>input_sequence_55652
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------GTGCAAGGCCAGCAACCACTTTATTGTCTGGTATGCTC
CAAAAGCTTAGCCTCCTCCTTGATTGTTTTTCCGCTTTCTGTTCACTTTTCACTGTGCTGGTTTAGCCAAATATCTTCAT
AATATCTACTGACTGTTCATCAACAGTTGGTTAGCTTCAGTAATTAGAAGTCCTAAGATGTA-------CCAGTAGAG-T
TTCTTAACTAATTTCAGAAGTTTTGTGTGTGAGTTGCTCGACCACTTTCCGTCCGATCGATGCATGATTCCTCGATCTAA
TTGAAGTTCATTTTGGTGTAGCGTAG-----CACGTATAAGAAGAGGAATTAAGCCCCAAGAGTTGGAGGCGATGTCGTG
GTGGAAGTCCAAGTCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCGACGGCGCGTACCGCGGAGGTAAGGAACGCT
CGCCGTCACGTCGCAAGAAGTCCGACGAAGACGAGGAGGAGTACCGCCCCTACGCAGGCTACGGCGCCAACACCAACCGC
GGCGGGGCCAACGAA---------------------------------------GGCGGGGGCGGCGGCTACAACAACGG
CTACGGCGGCGGTG------GCTCGTACAGCAACGGCAACAGCGGTATCACGCCCTACAA---CGGCGGCGGTGGCTACA
ACAGCAACTCTTCCTACGGCAACGGCGGCGGTGGCTACAACAACAACTCTTCCTACGGCAACGGCAACGGCGGCGACGGG
TACAACAACGCTCCCAGCTGGGCATCCCAGGACACCGGCGGCCGGACGCCGATGTACATAAACACCAGAGAGGTCCACGT
CTATGGGGCGCCGCAGAACGACGACGACTACAACGGCGACCAGAAGAGGC---GTGGCGGCGGCGGCGGGGGCAGCGGGT
TCTTCGGTCCGGCCTTCCATGCCGTCGGCCATTTCGTCGATCGCAGGTTCGGCCTCGACGATAGGAACTGATCGATCACG
CCCATATATATGGCTGATTGCGCTGGCCATGCAGATATGCATGGATGCTCGCGACGATCGACTACTACACTACTACTACT
ACTACTACTACTACGTGCTGTGA--TGTGTCTTGGATAGTTTCCAAGTGTACCAG---TGATGTGCTTCAGTTCTGCGCA
GTGATGTC--TGTGTGGTTTGTGTTGCATCGTGTACAACATGATTTTATCATGCAGATGTTGTATATGTATATATGTACG
CAACTTAATTACTTCTTGTTCTCTCTCAG----AAAAAAACTTGGTTACTTCTTGCATGCACATACTCC-----ATGGCA
ACTTATGATTTTCCTGTAATGATGTGGTCCTCTTTTTTTATC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr3A_1_TraesCS3A01G421100
ACCTTCAAACTGGGATCCAGCGGCTGGAGTTAATCCTGTTCTT-CCAGCCAAACCCTAAATCCTAACCACCTCCAGCAGT
GAGCTCCCTGACTCTCCTCCGGCTGCAATGCCATGACGAGCCGTTTCGTCCCTGGCGAGGTCCTGGAGCGCCCTCATAGT
CGCGTCGTCTCCG------TCTCCGTTGAGTTCTTGACTTGCCTCATCAAGGACGTTGCAGCAAGC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGTGTCGCTCCCGTATCGGCTGAAAATCAATGGGGGAGAAAGATTAGTTAGTTGAAGACCCTGT
AAATCGTCCGTAACAGGTCCGTGTGTCTAGAATTATCATG----------------------------------------
--------------------------------------------------------------------------------
--TTTTTTTAGCCAGGGAGCACGAAAGAGGTACTCCACTACTTCTGGTTCTAGACCACGACAGTGGAGTATTCTTTTACT
GCTGGAGTAGTATAATTTACTTGATTAGTTAGATATTTAACAGGCCGGCAGGTAATGGCCAGGCTAATGGGATAAGGATG
AGTGTAAGGAGTAGTGGTCAGTGACCATAGATAGCTTGCAACTTGCAAGGCGCAGTACTTACCACATAGTGATAGTGACA
TACACCACCCATGCTGCCACACATACCGGTCCATAATACACCACAATGCTTCCTCAAGAAAAAAAATACACCACATACGG
CGAAGATCTATCGCCCTGCCCACTTTGAATTAAAAGGAATTTATGAATTAACTACAATGTGTGAAGCTTCGGGTATGGTT
CCCACATGTATGCAAGTCTCCTAAGTAGCTCCTTCCACTTGGCAACTAGTGCTGATGATGCTCTTTAATTTAGCTGCATA
CGTACCCTTCAGGACGTCATTAACCCACATGCACGCAGTTACAAGGGAAAATGGGGTTAGGTTCTCTGAGGAAGTAATCA
AAAGAGCACTTTTTTTATTGCACAAACGATGACCTTTGTTGGATAGACACGGTTGGCTTGAACGGTTGTGCCACTATATA
AACGGTGCCTGCAGGCTCAAGGCTACAT---AGGCTTGAGAAGTGCAAGGCCAGCAACCACTTTATTGTCTGGTATGCTC
CAAAAGCTTAGCCTCCTCCTTGATTGTTTTTCCGCTTTCTGTTCACTTTTCACTGTGCTGGTTTAGCCAAATATCTTCAT
AATATCTACTGACTGTTCATCAACAGTTGGTTAGCTTCAGTAATTAGAAGTCCTAAGATGTA-------CCAGTAGAG-T
TTCTTAACTAATTTCAGAAGTTTTGTGTGTGAGTTGCTCGACCACTTTCCGTCCGATCGATGCATGATTCCTCGATCTAA
TTGAAGTTCATTTTGGTGTAGCGTAG-----CACGTATAAGAAGAGGAATTAAGCCCCAAGAGTTGGAGGCGATGTCGTG
GTGGAAGTCCAAGTCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCGACGGCGCGTACCGCGGAGGTAAGGAACGCT
CGCCGTCACGTCGCAAGAAGTCCGACGAAGACGAGGAGGAGTACCGCCCCTACGCAGGCTACGGCGCCAACACCAACCGC
GGCGGGGCCAACGAA---------------------------------------GGCGGGGGCGGCGGCTACAACAACGG
CTACGGCGGCGGTG------GCTCGTACAGCAACGGCAACAGCGGTATCACGCCCTACAA---CGGCGGCGGTGGCTACA
ACAGCAACTCTTCCTACGGCAACGGCGGCGGTGGCTACAACAACAACTCTTCCTACGGCAACGGCAACGGCGGCGACGGG
TACAACAACGCTCCCAGCTGGGCATCCCAGGACACCGGCGGCCGGACGCCGATGTACATAAACACCAGAGAGGTCCACGT
CTATGGGGCGCCGCAGAACGACGACGACTACAACGGCGACCAGAAGAGGC---GTGGCGGCGGCGGCGGGGGCAGCGGGT
TCTTCGGTCCGGCCTTCCATGCCGTCGGCCATTTCGTCGATCGCAGGTTCGGCCTCGACGATAGGAACTGATCGATCACG
CCCATATATATGGCTGATTGCGCTGGCCATGCAGATATGCATGGATGCTCGCGACGATCGACTACTACACTACTACTACT
ACTACTACTACTACGTGCTGTGA--TGTGTCTTGGATAGTTTCCAAGTGTACCAG---TGATGTGCTTCAGTTCTGCGCA
GTGATGTC--TGTGTGGTTTGTGTTGCATCGTGTACAACATGATTTTATCATGCAGATGTTGTATATGTATATATGTACG
CAACTTAATTACTTCTTGTTCTCTCTCAG----AAAAAAACTTGGTTACTTCTTGCATGCACATACTCC-----ATGGCA
ACTTATGATTTTCCTGTAATGATGTGGTCCTCTTTTTTTATCTTATGGCAATAAAAAAGTCCATCTAAGTGC-------A
CATATTAAGTGGAAAAGCAAAATTTCTTGTATAATGAATTATTTTAAGTTTGTCAGATGTAGAATTGCTCAAATTTGGAG
CACCAAAATTTCTGTATTGGGCTTTCTTCCTTGTTTCCTTTTCATTTCATTCCATTCAATTTGGTTGTCTCTTCCGGGGG
CTTATGATGAGCATATATTGCAGTTTATCATATTATTCCAATATCTTATTCTATTTCATATTGTGTACAGGAATTTATAA
CCCACCTAATTTCAGCCAAAAATCCTTTCTCAGGGTGTCATTATATTTCTTGATGTGGACTCCAATTGTTGCTTCCATGC
TGAGTGTAATTCACACATTCTTCATAAAAATCCTACTC-TTTGAGATCCAACCGCTGCCATGGATAGCTAGAGCTTA-CG
GGTGCAAGTTCGCCCACCTGTGTTTGATCGGCGGGGAGATTTTTTTTCTACCTTTAACTACATTTTATAGTTTGTCATAG
ACAACCACAATAGCCCAAAACTTATTGGAAAAATCATCAATATTAGCAAAATACTCCCCGTCAATTGCCGCAAGATATAA
ACATACGCGGTGTTTAGACATGTTACGGTCCTCAAGATGTAATTCTGATGATTGCTTTACGTATAAATATCATAGTAAGT
GCAATACAAAGAAACAC---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAGATACTTTTAATTTCACC
AAAATCTACAAGAACTCTGTATGCCTGCATAGATAGTCAAAGTTTAGAGATATTCTTGGACGCTTTCCATATGAGCTTTT
ATATACTTTGGAATGAATGTAGTACATTC-TGTACGTACGTAAAATCCCATATACATATATTTTTTATTTACCAAAGATC
CACAGAAAAATAGTCAGCCATTAACAATAATACACATAATTCCTTTAAAACCGTCTTCCACGGTTCTCCATACATAGCAT
GATAGATTTGAAGGCAAGAACATAGACGTGGATTGATCTGTTAAATTTATGCGCA
>chr3D_1
ACCTTCAAACTGGGATCCAGCGGCTGGAGTTAATCCTGTTCTTCCCAGCCAAACCCTAAACCCTAACCACCTGCAGCAGT
GAGCTTCTTGACTCTCCTCCGGCTGCAATGCCACGGCGAGCCGTTCCATCCCTGGCGAGATCCTCGAGTGCCCTCATAGT
CGCGTCGTCTCCG------TCTCCGCTGAGCTCTTGACT-GCTTCATCAAGGACGTCGCAGCAAGC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGTGTCGCTCCCGTATCGGCCTCCGCATCAATTTGCTCTCATTAGCGAAATCGACCGAACGTGC
AAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGGCTGATTAATAGCGAATACGCTTGGATAAACTTGTCAAAT
AATTTTTGATGAATCTAAAGCTCAATTTGGAAGACTTATATCATGAGGGATTTCCTCATGTAATGTGAGTAAGTTGACCC
CATTTTTCTAGCTAGAGAGCACGAAAGAGGTACTCCACTACTTCTGGTTCTAGACCACGACAGTGGAGTATTCTTT-ACT
GCTGGAGTAGTATAATTTACTTGATTAGTTAGATATTTAACAGGCCAGCAGGTAATGGCGAGGCTAATGGGATAAGGATG
AGTGTAGG----AGTGGTCAGTGACCATAGATAGGTTGCAACTTGCAAGGTGCAGTACTTACCACATAGTGATAGTGACA
TACACCACCCATGCTGCCACACATACCGGTCCATAATACACCACA------------------------------TACGG
CGAAGATCTATCGCCCTGCCCACTGTGAATTAAAAATAATGGATGAATTAACTACAACATTTGAAGCTTCGTGTATGGTT
CCTACATGTATGCAAGTCTTCTAAGTAGCTCCTTCCACTTGGCAACTAGTGTTGATGATGCTCTTTAATTTAGCTGCGTA
CGTACCCTTCAGGACGTCATTAACCCACATGCACGCAGTTACAAGGGAAAATGAGGTTAGGTTCTCTGAGGAAGTAATCA
AAAGAGCACTTCTTTTATTGCACAAACGATGACCTCTGTTGGATAGACACAGTTGGCTTGAACGGTTGTGCCACTATATA
AACGGTGCCTGCAGGCTCAAGGCTACATACCAGGCTTGAGAAGTGCAAGGCCAGCATCCACTTTATTGTCTGGTATGCTC
CAAAAGCT-AGCCTCCTCCTTGATTGTTTTTCCACTTTGTGTTCACTTTTCACTGTGCTGGTTTAGCTAAATATCTTCAT
AATATCTACCAACTGTTCATCAGCAGTTGGTTAGCTTCAGTAATTAGAAGTCCTAAGATGTAGTAAGTACCAGTAGAGTT
TTCTTAACTGATTTCAGAAGTTTTGTGTGT--GTTGCTCGACCGCTTTCCGTCCGATCGATGCATGATTCCTCGATCTAA
TTGAAGTTCATTTTGGTGTAGCATAG-----CAGGGATAAGAAGAGGAATTAAGCCCCAAGAGTTGGAGGCGATGTCGTG
GTGGAGGTCCAAGCCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCAACGACGCGTACCGCGGAGGCAAGGACCGCT
CGCCGTCGCGTCGCAAGAAGTCCGACGACGACGAGGAGGAGTACCGCCCATACGCAGGCTACGGCGCCAACACCAACCGC
GGCGGGGCCAACGAAGGCGGTGGCGGCGGCGGCGGCTACAACGGTGGTTACGGCGGCGGGGGCGGCGGCTACAACAACGG
CTACGGCGGCGGTG------GCTCGTACAGCAACGGCAACGGCGGTATCACGCCCTACAACGGCGGCGGCGGTGGCTACA
ACAGCAACTCTTCCTACGGAAACGGCGGCGGTGGGTACAACAAC---TCTTCTTACGGCAACGGCAACGGCGGCGACGGG
TACAACAACGCTCCCAGCTGGGCATCCCAGGACACCGGCGGCCGGACGCCGATGTACATAAACACCAGGGAGGTCCACGT
CTATGGGGCGCCGCAGAACGACGACGACTACAACGGCGACCAGAAGAGGCGTGGTGGCGGCGGCGGCGGGGGCAGCGGGT
TCTTCGGTCCGGCCTTCCATGCCGTCGGCCATTTCGTCGATCGTAGGTTCGGCCTCGACGACAGGAACTGATCGATCACG
CCCATATATATGGCTGATTGCGCTGGCCATGCAGATAGGCATGGATGCTGACGACGATCGAGTACTACACTACTACTA--
-------------CGTGCTGTTA--TGTGTCTTGGATAGTTTCCAAGTGTACCAGTGATGATGTCCTTCAGTTCTGCGCA
GTGATGTGTGTGTGTGGTTTGTGTTGCATCGTGTACAACATGATTTTATCACGCAGATGTTGTATATGTATATATGTACG
CAACTTAATTACTTCTTGTTCTCTCTCTCAAAAAAAAAAACTTGGTTACTTCTTGTAATTGCATGCAGATACATATGGCA
ACTTATGGTTTTGTTGTAATGATGTGGTCCTCTTTTTTTATCTTATGGCAATCAAAAAGTCTATCTAAGTACTGTATTGA
CATATTAAGTCGAAAAGCAAAATTTCTTGTATAATGAAATATTTTTA-TTTGTCAGATGTAGAA---------------G
CACCAAAATTTCTATATTGGGCTCTCTTCCTTGTTTCCTTTTCATTTCATTCCATTCAATTTGCTTGCCTCCTCCAGGGG
CTTATGATGAGCATATATTGGAGTTTATCATATCATTCCAAGATCTTATTCTATTTCATATTGTGTACCGGAATTTATAA
CCCACCTAATTTCAGCCAAAAATCCTTTCTCAGGGTGTCATT-----TCTTGATGTGGACTCCAATAGTTGCTTCCATGC
TGAGTGTAATTCACATGTCCTTCGTAAAAATCCTACTAC---GAGAACCAACCGCTGCCTTGGATGGCTAGAGCTTA-CG
GGTGCAAGTTCGCCCACCTGTGTTTGATCGGCGGGGAGGTCTCTTTTCTACCTTTAACCACATTTTATAGTTTGTCATAT
ACAACCACAATAGCCCAAAACTTATTGGAAAAATAATCAATATTAGCAAAAGACTCCCCGTCAATTGCTGCAAGATATAA
ATATACACGGTGTTTAGACATGTCACAGTCCTCAGGATGTAATTCTGATGATTGCTTTACATATAAATATCATAGTAAAT
GCAATACAAAGAAACGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAGATACTTTTAATTTCACC
AA--TCAACAAGAACACTGTATGCCTGCATAGATAGTCAAAGTTTAAAGATATTCTTGGATGCTTTCTATATGAGC-TTT
ATATACTTTGGAATGAATGTAGTACATTCATGTACGTACATAAAATCCCATATATACATATTCCTCATTTACCAAAGATC
CACAGAAAAATAGTCAGTGGTTAACAATAATACACATAATTCCTTTAATACCGTCTTCCCCGGTTCTCCATACATAGCAT
GATAGATTTGAAGGCAAAAACATGGACGTGG---GATCTGATAAATTTATGC---
>chr3B_5
----TCAAACTGGGATCCAACGGCTGGAGTTAATCTTGCCCTT-CCAGCCAAACCCTAAATCCGAATCACCTCCAGCAGT
GTGTTATCTGCCTCTCCTCCAGCTGCGATGCCAAGACGAGCCGTTTCGTCCCCGGCGAGGTCCTGGAGAGCCCTCATAGT
CATGTCGTCTCCGTCTTCGTCTCCGGTGAGCTCTTGACTTGCCTCATCAAGGACGTTGCAGCAAGCCGTGTCGCTCGAGG
AGATGTTCGCGTCGACGACGAGGCGTCTATGGTGATTTTGTAAATCTCAAGATGATATGTTGACTCAATCTCTCGAAGGT
GCTCATAGGGGTAAGGTGTGCGTGTGTGCGTTCATAGAGATGAGTGTATGCGCGTATGTATGAGCGCTTGCGTCTGTACT
GTGTTAAAAAAAAAGCCGTGTCGCTCCCGTATCATCCTCCGCATCAATTTGCTCTCGTTAGCGAAATCGACCGAACGTGC
AAAAAAAGG-------------------GAGACATATATGGCTGATTAAAAGCGAACACGCTCGGATAAACCTGTCAAAT
AGTTTTTGATGAATCTAAAGCTCACTTTCATGCATGTAA------------------ATGTAATGTGAGTAAGTTGACCC
CATTTTTCTAGCCAGAGAGCACGAAAGAGGTACTCCACTACTTCTGGTTCTAGACCACGACAGTGGAGTATTCTTTTACT
GCTGGAGTAGTGTAATTTACTTGATTAGTTAGATATTTAACAGGCCGGCAGGTAATGGCCTGGCTAATGGGATAAGGATG
ATTGTAGT----TGCGGTCACTGACCATAGATAGGTTGCAACTTGCAAGGCGCAGTACTTACCACATAGTGATAGTGACA
TACACCACCCATGCCGCCACACATACCGGTCCATAATACACCACA------------------------------TACGG
CGAAGATCTATCGCCCTGCCCACTTTGAATTAAAAAGAATTGATGAATTAACTACAACATGTGAAGCTTCGTGTATGGTT
CCTACATGTATGCAAGTCTCCTAAGTAGCTCCTTCCACTTGGCAACTAGTGCTGATGATGCTCTTTAATTTAGCTGCGTA
CGTACCCTTCAGGACGTCATTAACCCACATGCGCGCAGTTACAAGGGAAAATGAGGTTAGGTTCTCTGAGGAAGTAATCA
AAAGAGCACTTTCTTTATTGCACAAATGATGACCTCTGTTGGATAGACACAGTTGGCTTGAACGGTTGTGCCACTATATA
AACGGTGCCTGCAGGCTCAAGGCTACATACCAGGCTTGAGAAGTGCAAGGCCAACAACCACTTTATTGTCTGGTATGCTC
CAAAAGCT-AGCCTCCTCCTTGATTG-TTTTCCACTTTGTGTTCACTTTTCACTGTGCTGGTTTAGCTAAATATCTTCAT
GATATCTACTAACTGTTCATCAACAGTTAGTTAGCTTCAGTAATTAGAAGTCCTAAGATGCAGTACTAGAGTT-----TT
TTGTTAACTAATAGCACAAGTTTTATGTGT---------------TTTCCGACCGATCGATGCATGATTCCTGGGTCTAA
CTGAAGTTAATTTGGGCGTAGCATAAGCATACAGGGAAAAGAAGAGGAATTAAGCTCCAAGACTTGGAGGCGATGTCGTG
GTGGAAGTCCAAGTCGCACTTCAGCGCCGACAGCCAGGACTCGAGCTCCGACGACGCGTACCGCGGAGGCAAGGACCGCT
CGCCGTCGCGTCGCAAGAAGTCCGACGAAGACGAGGAGGAGTACCGCCCATACGCAGGCTACGGCGCCAACACCAACCGT
GGCGGGGCCAACGAAGGCGGT---------GGCGGCTACAACGGTGGTTACGGCGGCGGGGGCGGCGGCTACAACAACGG
CTACGGCGGCGGTGGCGGTGGCTCGTACAGCAACGGCAACGGCGGTATCACGCCCTACAACGGCGGCGGTGGCGGCTACA
ACAGCAACTCTTCCTACGGCAACGGCGGCGGTGGCTACAACAACAACTCCTCCTACGGCAACGG---CGGCGGCGACGGG
TACAACAACGCTCCCAGCTGGGCTTCCCAGGACCCCGCCGGCCGGACTCCGATGTACATAAACACCAGGGAGGTCCACGT
CTATGGGGCGCCACAGAACGACGACGACTACAACGGCGACCAGAAGAGGCGTG---GCGGCGGCGGCGGGGGCAGCGGGT
TCTTCGGTCCGGCCTTCCATGCGGTCGGCCATTTCGTCGATCGCAGGTTCGGCCTCGACGACAGGAACTGATCGATCACG
CCCATATATATGGCTGAATGCGCTGGTCATGCAGATATGCATGGATGCTGGCGACGATCGATCGAGTACTAC--ACTACT
ACTACTACTACTACGTGCTGTGATGTGTGTCTTGGATAGTTTCCAGGTGTACCAGTGATA---TGCTTCAGTTCTGCGCA
GTGATGTGTGTGTT--GTTTGTGTTGCATCGTGTACAACATGATTTTATCATGCAGATGTTGTATATGTATATATGTACG
CAACTTAATTACTTCTTGTTCTCTCT-----AAAAAAAACTTAGGTTACTTCTTGTAATTGCATGCAGATACACGGCAAC
TATGATTTCACT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTCCAATAGTTGTTTCCATGC
TGAGTGTAACTCATGTGTCCTTCGTAAAAATCCTACTCCTTTGAGAACCAAGCGCTGCCTTGGATGGCTACAGCTTATCG
GGTGCAAGCTCGCCCGCCCATGTTTGATCCGCGGGGAGGTCTCATTTCTACCTTTAACGACATTTTATAGTTTGTCATAG
ACAAGCAAAATATCCCAAAATTTATTGGAAAATTCATCGATATTAGCAAATGACTCCCCATCAATTGCTGCAAGATATAA
ATATACATGGTGTTTAGACATGTTACAGTCCTCAAGATGTAATTCTGATGACTGCTTTACATATAAATATCATAGTAAGT
GCAATACAAAGAAACACAACATCATTTAAATTTCAACAATCTTTTTTTGCGTAGTAATACGTGTCTCATTAATAAAATAA
AGATTCACTTACAAGCCACATAAACATCCACGTTACATGATTGAAAAGATAGGATAATCCTATGCAAAAAAAAAACAGCG
TCTGTCCCTCTCCACTAAGGAAAATGAGACATATCACCTCTTCACCAGAGCTCGACGCGGCTCCATCATTGATCAGCAGC
TTTACGGACCTCCAAAGTAGTTTGCCTGAAGCAAAACCATTGTTGTTGAAAGAATCAGATCGGGACAACGTGTCCCCGGA
CATGCCATCGAACTTCAGAACTGACACCCCCGCACGACTACGGCGTCGGAGGAGAAAACCGGAACTGTCAGCCTCCAACC
ACAGACCCAACACAAGATGCACCATCTTTCAGCTGTCACTTGCATAGACAACCGTCTGCGCGTATTCCTGGATGACAAAA
TCTCCCTGCTCCACCATGACGTCAGAGACAACGCCGCAGCAATGGGGACAGAACAGAAGGAGAGACACGCCTGATGGAGT
CGCCGCCGCCGCCTCGCCGACACCATCCATGAACCTAACGTCGCAGATCTAAAGGATCAGAACACATGATGCCATTAACT
CTAAGAGGCCACCAAGAAGGGCACCGCCGGTGTAGGAGTGGAGTTGAGGCAGATTTATTCGTCCGGGCGTCGCTCCCAAT
ACCCCAACGGCGCACCACGACCTATAAATCCAAACACTAACGACAGAGCGGAGGAACGGGGTCCCCCCCCCTCCCTCCTA
CCGCCGGAGCAGTAGCCGGAGGGAGAGGGGGCCAGCGCCCTCGCCAGTGGAGATTGGTGGAAAAAGAGATCGCCTCGCTA
GTCACCTCCTGCCGGCGGCTTGGGTAGGAAAACGTTTCGTCTCTGTTGGATGGATTTGCAAAGCTCATTTAAATTTCACC
AA--TCTACAAGAACTTTGTATGCAAGCATAGATAGTCAAAATTTAGAGACATTCTTGCATGTTTTCTATAGGATC-TTT
ATATAATTTGGAATGGATGTAGTACATTCATGTTCCTACG------------TACATATATTTCTCATTTACCAAAGATC
TACAGAAAAATAGTCAGCCATTAACAATAATACACACAATTCCTTTAATACCGTCTTCCCCGGTTCTCCATACATAGCAT
GATAGATTTGAAGGTAAAAACATAGACATGGATCTGAT-----------------
>SNPs
--------------------------------------------------------------------------------
-----S---------------------------S----------------------------------S-----------
-------------------------S----S-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------SSSSSSSSS-SSSS-SSSSS-SSSSS-SS-SSSSSS--S-S--S
---SSSSSSSS-SSSS-SSS-S-S-SSSSSS-SSSSS-------------------------------------------
--------------------------------------------------------------------------------
-------S-------S----------------------------------------------------------------
--------------------------------------------------------------------------------
------S-SSSS----------------------S---------------------------------------------
---------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-----------------------------------S-----S---------------SS------------S--------
--S--------------------------------------------------------------------------S--
-----------------------------------------------------S--------------------------
-----------------------------------S--------------S-----------------------------
--------------------------------------------------------------------------------
--------S------------------------S----S----------------------------S------------
----------S---------------------------------------------------------------------
------------------------------SS-----------S------------------------------------
----------------------S----------S-S--------------------------------------------
-----------------------------------------------------S---------------S-----S----
-------S-----------------------------------------S------------------------------
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
-------------------------------------------------S-----------S------------------
--------------------------------------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------SS--------------------------S-SSSS---S-SSS-----------
-------S----SS--------------------------------------S--------S--------S---------
----------S---------------------------S------S-S----------------SSSSSSSSSSSSSSS-
-------------S---------S---------------------------------------S---S---S---S----
--------------------S------------S-------S--------------------------S-----------
------------------------------------------SSSSS-------------------S-------------
---------------SS-S----S----------------------S------------S-----S--------------
--------------------------------------S-S-S---------------S---------------------
---------------------------------------------------S----------------S-----------
-S----S-------------------S---------------------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--SS--------------------------------------------------------S------S--------S---
---------------------------------------------------------------S-S--------------
------------------------------------------------S----------S--------------------
-----------------S---------------S------S-----------SSS
>forward_1043
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AAGCTTCGGGTATGGTT
CCC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_2868
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TCTCTTCCGGGGG
CTTATGA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
