>input_sequence_55758
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--------------------------------------------ATGATAAACAAAGTCAGATCCACCACCAGCCTACCC
ACCGCAGCCCACAAGTTTGCTCCACCAACAACCTTCCAAGAAAAGTCGGGATTCTCCGAGGAATCGGCCATGACCGACGC
CGGAGCAGGCCGGCGCATCACCGTCAGGTCCGTCTCCTGCCGCGGGGTCAAGTCCTTTGTCCCCTTCCAGAAGCCGCCGC
TCTACGCGGCCGTGTCCCTCGGCGGCCGCCGGGAGAAGACGCCCGCCGACCCGGACGGCGGCGAGAACCCGGACTGGGAC
GACGCCGTCTTCGCGTTCGACGTCGACGGCGCGGGCGCGGGAGAGGCCGGCGACGGCGGGCTCCTGCAGTTCGAGGTCAA
GGCGCAGGTGCCGCTCCTCGGCACCAAGCTCGTCGGCACGACCTGCGTGCCGCTGTGCCATCTCGGTGGCGATGGCGGGG
CGCCGCGGCGCGCGAGCTACCAGGTGCTCGCCCCCGACGGTAAGCCCAACGGCAGCCTCAGCTTCGTCTACGCCTTCACC
GTGGGCGGCGCGTATCAGCAGCCGCAGATCTACGGCGCGCCGGAGCAAGACCTCGGCTCTTGCTGCGCGCCTCCGCCTCC
GCCCCCGTCGAGCTCGGCTTATCCAGCTCCGGCGGCAACAAGCTTTGCTCCACACGGCAGCAGCTACCCTCCGCCGCCGT
CGAGTTCGGCTTATCCAGCTCCGGCGACAACAAGCTTTGCGCCGCACGGCAGCAGCTACCCGCCACCACAATCTCCATTA
CCGCCAGTGTCCTCACTGTATCCGTCGCTACACGACGTTCTGCCGCCAAGCAGCTACCCTCCGCCG--------------
-------------TCCAATTTCGGACCAAACAGTAGCTACCCGCCGCCGTCGGCACCGCCGGCCACTGCATATCCGCCAC
CGCCGCCGTCGTGCACAGCCTGCCCGGCTCCTCCGGCACAATACATCAGCAGCTATCCGCCTCCACCGCCGAGCTATTAT
CCTCCTCCACCACCGAGCGGCTACCCACCTCCAGCGCGGATGAACCCGGAGTTCCCGGCTTCCAGCTTCCCCCCTCCAGC
CAGCAGCTATCCGCCGCCGCCGGAGTCCGGCTCAGAGTTCCCTGTACTTTCAAGATCAGTTGATCGTGCATCGCCATACG
TGGCGCCGATGTTTCAGGACTCCGCCATCACTTACCCGCCGGTGCCTACCGCCGGCTCTTACTACCCTCCGCCGGGGACA
CGGCACCGCGAGGAAGGGGCGAGTTCGCCGTACTACTACCCTCAGCCTGGGACTCGCTACTCGTAG--------------
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>chr2A_1_TraesCS2A01G457700
GGTGGGACTTTGTATCATTGATGACATTTCGTGTTCCCCATGCCTCTCCAATGGAGACTCGTTTCCCTCCAAAGAAGTTA
ATTTGGGACTAACCTTGGTCTCGGTGCCTTGTGGTTATTGCTATCCTTGCTCTTATTTGTGCTTAGTTATCTAGTATGGT
GTTTCCGTATATTTTG----------------------------------------------------------------
----CTAGTTGCTTTG--------TGGTGTCTCATCCAATTATACATTTTGTGAAATGTTTACCAGTGATCTTGAATTTG
CTAAGAAAATATTAAAAATTTACCGCAAAAAAAGAGAAAGCATTAAAATTATGCTAGCATATTCACCCTCCCTGTGGTCA
ACTCTTTGATCCTAGAGATACCCCTCATCTCTTGTTGCTTCCAAGACAACAACACATACTTTATGCATATCTCACAAAAA
AAAGAGCATACTTTATGCATAAAAAGGACAGAATCTTCCAAGTTTTTACTCCTCGTTGATAACGATGTTCCACACCCCAT
GGGTACAAGACATCAAAGCGTGAACGAAAAGAACAAGTATAGAGTGGGAGGAGAAAACGAGGAAGGAGACAGGTGTGTGT
AGTCATGGCACATTGACAAAAAAGAACAAAATTGAGAGAGGAATGGCAGCTAGCACAACAAGGCTCGAAGGCTCGAAGCT
TCCTTGGGTAGATATAGTCAGGCCATAGAATAAATTTGCCTATA-CAATACTAGCTGCACTAAGTTTTGCAAGACTTTCT
CCCCGTGATGGTTAAAGGAGTAGCTTTTATTTCTATGGATTCTAAATTAATTACACTGTCCACCAAAATTTAATCAGAAA
GATTTTGCAAGATTTTTTTGCTTTGCTATGCATCAATTTTGCTCATTATCAGTA-TACCAATAATCAAGCGTCAAAATAA
TT---GCACTATAATAAAAG---GTCAAAAATTGCAAGATTGCCACCTGTATTCCAATGATCCAATCTGAGTATAAATAA
ACCAGACAAACACTGACGTCACAGCACCTGCCATTGATTCCTGCATGATAAACAAAGTCAGATCCACCACCAGCCTACCC
ACCGCAGCCCACAAGTTTGCTCCACCAACAACCTTCCAAGAAAAGTCGGGATTCTCCGAGGAATCGGCCATGACCGACGC
CGGAGCAGGCCGGCGCATCACCGTCAGGTCCGTCTCCTGCCGCGGGGTCAAGTCCTTTGTCCCCTTCCAGAAGCCGCCGC
TCTACGCGGCCGTGTCCCTCGGCGGCCGCCGGGAGAAGACGCCCGCCGACCCGGACGGCGGCGAGAACCCGGACTGGGAC
GACGCCGTCTTCGCGTTCGACGTCGACGGCGCGGGCGCGGGAGAGGCCGGCGACGGCGGGCTCCTGCAGTTCGAGGTCAA
GGCGCAGGTGCCGCTCCTCGGCACCAAGCTCGTCGGCACGACCTGCGTGCCGCTGTGCCATCTCGGTGGCGATGGCGGGG
CGCCGCGGCGCGCGAGCTACCAGGTGCTCGCCCCCGACGGTAAGCCCAACGGCAGCCTCAGCTTCGTCTACGCCTTCACC
GTGGGCGGCGCGTATCAGCAGCCGCAGATCTACGGCGCGCCGGAGCAAGACCTCGGCTCTTGCTGCGCGCCTCCGCCTCC
GCCCCCGTCGAGCTCGGCTTATCCAGCTCCGGCGGCAACAAGCTTTGCTCCACACGGCAGCAGCTACCCTCCGCCGCCGT
CGAGTTCGGCTTATCCAGCTCCGGCGACAACAAGCTTTGCGCCGCACGGCAGCAGCTACCCGCCACCACAATCTCCATTA
CCGCCAGTGTCCTCACTGTATCCGTCGCTACACGACGTTCTGCCGCCAAGCAGCTACCCTCCGCCG--------------
-------------TCCAATTTCGGACCAAACAGTAGCTACCCGCCGCCGTCGGCACCGCCGGCCACTGCATATCCGCCAC
CGCCGCCGTCGTGCACAGCCTGCCCGGCTCCTCCGGCACAATACATCAGCAGCTATCCGCCTCCACCGCCGAGCTATTAT
CCTCCTCCACCACCGAGCGGCTACCCACCTCCAGCGCGGATGAACCCGGAGTTCCCGGCTTCCAGCTTCCCCCCTCCAGC
CAGCAGCTATCCGCCGCCGCCGGAGTCCGGCTCAGAGTTCCCTGTACTTTCAAGATCAGTTGATCGTGCATCGCCATACG
TGGCGCCGATGTTTCAGGACTCCGCCATCACTTACCCGCCGGTGCCTACCGCCGGCTCTTACTACCCTCCGCCGGGGACA
CGGCACCGCGAGGAAGGGGCGAGTTCGCCGTACTACTACCCTCAGCCTGGGACTCGCTACTCGTAGGAGGAATCTTGCAG
ATTACT------TGGTACTTGGACTTTGGGATGCATAGCAAATCACAAAGCA----ATGACCTTTTGTTTA---------
--------------TAGCACAAAGCAATGACTTTGTAATCGCAGTGATTTCCAGCAAAGAGTGTGGATTTGTTGTACTCC
CTCCATTTTTATTTATTCTGCATATTAGATTTGAGAAGTAAAGTTTGACCAAATTTATAAAAAATAATATGAACATTTAT
TGTAACAAATCTATAGGTTGTAAAAGCGATTTCAATAATGAATCTAATGGTATTGATTTGTTATTGTATATATTAATATT
TGACTTTGATCAAATCTAATACGTGGACTCAATAAAAACAGAGGGAGTACTACAATACAAACTTGCCCTCTGTCTAGACC
ATTTTGTTTGTGTCAAGAATCATGTTATTTTTATATAGAAATTTCTATCTTTTGTTTCTTTCAAACAAGAGAACTTTTGA
CCTTCAACTTTGCACGTCAACTATACAAGAGTGCCACTAACTGCATAAAATGTTTCCGATTTTTCTGCTGAAATATAAGT
TTGTCAAATTTTAAATTTCAAATGAATTGTATTATTTAAAAAAATATGTTGCGCCAAAAAACATCCGAAAACTTTTCTGC
ATATTGTAGTACTTATGTGATGTTGATCTACAAAGTTTCGAGTTCAAATGGTCTTTATTTGGTAGGAAAAAAAAGAAGTT
TGGTTGCATGAACTTTGATGCAAAAATGTACGACGAGGACCGAGGATAGTGGGTACATTGGTATGGAGGTAGCACAATCA
GAACTTTCCATTTTCAACAATTCTATTTGCTCACAATCACAAGAAATTTGTCCCAAGATATAACACTTAATTTGGTTTTA
TTTGATTCATTTGTTCTTTATTGCCACGTGCTCGCAAGCACTCATGTTTTGCTCTTAAAATTTTGCAGGAGACGTTTGGT
AGCCTGCATTCCCTAGCTAGGTTTGCTGGAAGCAAATTCGACTCGTTCGGTAACTTGTC
>chr2B_1
GGTGGGACTTTTTATCGTTGGTGATATTTTGTGTT-CCCATGCCTCTTCAATGGAGACTCGTC-CCCTTCAAAGAAGTAA
ATTTAGGACATACCTTGGTCTCGGTGCCTTGTGGTTATTGCTATCCTCGCTCTTATTTGTGCTTAATTATT---TATGGT
GTTTGCCATATATCTTGCTATCCACTCCCTTCGTCCCATAATGTAAGACTTTTTTTAACACTGCATTATGAGGCGGAGGG
AGTACTAGTTGCTTTGCTCAACTATGGTGTCTCCTCTGTTTGTATATTTTGAGCAATATTTATCCATAACCTTGGATTTG
CTAAAAAGATATTAAAATTACAGTAACATATTATCATCTCTGCAGCCAACGTCTTTGATCGTGC----------------
---------------AGATACCCCCGATCTCTTGTTGCTTCCACGACAACACGTACT-----------------------
-----------TTTATGCATAAAAA----AGCATCTTTTAAGTTTTTACTCCTCGTTGACAACGATGTTTCACACCCCAT
GGACACATGACATCAAAGGGTGAACGGAAAGAACAAGTATAGAATGGGAGGAGAAAACGAGGAAGGAAACAG----GTGT
AGTCATGGCACATTGCCAAGAAAGAACAAAATTGGGAGAGGAATGGCAGCTATCACAACAAGGCACGAAGGCTCGAAGCT
TCCTTGGGTAGATAG----------TACAATAAATTTGCCCTCTACAAGCTAGTACTAAG-----TTTGCAAGACTTTCT
TCCCGTGATGGTTAAAGGAGTAACTTTTATTTTTATGGATCCTAAATTAATCACACTATCCACCGAAATTTAATCACAAA
GATTTTGCAAGATTTTTTTGCGT-----TGCATCAATTTTGCTCATTATCAGTAGTAGCAATAATTAGGCTTCGAAATAA
TTTTTGCATTATAATAAAGG---GTC-AAAATTGCAAGATAGCCACCTGTATTCCAATCTGAG------------AATAA
ACCAGACAAACAATGATGTCACGGCACCTGCAATTGATGGCTGCATGATAAACAAAGTCAGATCCACCAGCCTCCCCACG
---GCAGCCCACAAGTTTGCTCCACCAACAACCTTCCAAGAAAAGTCGGGATTCTTCAAGGAATCGGCCATGGCCGACGC
CGGAGCAGGCCGGCGCATCACCGTGAGGTCCGTCTCTTGCCGCGGGGTCAAGTCCTTTGTCCCCTTCCAGAAGCCGCCGC
TCTACGCGGCCGTGTCCCTCGGCGGCCGCCGGGAGAAGACGCCCGCCGACCCGGACGGCGGCGAGAACCCGGACTGGGAC
GACGCCGTCTTCGCGTTCGACGTCGACGGCGCGGGCGCGGGAGTGGCCGGCGACGGCGGGCTCCTGCAGTTCGAGGTCAA
GGCGCAGGTGCCGCTCCTCGGCACCAAGCTCGTCGGCACGACCTGCGTGCCGCTGTCCCATCTCGGCGGCGACGGCGGGG
CGCCGCGGCGCGCGAGCTACCAGGTGCTCGCCCCCGACGGTAAGCCCAACGGCAGCCTCAGCTTCGTCTACGCCTTCACC
GGCGGCGGCGCGTATCAGCAGCCGCAGATCTACGGCGCGCCGGAGCAAGACCTCGGCTCTTGCTGCGCGCCTCCGCC---
GCCCCCGTCGAGCTCGGCTTATCCAGCTCCGGCGATGACAAACTTTACTCCACACGGCAGCAGCTACCCTCCGCCGCCGT
CGAGTTCGTCTTATCCAGCTCCGGCGACAACAAGCTTTGCGCCACACGGCAGCAGCTACCCACAACCACCATCTCCATTA
CCGCCAGGGTCTTCATTGTATCCGTCGCTACACGACGTTCTGCCGCCAAGCAGCTACCCTCCGCCGGGAACGACGGGCTC
ACTGTTTCCGTCGTCAAATTTCGGACCAAACAGTAGCTACCCGCCGCCGTCGGCAC---CGGCCACTGCATATCCGCCAC
CGCCGCCGTCGTGCACAGCCTGCCCGGCTCCTCCGGCACAATACATCAGCAGCTATCCACCTCCACTGCCGAGCTATTAT
CCTCCTCCACCACCGAGCGGCTACCCACCTCCAGCACGGATGAACCCGGAGTTCCCGGCTTCCAGCTTCCCTCCTCCAGC
CAGCAGCTATCCGCCGCCGCCAGAGTCCGGCTCAGAGTTTCCTGTCTTGTCAAGGTCAGTTGATCGTGCACTGCCATACA
TGGCGCCCATGTTTCATGACCCCGGCAGCACTTACCCGCCGGTGCCTTCCGCCGGCTCTTACTACCCTCCGCCGGGGACA
CGGCACCGCGAGGAAGGGGCGAGTTCGCCGTACTACTACCCTCAGCCTGGGACCCGCTACTCGTAGGAGGAATCTTGCAG
ATTACTAGTACTTGGTA----GGCTTTGGAATGCATAGCAAATCACAAAGCT----ATTCCAAAGACTTTGTACTTAATT
TATAAGTATATACC---------GCAATGACTTTGTAATCGCAGTGATTTCCA---------------------------
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>chr2D_411
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------CATACTTTGTGCATAAAAA----AGAATCTTCCAAGTTTTTACTCCTCGTTGACAACGATGTTCCACACCCCAT
GGGTACAGGACATCAAAGCGTGAACA-AAAAAACAAGTATATAATGGGAGGAGAAAACGAGGAAGGAGACAG----GTGT
AGTCATGGCACATTGCTAAAAA--AACAAAATTGGGAGAGGAATGGCAGCTGTCACAACAAGGCTAGAAGGCTCGAGGCT
TCCTTGGGTAGATAGC--CAGGCCATAGAATAAATTTGCCCTCTGCAATACTAGCTGCACTAAGTTTTGCAAGACTTTCT
TCCCGTGATGGTTAAAGGAGTAACCTTTATTTGTACGGATTCTAAATTAATTACACTATCCACCAAAATTTAATCAGAAA
GATTTTGCAAGATTTTTTTGCCT-----TGCAACAGTTTTGCTAATTATCAGTACC----ATAATTAAGCTTCAAAATAA
TT---GCATTATAATAACAAAATGTC-AAAATTGCAAGATAGCCACCTGTATTCCAATGATCCAATCTGAGTATAAATAA
ACCAGACAAACACTGACGTCACAGCACCTGCCATTGATTCCTGCATGATAAACAAAGTCAGATCCACCAGCAGCCTACCC
ACCGCAGCCCACAAGTTTGCTCCACCAACAACCTTCCAAGAAAACTCGGGATTCTCCAAGGAATCGGCCATGGCCGACGC
CGGAGCAGGGCGGCGCATCACCGTGAGGTCCGTCTCCTGCCGCGGGGTCAAGTCCTTTGTCCCCTTCCAGAAGCCGCCGC
TCTACGCGGCCGTGTCCCTCGGCGGCCGCCGGGAGAAGACGCCCGCCGACCCGGACGGCGGCGAGAACCCGGACTGGGAC
GACGCCGTCTTCGCGTTCGACGTCGACGGCGCGGGCGCGGGAGAGGGCGGCGACGGCGGGCTCCTGCAGTTCGAGGTCAA
GGCGCAGGTGCCGCTCCTCGGCACCAAGCTCGTCGGCACGACCTGTGTGCCGCTGTCCCATCTCGGCGGCGACGGCGGGG
CGCCAAGGCGCGCGAGCTACCAGGTGCTCGCCCCGGACGGTAAGCCCAACGGCAGCCTCAGCTTCGTCTACGCCCTCACC
GGCGGCGGCGCGTATCAGCAGCCGCAGATCTACGGCGCGCCGGAGCAAGACCTCGGCTCTTGCTGCGCGCCTCCGCCTCC
GCCGCCGTCGAGTTCGGCTTATCCAGCTCCGGCGATGACAAACTTTGCTCCACACGGCAGCAGCTACCCTCCGCCGCCGT
CGAGCTCGGCTTATCCAGCTCCGGCGACAACAAACTTTGGGCCACACGGCAGCAGCTACCCGCCACCACCATCTCCATTA
CCGCCAGCGTCTTCACTGTATCCGTCGATACACGACGTTCTGCCGCCAAGCAGCTACCCTCCGCCGGGAACGTCGGGCTC
ACTGTTTCCATCGTCCAATTTCGGACCAAACAGTAGCTACCCGCCGCCGTCGGCACCGCCGGCGACTGCATATCCGCCAC
CGCCGCCGTCGTGTACAGCCTACCCGGCTCCTCCGCAACAACACATCAGCAGCTACCCACCTCCACCGCCGAGCTATTAT
CCTCCTCCGCCACCGAGCGGCTACCCACCTCCAGCGCGGATGAACCCGGAGTTCCCGGCTTCCAGCTTCCCCCCTCCAGC
CAGCAGCTATCCGCCGCCGCCGGAGTCCGGCTCAGAGTTTCCTGTATTGTCAAGATCAGTTGATCGTGCACTGCCATACA
TGGCGCCGATGTTTCAGGACTCCACCATCGCTTACCCGCCGGTGCCTACCGCCGGCTCTTACTACCCTCCGCCGGGGACA
CGGCACCGCGAGGAAGGGCCGAGTTCGCCGTACTACTACCCTCAGCCTGGGGCCCGCTACTCGTAGGAGGACTCTTGCAG
ATTACT-GTACTTGGTATTTGGGCTTTTGAATGCATAGCAAATCACAAAGCTGCTCATTCCAAAGACTTTGTACTTAATT
TATATTGTATATACTAGCACAAAGCAATGACTTTGTAATCGCAGTGATTTCCA---------------------------
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>SNPs
-----------S----S---S---S----S-----S-----------S--------------SS----S---------S-
----S----SS------------------------------------S-----------------S----SSSS------
----S-SSSSSS-S-S----------------------------------------------------------------
---------------------------------S--SSS--S--S------S-S---S----S-SS-S-S----S-----
----S--S---------S-SS-SSSSS-S-SS-SSSSSSSSSSSSSS-SSS-SS-S-SSSS-S-SSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS---------SS-----------------S-------SSSSS-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSS-------------------SSSS------------------------------S--------------------
-------S------------------S----------------S----------------------------SSSS----
---------------S------------------S-----------------S---------------------------
--------------SSSS----------------------SSSS------------------------------------
S---------------------S---------S------------------------S----------------------
---------------------S-SSSSS-----------------------------S-------S----S---------
--------S-----------------S-------------S---------------------------------------
---------------------------------------------------------------------S----------
---------------------------------------------------------S--------------S-------
------------------------S-------------------------------------------------------
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--------------------------------------------------------S---------S-----S-------
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-SS-----------------------------------------------------------------------------
----------------------------------SSS----S--------------------------------------
-------------------------------------------S-------------------------S----------
-------S---S--------------------------------------------------------------------
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----------------------------------------------------------S---------------------
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---------------------------------------S------S-S---------------------SS-------S
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-----------------------------------------------------S--------------------------
-----------------S----S------S---------------------S------SS-SSSSSS---S---------
-----------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_636
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--------------------------------------------------------ACGAGGAAGGAGACAGGTGT----
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>reverse_1717
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------------------------------------AACAAGCTTTGCTCCACACG------------------------
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>forward_1602
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--------------------------------------------------------------TTCGTCTACGCCTTCACC
GT------------------------------------------------------------------------------
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>reverse_3362
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-GCCTGCATTCCCTAGCTAGG--------------------------------------
