>input_sequence_55679
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--------------ATGTCGCTCCGGCGCCTCCTAGGCCTTTCCGCCGCCGTCTCCGACCGCCTAAACCACTCCCTCTCC
ACCTCCACGGATGCCTACTCCCGTCCTCCCTGGATCTTGCTCGACCAGGTGATGCTGACCACCGGGTCGGCAGCACTGGG
CGCGACCGTGCGCATCGCCGAGCCCCCGCGCTTCTCCGCCCTCACCGTGCCGGCGCTCCTGGTCGACACCGGAGCCGGCC
CCGCCCCCCAACAGTGACGTCACACAACTCCTCATCGGCCGCATCTGCTCCACCAGCGCCGACGGCCTCCTCTTCCTTAT
CGTCTACGATCTCCACGCCACGGCCCCCATCCTCGCCAAGCAGGGCCCCAATCATGTGCGCCGGCTGACCGGCCTCGACC
CCGGGCACACCCCAGACATCACGCGCTTCCTCTGCAACCCTCTCACCGGCCAACTGACCCGCCTCCCGGCCA-------T
CGGCGCCGGCCGGGAGAAGTTCGGGTGCGGCCCTCACATGGGCGTCCTAACCCAAGCCGGTCGCGCGCACGGGGA-----
-TCCCGGCAGGCTCGCCGTCGCCGAGCTGCAGGGGAACATGATGCTCCGCTTTCTCTCGGACAGGGCCAAGTGGGAGG--
------TCGCGGTCACCGCACCGTGGCAACTCCCGCTCGCCCGGCAGTTTTACTCCGAGACGGGCCGGAC---TGACCAA
GAAGCGTTCGCCTTCGGCGGACGGCTGTGGTGGGCTGACCTGAGCTGGGGCGCCGTCTCGGCCGACCCGTTCAGCGACCG
GCCGGAGCCCCGCTTCGTGGAGCTGCCGAGGGGTAGCGTGGTGCCTGCACGCCCAGAGCGAGCGGCAGGGTGGCTTGACC
TGGAAGGCATGAAGGCCGTGTCCAAAGCT------GCACTGGGCAGGTACCGGCGCATGGGGGTTAGCGAGGGAAGGGTG
CGCTACGTCGAGGTGTGGGAGCGCGAGCCGTTCGTGCTCAGCTCCTATGCGGTGGACGACGAGGGTGGCGGCTGGACGCT
GGAGCACCGCGTGGTGCTCAGCCGTCTCTGGGCGGATGGAGACCACCCGTGGCTGCCATTGCCGGAGAAGACGATGCCAC
AAATTGGCGCCCTTGACCCACTGAACGGCAACGTCATCTACCTGACGGTCGGCATGCACATCATCGGCGTGGACATGAGC
AAGGAGGAGGTGATTGGGAGCTCTCTGCACAACGGCTCGACGTTCTGTG-------TACCATGCATGCTTCCACCCTCGC
TTGAATCGACCCGGATCCATGCCGCAGGTAATCGCTTCAATTGGTACTAA------------------------------
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>chr6A_1_TraesCS6A01G097300
GTACAAAGCCGCCGACAACAGCCACCAGATCTGGAGAGGGAG-CCTCAGGGGACCTTTTGGTGGCCAATGCAATCCATAG
CTCAAGTGGTCGGCTGATGTCGGCATTGCCGGATGGCC-CTGACCACATGGAGAATGCCACCACCGGCCTAATTAGCCAA
ATCGTCCCATCCAGGGCCACCCGTGACAGGGAGACACC------------------------------------------
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-------------------CCTGTCAAGGAAGGCAGTTG-CCCTGGAGCGAAGCAAACCCAGATCCACTGCACACCCACC
AAAAAACACCCTGTTGTCACCTTCCGTGGGGCACGCACGGGCATTGCCGACGTCCCCTCTGGCGGCAGCTATGTATGGAA
GGGTTTTTCCGCTAGAAGTATTTAACCCCAGAAGATGTTCAATGATTATTTGTAGTAATTTTCGCACAGGGAACACATGC
TTTATGTTCATGAGTCACGGTTTATTTGAAAAGGCAGGTTTTCCATCTGGCATTTTATTTTGATCTAGTTCAAATTTTCT
AACTTGTTTTTTGCCCAAAATGTTCCTACCGTAATTTCTGAAAATTCACACGCTAGATGAATTTTCATTTTTGAGACGAG
CAAATTGTAAGTTTTGAGATTGCTGAGACAGGGAAAGAGGACGGTGTGAGTGGGGTTCTAGCGGACAACCGTCGAATAGA
GGCATAGAGCACAAAGCCAC-CCAGCAA-TTTTTGGCGGGAAAACGATGACGTATGCCCAGCACAGGCC-----------
----------CGTTCAAAACCATCTTTT-GCAGAGATTAGACTACCGACATGCGAATGCTGTGCATAGACCAGGCCCGTG
TAGACTGTAATCACTGACCGGTGGGCTC-GGTAGAGGTGTAAACGTGAGTACGCAGTGGAACAACCCCACGCAGCTTTCA
TCAGCGCCTGCCACCTC-----------C------AACCACCCCCCATATCT----CGGCTGTGTGCACCGAGTCCACGA
GAG--------CC--GAGGCCTCTTTTACCATCGGAATTCATTCTGCCGTGCTCT----CTC------GTCGCCTTA---
-CCGCAGCATCACGATGTCGCTCCGGCGCCTCCTAGGCCTTTCCGCCGCCGTCTCCGACCGCCTAAACCACTCCCTCTCC
ACCTCCACGGATGCCTACTCCCGTCCTCCCTGGATCTTGCTCGACCAGGTGATGCTGACCACCGGGTCGGCAGCACTGGG
CGCGACCGTGCGCATCGCCGAGCCCCCGCGCTTCTCCGCCCTCACCGTGCCGGCGCTCCTGGTCGACACCGGAGCCGGCC
CCGCCCCCCAACAGTGACGTCACACAACTCCTCATCGGCCGCATCTGCTCCACCAGCGCCGACGGCCTCCTCTTCCTTAT
CGTCTACGATCTCCACGCCACGGCCCCCATCCTCGCCAAGCAGGGCCCCAATCATGTGCGCCGGCTGACCGGCCTCGACC
CCGGGCACACCCCAGACATCACGCGCTTCCTCTGCAACCCTCTCACCGGCCAACTGACCCGCCTCCCGGCCA-------T
CGGCGCCGGCCGGGAGAAGTTCGGGTGCGGCCCTCACATGGGCGTCCTAACCCAAGCCGGTCGCGCGCACGGGGA-----
-TCCCGGCAGGCTCGCCGTCGCCGAGCTGCAGGGGAACATGATGCTCCGCTTTCTCTCGGACAGGGCCAAGTGGGAGG--
------TCGCGGTCACCGCACCGTGGCAACTCCCGCTCGCCCGGCAGTTTTACTCCGAGACGGGCCGGAC---TGACCAA
GAAGCGTTCGCCTTCGGCGGACGGCTGTGGTGGGCTGACCTGAGCTGGGGCGCCGTCTCGGCCGACCCGTTCAGCGACCG
GCCGGAGCCCCGCTTCGTGGAGCTGCCGAGGGGTAGCGTGGTGCCTGCACGCCCAGAGCGAGCGGCAGGGTGGCTTGACC
TGGAAGGCATGAAGGCCGTGTCCAAAGCT------GCACTGGGCAGGTACCGGCGCATGGGGGTTAGCGAGGGAAGGGTG
CGCTACGTCGAGGTGTGGGAGCGCGAGCCGTTCGTGCTCAGCTCCTATGCGGTGGACGACGAGGGTGGCGGCTGGACGCT
GGAGCACCGCGTGGTGCTCAGCCGTCTCTGGGCGGATGGAGACCACCCGTGGCTGCCATTGCCGGAGAAGACGATGCCAC
AAATTGGCGCCCTTGACCCACTGAACGGCAACGTCATCTACCTGACGGTCGGCATGCACATCATCGGCGTGGACATGAGC
AAGGAGGAGGTGATTGGGAGCTCTCTGCACAACGGCTCGACGTTCTGTG-------TACCATGCATGCTTCCACCCTCGC
TTGAATCGACCCGGATCCATGCCGCAGGTAATCGCTTCAATTGGTACTAAGCTG----------CATGCTTACATAGCTT
CTTAGTTTTACATAAGCTTTGAAGTTTGAACGCCATGTGAATGGGTGCATTGTG--------------------------
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--------------------------------------------TTGCATATGAGTTCTTTCCTCTGTGATCTTATTTCA
ATGAGCCTGTCTGTCT----ACTGGTGCTCCAAGAGTAGGATTTGTTGATCATAATGTGAGATTGTCGAGTAAAGCCGCT
CTCTTTATAACTGTAAGTATAGATTTTGCTGACTACTCGGATACGACTAGGATGGGGAACAGAAGTTCTGAAAAGAGATT
TTGTTTG-TTTTCTTTACTTTGCAAATATGCTCTGATTGTGAATTAGTTAGATGCATGACAAATTGTGATGCATTTGTCT
GAATCTTTCTTCTTCTTTTTTTGTGAGGGACATTTGTCTGAATTCGATGTATGAGAAATTGTGATGCATTTGTCTGACGT
TGTAACATAAGTTTTAGTCAAGGAATATGATGTACCAAAAGTGATTAGTGTTGCTGGATAATGCCTACATTTCCCTCTCT
G--CATAACTAGAGAATAACTATGTCAGGACCCCGACTCAATGCCACATCGATCTAGCATGTAACACCTCATATCACTTT
GCGGCCTCACGCACGGTATTCCCACGGGTGTCGCCTTACCTTTGCCCGGGACCGTTTGCGCCTTTTGGCACACGTATATG
ACAGTGTCGCTAGCATCCATATGATAAGGAGCCCGGGCTGACATGGCTAGTCGTAAACCCAAAGTGGCACAGACTTACAG
GGACAGGCATCCATGACCCAGCTTCGAACGTGTCGGTCATCAGCAAGTGGGTCCGGGCTGTAGCACTGGGCTAGCAGGAC
TCCGGTAAACCGGGCTGTAGCGGGCTAACAGGACTTCGGTACTCAAAGCGTGACATTTCCCCGAAGGGACAGACACAGGA
ACGAAGAAGGACACATGCCGGCCAGCCTAAGTGTTCCAGAGCAGTAGCGAGCTACCATGGCTCGGTGGAAACACTAGGAG
ACATTTCCCGGTAAGAG
>chr6D_1
GTACAAAGCCGCCGACAACAGCCACCATATCTGGAGAGCGGGCCCTCAGGGGACCTTTTGGTGGCCACTGCAATCCATAG
CTCAAGTGGTCGGCTGATGCCGCTACCTACCAGATGGCGCTGACCACATGGAGAACGCCACCACCGGTCTAATTAGCCAA
ATGCCACCACATTGAGCACTCCTTTGGGAATCTGCACTGCCGACTCATGTCGCTACTGCTTCATTGTGTTAGAAACCATG
TGTTTGGCCCGTCACTAGCCCGCTCGGACCCAGCCACTGGTAATTATAAGCCCCGACCATGGCGCTGGCCACACAACTAC
CATGGCCATCAGCAGTGCAGGAAATTGACCTAGGGTCGCCGCCCCGGTGCCCGCGCTTCGCCGCTAGCTAAACCCCATCG
CCGGAGCATTAGCATCGTCAATGCACACCATGTACACCATGGATGGTACCACCTGAGCACATCCAGATCAACAGCAGGTC
GGCCCCCCCCTCGCGTGGTGGGGATAGCATCCAGGGGTCCACTACGCACACAAGGCAACCCCTCGAGGTCCCAAATCAGT
CGCAACTGCCCATCATCTTCCCATCCAGGGAGGCAGTTGCCCCTGGAGTGGAGCAAACCCAGATCCATCACACCCACTAG
-AAAAACGCCCCGCTGTCGCCTTCCCTGGGGCACGCATGGGCATTGTTGGCGTCCCCTCTAGCGGCGGCTATGCAGGGGA
GGGGTTTTCCTCTAGAAGCAGTTAAGCCTGGAAGATGTTCAATGAGTATTTGTAGTAATTTCCGCACATGGAACACATGC
TTTCTGTTCATAAGTCACGGTTTATTTTAAAAGACAGGTTTTCGGTCTGGCGTTTTATTTTGTTCTC--TCAAATTTCCT
G--TTGTTTTCTGCCGAAAATGTTCCTACCGGAATTTCTGAAAATTCACAGGCTGGATGAATTTTTATTTTTGAGACAAG
CAAATTGTAATTTTTTAGATTGCTGAGCCGGGGAA-GAGGACGGTATGACTGGGGTTCTAGCGGACAACCGTCGAATAGA
GGCA--GAGCACAAAGCCACTCCAGCAA-TTTTTGGCGGGAAAACGATGACATATGCCCAGCACAGGCC-----------
----------CGTTCAAAACCATCTTTT-GCAGAGATTAGACTACCGACATACGAATGCTGTGCATAGACCAGGTTCATG
TAGACCAACCTCACTGACCGCTGGGCTC-GATAGAGCTAT-AACGTGAGTATGCAGTGGAACAACCCCACGAAGCTTTCA
TCAGCGCCTGCCACCTC-----------C------AACAATCCCCCATATCT----CTGCTGTGTGCACCGAGTCCACGA
GAG--------CC--GAGGCCTCTTTTACCATCGGAAA-CCTTCTGCTGTGCTCT----CTC------GTCGCATTA---
-CCGCATCACCACGATGTCGCTCCGGCGCCTCCTAGGCCTTCCCGCTGCCGTCTCCGGCCGCCTAAGCCGCTCCCTCTCC
ACCTCCACGGGTGCCTACTCCCGTCCTCCCTGGATCTTGCTCGACCAGGTGACGCTGACCACCGGGTCGGCAGCACTGGG
CGCGTCCGTGCGCATCGCCGAGCCCCCGCGCGCCTGCACCCTCACCGTGCCGTCGCTCCTGGTCGACGCCGGCGCCGGCC
CCGA-CCCCGACAGCGACGTCACGCAACTCCTCATCGGCCGCGTCTGCTCCACCAGCGCCGACGGCCTCCTCTTCCTCAT
CGTCTACGATCTCCACGCCACGGCCCCCATCCTCGCCAAGCAGGGTGCCAACCATGTGCGACAGCTGACCGGCCTCGACC
CCGGGCACACCCCAGACATCACGCGCTTCCTCTGCAACCCTCTCACCGCCCAACTGACCCGCCTCCCGGCCA-------T
CGGCGCCGGCCGGGAGAAGTTCGGGTGCGGCCCTCACATGAGCGTCCTCACCCAATCCGGTCGCGCGCACGGGGA-----
-TCCCGGCAGGCTCGCCGTCGCCGAGCTGCAGGGGAACATGATGGTCCGCTTTCTCTCGGACACGGCCAGGTGGGAGGTC
GCGGACTCGCGGTCACCGCGCCGTGGCAACTCCCGCTCGCCCGGCGGTTTTACTCCGAGACGGGCCGGAC---TGACCAA
GAAGCGTTCGCCTTCGGCGGACGGCTGTGGTGAGCTGACCTGAGCTGGGGCGCCATCTCGGCCGGCCCGTTCAGCGACCG
GCCGGGGCCCCGCTTCGTGGAGCTGCCGAGGGGCAGCGTGGTGCCAGCACGCCCAGAGCGGGCGGCAGGGTGGCTTGACC
TGGAGGGCATGAAGGCCGTGTCCAAGGCT------GCGCTGGGCAGGTACCGGCGCATGGGGGTAAGCGAGGGGAGGGTG
CGCTACGCCGAGGTGTGGGAGCGTGAGCCGTTCGTGCTCAGCTCCTATGCGCTGGACGACGAGGGCGGCGGCTGGACGCT
GGA-CACCGCGTGGTGCTCAGCCGGCTCTGGGCGGGTGGAGACTACCCGTGGCTGCCCTTGCCGGAGAAGACGACGCCAC
AAATTGGCGCCCTTGACCCACTGAACGGCAACGTCATCTACCTCACGGTCGGCATGCACATCATCGGCGTGGACATGAGC
AAGGAGGAGGTGATTGGGTGCTCTCTGCACAACGGCTCCACGTTCTGTG-------TGCCATGCGTGCTTCCACCCTCGC
TTGAATCGAGCCGGATCCATGCCGCAGGTAATCGATTCAATTGCTATTAAGCTG----------CATGCTTACATAGCTT
CATAGTTTTACATAAGCTTTGAAGCTTGAACGCCTTGTGAATGGGTGCATTGCATATGGAGTCAATTGCAAGAAACCACC
ACATTTGTGGCTAGGTTTGCACAAAACCACCAACTCATTAATCTGTTGCAAAAAACACCGCAAAATCACTTAAGTCGTTG
CAAAAAAGCACTGATCGGGTGATTTGGCTCATTTAATCACTTTCTGACAGATAGGACCGAGTTGTAAGGTGCTGACTTGG
CAACCAAATATCATACACATCCTTGTATCTAAAAATGAAAAGCAATCAAACCCCTCCTCCCAATCCCCGTGCGTTGCTCC
ATCTGCTCCCACCGGCTCCGGCGCCGCCATCGGCTCCCGTCGCCTTGCCGCCCCCACTGGCTCCCGTCGCCGCCGTCGGA
AGCCTCCGGCGCCGCCACCGGCTCCCGTCGCCGCCGTCGGAAGCCTCCGGCGCCGCCACCGGCTCCCGTCGCCGCGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCGTCGGAAGCCTCCGGCGCCGCCACTGGCTCCCGTCGTCGCGCCGCCCCCACTGGCTCCCGTCGCCGCCGTCGGAAGCC
TCCGGCGCCGCCACCGGCTCCCGTCGCCGCGCCGCCCCCACTGGCTCCCGTCGCCGCCGTCGGAAGCCCACCCGCTGCCC
TCCCCTCGATGGCGCAGACGCCGCCGCGAGCGCTTCTGCCGTGGCAGCGCCAGAGCGGCCTCAGGCTCAAGCTCATCCTC
TTCCATGGAGGAGGGCGACGGGAACGGCTTGTCGAGCAGGTGGAGCTCGTCGCCTCCTCCCCCTCCACTCTCTTCGTCGA
CCACATCAGAGGAGACTGTCGCTCCTCCGCTTCGGCTCCCGACGCGTGCTCCACATCGCTGCAGCACTGGCAGGCCAACG
CGTCGAAAATGCGCACACCCCGGCCGCCTCCTCCCCCTCTACCACGGCCGTACCCGTCTCCGACGCCGACGAGGGCGCCG
CCGTGCCTACCGGACAGCAGGGCCAGTGCGCTGAGGTCGTCCACACCGAGGGGGCTGATTGCACTTTTTAAAAGATCTAG
GGGGTGTGTTTGTCAATGTTTTGCCAAGTCAGCTCTTGACAGCCAGGCCCCACTTGTCAGAAAGTGATTAAATGAGCCAA
ATCACCCGATCAGTGCTTTTTGCAACGACTTAAGTGATTTTGCGGTGTTTTTTGCAACGGATTAACGAGTTGGTGGTTTT
CTGCAAACCTAGCCACAAATGTGGTGGTTTCTTGCAATTGACTCTTGCATATGAGTTCTTTCCTCTGTGATCTTATTTCA
ATGAGC----CTGTCTGTCTACTAGCGTTCCAAGAGTAGGATTTGTTGATCATAATGGGAGATTGTCGAGTAAAGCCGCT
ATCTTTATAACTGTAAGTATAGATTTTGCTGACTACTCGGATACGACTAGGATGGGGAACAGAAGTTCTGAAAAGAGATT
TTGTTTG-TTTTCTTTCCTTTGCAAATATGCTCTGATTGTGAATTTGTTAGATGTATGGCAAATTGTGATGCATTTGTCT
GAATTCA---------------------------------------ATGTATGAGAAATTGTGATGCATTTGTCTGACGT
TGTAACATAAGTTGAAGTCAAGAAATATGATGTACCAAAAGCGATTAGTATTGCTATATAATGCCTACATTTTTCTTTCT
ATACATAACTAGAGAATAACTAT---------------------------------------------------------
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>chr6B_155
CCATAATCA-----------------------------------------------------------------------
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----TCCCAACCAGGGCCTCCTGTAACGAGGAGAGACC------------------------------------------
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-------------------CCCGTCGAGGGAGGCAGTTT-CCCTAGAGCGGAGCAAACCCAGATCCACCGCGCACCCACC
AGAAAACGCCCCGCTGTCGCCTTCCCTGGGGAACGCACGAGCATTGCCGGTGTCCCCTCTAGCAGCGGCTATGAAGGGGA
G--------------------TTAAGCCCAGAAGATGTTCAATGAGTATTTGTAGTAATTTCCGCACATGGAACACATGC
TTTCTATTCATGGGTCACAGTTTACTTGAAAAGACAGGTTTTCGGTCTGGCATTTTATTTTGTTCTAGTTCAAATTTC--
----TGTTTTCCGCCGAAAATGTTCCTACCGGAATTTCTGAAAGTTCACAGGCTGGATGAATTTTCATTTTTGAGACAAG
CAAATTGTAAGTTTTGAGATTGCTGAGACGGGGAA-GAGGACGGTATGACTGGGGTTCTAGCGGACAACCGTCGAATAGA
GGCATAGAGCACAAAGCCACTCCAGCAA-TTTTTGGCGGGAAAACGATGACGTATGCCCAGCACAGGCC-----------
----------CGTTCAAAACCATCTTTTTGCAGAGATTAGACTACCGACATGCGAATGCTGTGCATAGACCGGGTCCATG
TGGACTGTAATCACTGACCTGTGGGCTC-GGTAGAGGTGTAAACGTGAGTGCGCAGTGGAACAACCCCACGCAGCTTTCA
TCAGCGCCTGCCACCTCCAA-----CCAC------C------CCCCATACCT----CAGCTGCGTGCACCGAGTCCACGA
GAG--------CC--GAGGCCTCTTTTACCATCGGAATTCATTCTGCCGCGATCT----CTC------GTCGCCTTA---
-CCGCAGCATCACGATGTCGCTCCGGCGCCTCCTAGGCCTTTCCGCCGCCATCTCCGGCCGCCTAAGCCGCTCCCTGTCC
ACCTCCATGGGTGCCTACTCCCGTCCTCCCTGGATCTTGTTCGACCAGGTGACGCTGACCACCCGGTCGGCAGCACTGGG
CGCGTCCGTGCGCATCGTCGAGCCCCCGCGCTTCTCCGCCCTCACCGTGCCTGCGCTCCTAGTCGACGCCGGCGCCGGCC
CCGA-CCCCGACAGCGACGTCACGCAACTCCTCATCGGCCGCGTCTGCTCCACCAGCGCCGACGGCCTCCTCTTCCTCAT
CGTCTACGATCTCCACGCCACGGCCCCCATCCTCGCCAAGCAAGGTGCCAACCATGTGCGCCAGCTGACCGGCCTCGACC
CCGGGCACACCCCAGACATCACGCGCTTCCTCTGCAACCCTCTCACCGGCCAACTGACCCGCCTCCCGGCGA-------T
CGGCGCCGGCCAGGAGAAGTTCGGGTGCGGCCCTCACATGGGCGTCCTCACCCAAGCCGGTCGCGCGCACGGGGA-----
-TCCCGGCAGGCTCGCCGTCGCCGAGCTGCAGGGGAACATGATGCTCCTCTTTCTCTCGGACACAGCAGAGTGGGAGG--
------TCGCGGTCACCGCGCCGTGGCAACTCCCGCTCGCTCGGCGGTTTTACTCCGAGACGGGCCGGAC---TGACCAA
GAAGCGTTCGCCTTCGGCGGACGGCTGTGGTGGGCTGACCTGAGCTGGGGTGTCATCTCGGCCGACCCGTTCAGCGACCG
GCCGGAGCCCCACTTCGTCGAGCTGCCGAGGGGCAGCGTGGTGCCAGCACGCCCAGAGCGGGCGGCAGGGTGGCTTGACC
TGGAGGGCATGAAGGCCGTGTCCAGAGCT------GCACTGGGCAGGTACCGGCGCATGGGGGTCAGCGAGGGAAGGGTG
CGCTACGCCGAGGTGTGGGAGCGTGAGCCGTTCGTACTCAGCTCCTTTGCGCTGGACGACGAGGGCGGCGGCTGGACGCT
GGAGCACCGCATGGCGCTCAGCCGGCTCTGGGCGGGTGGAGACTACCCGTGGCTGCCCTTGCCGGAGAAGACGACGCCAC
AAATTGGCGCCCTTGACCCACTGAACGGCAACGTCATCTACCTCACGGTCGGCATGCACATCATCGGCGTGGACATGAGC
AAGGAGGAGGTGATTGGGAGCTCTCTGCACAATGGCTCCACGTTCTGTG-------TATCATGCGTTCTTCCACCCTCGC
TTGAATCGACCCGGATCTATGCCGCAGGTAATCGATTCAATTGCTACTAAGCTG----------CATGCTTACATAGCTT
CTTAGTTTTACATAAGCTTTGAAGCTTGAACGCCTTGTGAATGGGTTCATTGCATAT-----------------------
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----------------------------------------------------GAGTTCTTTCCTCTGTGATCTTATTTCA
ATGAGC----CTGTCT----ACTAGTGTTCCAAGAGTAGGATCTGTTGATCATAATGTGAGATCGTCGAGTAAAGCCACT
ATCTTTATAACTGTTTGTTTTCTGAAAAGAAATTGT-------------GGATGGGAAACAGAAGTTCTGAAAAGAGATT
TTGTTTGTTTTTCTTTCCTTTGCAAATATGCTCTGATTGTGAATTAGTTAGATGCATGACAAATTGTGATGCATTTGTCT
GGAT----------------------------------------------------------------------------
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>chr1B_676
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-------------------C-CCAGCAA-TTCTTTGGCGGGAAACCATGACGTATGCCCATCACAGGCCGCACAGCCAAT
GGGACGACGCCTTTCGAAACTAA-----------------------------------CTATGCACAGACCTGGTCCATG
TAGACCAGC-TCCCTGACCTGTGGGCGCTGAAAGAACTGT-GACTGGAGTACGCAGTGAAACAACCCCACGCAGCTTTCA
TCAGCGGCTGCCACCAC-----------C------CACTACCCCCCATATCT----TAGCTGTGTGCACCAAGTCCATGT
GAA--------CCGAGAGGCATCTTTTACCATCGGAAATCCTTCTGCTCTGCTCTCTCTCTC------GTCACCTCA---
-CCGCATCACCACCATGTCGCTCCGGCGCCTCCTGGGCCTTTCCGCCGCCGTCTCCGGCCGCCTAAGCCGCTCCCTCTCC
ACCTCCACGGCTGCCTCCTCCCGCCCTCCCTGGATCTTGGTCGACCAGCTGTCAGTGGCCGCCGGGTCG---GCGCTGGG
TGCGTCCGTGCGCATCCTCGAGCCGCCGCGCTTCTCCACCATCACCGTCCCGGCGCTCCTGGTCGACACCAGCGCCGGCC
CCGA-CCCCGACAGCGACGCCACGCAACTCCTCGTCGGCCGCGTGTGCTCCGCCAGCGCCGACGGCCTCCTCCTTATCAT
CATCTACGATCTCCGCGCCACGGCTCCCATCCTCGCCAAGCAGGGCGGCAATCATGTCCGCCAGCTGACCGGCCTCGTCC
GCGGGCACACCCCGGACACCACGCGCTTCCTCTGCAACCCTGTCACCGGCCAACTGACCCGCCTCCCGGTCA-------T
CAACGTAGGCCGGAGGCGGCTCGTGTGCGGCCCTCACATGGGCGTCCTCACCCAAGCCGGTCGCGGGCACGGAGACGGAA
CTCCCGACAGGGTCGCCGTCGCCGAGCTGCAGGGGAACAGGATGCTCCGCTTTCTCTCGGACACGGGCGAGTGGGACG--
------TCGCGGTCACCACGCCCTGCCAACTCCCGGGCGTCCGGCGGTTTTACTCGGAGACGGGCAGGAGGTTTGACCAA
GAGGCGTTCGCCTTCGGCGGCCGGCTGTGGTGGGCTGACCTGAGCTGGGGCGCCATCTCGGCCGACCCGTTCAGCGACCG
GCCGGAGCCCCGCTTCGTGGAGCTGCCGAGGGGCAGCGTGATGCCTGCACGCCCAGGGCCGGCGCCAGGGTGGCTTGACC
TGGAGGGTTTTGAGGCCCTGTCCAAAGAC------GCGCCGGGCAGGTACCGGCGCATGGGGGTCAGCGAGGGAAGGTTG
CGCTACGCCGAGGTGTGGAACCGGGAGCCGTTCGTGCTCAGCTCCTTCACGCTCGACGACGAGGGCAGCGGCTGGACGCT
GGAGCACCGCGTGGTGCTCAGCCGGCTCTGGGCGGATGGAGACTACCCATGGCTGCCCTTGCCGGAGAAGACGACGCCAC
AAATTGTCGCTCTTGATCCACTGAACGGCAATGTCATCTACCTGGCGGTCGGCATGCACCGCATCAGCGTGGACATGAGC
AAGCAGGAAGTGATTGGGAGCTTTCTGGACAGAGGAGCCG----------GGTGCATACCATGCGTGCTTCCACCGTGGC
TTGAATCCAGCCGGACCTCTGCCGCAGGTAATCGCTACATTG--------------------------------------
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>chr1B_676
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-------------------C-CCAGCAATTTTTTGGCGGGAAAACGATGACGTATGCCCATCACAGGCTGCGCAGCCAAT
GAGACGACGCCGTTCGAAACCAC-----------------------------------TTACGCATAGACCAGGTCTGTG
TAGACTAAT-TCCCTGACCTGTGGGCT-----------------------------------------------CTTTCA
TCGGCGGCTGCCACCCGCCCACCCCCCGC------C------CCCCATACCT----CAGCTATGTGCACCGATCCCACGT
GAACCGAGAGCCCGAGAGGAATCTTTTACCATTGGAAATCCTTCTGCTCTGCTCT----CTCTCTCTCGTCACTTCA---
-CCGCATCCCCACCATGTCGCTCCGGCGCCTCCTGGGCCTCCCCGCCGCCGTCTCCGGCCGCCTAAGCCGCTCCCTATCC
ACCTCCACGGCTGCCTCCTCCCGTCCTCCCTGGATCTTGGTCGACCAGGCGACAACGGCCATCGGGTCGGCAGTACTCGG
CGCGTCCGTGCGCATCGTCGAGCCCCCGCGCTTTTCCGCCCTCACCGTGCCGGCGCTCCTGGTCGACACCAGCGCCGGCC
CCGA-CCCCGACAGCGACGTCACGCAACTCCTCGTCGGCCGCGTGTGCTCCACCAGCGCCGACGGCCTCCTCCTCATCAC
CGTCTACGATGTCCGCGCCACGGCTCCCATCCTCGCCACGCAGGGTGCCAATCATGTGCGCCGGGCCACCGGCCTCGACC
CCGAGCACGACCCAGCCACCACGCGCTTCCTCTGCAACCCTGTCACCGGCCAACTGACCCGCCTCCCGGTCA-------T
CGACGTCGTCCCGAAGAAGCTCTTGTGCGGCCCTCACATGGGCGTCCTCACCCAAGCCGGTCGCGGGCAGGGG-------
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>chr1A_684
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-----------------------------TTTTTGGCGGGAAAACGATGACGTATGCCCATCACAGGCCGCGCAGCCAAT
GGGACGATGCAGTTCGAAAGCAA-----------------------------------CTATACATAGACAAGGTTCATG
TAGACCTAA-TCGCTGAGCTGCGGGCCCCGAATGAGCTGT-AACTGGAGTACGCAGTGGAACAACCCCACGCAGCTTTCA
TCGGCGGCTGCCACCAC-----------C------C------CCCGATACCT----CAGCTGTGTGCACCGAGCCCACGT
GAACCGAGAGCCCGAGAAGCATCTTTTACCATCGGAAATCCTTCTGCTCTCC-------CTC------GTCACCTCACCG
GCCGCATCACCACCATGTCGCTCCGGCGCCTCTTGGGCCTTTCCGCCGCCGTGTCCGGCCGCCTAAGCCGCTCCTTCTCC
ACCTCCACGGCCGCCTCCTCCCGCCCTCCCTGGATCTTGGTCGACCAGCTGTCAGTGGCCACCGGGTCGGCAGCACCGGG
CGCGTCCATGCGCATCGTCGAGCCCCCGCGCTTCTCCAGCATCACCGTCCCGGCGCTCCAGGTCGACACCAGCGCCGGCC
CCGA-CCCCGACAGCGACGTCGCGCAACTCCTCGTCGGCCGCGTGTGCTCCGCCAGCGCCGACGGCCTCCTCCTTATCGT
CATCTACGATCTCCGCGCCACGGCTCCCATCCTCGCCAAGCAGGGCGCCAATCATGTCCGCCAGCTGACCGGCCTCGTCC
GCGGGCACACCCCGGACACCACGCGCTTCCTCTACAACCCTCTCACCGGCCAACTGACCCGCCTCCCGGCCA-------T
CGACGTCGGCCCGTGGCGGCTCGTGTGCGGCCCTCACATGGGCGTCCTCACCCAAGCCGGTCGCGGGCACGGAGACGGAC
CTCCCGACAGGGTCGCCGTCGCCGAGCTGCAGGGGAACAGGATGCTCCGCTTTCTCTCGGACACGGGCGAGTGGGACG--
------TCGCGGTCACCACGCCGTGCCAACTCCCGGGCGTCCGGCGGTTTCACTCGGAGACGGGCAGGAGGTTCGACCAA
GAGGCGTTCGCCTTCGGCGACCGGCTGTGGTGGGCTGACCTGAGCTGGGGCGCCATCTCGGCCGACCCGTTCAGCGGCCG
GCCGGAGCCCCGCTTCGTGGAGCTGCCGAGGGGCAGCGTGATGCCCGCACGCCCAGGGCCGGCGCCAGGGTGGCTTGACC
TGGAGGGTTTTGAGGCCCTGTCCAAAGACGCGCCGGCAGTGGGCAGGTACCGGCGCGTGGGGGTCAGCGAG---------
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>chr1D_774
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-------------------------------------------------------------TGCATCGACCAGGTCCATG
TAGACCAAC-TCGCTGACCTGTGGGCTCTGAAGGAGCTGT-AACTGGAGTACACAGTGGAACAACTGCACGCAGCTTCCA
TCGGCGGCTGCCACCAC-----------CCACTAAC------CCCCATATCT----TAGCTGTGTGCACCAAGTCCACAT
GAACCGAGAG--------GCCTCTTTTACCATCGGAAATCCTTCC-CTCTCC-------CTC------GTCACCTCACCG
GCCGCATCACCACGATGTCGCTCCGGCGCCTCCTAGGCCTTTCCGCCGCCGTGTCCGGGCGCCTAAGTCGCTCCCTCTCC
ACCTCCACGGCCGCCTCCTCCCGCCCTCCCTGGATCTTGGTCGACCAGGTGGCAGCAGCCACCGGGTCGGCAGCACCGGG
CGCGTCCGTGCGCATCGTCGAGCCCCCGTGCCTCTCCGACCTCACCGTCCCGGCCTTCCTGGTCGACACCAGCGCCGGTC
CCGA-CTCCGACAGCGACGTCATGCAACTCCTCTCCGGCAGCGTGTGCTCCGCCAGCGCCG-CGGCCTCCTCCTCATCAC
CGTCTACGACCTCCGCGCCACGGGTCCCATCCTCGCCAAGCAGGGCGCCAATCATGTCCGCCGGCTGACCGGCCTCGACC
CCGGGCACGACCCAGACAC-ACTCGCTTCCTGTGCAACCCCCTCACCGGCCAACTGACCCGCCTCCCGGCCA-------T
CAACACCGGCGCAAAGAAGCTCCTGTGCGGCCCTCACATGGGCGTCCTCATCCAAGCCGGTCGCGGGCA-----------
-------CAGGATCGCCGTCGCCGAGCTGCAGGGGAACAAAATGCTCCGCTTTCTCTCGGACACGGGCAAGTGGGACA--
------TCGCGGTCACCGCGCCGCGCCAACTCCCGCTCGCCCGGCGGTTTTACTCCGATTCGGGCATGTA---TGACCAA
GAGGCGTTTGCCTTCGGCGGCCGGCTGTGGTGGGCCGACCTCAGCTGGGGCGCCATCTCGGCCGGCCCGTTCAGCGACCG
ACCGGAGCCCCGTTTCGTGGAGCTGTCGAGGGGCAGCGTGATGCCTGAACGTCCGGAGCCAGCGCATGGGTGGCTTGACG
TGGAGGGCGCGGAGGCCGTGTCCAAACGCGAG------CTCGGCAGGTACCGACGCATGGGGGTCAGCGAGGGAAGGGTG
CGCTACGCCGAGGTGTGGCAGCGGGAGCCGTTCGTGCTCAGCTCCTTTGCGCTTGACGACGAGGGCGGCGGCTGGACGCT
GGAGCACCGCGTGGTGCTCAGCCGGCTCCTGGCGGAAGGAGACTACCCGTGGCTGCCCTCGCTGGAGAAGACGGCGCCAC
AAATTGGCGCTCTTGACCCGCTGAACGGCAATGTCATGTACCTGATGGTCGGCAGGCACAGCATGAGCGTGGACATGAGC
AAGGAGGAGGTGATTGGGAGCACTCTGCAGTCTGCACAACGGCGCCAGTTGGTGCATACCATGCGTGCTTCCACCATCGC
TTGAATCAAGCTGGATCTCTACCAGAGGTAATTACTAC------TACTAAGCTATCTAGGAGTACATGCTTACATAGCTT
CTTATTTTTACAAAACCTT-------TGAACGCCTTTTGAATGGGTGCATTGCATGT-----------------------
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----------------------------------------------------GAGTTCTTTTCTCTGTGATCTTATTTCA
ATGAAT----CTGTCTGGA----AGTGTTCCAAGAGTAGGATTTGTTGATCATAATGTGGGATTGTCGAGTAAAGTCGCT
CTCTATATAACTGTA-GTATATGTTTTGCTAACTACTC-----------GGATGGGAAACAGAAATTCTGAAGAGAGATT
TTTGTTGC--TTTTTTCCTTTGCAAATATGCTGTGATTGTGAATTAGTTATATGTATGGGATATTGTGATGCATTTATCT
GAA-----------------------------------------------------------------------------
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>chr1D_774
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-------------------------------------------------------------TGCATAGACCAGGCCCTGG
TAGACCAGCGTCACCGACCGGTGGG-TCTGAAAGAACTCT-AACGTGAGCACGCAGTGGAACAACCCCACGCAGCTTCCA
TCCATGGCTGCCAGCAC-----------CAG----C------CCCCATATCTCTCCCAACTGTGTGCACCGAGTCCACGT
GAACCGAGGCCCC-----------TTTACCATCGGAAT-CATCCTAC---GCTCT----CTCTCTCCCTCTC--------
------TCTCCACCATGTCGCTGCGGCGCCTCCTAGGCCTCCCCGCCGCCGTCTCCGGCCGCCTAAGCCGCTCCCTCTCC
ACCTCCACGGCCGCCTCCTCCCGCCCTCCCTGGATCCTGGTCGACCAGGCGACAACGGCCACCGAGTCGGCAGCACTCGG
CGCGTCCGTGCGCATCGTCGAGCCCCCGCGCTTCTCCGCCCTCACCGTCCCGGCGCTCCTGGTCGACACCAGCGCCGGCC
CCGA-CCCCGACAGCGACGTCATGCAACTCCTCGTCGGCCGCGTGTGCTCCGCCAGCGCCGACGGCCTCCTCCTTATCAC
CATCTACGATGCCCGCGCCACGGCTCCCATCCTCGCCACGCAGGGCGCCAATCATGTGCGCCGGGCCACCGGCCTCGACC
CCGAGCACGACCCAGACACCACGCGCTTCCTCTGCAACCCTCTCACCGGCCAACTGATCCGCCTCCCGGCCATGGACCAT
CGACGTCGTCCCGAAGAAGCTCGTGTGCGGCCCTCACATGGGCGTCCTTACCCAAGCCGGTCGCGGGCACGGGCCCGCT-
-----GACAGGCTCGCCGTCGCCGAGCTGCAGGGGAACAAGATGCTCCGCTTTCTCTCGGACACGGGCAAGTGGGACA--
------TGGCGGTCACCGCGTGGTGCCAACTCCCGCTCTGCCGGCGGTTTTACTCGGAGTCGGGCTGGATGA--------
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>SNPs
---------------------------S----------S-S--------------------------S------------
-------------------S--SS-SSSS-SSSSS-S------------------S-----------S------------
--SS-----S--------S-----S--SS---------------------------------------------------
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---------------------S---S---S--------------------S-----------------S-----------
-------S---S-S----S------S-----------------------S----------S-----S------S-S--S-
---S------S-------S-S----S-------------------S---------------S------S-----------
---S-----------------------------S---------SS-----------------S--------------S--
SSS-------S----S---------------S------------------S---S----------------------S--
-----------------------------S-----S---------S---S------------------------------
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--------------------------------------S------------------S----------------------
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---------------------------------------------------------S--------S--S----------
----------S-----------------------------------------S---------------------------
----S-------------------------------------------------------------------S-------
---SS----S----S--------S------------------S----------------------------------S--
----------------------------------------------S---------------------------------
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------------------------------------------------S-------------------------------
---------------------------------------------------------------S----------------
-------------------S-------------------------S----------------------------------
------------------------------------------------------S-------------------------
---------------------------------S----------------------------------------------
----S-----------------------------------------------------------S---------------
-------S---------------S---------------------------S-------------S--------------
------------------------S------------------S-------------S----------------S-----
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--------------------------------------S-------------------------S---------------
-------------------------------------------S------------------------------------
------------------------S---------S-----------------SS--------------------------
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------SSSS-------------S---S----------------------------------------------------
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----------------S---------------------------------------------------------------
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------
-------------SS-------S------------------S-------S-----SS---------------SS--S---
S----------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_100
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CTCAAGTGGTCGGCTGATGT------------------------------------------------------------
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>reverse_2538
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---------------------------------------------------------ATTGCCGGAGAAGACGATGC---
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>forward_1006
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--------------------------GACAGGGAAAGAGGACGGTG----------------------------------
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>reverse_4407
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------CTGTCTGTCTACTGGTGCTCC-----------------------------------------------------
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-----------------
