>input_sequence_55743
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-----------------------------------------------ATGGCGAACAGTTTGCAGCATATACTAAGTGCA
GTGCCAAAGGCCATACCTTATGCGTTGTTAGAAGAAATTACAGACAACTTTTCAGATGAGCGAATGCTTGGTCAAGGTGG
CTTTGGAAAAGTTTACTGGGTATGATTAATAGTTTGA-----TTTTCTATTTTTCATTCTTCTCTGGTGCAATACTATCT
GCTATTGAA--CCCTGACCTGCCTATTGCCTGTTCGACGCACTGCTACTCTGTGTACCCTGATATGCTTTATTTTTTTAA
TAAAAATCCCCACCATTGGCGTTTCAACAGATTTCATGTTTCTGAAATGATAACAGTACAAGAAACCCATGAATACAATC
TGTTTTTTTTTTGTTTTGACAGGGAATGTATAATGGAGAAGAAATTGCTGTGAAAAAGCTTAGAATGATACAGCACCTTG
CTGATGAGCCACAATTTAACAATGAACTTCTTAGTCTTGTGCATGTCCAACATCAAAATATTGTCAAGTTAGTTGGCTAC
TGCTATCAAACAAAACATGAAGTTAATGTATACAATGGAAGACTTGTCGTGGCTGACGTGATAGAAAGAGTTCTCTGCTT
TGAGTACCTTTCCCGTGGAAGCCTCGACGAATATCTTTCTGGTATGATCGTGCTTTACATAGAGTTAATACTTCTAAAGT
ATAAATATACATCTTGGTAATACAACTTTATGTTAA-CTCTACAGACGAATCCTGCGGACTTGATTGGTACGAACGTTAC
AAAATAATTGTCGGGATTTGTGAGGGTCTAAATTTCCTTCACAATGGAACCAAAAGAGCAGTTTACCATCTTGATTTAAA
ACCTGCAAACATATTGTTGGATGAGAACTGGATGCCAAAAATTTGTGACTTCGGTCTGTCAAGACTCATTAGTAACTCAG
CAAAAAGCCATAACGCGGAACACTGTATCGGAACACCGTATGTTCATACCTCATGA-TCATGTGATCAACTTCTTTTCAT
CAATATTGTTACAGAAAAAACATGTAACTTTTTTGTATCCTGCAGTCCCTTCATGCCACCAGAATACATAGAGAAGGGCA
GAATCTCTGACAAGTATGATGTTTTCAGCTTAGGCGTCACAATCATACAAATAATTGCAGGCCGTGATGGCCATAGCAAA
TATGAAGACATGCCTTGCCAAAAATTTGCTGAACTTATACGGGCATAATTATGTGATCAATAATAATGGAGTTGCTTAAA
TTAGTACTAACATCATCAGTTGTGTCATGTTTAAATACCATTTTGTAGGTAA----------------------------
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>chr2B_1_TraesCS2B01G618000
TGGATGGAAGGGAAAACAGCAGCGTGTGCGGTCACCTGTCATAGTTGGAGTGGTCTCTCGTTTGCGGTGTGGTATAATAA
GTACGCGGGACCGCGGGGACAGACCTGATTAGCGCTCGCCCATCAATGCGGACAGTGACAGTAAGACTTGGGGAATACCA
GACTTGGTCTTTTAAAATCGGGTTTTGATCTTGCTGACTCTTCTCCCTTTCCGGCCGGACGATGTTTTGCGGAAACAACA
GTACCGAGAAACGTCCACAGAAATTGGGTTCTATCTCCGGCTGCTCATATATATATATATAGTAGAGCTTTGAGCTTGGT
GAGCTCACAGGTCCTCCCCATTTCTCCAACACCAAGCCTCCGACACTTGTGCTTTGTGTGCTCCGGCTCCCGGCGGGCTC
AACAGTCGGGCGCCCTTTGTGTGCTCCAGCTCCACTGTTCCAACAACATCTTCTTTCCCGACGCAGCGATCGTCCATCCC
TACTACGGCTAAAGTAAAACTTCTCAGCTATCTTTTCCAACAACTTCCATCCTCTACTCTTTTAAAGATCTCCATTGCAA
ATAGTAATAATAAATCGTACTTTTTGGTGCCCTTATGTGAGTTACCCTCATGTTTTTAAAGTACAACAAATGTTTCCTAC
CCCTCATGTGAGTTTTGTATATTGTATATAGTATCTATCAAAATCAAGAGTATTTACGTGTAGTATGTAGTATATACAAA
TGTTTGGGTGGTATATATATCATACTTTTTGGTCGGCCAAGCGTTCTATATATATATGTGTTACGGATGGTCTTAAACCA
TTAATGATCTCTCCTTGTATATAGGTAAGGTTCGAAAATATTCGCAAAAAAAAAGGTAAGGTGCGAAAATGGTTCGTTGG
TGAGAAGCTGCTCGCT-----TTTTTTTGCATTAATCTCCCTAGGTTCTTGTTG-TTTTCTGATATTGAAATATTTCTGA
AATTCT-AGAGAGGTACAAGGGCAAAGTTCTTCGGAGATAAATTACCATGGCGAACAGTTTGCAGCATATACTAAGTGCA
GTGCCAAAGGCCATACCTTATGCGTTGTTAGAAGAAATTACAGACAACTTTTCAGATGAGCGAATGCTTGGTCAAGGTGG
CTTTGGAAAAGTTTACTGGGTATGATTAATAGTTTGA-----TTTTCTATTTTTCATTCTTCTCTGGTGCAATACTATCT
GCTATTGAA--CCCTGACCTGCCTATTGCCTGTTCGACGCACTGCTACTCTGTGTACCCTGATATGCTTTATTTTTTTAA
TAAAAATCCCCACCATTGGCGTTTCAACAGATTTCATGTTTCTGAAATGATAACAGTACAAGAAACCCATGAATACAATC
TGTTTTTTTTTTGTTTTGACAGGGAATGTATAATGGAGAAGAAATTGCTGTGAAAAAGCTTAGAATGATACAGCACCTTG
CTGATGAGCCACAATTTAACAATGAACTTCTTAGTCTTGTGCATGTCCAACATCAAAATATTGTCAAGTTAGTTGGCTAC
TGCTATCAAACAAAACATGAAGTTAATGTATACAATGGAAGACTTGTCGTGGCTGACGTGATAGAAAGAGTTCTCTGCTT
TGAGTACCTTTCCCGTGGAAGCCTCGACGAATATCTTTCTGGTATGATCGTGCTTTACATAGAGTTAATACTTCTAAAGT
ATAAATATACATCTTGGTAATACAACTTTATGTTAA-CTCTACAGACGAATCCTGCGGACTTGATTGGTACGAACGTTAC
AAAATAATTGTCGGGATTTGTGAGGGTCTAAATTTCCTTCACAATGGAACCAAAAGAGCAGTTTACCATCTTGATTTAAA
ACCTGCAAACATATTGTTGGATGAGAACTGGATGCCAAAAATTTGTGACTTCGGTCTGTCAAGACTCATTAGTAACTCAG
CAAAAAGCCATAACGCGGAACACTGTATCGGAACACCGTATGTTCATACCTCATGA-TCATGTGATCAACTTCTTTTCAT
CAATATTGTTACAGAAAAAACATGTAACTTTTTTGTATCCTGCAGTCCCTTCATGCCACCAGAATACATAGAGAAGGGCA
GAATCTCTGACAAGTATGATGTTTTCAGCTTAGGCGTCACAATCATACAAATAATTGCAGGCCGTGATGGCCATAGCAAA
TATGAAGACATGCCTTGCCAAAAATTTGCTGAACTTATACGGGCATAATTATGTGATCAATAATAATGGAGTTGCTTAAA
TTAGTACTAACATCATCAGTTGTGTCATGTTTAAATACCATTTTGTAGGTAAACTTGAATTGGAGGATAAGGATAGAGGG
AACATCAAAGCATGTGGAAGAATACTGCCAGCAAGTCAAGAAATGTATCACAATTGCATTAGATTGCCTGGAGCATGACA
GAGACAAAAGGCCCACTATAGGGTCTATTATCGATACGTTGAAACAGCTAGAAACCATGACTCACAGAACAGTAGAAGAA
GAAAAAGAAGGAGAACCTGAGCAGTTGGAACAGATAGAAACCATGATTCATAACACAGCAGAAGAAGAGAAAGAAGAAGA
CCAGGAGCAGTTGGAACAGATAGAAACCACGATTAACAGCACTGTAGAAGGAGAAGGGC---------AACAGGAGCAGG
AGAACGTAGTTACAATTCTTACTCTCTTATAATTATATATTCGTCATTCTTTTTATATTCCGATATATTTCTTGATTGGT
TTACAGTCTCAAGTTCTTACATACGGGCCTTGGGGTGGAAATGGCGGGACTCCTCATGACATCGGGGCAGCATCTTCCTA
TCGTCTTAAAAGTGTGACAATTCGTTATGGCGATATCATTGATTCACTTACATTTTCATATAGCGATCACAGTGAGCACG
TACGCAGTGTTGGTCCATGGGGTGGTACTGGTGGTGCGAACAAATATACGGTGAGTCAACAAAATCTTAGAATAATAATT
TTCACTCTTTGTTT-TAAATATAGTATCCACTCAAACTAATATCGAAAATTGA-TGCGCATGATTTATTTTTCTTAGTTT
TGTAACCTATGACACTCTTTTAAGTTATACATA-------------AAA---AAAGTAGCTGACTTGCTACTGTTCTCTA
TTCTCTTATAGATCAAATTTGAACCATCAGAGTTTCTCACAGAAATTTCTGGACAATTTGGTCCATATGCGTTATCAACT
TCCAATGTCATAACATCGCTCATGCTGGTAACCAATGAGGATAGATATGGACCTTTTGTATTTGTACAAGGAACTCCTTT
CTGCAGCAACTTGGAAAACGATTGGGCTATAGTTGGTTT
>chr4A_854
AGGCACGGTGA---------------------------------------------------------------------
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-----------------------------------------------------------------AAAAATGGTCGCTGG
TGAGAAGCTGCCTGCTTCTAATTTTATTTCAATAATCTCCCTCAGTTCTTGTTGTTTTTCTGATATGAAAATATTTCTGA
AGTCTTAAGAGAGGTACAAAGTCGACGTTCTTCAGAGACAAATTGACATGGCGAACAATTTACATCATGTTGTAAGTGCA
ATGCCAGAGGCCATTTCGTATACATTGTTAAAAGAAATTACAAAGAACTTTTCAGATGAGCTAAAAATTGGTGAAGGTGG
CTTTGGAAAAGTCTACAAGGTATGCGCAATAATTAGATTTTCTTTTCTATTTTTCCTTCTTCTCTGGTGCAACACTATCT
GCTGATGGTTGCGCTGCCCTTCCCTTTGCCTCTTTGACATACAGCTACTCTATGTACCCTGATATGCTTTATTAACAAAA
CTC----CCCCACCGTTGTTGTTTGAAAAGATTTTCTGTTTTTCAGATGATAACACTACAAGAAACACAATTAATAGAA-
-------TTTTTGTTTTGACAGGCAATATATAATGAAGAAGAAATTGCTGTGAAAAGGCTTTTTCTGATATCGGGCCTTG
TTGATGAGACAAAATTTAACAATGAACTTCTTAATCTTGTGTGTGTCCAACATCAAAATATTGTCAAGTTAGTTGGCTAC
TGTTATGCAATACAACGTCAAGTTACTGAATACAATGGAAAACAAACTTTTGCTGATGTGGATGAGAGAGTTCTTTGCTT
TGAGTAATTTCCCAGTGGGAGCCTCAAGAAGCATCTCTCTGGTATGATCGTGCTTTACACAGAGTAAATATTTCCAAAGT
CTAAATACACATCTTGGTAATACAGCTTTATGTTAACCTCTTCAGATGAATCACGTGAACTTAATTGGTACAGACGTTAC
AAAATAATTGTCGGGATTTGTGAGGGTCTAAATTTCCTTCACAATGGATCTGAAAGAGAAATTTACCATCTTGATTTAAA
GCCTGCAAACATATTGTTGGATGAGAACTGGATGCCGAAAATTTGTGACTTTGGTCTGTCAAGACTCATTAATGATTCAA
TAAGAAGCTTTAACACAGAACATCTTTGTGGATCACAGTAAGTTCATACCTCATGACTCATGTGATCAGCTTCTTT-CAT
CAATACTGTTAAGAAAATATA---TAACATTTTTGTACCTTGCAGTCCCTTCATGCCACCAGAATACATAGAGACTGGCG
GAATCTCTAAGAAGCATGATGTATTCAGCTTAGGCGTCACAATCATACAAATAATTGCAGGACCTAACGGCTATGGCGAA
TATGTAGACATGCCTTTCAATAGATTTGCAGAACTTGTACGGACATAATCATCTTATCAAGAATAATGTAGTTGCTTCAA
TTAGTAATAACATCCTCAGTTGTGTCGTGTTTAAATCCAATTTTGTAGGCACTCTTGAACTGGAGGGGAAGGATAGAGGG
AACATCAAAGCACGTGGAAGAATACTGCCAGCAAGTCAAGAAATGTATCACAATTGCATCAGCTTGCGTGGGACATGACA
AAGACAAAAGGCCAACTATAGGGTCTA---------CGTTGGAACAACTACAAGCCATAACTCATAGAACAGT-------
--------------------------------------------------------AGAAGAAGAAGAAAGAGAAGGAGA
ACAGGAGCAGTTGGAACAGATAGAAACCACGATTGACAGAACAATAGAAGAAGAAGAAAGAGAAGGAGAACAGGAGCAAA
AGAATGTAATTACTATTCTTAGTCTCTT--AATTATTTATTCTTCATTCTTTTCACCTTCCAATTTATTTCTTGATTGGT
TTACAGTTTCAAGTTGTTAAGTATGGGCCTTGGGGTGGAAATGGCGGAACTGCCCATGACATCGGGGCAGCATCTTCCCT
CCGTCTCAAAAGTGTGACAATTCGTTATGGCGATATCATTGATTCACTTACGTTTTCATATAGCGATCACAGTGGGTATG
TGCACACCGTTGGCCCATGGGGTGGTACTGGTGGTGCGAACAAATATACGGTGAGTGAGCAAAACTTTTGT---------
-----------TTT-AAAAAATTGTATGCACTCAAACTAATAACGAAAACTGAATGTGCATGATTTATTTTTCCTGAGTT
ATGCAATACATG-ACTCTTTTAAGTTATACATTGCTGCTTATATATATATATAAAGTAGCTGACTTGGTACTGTTTTCTA
TTCTCTTATAGATCAATCTTGATCCAACAGATTTTGTGAAAGAAATTTCTGGCAAATTTGGTCCATATCCCTTATCACAT
TCCAATGTCATAACATCTCTCAAGCTGGTAACCCATGAGGATACATATGGCCCTTTTGGATTTGTAGAAGGAACTCCTTT
TTGCGGCACATTGGAAAGCGGATGGGCTATAGTTGG---
>chrUn_2521
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--------------------------------------------------------AGAAGAAGAAGAAACAGAAGGAGA
ACAGGAGCAGTTGGAACAGACAGAAACCATGATTGACAGAACAGTAGTAGAAGAAGAAATAGAAGGAGAACAGGAGCAGA
AGAATGTAGTTACTATTCTTAGTCTCTT--AATTATTTATTCTTCATTCTTTTTATCTTGCAATTTATTTCTTGATTGGT
TTACTTTTTCAAGTTGTTACGTACGGGCCTTGGGGTGGAAATGGCGGGACTGCTCATGACATCAGGGCAGCATCTTCCCT
CCGTCTCAAAAGTGTGACAATTCCTTATGGCGATATCATCGATTCACTTACGTTTTCATATAGCGATCACAGTGGGCATG
TACACAGGGTTGGCCCATGGGGTGGTACTGGTGGTGCGAACAAATATACGGTGAGTGAACAAAACTTGTGT---------
-----------TTAAAAAAAATTGTGTCCACTCAAACTAATGTCGAAAACTGAATGTGCAGGATTTATTTTTCCTGAGTT
ATCTAATCCATG-ACTCTGTTAAGTTATACATTGCTGGTTATATATAAA---AAAGTAGCTGACTAAGTACTGTTTTCTA
TTCTCTTACAGATCAATCTTGATCCAACAGATTTTGTGAAAGAAATTTCTGGCAAATTTGGTCCATATCCCTTATCACGC
TCCAATGTCATAACATCGCTCAAGCTGGTAACCCATGAGGATACATATGGCCCTTTTGGATTTGTAGAAGGAACTCCTTT
CTGCGCCACATTGGAAAGCGGTTGGGCTATAGTTGG---
>SNPs
S--SSS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----SS-S---S---
-----------SS------------S--S--S----------SS----------------------SS------------
-S-SS--------------S-S-S-S-------S----S-----SS-----------S---S--S---S-SS--------
S-----S-------SS-S---S-S------S-----------S-S----------------S--SSS-----S-------
------------S---SS------SSS----S--S--------------------S----------------S-------
---SS--SS---S---S---S--SS------S--S---SS--S--------S---------------------SSSSS--
SSSSSSS-------S---SS----S--S------SS-----S-S-S---------S----------S--SSS-SSSS-SS
SSSSSSS----------------S---S-------S--------------------S----SSSS-----SS-SS-----
S-------S--S---------------------S-------SS-------------------------------------
--S---SS--S-S---S-S------S--S-----------S--SSSSSS-S-----S---SSS--S--------S-----
------SS--S--S----S------S-SS-SS----S----------------------S-----S----S---S-----
S------S----------------S----------------S----S-----SS-S-S----S--------SS-------
------------------------------------------------S-SS------S-S-------------------
S-----------------------------------S--------------S-------------------S-S-S---S
S--S----SS----S-S-----SSS-SSS---S---S---S---------------------------S-------S---
-----S-----SSS---S-SSSSS----S--------S-S----------------------------------SS---S
--------S-S---S-------S--------------------------------------S-S-S-S---S--S--S--
----S-----------S-S-S-S------S------S-----S------S--S-S-----S-------S--------S--
------S-------S-----------S---------S-S----------S-SS------S------SS------------
------------S----------------------------------------------S--S----S---SS-------
S------------S-------------SSSSSSSSS-----S----S---S--S----S-----S--------SSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S---------S-S-----S---
S---------------------------------S----S--S-------S-----SSS--------------------S
----S--------S-------S------SS------S-----S-------------S----S--S---------------
-------S-------S----S------------------------------S--------------------------SS
S-----S--------------------------------------------S----------------------S---S-
---S---S-----S------------------------------------------S-------SS--S-SSSSSSSSSS
SSSSSSSSSSS----S---S--S--------------------------S------S----------------S-SSS--
SSSS-SSSSSSSS-------------------S----------------------------------S-------S----
----------------SS----S---S----S---S-S-S------------SS--------------S-S------SS-
----------------------S----------S---------S------S-------S-------S-------------
----S---SS-------S--S---------------SSS
>forward_286
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--------------------------GGTTCTATCTCCGGCTGCTC----------------------------------
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>reverse_1106
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-----------------------------------------------------------------GCTTGGTCAAGGTGG
CTTTG---------------------------------------------------------------------------
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>forward_483
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---------------------------------------------------------------CAGCGATCGTCCATCCC
TAC-----------------------------------------------------------------------------
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>reverse_1614
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-------------CGTGGAAGCCTCGACGAATA-----------------------------------------------
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>forward_1243
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-----------------------TATTGCCTGTTCGACGCACT-------------------------------------
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>reverse_2619
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----------------------------------------------------------CAACAGGAGCAGGAGAACGT--
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