGTGGAGCTGAACGTGGGGTGGAGGCAGGAGAAGGTGCGGGAGGTGTGCGCGAGGCACGGCGTGGTCGTCTCCGCCTACT
CGCCGCTGGGCGCGTACGGCGCCTCCTGGGGCTCGGACGCCGTCATGCACAGCGGCGTCATGCACCACGTCGCCGCCGCC
AAAGCCAAGACCGTGGCCCAGGTA--------------------------------------------------------
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>chr2B_575
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---------------ACGGCGATCCCGTGCGTCACCCTCAACACGGGCCACGCCATGCCGGTGCTGGGCTTCGGCACCGG
CGCCTCGCGCGCGCCCGCCGACCTGCCAGACACCATCCTGCACGCCGTCCGCCTCGGCTACCGCCACCTCGACACGGCCG
CCATGTACGGCACCGAGCCGGCCGTGGGGGCCGCCGTCGCCGAGGCCGTGCGCTCCGGCGCCGTGCGG------TCGCGC
GAGGACCTCTTCGTCACCTCCAAGCTCTGGATCCCCGACGCGCGCCCGGGCCGCGTCGTGCCCGCGCTCCGCGACTCCCT
CGCCCGCCTCGGCCTCGCCTACCTCGACCTCTTCCTCGTCCACTGGCCCGTCGCCGCCGACGA---------CCCCGCGG
ACAAGGCCACGCACGCGGAGTTCGACATGGAGGGCGTGTGGCGCGGCATGGAGGAGTGCCGCCGCCTCGGCCTGGCGCGC
TCCGTCGGCGTCAGCAACTTCTCGGCCGCCAAGATGGAGCGCCTGCTGGCGCTCGCCGCCGTGCCGCCGGCCGTCAACCA
GGTGGAGCTCAACGTGGGGTGGAGGCAGGACAGGGTGCGGGAGGTGTGCGCGCGGCACGGCGTCGTCGTCTCCGCCTACT
CGCCGCTGGGCGCGTACGGCGCGTCATGGGGCTCGGACGCCGTCATGAACAGCGGCGTCATGCACCACGTCGCCGCCGCC
AAAGCCAAGACCGTGGCCCAGGTAA-------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
-------S-----------------------------S---S------------------S------S--S---------
----------------------------------------------------------S----SS-S-S---------SS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S----------S-
--------------------------------------------------SS----------------------------
-S------------------S-----------------------------------------------------------
------------------------------------------------------------------------------S-
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-----------------------S---------------S----------------------------------------
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-------------------------S------------------------------------------------------
--SS---------------------------S----------S-------------------------------------
----------------------------------------------------------------S---------------
----------------------------S------------------S--------------------------------
-----------------------------------S----------------------------------------S---
-------S---SS-----------------------------------S-------------------------------
S-------------------------------------------S----------------------------------S
------S------------------------------------------S----S-------------------------
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--S-----S-----------------------------------------------------------------------
--------------------------------------------------------------S-------------S---
-----------------------------------------------------------------------------S--
-SSS--------------------------------------------------------------SS----------S-
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-----------------S-----------------------------------------S-------------S------
-----S------------------------S-------------------------------------------------
-S------------------------------------------S------------------S----------------
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------------------------SS----------------------------S-----------------S-------
-------------------------SS----SS--------S--------------------------------------
-----------------------S--S-------------------SS--S-----------------------------
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-------------------S----------------S--------------------S-------S--------------
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>forward_403
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---------------------------------------------------------------ACCCTCCTTGCCTGGAT
ACT-----------------------------------------------------------------------------
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>reverse_2163
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--GGCGAGAAGGAGAAGGGGAT----------------------------------------------------------
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>forward_435
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---------------AAGCCCCCAACTAACCCAAC---------------------------------------------
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>reverse_2402
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-GTAGTAAAGCGCTCGCCGA------------------------------------------------------------
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