>input_sequence_55737
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--------------------------------------------------------ATGGCGAGCCTGAGCGTGCCTCCG
GTGCTCACGTCCCCGCGCCACGACGCCATCGCCCTCCACAGGGCCTTCAAAGGTACGCACGCACGCGCACACATAGAATC
ATACAAGCCTGT----CTACGATTCGTTTCATCACGTCGGTCTAATACC-------------------------------
-----------------GCAGGGTTCGGGTGCGACAGCACGACGGTGATCAACATCCTGGCGCACCGCGACGCGACGCAG
CGGGCGCTCATCATGCAGGAGTACCGGGCCATCTACCACCAGGACCTCTACCACCGCCTGTCCACCGAGCTCAGCGGGAA
CCACAAGGCATGCAAACTGCAAAAT------------------------GATACTAATATATACTTATAAATCACCTAGC
AA----------------------------------ATATCATGCAAAATGATAAGTCACACACACACAC----------
------------------------------------------------------------------AGCATAGCATAGTA
------TTGCTCCCGAAATGACTT-GTCTGCTTGGGTGTGGCGGTTCCTTCTCCAGAAGGCGATGCTGCTGTGGGTGCTG
GACCCCGTTGGCCGCGACGCCGCCATCCTGAACCAGTCCCTCAACGGCGACATCACCGACCTGCGCGCCGCCACGGAGGT
CATCTGCTCCCGGACGCCGTCGCAGCTGCAGATCATGAAGCAGACCTACCGCGCCCGCTTCGGCTGCTACCTCGAGCAGG
ACATCACCGAGCGCACCTACGGCGACCACCACAAGGTACGTCTTTGTTTGCCTCCACAGCACCATCGATAC--ATACGC-
---------TCATCTGTGCAGTGTTTGAACCTTTCATCATTTTGTGTGTTGCTC-------GTCGCTGGATGCAGCTTCT
GCTGGCGTACTTGGGGATCCCGCGGTACGAGGGCCCGGAGGTGGACCCGGCGGCGGCGGCGCGCGACGCGAGGGAGCTGT
ACCGCGCCGGCGAGAAGCGGCTCGGCACCGACGAGCGCGCCTTCATCCGCGTCTTCACCGAGCGCAGCTGGGCGCACCTC
GCCGCCGTCGCCGGCGCCTACCACCACCTGTACGCGCGCTCCCTGGAGAAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CCGTGAAGAGCGAGACGTCGGGGA
CCTTCGAGTTCGGGCTGCTGACGATCCTCCGGTGCGCCGAGAGCCCGGCGAGGTACTTCGCCAAGGCGCTGCACAAGGCG
ATGAAGGGGCTGGGCACCAGCGACACGACGCTGATACGGGTGGTGGTCACCAGGGCGGAGGTGGACATGCAGTACATCAA
GGCCGAGTACCACAAGAAGTACAAGCGCTCGCTGGCCGACGCCATCCACTCCGAGACCTCCGGGAACTACCGGACCTTCC
TCCTCTCCCTCGTCGGCCGTGACCGCTAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>chr3D_1_TraesCS3D01G479100
GCGACCCGTTACGGTGGATGCCACGTGTCAGTCACCCTTGACAAAAGCACTTCCATGACGCGCGATTATCGTCATGGAAG
TAGACACTTCCGTGATGATAATTTTGGTAATGTCATGAAACACTTCTACGACAGCACAGGTATGACTATCTTGATTCTGT
CATAAATTTGTCATGGATGTACATGCATGACAGAAAACGTGACCTACTGTGACAAACACGTATCATCACGAAAGTGTATT
TTTTTGTAGTGAAAGCTGAAGCAAGCCCGCAGTCCTCCTCCAAAGAGTTGGAGAAAATAAAGGCGGTTGTGGAGACTGAA
CGAGCCGCCTTTGAAACTGAAAAGGCGGCTTTGATCAAGCGTGCAGAAGACAGTGAGGGCCGGCTGAATCCAGTTACTGA
AGAACTGGCCGGGTTAAAATGCCTTATCTCCCAAATGACACAGGCCATATTTGGTAAGTAACTCTTTAGTCCATATTTGC
TCTGTGTGTACACATCGTTCTATTAGGGTTTTTTATCAACACATTACAAGTGAAGTGGATTTTCAATTAATTTTACGGGC
TATCATTTCTATCATCATGGCCCGTAGTAACGCACGGGCATTTTATTAGTTATAAATTAGTGCCCGGTGTGAGGTGGCGT
GACGCTATCTTTTTTCCCTTTTGAGAAGAAACTCAAGGGCATTACGTA------CAAATTACCGCCTGGAGTATCTGATA
CGCCACTTGGTCGATAAGGAGGCATATATTCTCCTTCCCTTTTCC-----CGTGATGGTGGTGGGGGTCGCCTCGCCGGC
CATGCATGCGCCCGCGTTGATCGCACGCAGCATACCATATGCGCACGGCGGCGTCGCCATCCATCGGTGATCC----CCC
GACGGGAAAGCTCAGCGTCTCCCGCTTTAAAACCCTCA-CCCCGGCCCCGTACGCACGCAGCACCTGCAGCACGCAATCA
CAGGCACAGGCAGCCCACGCCTCCTCCGATCACAGGCTCACGGCACGTCGAGGAGGATGGCGAGCCTGAGCGTGCCTCCG
GTGCTCACGTCCCCGCGCCACGACGCCATCGCCCTCCACAGGGCCTTCAAAGGTACGCACGCACGCGCACACATAGAATC
ATACAAGCCTGT----CTACGATTCGTTTCATCACGTCGGTCTAATACC-------------------------------
-----------------GCAGGGTTCGGGTGCGACAGCACGACGGTGATCAACATCCTGGCGCACCGCGACGCGACGCAG
CGGGCGCTCATCATGCAGGAGTACCGGGCCATCTACCACCAGGACCTCTACCACCGCCTGTCCACCGAGCTCAGCGGGAA
CCACAAGGCATGCAAACTGCAAAAT------------------------GATACTAATATATACTTATAAATCACCTAGC
AA----------------------------------ATATCATGCAAAATGATAAGTCACACACACACAC----------
------------------------------------------------------------------AGCATAGCATAGTA
------TTGCTCCCGAAATGACTT-GTCTGCTTGGGTGTGGCGGTTCCTTCTCCAGAAGGCGATGCTGCTGTGGGTGCTG
GACCCCGTTGGCCGCGACGCCGCCATCCTGAACCAGTCCCTCAACGGCGACATCACCGACCTGCGCGCCGCCACGGAGGT
CATCTGCTCCCGGACGCCGTCGCAGCTGCAGATCATGAAGCAGACCTACCGCGCCCGCTTCGGCTGCTACCTCGAGCAGG
ACATCACCGAGCGCACCTACGGCGACCACCACAAGGTACGTCTTTGTTTGCCTCCACAGCACCATCGATAC--ATACGC-
---------TCATCTGTGCAGTGTTTGAACCTTTCATCATTTTGTGTGTTGCTC-------GTCGCTGGATGCAGCTTCT
GCTGGCGTACTTGGGGATCCCGCGGTACGAGGGCCCGGAGGTGGACCCGGCGGCGGCGGCGCGCGACGCGAGGGAGCTGT
ACCGCGCCGGCGAGAAGCGGCTCGGCACCGACGAGCGCGCCTTCATCCGCGTCTTCACCGAGCGCAGCTGGGCGCACCTC
GCCGCCGTCGCCGGCGCCTACCACCACCTGTACGCGCGCTCCCTGGAGAAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CCGTGAAGAGCGAGACGTCGGGGA
CCTTCGAGTTCGGGCTGCTGACGATCCTCCGGTGCGCCGAGAGCCCGGCGAGGTACTTCGCCAAGGCGCTGCACAAGGCG
ATGAAGGGGCTGGGCACCAGCGACACGACGCTGATACGGGTGGTGGTCACCAGGGCGGAGGTGGACATGCAGTACATCAA
GGCCGAGTACCACAAGAAGTACAAGCGCTCGCTGGCCGACGCCATCCACTCCGAGACCTCCGGGAACTACCGGACCTTCC
TCCTCTCCCTCGTCGGCCGTGACCGCTAAGAGGCGATGATCGATCATCGATCTCGACGCCACATGGTGGTCCGCACCGCC
AAGACCGCCTTGCGTGATCGATTGGTCGGTCAGTCTACCTGTGTATATACATCTGTTTCCTCT--------------ATT
CAAGTGGCCAAGAAGCCAGGTCTGAATGCAATGGCTACTGCTCAGTATGTTCATGTTACCACTGAAATGAAATTGGCAAC
TACTGTC---TTTATTTATTACTCTATGCCTCAACAT---AGCCACGGAGGACCCCTCCTTTAACAGCACAAG-------
-------------------CACAGCCAGCATTATTGCCTTATTCGTTACTATGAGCA---TACAACACAGGGTGCCGAAA
GTTCAGGGACGC--GGGGATACCTTACACTACATCCTGATCACTATACAGGGATTCATGTCCTCTACTCGCAATAA---A
CTCGACGAGCGGTGATTCACATACGGCAAACTTTAGGCAGCCTAG-TAACACAACAACAGCAGAGCAG--------AAAC
ATCACGCAATAACAGACGGCGCACCGTAGCTAAACCACTTGCTGCTATATCAGTCAGTCTGTGGGCTTCGGCCCCACACT
CCGAGAAGCTGAATACGACTGCATAGCAGAGGTCGTCATGCCGATTGAGTGCTTTGTAAGGTCCAGGCTCTTCCTTGCGG
CAAACCAAATCATCCAAAAGAATCCGATCCAACCTGCACGAGATTTTATAACGTTAGCGCAGGTGATATTGGTAAAAAAA
AAACTTCGGACGTGGAAGTTGCGTTGGAGATATTATTCCTCTGGAATCAACATGGCCATTCTATGCTAACTTTTCCAGAT
ATGGAGCATCAATAAAGGAACAATAATTTGGGAACTTATTCAAAAGGACTGGACGATCGCATCTCTGCCTTAAAACTGAC
AATATATTCCACACGGACTGGCCGACCGCATCTCTGCCTAAAACTGACACTGCATTCCACATGATTGGCCAACCACGTCT
CCCCTTTCATAAAGTTCCATGGCATGGAGAAGTTGATTTGAACAGCTAAGGC
>chr3A_612
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATAAATTAGTGCCCAGTGTGAGGTGGCGT
GACGCTATCCTTTTTCCTTTTTAAGAAGAAACTCAAGGGTATTACGTAGTACTACAAATTACCGGCCGGAGTATCTGATA
CGCCACTTGGTCGATAAGGAGGCATATATTCTCCTTCCCTTTTCC-----TGTGATGGTGGTGGGGGTCGCCGGGCCGGC
CATGCATGCGCCCGCGTCGATCACACGCAGCATACCATATGCGCACGGCGGCGTCCCCATCCATGGGTGATCC----CCC
GACGGGAAAGCTCAGCGTCTCCCGCTTTAAAACCCTCGCCCCCGGCCCCGTACGCACGCAGTTGG------------TCA
CAGGCACCTCCAAGTCCAAACACAGGCGAAGA------------------------ATGGCGAGCCTGAGCGTGCCTCCG
GTGCTCACGTCCCCGCGCCATGACGCCATCGCCCTCCACAGGGCCTTCAAAGGTGCGT---------ACAAATAATGGAG
GA-----------------------CTCTTTTCATCCTGCCCAGCAACGATATGTGCTGCGTAACGGCTGACGGCCGGTG
GTGTACGTGTTGGTATTGCAGGTTTTGGGTGCGACAGCACGACGGTGATCAACATCCTGGCGCACCGCGACGCGGTGCAG
CGCGGGCTCATCATGCAGGAGTACAGGGCCATATACCACCAGGACCTCTACCATCGCCTATCGACCGAGCTCAGCGGGAA
CCACAAGGCATGCAAACTGCAAAATGAT------------------------------------TTATAAATCACCCAGC
AA----------------------------------ATATCATGCAAAATGATAAGTCACACAGACAGCATAGCATAGTA
TAGTATCCCTTTTCGAAAAAAGAAGAAGCATAGCATAGTATAGTATCCCTTTTCGAAAAAAGAAGAAGCATAGCATAGTA
CTGTATTTGCTCCCGAAATGACCT-CTCTGCTTGGGGGTGCCGGTTCCTTGTGCAGAAGGCGATGCTGCTGTGGGTGCTG
GACCCCGTGGGCCGCGACGCCACGATACTGAACCAGTCCCTCAACGGCGACATCGCCGACCTGCGCGCCGCCACGGAGGT
GATCTGCTCCCGGACGCCGTCGCAGCTGCAGATCATGAAGCAGGCCTACCGCGCCCGCTTCGGCTGCTACCTCGAGCAGG
ACGTCACCGAGCGCACCTACGGCGACCACCAGAAGGTACGTCTTTGTTTGCCTCCACAGCACCATCGATACGCATACGC-
---------TCATCTGTGCAGTGTTTGAACCTATCATCATTTTGTGTGTTGCTG-------GTGGCTGGATGCAGCTTCT
GCTGGCCTACCTGGGCATCCCGCGGTACGAGGGCCCGGAGGTGGACCCGTCGGCGGCGGCGCGCGACGCGAGGGAGCTCT
ACCGCGCCGGCGAGAAGCGGCTGGGCACCGACGAGCGGGCCTTCATCCGCGTCTTCACCGAGCGCAGCTGGGCGCACCTC
GCCGCCGTCGCCGACGCCTACCACCACCTCTACGCGCGCTCCCTGGACAAGGTGG-------------------CCTTCA
TCTCCAGCTTTGCTTGAAACTCCATGTGCAAATTTCTCAGGCTTTGCAATATGCATTGTCG-------------------
----------------------------------------------------CAGGCTGTGAAGAGCGAGACGTCGGGCA
CCTTCGAGTTGGGGCTGCTGACGATCCTCCGGTGCGCCGAGAGCCCGGCGAGGTACTTCGCCAAGGCGCTGCACAAGGCG
ATGAAGGGGCTGGGCACAAGCGACACGACGCTGATACGGGTGGTGGTCACCAGGGCGGAGGTGGACATGCAGTACATCAA
GGCCGAGTACCACAAGAAGTACAAGCGCTCGCTGGCCGACGCCATCCACTCCGAGACCTCCGGCAACTACCGGACCTTCC
TCCTCTCCCTCGTCGGCCGCGACCGCTAAGAGGCGATGATCGACCATCGATCTCAACG------------CCGCACCGCC
AAGACCGCCTTGCGTGATCGATTGGTCGGTCAGTCTACCTGTGTATGTACATCTGTCTCCTCT--------------ATT
CAAGTGGCCAAGAAGCCAGGACTGAATGCTAGGGCTACTGATCAGTATGTTCATGTTACCA--GAAATGAAATTGACAAC
TACAGTACGTTTTATTCATTCCTCTATGCCTCAACAACAGAGCCAGACAGAATAGCTTCATTTACAGCACAAAACCACAA
CCTAGCCCGCACTCGCCAACACAGCCGGCATTATTGCCTTATTCGTTACTATGAGTATACTACAACACAGGGTGCCGAAA
GTTCAGGGGCGAGTGGTGGTACCTTACGCTAAACCGGGATAACTATACACGGATTCATGTCCTCTACTCGAAATAA----
-----------GTGATACACATACGGCACGCTTTAGGCAGCACATATAACACAACAACAGCAGGGCAGCGAGGCGGCAAG
ACGACGCGATAACATACAGAGCATTGGGGCTAAACCAGTTGCTGCTATCTCAGTCAGTCTGTGAGCTTCTGCCCCACACT
CCGGGAAGCCGAATACGACTGCATAGCAGAGGTCGTCATGCCGATTGAGTGCTTGGTAAGGTCCAGGCTCTTCCTTGCGG
CAAACCAAATCATCCAAAAGAATCCGATCCAACCTGCATGAGATTTTATCACGTTAGCGCAGGTGATATTGGTAAAAAAC
C--CTTTGGACGTGAAAGTTGCATTGGAGATATCATTCCTGTGGAATCAACATGACCATTCTATGCTAACTTTTCCAGAT
ATGGAGCATCAATAAAGGAACAATAATTTGGGAACATATTCCAAACGACTGGACGATCACATCTCTGCCTTAAAACTGAC
AATATATTCCACACGGACTGGCCGACCGCATCTCTGCCTAAAACTGACACTGCATTCCACATGATTGGCCAACCACGTCT
CCCCTTTCATAAAGTTCCATGGCATGGAGAAGTTGATTTGAACAGCTAAAGC
>chr3B_727
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GATAAGGAGGCATATATTCTCTTCCCCTTTTCATATGATGTGATGGTGGTGGGGGG----TCGCCGGT
CATGCATGCTCCCGCGTCGATCACACGCAGCATACCATATGCGCACGGCGGCGTCGCGGTCCATCGGTGATCTCCGGCCC
GACGGGAAAGCTCAGCGCCTCCCGCTTTAAAACCCTCA-CCCCGGCCCCGTACGCAGGCAGCACCTGCAGCACGCAGCCA
CAGGCACAGGCAGCCCACAGTCTCGCTGCACGTTCCACTCAC-------------GATGGCGAGCCTCAGCGTGCCCCCG
GTGCTCACGTCCCCGCGCCACGACGCCATCGCACTCCACAGGGCCTTCAAAGGTACGCACACACACACAA---------C
ATACAAGCCCAGCTACCTACGATTCCTTTCATCCTCCTGTCTAGCAACGACGGCCGTGTTTTC-----------------
------------------CAGGTTTCGGGTGCGACAGCACGACGGTGATCAACATCCTGGCGCACCGGGACGCGGTGCAG
CGCGCGCTCATCATGCAGGAGTACCGGGCCATGTACCGGCAGGACCTCTACCACCGGCTGTCCACCGAGCTCAGCGGGAA
CCACAAGGCATGCAAACTGCAAAAATGATCACACGGCACATACCATGCAAAATTGTGCACCGCTCGATGCAGAGGCTAGG
CTTAATGGCTTATCCTCCTTTTCGGAAAAATTAAACATATCATGCAAAATGATAAGACACACACACAAGCACA-------
--------------------------------------------------------------------CACAACATGGTA
------TTGCTCTCGAAATGACTTGGTCTGCTTGTGTGTGGCGGTTCCTTCTGCAGAAGGCGATGCTGCTGTGGGTGCTG
GACCCCGTGGGCCGCGACGCGACGATACTGAACCAGTCCCTCAACGGCGACATCACCGACCTGCGAGCCGCCACGGAGGT
GATCTGCTCCCGGACGCCGTCGCAGCTGCAGATCATGAAGCAGGCCTACCGCGCCCGCTTCGGCTGCTACCTCGAGCAGG
ACATCACCGAGCGCACCTACGGCGACCACCAGAAGGTACGTCTTCGA----TCGTTC----CCATCCACGTCACGATTTT
TTTTCTTTCTCTCTGTACA--TGTCAGAATCTACCATTATATCGGCTGTTGATGA-------TGGCTGGATGCAGCTTCT
GCTGGCGTACCTGGGGATCCCGCGGTACGAGGGCCCGGAGGTGGACCCGGCGGCGGCGGCGCGCGACGCAAGGGAGCTGT
ACCGCGCCGGCGAGAGGCGGCTGGGCACCGACGAGCGCGCCTTCATCCGCGTCTTCACCGAGCGCAGCTGGGCGCACCTC
GCCGCCGTCGCCGGCGCCTACCACCACCTGTACGCGCGCTCTTTGGAAAAGGTAATGCTTCTTTTCTCCAGCCCCCTACA
TCTTCCAGCTTCCTTCATTTTCCACGTACAATCAGGCCTAGAAAGTAACGCTCCGGTTCCAACCGATTTGAGACTGCGAC
ACTTATTTTGAATCGGAGGGAGTAATAAAAAGGGCATCATCTATTGCTTGCACAGGCCGTGAAGAGCGAGACGTCGGGGA
CTTTCGAGTTGGGGCTGCTGACGATCCTCCGGTGCGCCGAGAGCCCGGCGAGGTACTTCGCCAAGGCGCTGCACAAGGCG
ATGAAGGGGCTGGGCACCAGCGACACGACGCTGATACGGGTGGTGGTCACCAGGGCGGAGGTGGACATGCAGTACATCAA
GGCCGAGTACCACAAGAAGTACAAGCGCTCGCTCGCCGACGCCATCCACTCCGAGACCTCCGGCAACTACCGCACCTTCC
TCCTCTCCCTCGTCGGCCGCGACCGCTAACACGATCT------------------------------------CACCACC
AAGACCACCTTGCTGATAGACCTGTGG-----GTCTACCTGTGTATATACATCTGTTTCTTCCGACTGTATGGAACAACT
CCAGTGACAAAGCGGCGAGGGGCGAACGCTATGGCTACTGCTCACTATGTTCATGTTACCACTGAAATGAAATTGACAGC
TACTGTC---TTTTTTTATCACTCTATGCCTCAACAT---AGCCACGGAGGACACCTCCATTTACAGCACAACACCACAA
CCTAGCCCGCACTC---------GCCGGCATTATTGCCTTATTCGTTACTACGAGCA---TACAACACAGGATGCCGAAA
GTTCAGGGACGC--GAGGATACCTTACACTAGACCGGGATAACTATACACGGATTCATGTCCTCTACTCGAAATAACATA
CTCGACAAGCGGTGACTCGCATACGACACGCTTTAGGCAGCATATATAACACAACAACAGCAGGGCAGCGAGGCGGAAAC
ATCACGCGATAACAGACAGCGCTGTGTAGCTAAACCACTTGCTGCTATCTTAGTCAGTCTATGGACTTCTGCCCCACACT
CCGAGAAGCTGAATACGACTGCATAGCAGAGGTCGTCATGCCGATTGAGTGCTTGGTAAGGTCCAGGCTCTTCCTTGCGG
CAAACCAAATCATCCAAAAGAATCCGATCCAACCTGCACGAGATTTTATCACGTTAGCGCAGGTGATATTGGTAAAAAAA
AAACTTCGGACGTGAAAGTTGCATTAGAGATATTATTCCTGTGGAATCAACATGACCATTCTATGCTAACTTTTCCAGAT
ATGAAGCATCAATAAAGGAACAATAATTCGGGAACATATTCCAAAGGACTGGCCGATCACATCCCTGCCTTAAAACTAAC
AATATATTCCACACGGACCAGCCGACCGCATCTCTGCCTAAAACTGACACTGCATTCCACATGATTGGCCAACCACGTCT
CCCCTTTCATAAAGTTCCATGGCATGGAGAAGTTGATTTGAACAGCTAAAGC
>chr1D_997
GAGCGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------TGGCGAGCCTGAGCGTGCCTCCG
GTGCTCACGCCCCCGCGCGATGACGCCGTCGCTCTCCACAAGGCCTTCAAAGGTACACA--GATGCAACGAACGATGAAC
TA-----------------------TTCCTTCCATCCTGTCTAGCAACAATCGATGTTGTCAGTG---TAACGGCCGGTG
GTGGTCTTGTATTG--TGCAGGTTTCGGCTGCGACAGCACGACGGTGACCAACATACTTGCTCACCGCGACTCGGCGCAG
CGCGCGCTCATCCTGCACGAGTACAAAGCCATGTACCATCAGGATCTCTACCATCGCCTAGCAACCGAGCTGAGTGGAAA
CCACAAGGCATGCAAAATGAACTACATTTTTTCATATTTACACATCCTAGCTAGGGATATTCTGTCCA------------
---------------------------------------AAAACTGAGTGG-----------------------------
----------------------------------------------------------------------------AGTA
------CTGCTCCCGAAACGAAC----CTGCTTGGCTGTGGT---------AGCAGAATGCTATGCTGCTTTGGGTCCTC
GACCCTGCTGGGCGTGATGCGACCATACTGAACCAAGCTCTCAACGGCGACATCACCGACCTGAGAGCCGCCACCGAGGT
TATCTGCTCCAGGACGCCGTCGCAGCTGCAGATCATGAAGCAAACCTACCGTGCGAGGTTCGGTTGCTACCTCGAGCATG
ACATCACCGAACGCACCTATGGAGATCATCAGAAGGTTAA--TTTTGCTTCTTGTTT----CCATCATCAC--ATACG-T
GCCTTTTCTTGATCTGTTCTGTGTTTGAATCTATCATCATTATTGTCTACTTTTTTCGTGTGTGGATCAATGCAGATTTT
GCTTGCGTACCTGGGAGTCCCACGCAACGAAGGCCCGGAAGTTGATCCTTCGGCGGTGACAGACGACGCGAGGGAGCTGT
ATAGGGCCGGCGAGAAGAGGGTGGGCACCGATGAGCGGGCCTTCATCCGCATCTTCACCGAAAGCAGCAGGGCACACCTG
GTGTCCATCGCCAACGCTTACCAGCACATGTACGCCCGGTCCCTGGAGAAGG----------------------------
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----------------------------------------------------
>chr1A_997
GAGCGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGGCGAGCCTGAGCGTGCCTCCG
GTGCTCACGCCTCCGCGTGATGACGCCGTCGCTCTCCACAAGGCCTTCAAAGGTACACAGAGATGAAACGAACGATGAAC
TA-----------------------TTTCTTCCATCCTGTCTAGCAACAATCGATGTTTTCTGTG---TAACAGCCGGTG
GTTTTCTTGTATTG--TGCAGGGTTCGGCTGCGACAGCACGACGGTGACTAACATACTTGCTCACCGCGACTCGGCGCAG
CGCGCGCTCATCCTGCACGAGTACAAAGCCATATACCATCAGGATCTCTACCATCGCCTAGCAACTGAACTGAGTGGAAA
CCACAAGGCATGCAAAATGAACTAGATATTTCCATATCTACACATCCTAGCTACGGATACATACATATCCTTCGTCTTAA
AA----------------------------------GTTAAAACTGAGTGG-----------------------------
----------------------------------------------------------------------------AGTA
------CTGCTCCCGAAACGAAC----CTGCATGGCTGTGGT---------TGCAGAATGCTATGCTGCTTTGGGTCCTC
GACCCCGTGGGGCGTGACGCGACCATACTGAACCAGGCTCTCAACAGCGACATCACCGACCTGAGAGCCGCCACGGAGGT
AATCTGCTCCAGGACGCCGTCGCAGCTGCAGATCATGAAGCAAACCTACCGCGCGAGGTTCGGTTGCTACCTCGAGCATG
ACATCACCGAACGCACCTACGGTGATCATCAGAAGGTTAGTCTTTTGTTTCTTGTTT----CCATCGTCATCACATAATT
GCCTTTTCTTGATCTGTTTTGCGCTTGAATCTATCGCCACTATTTGTCTAATTATTCGGGTGTTGATCAATGCAGCTTTT
GCTTGCGTACCTGGGAGTCCGGCGCAACGAAGGCCCGGAAGTTGATCCTTCGGCGGTGACAGACGACGCGAGGGAGCTGT
ATCAAGCCGGCGAGAAGAGGGTGGGCACCGATGAGCGGGCCTTCATCCGCATCTTCAGCGAACGCAGCTGGGCGCACATG
GTGTCCGTGGCCAACGCTTACCAGCACATGTACGCCCGGTCCCTGGAGAAGG----------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>SNPs
-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S--------------
---------S-------S----S----------------S------------------------S-S-------------
--------------------------------------------------S-----------------------------
-----------------S----S---------------------------------------------------------
----------------------------------------------------------------------------S---
------------------SS-S--S----S--SSSSSSSSSSSSSSSSSSSSSSS-------------------------
------------------------------------------------------------S-----S--S-SSS-SS-S-
---------SSS-------------S--------SSSS-SS-SSSS--S-------------------------------
--------------------------------------------------------------------------S-----
--S-----------------------------S-----------------------------------------------
------------------------------------------------------SS------------------------
-------------------------------------------------------------------SS-----------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------------------S----S-----------------------------------------------------
S-------------------------------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------S--------------------S---------S----------------
----------S---------------------------------------------------------------------
----------------------S---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------S-----------------------S----------S---SSSSSSSSSSSS----------
--------------------------------------------------------------------------------
--------------------S--------S---------------------------------------------S----
-----------------------------------------------------S-----S--S---------S-------
--------------------------S-----------------------------------------------------
-------------------------------S-S-SS---S--------S--------------------S---------
------S---------------------SS-----------S--S------------------S----------------
-------S---------S-----SS-----------------------S--------------------S----------
------------------------------------------------------S-------------------------
-------------------------------------------------S------------------------------
--------------S-------S-----------------S-------------S-------------------------
-----------------------------------S-----S----------------S---------------------
--------------------------------------------------------------------------------
-------------------------------------------------S--
>forward_323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CGGTTGTGGAGACTGAA
CGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_1707
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------CCTGAACCAGTCCCTCAACG----------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>forward_326
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTGTGGAGACTGAA
CGAGCC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------
>reverse_2624
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------GAACTACCGGACCTTCC
TCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>forward_446
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------TCTCCCAAATGACACAGGCC----------------------------------
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----------------------------------------------------
>reverse_2821
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------TCTGAATGCAATGGCTACTGC---------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------
