>input_sequence_55792
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-------------------------------G-AAAGAGAATATATCTCACCAT-CTAGAAAGAGAGAAACAAAGAGATG
AGGAACCAGAGGCTAGCTCCTATCACTTGCTCCTCTTCAAAGACCAACAACACGAAGCGAGAGGAGCCACACCTCTCAGG
GGCTTACATTAGGAGCCTTGTGAAGCATCTTAGCTCCACATCTACGGCGAGATCCAAAGACCACCATCACATCGCCATGG
GCACCAAATCGCACCAAGAAGAGCAACAAGCCCCACAAACCACACCACCATCTCTACAGCAGCAGCAGC---CACACAAG
AAGCAGGTGAGGAGGAGGCTCCACACGAGCAGGCCATTCCAGGAGAGGCTACTCAACATGGCGGAGGCGAGGCGAGAGAT
CGTTACCGCTCTCAAGATCCACAGAGCATCCATGAGAGAAGCCAAGGAGCAGCAGCAACATCAACAACTTGTGCAACAAT
TGCAGCATCAGCAAGAGGTCCAGGTAGTGCAAGATCATAGGGTGGCTTTTAGTGCACCCAGCATGAGCTCATATAGTTCT
TTCTCAGATTACTTGCACAGCAGTTCCCCATTCGCACACACCACAGCAACAAGCAACAGTGGTTCCTCATATTATTCATC
TCCTCCACTTCTCCCTTACCACACACCAGTAGTTGCACCCATGGTTCCCATGGTAGATGCCTTAGATCAGTTTCTGCCGC
TGCCTACGCAGCCACTAGGGCTCAACCTCACCTTCGATGGCTTT---GGTGGTGGTGTTGCTGCCGAAGATGCCAAGAAC
TGCACTGCTACTGGCCCCTTTGATCCTCCTTCGTTGGTCCAACAAGCATCACCCGCCTCCTCCTACTCTGTCTACTCCTC
TCCGCCGCCGGCAACGATGGTGAGCCAGGACATGGCATCCGTTGCTGCCGAGAACACCTCACAGTCGTTGCACCGGGTGC
TGGACGAGGAGGAGATGGCCGCGATCCACTCGGCCGGGGAGCGGCATGACATCGAGTGGAGCGACACTGTGAACCTGGCC
ACGTCGGCGTGGTGGAGCAGGCTACTCGAGAGTGTGGAAGG------------C------------GACGGGGCCACGGC
GGCGCAGCAAGCTAACACGGTGGACGCCATGGGGATGCATCTGAGTGATGAGTACTACGGCCAAGACGTGTCCTTTCCAT
GGTAAGCTAGCTATAGTGAGGCCCCAAACT--------------AAATTAAGGTGC-AAAAGTTGTCTAATAATGAGGG-
-----------GGTGTTT--------TTTTTTGC----------------------------------------------
--------------------------------------------------------AGTATGGACATCGGAGAGATCAAA
GGATGGGACGCCCAGTGGTTATCATGACATGCCG----------------------------------------------
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----------------------------------------------------------------
>chr4A_1_TraesCS4A01G353800
GTCAGTTTTCTGCAGCAGAACAAAGGAGTTGGCCATATTTGAAACGACCG------------------------------
-GCATGTATTTGACTTGCTTTGCGTCCACGTGCTA----ATGCATGTAC--------------------TCCTTGTGCAA
ATGTTTGTAGCTACTACATGCATGCTA-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GATGCATGTTCTGGTCTACCTGCAATAATAAAAA-TAAATGCATGTTCTT
TTTTTTGCGGGAAAATATGCCTG---------GATGT-AAATTTTCTTCTCCTTGTTCCAACAGTCGTACTACAACTTCC
AGAAGGCAA--------TGTAAGCAAATTGAGTTGGTATGTTTGAATTTTTGTTGTGTTTTTGCTGAATTAAAGCGACTT
AAGATATTATTTATGTTTATAGTAGATGTCCCGAAGAGCTGTATACCCTGACCATTTTGACAAAAGAAAATCTTATACAA
CTCCCTCCATTCCTAAATGTAAGTCTTTTTAGAGATTCCACTATAAATTACATACGGATGTATATAGACATATTTTAGAG
TGTAAATTCACTCATTTTTCTCCGTATGTAGTCCATAGTGGAATCTCTAAAAAAACTTATATTTATGAACGGAGGGAA--
-TACTAAACTTGCATGTACCTGGACCATTTTTGTTC--------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------TGGCAATGTTAAAGCACCAATGT
TGTAAT--------------------------------------------------------------------------
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---------------------------------------------------ATCATTGTCCTGCAACGTTAGCATACCTC
TTTGACCTTGAATGCCAGGACATATTACACATTTATCCCTTTGATGTGGGGTAGACTTTCCCTAGACTTGTGTAAGAGTC
AATG-TATTCAAGTACCAAAACGATGACCCACAGTTGTGGGTGCTGCCTTCTCTAGCTACACTATATGCCAACCTACCTA
GCTAC----CATGCATATGCATGACATGCATTGCCAAAGGGATGGCATGGCATACTAACAATCTGCAAATGCTTTTTCTT
AGTACCAGCATACTAACAATCTGCAAATGCTTTTTCTTAGTACCACTCTATATATATCAACCCCATCTCCCTCCCCCTAC
CTTCCCATACCCCTCCATGTCCCCTTAGCAAG-AAAGAGAATATATCTCACCAT-CTAGAAAGAGAGAAACAAAGAGATG
AGGAACCAGAGGCTAGCTCCTATCACTTGCTCCTCTTCAAAGACCAACAACACGAAGCGAGAGGAGCCACACCTCTCAGG
GGCTTACATTAGGAGCCTTGTGAAGCATCTTAGCTCCACATCTACGGCGAGATCCAAAGACCACCATCACATCGCCATGG
GCACCAAATCGCACCAAGAAGAGCAACAAGCCCCACAAACCACACCACCATCTCTACAGCAGCAGCAGC---CACACAAG
AAGCAGGTGAGGAGGAGGCTCCACACGAGCAGGCCATTCCAGGAGAGGCTACTCAACATGGCGGAGGCGAGGCGAGAGAT
CGTTACCGCTCTCAAGATCCACAGAGCATCCATGAGAGAAGCCAAGGAGCAGCAGCAACATCAACAACTTGTGCAACAAT
TGCAGCATCAGCAAGAGGTCCAGGTAGTGCAAGATCATAGGGTGGCTTTTAGTGCACCCAGCATGAGCTCATATAGTTCT
TTCTCAGATTACTTGCACAGCAGTTCCCCATTCGCACACACCACAGCAACAAGCAACAGTGGTTCCTCATATTATTCATC
TCCTCCACTTCTCCCTTACCACACACCAGTAGTTGCACCCATGGTTCCCATGGTAGATGCCTTAGATCAGTTTCTGCCGC
TGCCTACGCAGCCACTAGGGCTCAACCTCACCTTCGATGGCTTT---GGTGGTGGTGTTGCTGCCGAAGATGCCAAGAAC
TGCACTGCTACTGGCCCCTTTGATCCTCCTTCGTTGGTCCAACAAGCATCACCCGCCTCCTCCTACTCTGTCTACTCCTC
TCCGCCGCCGGCAACGATGGTGAGCCAGGACATGGCATCCGTTGCTGCCGAGAACACCTCACAGTCGTTGCACCGGGTGC
TGGACGAGGAGGAGATGGCCGCGATCCACTCGGCCGGGGAGCGGCATGACATCGAGTGGAGCGACACTGTGAACCTGGCC
ACGTCGGCGTGGTGGAGCAGGCTACTCGAGAGTGTGGAAGG------------C------------GACGGGGCCACGGC
GGCGCAGCAAGCTAACACGGTGGACGCCATGGGGATGCATCTGAGTGATGAGTACTACGGCCAAGACGTGTCCTTTCCAT
GGTAAGCTAGCTATAGTGAGGCCCCAAACT--------------AAATTAAGGTGC-AAAAGTTGTCTAATAATGAGGG-
-----------GGTGTTT--------TTTTTTGC----------------------------------------------
--------------------------------------------------------AGTATGGACATCGGAGAGATCAAA
GGATGGGACGCCCAGTGGTTATCATGACATGCCGTCCATCATATCTTAGGGGAGAATTAACACTTGAACATTTCACTGTA
CTCCCTCCGCTCCTAAATATAAGTCTTTTTAGATTTCAAATGGACTACAACATGCGGATGTATGTAGACATATTTTAGAG
TGTAGATTCACTCATTTTGCTCCGTATGTAGTCACTTGTTGGAATCTCTAGAAAGACTTATATTTGGGAACGGAGGGAGT
ACCTCGAATAATGGAAATTAACGCTCCATTTCATCACAAGTATAGTATGCAGCAGTTACTCCTATTCGGATTGCAAATAC
TTTTGCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCGTGGATGCAAAATGCTTTCTT
TCCTGCATGTTCTGGGT-AACTTTTGGATCTCTACAATTTCTGTTTTTGCTATGACTTTGCCGTAGTTTGGTAGGATCCT
--CAC----CGAACAACTAGTTAGCTAGGTCCGCAGGGACTGATGCACGGATCTGTATGCTAATGTGTGCATATTATGAT
CAATGCAAGAATTGACCACTCTAGCCGGCACTCAGCTAGAGATCTACTA---CTAGGATTCATGCAAATTTCTCGACTTT
ACTGCAACGAATCGAAGTTACTAC------TTTGAGCCCAAACATAAGATACTACCTC---CATGCATAGAGCCTAGAGG
AGCAGACTGGCAGTCACAAATATTGGTCTTAGCCTGACAC-GTATGCATGCTTCAACGGACAAGTGTGAGCTGTTAAACA
TTGCAATTGTAATCTGTTAGCTAGGGCGTGGTGTGTGCGTTGTAATCTGTTAGGGTAGGTTAGGTTGTTGTGATATGATC
CTATAGTTAGCTTGGAGATCAATCGACACCTCACCTAAACCCTAACCCCCTGTAAGCCGCCGGCCTCTGGCCCTTTATTA
ACACGCAACGCGCCCCTGCACCGTGCATGTGCTTCCAGCTACTTTCACATGGTATACAGAGCCTAGTTCTTCCATCTCAT
CTAGGTTATGTCATCTTCCTCCTCCTCCCTCGCCATGGCCATGCCTTCGCTTGCTTCGCTCGGC
>chr4A_1
GTCAGTTGTGTAAAGCAGAACAAAGGAGTTGGCCATATTTGAAACTGCCCGTCTCTATACATGCATGCATTTGTG-----
-------------CTTGCTGTGCGTCCACGTACTTGCAGATGCATGTATTGTACTTG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CTTGCCATATACTACG-GACAGGCATGTTCTC
TTGTTGATGGATA-----------------------------TTTCCTTTTCCCATACCCATAGTCCTAATACAATTTGC
ACAAAAATTATGAACATAATGA----------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------AAAAAATACATTTGCTAATTATCAGTTGGCTGA
AAAC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------CGGACGACGCAGCCGC
CTGCAG--------------------------------------------------------------------------
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---------------------------------------------CGTCCCCAGCCAAGCCAAGCCAGGACC--------
--------------------------------------------------------------------------------
------------TCTCGAGAGACGGGGACAATGCGGTTCGACAGAGCCCAAGATCAGTGTGGGGATGCCATGTCCTGTCA
TGGCATCGCCGAGGGCTCTAACATGACCTCGCCGGAGGTGAGGGAGGGATGGGGCGTGGGCGTTGGGCATGTATACTCCT
AATTTGCAAGGAAATGGAACACTCCTAATTGGAGATGTGGCCGGTGTTGCTACTTGAAGACAGGATGATGAGAGGCTGCT
GCTGTCCAAGAACCGCTACCGCCGTCTTCGCTCACAAGTCACGAACGCCGTTGCCGTCGCCCTCGATCAGCAGTTGGTGG
GAAACTAGTGATGAGTTGGCTAGGTTAGGCTGTATGCGTTGTTGTATGGGCCCTTGGATGCCTTGCGTCTGGAAGAGAGA
GAGTGAGAGTGAGTTGGGCCGATGCAGCGATGCCTGATGGACTGCTGTGTGGTACATGCAAAAACACTACAATGTTATTT
TGTTTAGCGTCGGAATAGCGCAGTATAACACGAATAGCGCCGTGGCGAGCAAATTAGCTACGTAACATGACTCTTCTAGA
CACGCTATAACGTCGAGATAACGCGCTATTTTGTTGTTGATATTTGCACAAGGGTGGGATAATTAATA------------
----------TTAGATCAAATTGTTGGCACCATGTACTTTGATATAAGAAATTCTCAGTCAAATTATATACAGACAGAAC
CTTTTTGTGGTCGCTATATTATTAAACAGCGTTGTCCTT-----------------------------------------
--------------------------------------------------------------------------------
------------------------------ATATATCCCTGAGATGTGGGGGAGACTTTCTCTAGACATGGGTATGAGTC
AATGTTCTTCAAGTACCAAAACGATGACCCACAGTGGT--GTGCTGCTAGTTCTAGCTACACTATCTGCCAACCTACCTA
CTATCTTAAGACCAT-----ATGACATGCATTGCCAAGAGGATAACATGGCATCCTAACAAACTACACATGACTTTTCTT
---------------------------------------GTACCACCCTATATATATCATCCCCATCACCCTCTCCCTAC
CCTCCCATACGCCT-GCTGTTCCCTTAGCAAG-AAAGAGAATCTATCTCACCAAGCTAGAAAGAGAGAAGCAAAGAGATG
AGGAACCAGCGGCTAGCTCCTACCACTTGCTCCTCCTCAAAGATCAACAACAGAAAGCAAGAAGAGCCACACCTCTCCGG
GGCTTACATTAGGAGCCTTGTGAAACATCTTAGCTCCTCCTCCACAACGAGACCCAAAGACCACC---ACATCACCATGG
GCACCAAGCCGCAGCAAGAAGAGCAACATGCGCCCCAAACCACACCACCATCTCTACAGCAGCAGCAGCAGCCACACAAG
AAGCAGGTGAGGAGGAGGCTGCACACAAGCAGGCCATACCAGGAGAGGCTACTCAACATGGCCGAGGCCAGGCGAGAGAT
CGTCTCGGCTCTCAAGATCCACAGAGCCTCCATGAAGGAAGCCAAGGAGCAGCAGCAACATCAACAACTGGTGCAAGAAT
TTCAACATCAGCAGGAGGTCCAGGTAGTGCAAGATCATAGGCTAGCTTGTAGTGCACCCAGCATGAGCTCATATGGTTCC
TTCTCAGATTAC---------------CCATTTGCACACTCCACGGAAACA---AACAGTAGTTGCTCATATTATTCATC
C---CCACTCCTCCCTTACCACACACCAGCAGCTGCACCCATGGTTCCCATGGTTGATGCTCTAGACCAGTTGCTGCCGC
TGCCTACGCAGCCACTTGGGCTTAACCTGAGCTTCCATGGCTTCGGCGGCGGGGGAGTTGCTGGTGAAGATGCCAAGAAC
AACACCGCTTCTAACTCCTTTGATCCTCCTCCGTTGCTCCAACAACCCTCGCCTGCCTCCTCCTACTCGGTCTACTCCTC
TCCGCCGGCGACGACGATGGCGAGCCAGGACGTGGCGTCCGCCACCGTCGAGAACACTTCACCATCGCTACACCGGGTGC
TGGATGAGGAGGAGATGGCGGCGATCTACTCGGTTGGGGAGCGGCACGACATCGAGTGGAGCGACACACTGAACCTGGCC
ACGTCGGCGTGGTGGAGCACACTCCTCGA------------------------C------------GACGGCGCTGCGGT
GGGTCACCAGACAGACTCAGTGGACATCCCGGGGATGCATCTGGGTGATGTGTACTACGGCGAAGACGTCTCCTTCCCAC
GGTAAGCTAGCTAGACTGAGGCAACGTAG----TTGTTATACCAAAATTAAGGTGCAAAAAATTGTTTAATAATCGGGGA
TGTTGATGTTTGGTTTTG--------GTTTTTGC----------------------------------------------
--------------------------------------------------------AGCATGGAGATAGGAGAGATGGGG
GGATGGGACGAGGAGTGGCTCTCATGACATGTCGTCCA------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------
>chr5B_1
GTCAGTTTT-TGCAGCAGGACAAAGGAGTTGGCCATATTTGAAACGACC-------------------------------
AGCATGTATTTGACTTCCTTTGCGTCCACGTGCTA----ATGCATGTATTATACTTGGCTTTGCATATGTCCATGTGCAA
ATGTTTATGGCTACTACATGCATGCTACTCCCTCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAGTAATTACA
TACGGAGCAAAATGAGTGAATCTACACTCTAAAATATGTCTATATACATCCGTATGCGATAGTTCATTTGAAATCTCTAA
AAAGACAAATATTTAGGAACGAAGGGAGTAGATGCATGTTCTGGTCTCCCCGCAAAAATAAAAAATAAAAGCATGATCTT
ATTTTTTAGGAAAAAATGCATGTTCGGGTTTTGATGT-AAATTTTCTTCTCCTTGTTCCAACAGTCGTACTAGAACTTCC
AGAAGAAAAAAAGGCAGTGTAAGCAAATTGAGTTGATATGTTTGAATTTTTGTTGTGGTTTTGCTGAATAAAAGTGACTT
AAAATATTATTTATGTTTATGGTACATGTCCCGAAGAGCCGTATGCCCTGACCATTTTGACGTAAGAAATCTTAT----A
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
CTAGTAAACTTGTATGTACCTGCACCATTTTTATTTTTTT--TTCTTTTGAAACGAGGCAAAAGACTTGTCATTTTTATT
AATTAAGAAGAACAGAATTGCCCGGTTAATTAACGGAAAATCGGGCTAAAACCGATACAGCCCAATTCATATGACATGGG
TACCTCCGGCCAACCTGGCCACCGACATGAAACACGAAGCTGCAAAGAAGAAAGACATCCGCCGAGGAGTCGCGAGCATC
ATCGTCATCATCGGTTGCCTCGAACGGGCGACTCCGACTTCATCGTAGAGCTCCATCATCGAAGCCACCCACAAACAGCT
GTCGAAACCATGGCGGCACATGCCAACAAATGGCCATACGCGCAAGCGACCGACAGCTCCGACTTTGACGACGAGCGTCG
CAAGGGAAATATGCAGGACTTGAGCCGAACGTTCCTCCGCAAACCACTGAAGAGCACCTTGGACACACCGGGAAGAGCCG
ACTACCGAAGTCCAAGCCGCGACCCAAGCTCCTCGCGACGCCATCATCGTTGCCAAACAGAAACCAATGCCCCGCCTCAG
CAAACCACGCAGCGAAGATGCCGCCCATCCACGGCGAAGATGCCGCCTTCCACCGGTCTCCCAGTCATAGCCGGCTCCGA
GACGATGCCCCCAAGGAGGAGAAAGACACGAAGATGCCTCCATCGCCCGATCCAGCGGATCTGAGGTTTCCCTCCGGAGC
CAAAGCCGTGTGGAGGAGGAGCACACCTCCACGGTGATGCTTTCGAGAAAGATCATGGCACTCGCGGGCGCGT-CGTCGC
CGGCTCCGAAGAGGACCGGAGCAAGGATTTCTCCAGGAGATGACCACCTACAGCCACCGACCGCCGCCCATCGACCACCA
CCTGTGAGGCCGACCTCACTCCGGCCACGAGATCCCACGATCCACCATGACCAGACACACTCACCACCTCCCTGGCCGTA
GCCGCCGTCCACCACCGCAGCACCACCGCGAGCACCACTGCGAGCACCACCACCGCAGCCACCAAAGCCGCAACGCGA-A
GTGCGGCACCTAGATTGAAGAGCTAGTTCACACTAGATCCAGATCGGAGCCGCACCAACAGAGC-AGCAGCGCAGACGAT
CAGCTCCTCCATCGGCAGCGCACCTCGCGCTCTAGAGCAGCACACTCGCCACGCCCGCCGCGCGCGAGCTGCTGCCGCGC
CCCACACACGCATCCGGAACCGAGCGCCGCTGCGCGCACACACGCCGTCCACGCCCAAGCCACCCTCGATCCCGGACTGA
GGCCGCCGCACCGGAGTCCCATCCGCCACCCGCAGCCGACGCTAGCACCACATGCCGCCCGCCATCCGTCGCCCTCCGCT
GCGAGCTCCCCCTCGCGAGAGACGGCACGGGAAGAAGAGGTCCCGCCGCCACCGGGTCCGCGCGGGCTTCGCCCGGCGGA
GCCCCCCGGCAACAGC------------------GAGGGGAGGGGAGCGAGGAGGGGGAGCGGTGGAAGGAGACTGCGCC
GCAGCCCGTGTCGCCCTGGGGAGGGAGCCACGCGAGGGCTGGATACCATTTTTATTGTCGTAATGTTGAACAGCCAATGT
TGCAAT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATCATTGTCCTCCAACGTTAGCATACCTC
TTTGACCTTGAATGCCAAGACATATTACACATTTATCCCTTTGATGTGGGGTAGACTTTCCCTAGACTTGTGTAAGAGTC
AATGCTATTCAAGTACCAAAACGATGACCCACAGTTGTGGGTGCTGCCTTCTCTAGCTACACTATATGCCAACCTACCTA
GCTACCATGCATGCATATGCATGACATGCATTGCCAAAGGGATAGCATGGCATCCTAACAATCTGCAAATGCTTTAATCC
--------------------------------------AGTACCACTCTATATATATCATCCCCATCTCCCTCCCCCTAC
CTTCCCATACCCCTCCATGTTCCCTTAGGAAG-GAAGAGAATCTATCTCACCAT-CTAGAAAGAGAGAAACAAAGAGATG
AGGAACCAGAGGCTAGCTCCTATCACTTGCTCCTCTTCAAAGACCAACAACACCAAGCGAGAGGAGCCACACCTCTCCGG
GGCTTACATTAGGAGCCTTGTGAAGCATCTTAGCTCCTCATCTACGGCGAGATCCAAAGACCACCATCACATCACCATGG
GCTCCAAATCACACCAAGAAGAGCAACAAGCCCCACAAACCACACCATCATCTCTA---CAGCAACAGCAGCCACACAAG
AAGCAGGTGAGGAGGAGGCTCCACACGAGCAGGCCATATCAGGAGAGGCTACTCAACATGGCGGAGGCCAGGCGAGAGAT
CGTCACCGCTCTCAAGATCCACAGAGCCTCCATGAGAGAAGCCAAGGAGCAGCAGCAGCATCAACAACTTGTGCAACAAT
TGCAGCATCAGCAAGAAGTCCAGGTAGTGCAAGATCATAGGGTAGCTTTTAGTGCACCCAACATGAGCTCATATGGTTCC
TTCTCAGATTACTTGCACAATAGTTACCCATTCGAACACTCCACAGCACCAAGCAACAGTGGTTGCTCATATTATTCATC
TCCTCCACTCCTCCCTTACCACACACCAGTCGTTGCACCCATGGTTCCCATGGTAGATGCTTTAGATCAGTTGCTGTCGC
TGCCTACGCAGCCACTAGGGCTCAACCTGACATTCGATGGCTTC---AATGGTGGTGTTGCTGCCGAAGATGCCAAGAAC
TGCACTGCTACTAGCCCCTTTGATCCTCCTTCGTTGGTCCAACAACCATCACCTGCCTCCTCCTACTCTGTCTACTCCTC
TCCACCGCTGGCGACGATGGTGAGCCAGGACATGGCGTCCGCTGCTGCCGAGAACACCTCACAGTTGCTGCACCGGGTGC
TGGACGAGGAGGAGATGGCGGCGATCCACTCGGCCGGGGAGCGGCATGACATCGAGTGGAGCGACACCGTGAACCTGGCC
ACGTCGGCGTGGTGGAGCAGGCTACTCGAGAGTGTGGAAGG------------CGGTGAAGACGATGATGGGGCCGCGGC
GGCGCAGCAGACTAACACGGTGGACGCCATGGGGATGCATCTGAGTGATGAGTGCTACGGCCAAGACGTGTCCTTTCCAT
GGTAAGCTAGCTATAGTGAGGCCCCAAATT--------------AAGTTAAGGTGCAAAAAGTTGTCTAATAATGAGGG-
-----------GGTGTTAATTTTTGATTTTTTGC----------------------------------------------
--------------------------------------------------------AGTATGGACATCGGAGAGATCGAA
GGATGGGACGCCGAGTGGTTCTCATGACATGCCGTCCATCATATTTTAGGGGAGAATTAACAGTTCATCATTTCACTGTA
CCTCAAATAAT---------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TGGAAATTAACG-----------------------------------CTCCTATTCAGATTGCAAATAC
TTTTGCTGCGTGGATGCAAACTGTTTTCTTCTTGCATGTGTTCTTTTCTGGGTAACTTTTGGATGTCTATAATTTATGTG
TTTGCTAGTATGACTTTATACCATACTTCTGTAGAATCTCGTCACGGAACGACTAGGTA-----TCTATGTCTGCAGGGA
CCGATGCATGCATCTGTGCTAATGTGTGCATATATTCAGATTGCAAATAATTTTGCTTCGTGGATGCAAAATGTTTTCTT
TTCTGCATGTTCTGGGTTAACTTTTGGATCTCTACAATTTCTGTTTTTGCTATGACTTTACCTTAGTTTGGTAGGATCCT
GCCAC----CGAACAACTAGCTAGCTAGGTCTGCAGGGACTGATGCATGCATCTGTGTGCTAATGTGTGCATATTATGAT
CAATGCAAGGATTGTCCACTCTAGCCGGCACTCAGCTAGAGATCTACTA---CTAGGATTCATGCAAATTTCTCGACTTT
ACTGCAACGAATCGAAGTTACAA-------TTTGAGCCCAAACATAAGATACTACCTC---CATGCATAGACCCTAGAGG
AGCAGACTGGCAGTCACAAATATTGGTCTTAGCCTGACATTGTATGCATGCTTCAGCGGAGAAGTGTGAGCTG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>chr5D_1
GTCAGTTTTCTGCAGCAGAACAAAGGAGTTGGCAATATTTGAAACGACCAGCATGTATTTGACTTAACGTAAAAAAAAAA
AGCATGTATTTGACTTGCTTTGCGTCCACGTGCTA----ATGCATGTATTATACTTGGCTTTGCATATATCCATGTGCAA
ATGTTTATGGCTACTGCATGCATGCTACATT-------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CATGTTCTGGTCTCCCCGCAAAAATAAAAA-TAAAAGTATGTTCTT
TTTTTCG-GGAAAAAATGCATGTTCGGGTTTTGATGTAAAATTTTCTTCTCCTTGTTCCAACAGTCGTACTAGAACTTCC
AGAAGAAAAAAAGGCAGTGTAAGCAAACTGAGTTGGTATGTTTGAATTTTTGTTGTGGTTTTGCTGAATAAAAGTGACTT
AAGATATTATTTATGTTTATGGTACATGTCCCGAAGAGCCGTATGCCCTGACCATTTTGACGTAAGAAATCTTAT----A
CTCCCTCCGTAAAGAAATATAAGAGTGTCTAGATCACTACTTTAGTGA--------------------------------
---------------------------------------------TCTAGACACTTTTATATTTCTTTACGGAGGGAGTA
CTAGTAAACTTGTATGTACCTGGACCATTTGTATTGTTGTTCTTTTTCTGAAACGAGGCAAAAGACTTGTCATTTTCATT
GATTAAGAAGAAGAGAATTACCCGATTAATTAACGGAAAACTGGGCTAAAACCAATACAACCTAACCCATATGACATGGG
TACCTCCGGCCAACCTGGCCACCGACATGGAACACGAAGCTGCAAAGAAAAAAGACATCTGCCGAGGAGTCGCAAGCGTC
ATCGTCATCACCGGTTGCCTCGAACGGGCGACTCCGACTTCATCGTAGAGCTCCATCATCGAAGCCACCCACAAACAGCT
GCAGAAACCATGGCGGCACATGCCAACAAATGGCAACACGCGCAAGCGACCGACAGCTCCGACTTTGACGACGAGCATCG
CAAGGGAAATATGCAGGACTTGCGCCGAACGTGCCTCCGCAAACCACGAAACAGCACCTCGGACACACCGGGAAGAGCCG
ACTACCGAAGTCCACGCCGCGACCCAAGCTCCTTGCGACGCCATCATCGTTGCCAAACAGAAACCAACGCCCCGCCTCAG
CAAACCACGCAGCGAAGATGCCGCCCATCCATGGCGAAGATGTCGCCTTCCACCGGTCTCCCAGTCATAGCCGGCTCCGA
GACGATGCCCCCAAGGAGGAGAAAGACACGAAGATGCCTCCATCGCCTGATCCAACGGATCTGAGGTTTCCCTTCAGAGC
CAAAGCCGTGCGGAGGAGGCGGACACCTCCATGGTGACGCTTCCAGGAAAGATCACGGCACCCGCGGGCGCCGCCGTCGC
CGGCTCCGAAGAGGACAGGGACAAGGATTTCTCCAGGAGATGACCACCTACAGCCACCGACCGCCGCCCATCGACCACCA
CCTGCGAGGCCGACCTCACTCCGGCCATGGGATCCCATGATCCCCCGTGACCAGACACACTCACCACCTCCCTGGCCGTA
GCCGCCGTCCACCACCGCAGCACCACCGCGAC------------CACCACCACCACAGCCACCAAAGCCGCAGCGTGAAA
GTGCGGCACCCAGATCGAAGAGCTAGTTCACACCAGATCTGGATCGAAGCCACACCAACAGAGCAAGCAGCGCAGACGAG
CAGCTCCTCCATCTGCAGCACACCTCGCGCTCCAGAGCAGCACAGCCGCCACGCCCACCGCGCGCGAGCCGCTGCCGCGC
CCCACGCACGC----------------------------------CGTCCACGCCCAAGCCACGCCAGATCCCGGACCGA
GGCCGCTGG-CCGGAGTCCCATCCGTTGCCCGCAGCCGACGCCAGCACCGCATGCCACCTGCCACCCGTCGCCCTCCGCT
GCGAGCTCC-CCTTGCGAGAGACGTCACGGGAAGAAGAGGTCCCGCCGCCGCCGGGTCCGCGCGGGCTTTGCCCGACGGA
GCCCCCCAGCAACGGC------------------GAGGGGAGGGGAGCGAGGAGGGGGGGCGGTGG-AGGGGACTGCGCC
GCCGCCCGTGTCGCCCCGGGGATGGAGCGACGTGAGGGCTGGATTCCATTTTTATTGTCGTAATGTTGAACAGCCAGTGT
TGTACTCCCTCCTTTCCGATTTATTGGGCTTATCTTTAGTTTTTCCATTTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ATAAGGCTCAATTTGGTTGTTTTCCATCACATGTTCAGATTTCAAGGTGCATTAAATCATTGC
ATGCAAGTATTAAGAGAAAATTGGCCAATGCATGTAATTTATGCATGCATGCATTGTAATTAATGCATTGGTAAACATAC
TTTTTTGAGGAAAACACGTGCATTAATTGGGTGCTTTTGCAAACTACAAAAAGTATTTCACCACTCACCATCTATCTTGG
TTGGTGAGATTTTTGAATTGAGCCTTATAAACCGGAAAGGAGGGAGTAATAATCATTGTCCTCCAACGTTAGCATACCTC
TTTGACCTTGAATGCCAAGACATATTACACATTTATCCCTTTGATGTGGGGTAGACTTTCCCTAGACTTGTGTAAGAGTC
AATGCTATTCAAGTACCAAAACGATGACCCGCAGTTGTGGGTGCTGCCTTCTCTAGCTACACTATATGCCAACCTACCTA
GCTACCATGCA----TATGCATGACATGCATTGCCAAAGGGATAGCATGGCATCCTAACAATCTGCAGATGCTTTAATCC
--------------------------------------AGTACCACTCTATATATATCATCCCCATCTCCCTCCCCCTAC
CTTCCCATACCCCTCCATGTTCCCTTAGGAAG-GAAGAGAATCTATCTCACCAT-CTAGAAAGAGAGAAACAAAGAGATG
AGGAACCAGAGGCAAGCTCCTATCACTTGCTCCTCTTCAAAGACCAACAACACCAAGCGAGAGGAGCCACACCTCTCAGG
GGCTTACATTAGGAGCCTTGTGAAGCATCTTAGCTCCTCATCCACGGCAAGATCCAAAGACCACCATCACATCACCATGG
GCAGCAAATCACACCAAGAAGAGCAACAAGCCCCACAAACCACACCATCATCTCTA---CAGCAACAGCAGCCACACAAG
AAGCAGGTGAGGAGGAGGCTCCACACGAGCAGGCCATACCAGGAGAGGCTACTCAACATGGCGGAGGCCAGGCGAGAGAT
CGTCAACGCTCTCAAGATCCACAGAGCCTCCATGAGAGAAGCCAAGGAGCAGCAGCAACATCAACAACTTGTGCAACAAT
TGCAGCATCAGCAAGAGGTCCAGGTAGTGCAAGATCATAGGGTAGCTTTTAGTGCACCCAGCATGAGCTCATATGGTTCC
TTCTCAGATTACTTGCACAGCAATACGCCATTTGCACACACCACAGCAACAAGCAACAGTGGTTGCTCATATTATTCATC
TCCTCCACTCCTCCCTTACCACACACCAGTAGTTGCACCCATGGTTCCCATGGTAGATGCTTTAGATCAGTTGCTGCCGC
TGCCTACGCAGCCACTAGGGCTTATCCTGACCTTCGATGGCTTC---GGTGGTGGTGTTGCTGCCGAAGATGCCAAGAAC
TGCACTGCTACTAGCCCCTTTGATCCTCCTTCTTTGGTCCAACAAGCATCACCCGCCTCCTCCTACTCTGTCTACTCCTC
TCCGCCGCCGGCGACGATGGTGAGCCAGGACATGGCGCCCGTTGCTGCCGAGAACACCTCACAGTCGCTGCACCGGGTGC
TGGACGAGGAGGAGATGGCCGCGATCCACTCGGCCGGGGAGCGGCATGACATCGAGTGGAGCGATACCGTGAACCTGGCC
ACGTCGGCGTGGTGGAGCAGGCTACTCGAGAGCGTGGAAGGCGGCGGAGGCGAC------------GACGGGGCCACGGC
GGCGCAGCAGACTAACACGGTGGACGCCATGGGGATGCATCTGAGTGATGAGTACTACGGCCAAGACGCGTCCTTTCCAT
GGTAAGCTAGCTACAGCGAGGCCCCAAACT--------------AAATTAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTATGGACATCGGAGAGATCGAA
GGATGGGACGCCGAGTGGTTCTCATGACATGCCGTCCATCTTATCTTAGGGGAGAATTAACACTTCATCATTTCACTGTA
CCTCAGT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CCTCAAATAATGGAAATTAATG-----------------------------------CTCCTATTCAGATTGCAAATAC
TTTTGCTGCGTGGATGCAAACTGTTTTCTTCTTGCATGTGTTCTTTTCTGGGTAACTTTTGGATGTCTATAATTTATGTT
TTTGCTAGTATGACTTT--ACCATACTTTTGTAGAATCTCGTCACAGAACGACTAGCTATCTACTCTATGTCTGCAGGGA
CCGATGCATGCATCTGTGCTAATGTGTGCATATATTCAGATTGCAAATAATTTTGCTTCGTGGATGCAAAATGTTTTCTT
TTCTGCATGTTCTGGGTTAACTTTTGGATCTCTACGATTTCTGTTTTTGCTATGACTTTACCGTAGTTTGGTAGGATCCT
GTCACCGATCGAACAACTAGCTAGCTAGGTCTGCAGGGACTGATGCATGCATCTGTGTGCTAATGTGTGCATATTATGAT
CAATGCAAGGATTGTCCACTCTAGCAGGCACTCAGCTAGAGATCTACTAGTACTACGATTCATGTAAATTTCTCGACTTT
ACTGCAACGAATCGAAGTTACTACTAGCACTTTGAGCCCAAACATAAGATACTACCTAGTACATGCATAGAGCCTAGAGG
AGCAGACTGGCAGTCACAAATATTGGTCTTAGTCTGACGC-GTATGCATGCTTCAGCGGAGAAGTGTGAGCTG-------
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>chr5D_653
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------------------------------------------------------------------------------TC
TTTGACCTTGAATACCAGTACATTTTAAACATTTATCCCTGAGATGTGGGGGGGACTTTCTCTAGACATGGGTATGAGTC
AATGTTCTTCAAGTACCAAAACGATGACCCACAGTGGT--GTGCTGCTAGTTCTAGCTACACTATCTGCCAACCTACCTA
CTATCTTAAGACCAT-----ATGACATGCATTGCCAAGAGGATAACATGGCATCCTAACAAACTACACATGACTTTTCTT
---------------------------------------GTACCACCCTATATATATCATCCCCATCACCCTCTCCCTAC
CCTCCCATACGCAT-CCTGTTCCCTTAGCAAAAAAAGAGAATCTATCTCACCAAGCTAGAAAGAGAGAAGCAAAGAGATG
AGGAACCAGCGCCTAGCTCCTACCACTTGCTCCTCTTCAAAGACCAACAACAACAAGCAAGAGGAGCCACACCTCTCGGG
GGCTTACATTAGGAGCCTTGTGAAGCACCTCAGCTCGTCATCTACAACGAGATCCAAAGACCACCATCGCATCACCATGG
GCACCAAGCCGCAGCAAGAAGAGCAACAAGCGCCCCAAACCACACCACCATCTCTACAGCAGCAGCAGCAGCCACACAAG
AAGCAAGTGAGGAGGAGGCTGCACACAAGCAGGCCATACCAGGAGAGGCTACTCAACATGGCGGAGGCCAGGCGAGAGAT
CGTCACGGCTCTCAAGATCCACAGAGCCTCCATGAGAGAAGCCAAGGAGCAGCAGCAACATCAACAACTTGTGCAAGAAT
TTCAGCATCAGCAAGAGGTCCAGGTAGTGCAAGATCATAGGCTAGCTTGTAGTGCACCCAGCATGAGCTCATATGGTTCC
TTCTCAGATTAC---------------CCATTTGCACACTCCACAGCAACA---AACAGTAGTTGCTCATATTACTCATC
C---CCACTCCTCTCTTACCACACACCACCAGCTGCACCCATGGTTCCCATGGTTGATGCTCTAGATCACTTGCTGCCGC
TGCCTACGCAGCCACTTGGGCTTAACCTGAGCTTCCAAGGCTTCGGCGG---GGACGTTTCTGGCGAAGATGCCAAGAAC
AACACTGCTTCTAGCTTCTTTGATCCTCCTCCGTTGCTCCAACAACCCTCGCCTGCCTCCTCCTACTCGGTCTACTCCTC
TCCGCCAGCGACGACGATGGCGAGCCAGGACGTGGCATCCGCCACCGTCGAGAACACTTCGCCGTCGCTACACCGGGTGC
TGGATGAGGAGGAGATGGCGGCGATCTACTCGGTTGGGGAGCAACACGACATCGAGTGGAGCGACACGCTGAACCTGGCC
ACGTCGGCGTGGTGGAGCACGCTCCTCGA------------------------C------------GACGGCGCTGCGGC
GGCTCACCAGACAGACTCAGTGGACGTCCCGGGGATGCATCTGGGTGATGTGTACTACGGCGAAGACGTCTCCTTCCCAT
GGTAAGCTAGCTAGACTGATGCAAAGTTGGTTGTTGTACCC---AAATTAAGGTGCAAAAAATTGTTTAATAATCAGGGA
TGTTGATTTTTGGTTTTG--------GTTTTTGC----------------------------------------------
--------------------------------------------------------AGTATGGAGATAGGAGAGATGAGA
GGATGGGACGAGGAGTGGCTCTCATGACATGTCATCCA------------------------------------------
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>chr5B_688
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---------------------------------TATCCCTGAGATGTGGGGGAGACTTTCTCTAGACATGGGTATGAGTC
AATGTTCTTCAAGTACCAAAACGATGACCCACAGTGGT--GTGCTGCTAGTTCTAGCTACACTATCTGCCAACCTACCTA
CTATCTTAAGACCAT-----ATGACATGCATTGCCAAGAGGATAACATGGCATCCTAACAAACTACACATGACTTTTCTT
---------------------------------------GTACCACCCTATATATATCATCCCCATTACCCTCTCCCTAC
CCTCCCATACGCCT-CATGTTCCCTTAGCAAG-AAAGAGAATCTATCTCACCAAGCTAGAAAGAGAGAAGCAAAGAGATG
AGGAACCAGCGGCTAGCTCCTAC---TTGCTCCTCCTCAAAGACCAACAACAGAAAGCAAGAAGAGCCACACCTCTCCGG
GGCTTACATTAGGAGCCTTGTGAAACATCTTAGCTCCTCCTCCACAACGAGACCCAAAG---ACCATCACATCACCATGG
GCACCAAGCCGCAGCAAGAAGAGCAACAAGCGCCCCAAACCACACCACCATCTCTA---CAACAGCAGCAGCCACACAAG
AAGCAGGTGAGGAGGAGGCTGCACACAAGCAGGCCATACCAGGAGAGGCTACTCAACATGGCCGAGGCCAGGCGAGAGAT
CGTCACGGCTCTCAAGATCCACAGAGCCTCCATGAGGGAAGCCAAGGAGCAGCAGCAACATCAACAACTGGTGCAAGAAT
TTCAACATCAGCAGGAGGTCCAGGTAGTGCAAGATCATAGGCTAGCTTGTAGTGCACCCAGCATGAGCTCATATGGTTCC
TTCTCAGATTAC---------------CCATTTGCACACTCCACAGCAAAC---AACAGTAGTTGCTCATTTTATTCATA
C---CCACTCCTGCCTTACCACACACCACCAGCTGCACCCATGGTTCCCATGGTTGATGCTCTAGATCACTTGCTGCCGC
TGCCTACGCAGCCACTTGGGCTTAACCTGAGCTTCCATGGCTTCGTCGG---GGGCGTTGCTGGCGAAGATGCCAAGAAC
AACGCTGATTC------CTTTGATCCTCCTCCGTTGCTCCAACAACCCTCGCCTGCATCCTCCTACTCGGTCTACTCCTC
TCCGCCGGCGACGACGATGGCGAGCCAGGACGTGGCGTCCGCCACCGCCGAGAACACTTCACCGTCGCTACACCGTGTGC
TGGATGAGGAGGAGATGGCGGCGATCTACTCGGTTGGGGAGCGGCATGATATCGAGTGGAGCGACACGCTGAACCTGGCC
ACGTCGGCATGGTGGAGCACGCTCCTCGA------------------------C------------GACGGCGCTGCGGC
GGCGCACCAGACAGACTCAGTGGACGTCCCGGGGATGCATCTGGGTGATGTGTACTACGGCGAAGACGTCTCCTTCCCAT
GGTAAGCTAGCTAGACTGATGCAAAGTTG----TTGTACCC---AAATTAAGGTTCAAAAAATTGTTTAATAATCAGGGA
TGTTGATTTTTGGTTTTG--------GTTTTTGC----------------------------------------------
--------------------------------------------------------AGTATGGAGATAGGAGAGATGGGA
GGATGGGACGAGGGGTGGCTCTCATGACATGTCGTCCA------------------------------------------
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----------------------------------------------------------------
>SNPs
-------------------------------------------------S------------------------------
------------------------------------------------S-----------------------S-------
------S-S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S---------------------S----------
-------S--S----SSSSSSSS---------------------------------------------------------
-----SS--------------------------------------------------S-----------S----S-----
--------------------S---S--------------S----S----------------SS------SSS-SSSSSS-
--------S-SSSS----S----SS-S-S----SSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S-SSS--------S-SS---------S--
---S--------S-------------------S--S--------------------------------------------
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----------------------------------------------------------------------SS--------
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--------------------------------------------------------------S-----------------
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-------------------------------------------S---------S--------------------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S--------------------
--------------------S---------------------S-------------------------------------
-----------------------------------------------------S--------------------------
-------------------------------------S-----------------------------------S------
--------------------------------------------------------------------------------
-------------------------------------S------------------------------S-----------
---S-----------------------S----------------------------------------------------
-------------------------------------------S------------------------------S----S
----------------------------------------------------------------S---------------
---------S--------------------------------------------------S-----------S-------
----------------------------S--------------S------------------------------------
------------S-------------------------------------------------------------------
------------S------------------------------------------------------S------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
---------SS---------------------------------------------------------------------
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-----------------S--------------------------------------------------------------
--------------------------------------------------------------------------------
------------S-------S--------------------------------------------S-S------------
-SS-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S----S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------
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-------------------------------------------------------------------------S------
-S---------------------------------------------------------S--------------------
--------------------S----------S---------------S-S------S-----------------------
---------S----S-----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S----S------------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_3381
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CTTCCCATACCCCTCCATGTC-----------------------------------------------------------
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>reverse_5530
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---------AATTGACCACTCTAGCCGGC---------------------------------------------------
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----------------------------------------------------------------
