>input_sequence_55646
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------------------------------------------------------AA-GATCATCCCTTCTCCCATC---C
TTGCCCTCCTCCATTGATCCATTCCTTCAAGCAAGAAACAAACAAACAAACAGAGCTCCACCGCCGAGAAACCTCC----
--------------ACCAATGGCGACCACCAAGAAGAGGGAGATGGTGTTCTTCGACGTGGAGGCGGCGCAGTCCCCGTC
GCCGCCCGGCGAGTGCCGCCTGCTGGAGTTCGCTGCCACCCTCGTCTGCCCGCGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGTCCCGACGACGTCGCCAACGACGGCAGTGTCCACCTCCCCTCCTCG------GCCCCCTCGTTCGAG
GACGTCTTCCCGGACATCTTCGAGCTGCTGGACGGCCGCGTGTGGGCGGGCCACGGCATCCGGCGCTCGGGCTGCCTGCG
GGTGCGCGAGGCCTTCGCCGCCTTCGGCCTGCCCGCGCCGGAGCCCGTGGGCGTCGTCGACTCGCTCGACGTGCTCCTCG
CGCAGGGCA---------GCTTCGGGCGGGCCGTCGCCGGGGACGACGGTC------AGGACGATGAGGCGGCGTCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGGGCGCGGGGGCTCCGGTGCCTGGACGGCGCCCGCGTGAGCCTCGA
GGTGCTCAAGCACTGCGCCGGCGTGCTGCTGCTCGAATCCAGCCTCCGCGGCGACGTGCCCGCCGGCGCCAGCCGCAGGA
GCACGCCCACGCCTAGCAGCAG---CAA------CAACAACAACACGTTGGAGAAGGCGTTTGCCCGCGCGTCGGCCAAG
ACGACGACGCCGGCGAAGGCGGCCACCGCTCCTACTCCTCCGT---CTCCTGCTGCTGCTTCTCCGGCGGCTGTTCAGAA
GGTGAGTACGAGCACGGGGAAGAGGGACAGCACGGGGAAGGTGGTGGTGGTGGTGAAGAAGGGAGCGACAGCGGCAACTG
TGACGACAACGACGGCTACCGGAGGTCGCCGGGTGCGGCCGCCGGCGCCGCCGTTCAGCATGATCCTCAGGCACTCGAGG
GCCGTCATCAGATGAGATGATGATGATACAACCAA-----TCATCTCATCTCACCACTGATTATTGCACAGCTTAATTGT
AGTTCTGATCCATTAATTT----------ATTCACATTTGCATTCCTTCGTTCATTTGTAAATTGTACACACCTGTAAAT
TGGCTAGGCTGTGTTCATAGTTATCCTTAACTCAGGTTTAGTTTGACAGCAATGATTGTTGTAACCATCACCATCATCAT
CATGTTGTAAAAAGACAGTCCATTTCATTTTATTTGTAAATAAA------------------------------------
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>chr1A_1_TraesCS1A01G005400
GAAGAAGAAACATCTATCCGTGTAAAGTGTAACAAAGGGAGCAGTACGTAT---GTGGAATATTCTTGTCATTGTATTTG
AATTTTCTTAGCCATCC--AAGATTAGAATAAATAATTGCTAACTAGTAGGTGTGCGCGTGCGTAGAATGGTGACCCCCA
CACGGACGCAAAGGGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGACAACACACCTAAGGC-------TAGGTAGCACCTAGCT-------------
--------------------------------------------------------TCACACCACTGCATATTGCCTGCA
CGAAAAACTCAAGGCCAGCAACAAGGCTGCTTGATCGTGGGACCATGAAAAGCAT-TTCCATAACACATTTCGTTG--TT
ACCTCTCGAGCATACGTGTAGCACACACCAAGGTTTACAATGTCTGCAACATGCAAATTGCGGGCCTTATCGACCAATTT
CAGACATATTTA------TTTATTTGGATTTTCAAAATTCTCTAAATTTAAGTCTTGCTG--------------------
-GAATTTGGCCGAATAATTCAAGGGTAAATATATTCCGGCGCCCACCGAGGAATCTACTGGAATTTCGTCAAAATTTCGG
TCGATGTCTGTTTACGTACAGTACATACGGACGGACGGACAAACAC----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AAAAGAAGAATTGGTC
CATGTGATGGGAAGAAGAAA---AGAGAAAATGAAATGGGCTCTTGCATTGGTAGTAACTTAGCAAGGTGGATAATGTTG
TTGCATGCTTGTGAAACTTGGAATCCTTTTTGAAAATCAACATGAGAGAGTAGGTTGAGATGTTGAGGTAAGTAACT---
-AACTTACTTGCATGCCCTACCTTCCTTTTTGAATTTTGAGCAAGCCGCTAGCTTTGCTTCCACTGTTGGAAGTCCCCAA
GCACAAAACTCATGCACCCTACGTCCACCCCAAGCAACCCCTCTCCTCTCC-------------------------AAGA
AATATTCTTCCTCTTCTTCTTCTTCTTCTTC---CCTCTCAGCTCGTCTCTCTAGCTTAGCATGCATGCGTGCTCCCGCC
ATTTGATCGTCAAAGCTTATATATACACGGTACACCAGGCTCCTCCGACAAGACAA-GATCATCCCTTCTCCCATC---C
TTGCCCTCCTCCATTGATCCATTCCTTCAAGCAAGAAACAAACAAACAAACAGAGCTCCACCGCCGAGAAACCTCC----
--------------ACCAATGGCGACCACCAAGAAGAGGGAGATGGTGTTCTTCGACGTGGAGGCGGCGCAGTCCCCGTC
GCCGCCCGGCGAGTGCCGCCTGCTGGAGTTCGCTGCCACCCTCGTCTGCCCGCGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGTCCCGACGACGTCGCCAACGACGGCAGTGTCCACCTCCCCTCCTCG------GCCCCCTCGTTCGAG
GACGTCTTCCCGGACATCTTCGAGCTGCTGGACGGCCGCGTGTGGGCGGGCCACGGCATCCGGCGCTCGGGCTGCCTGCG
GGTGCGCGAGGCCTTCGCCGCCTTCGGCCTGCCCGCGCCGGAGCCCGTGGGCGTCGTCGACTCGCTCGACGTGCTCCTCG
CGCAGGGCA---------GCTTCGGGCGGGCCGTCGCCGGGGACGACGGTC------AGGACGATGAGGCGGCGTCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGGGCGCGGGGGCTCCGGTGCCTGGACGGCGCCCGCGTGAGCCTCGA
GGTGCTCAAGCACTGCGCCGGCGTGCTGCTGCTCGAATCCAGCCTCCGCGGCGACGTGCCCGCCGGCGCCAGCCGCAGGA
GCACGCCCACGCCTAGCAGCAG---CAA------CAACAACAACACGTTGGAGAAGGCGTTTGCCCGCGCGTCGGCCAAG
ACGACGACGCCGGCGAAGGCGGCCACCGCTCCTACTCCTCCGT---CTCCTGCTGCTGCTTCTCCGGCGGCTGTTCAGAA
GGTGAGTACGAGCACGGGGAAGAGGGACAGCACGGGGAAGGTGGTGGTGGTGGTGAAGAAGGGAGCGACAGCGGCAACTG
TGACGACAACGACGGCTACCGGAGGTCGCCGGGTGCGGCCGCCGGCGCCGCCGTTCAGCATGATCCTCAGGCACTCGAGG
GCCGTCATCAGATGAGATGATGATGATACAACCAA-----TCATCTCATCTCACCACTGATTATTGCACAGCTTAATTGT
AGTTCTGATCCATTAATTT----------ATTCACATTTGCATTCCTTCGTTCATTTGTAAATTGTACACACCTGTAAAT
TGGCTAGGCTGTGTTCATAGTTATCCTTAACTCAGGTTTAGTTTGACAGCAATGATTGTTGTAACCATCACCATCATCAT
CATGTTGTAAAAAGACAGTCCATTTCATTTTATTTGTAAATAAATGATGCATTTCATT----------------------
---TC-ATTTGCCTCAATCTATGAATAGCAATTCATCATTCATCTCTGGGTTTCTTGTTTCTGTTCTGTCTGAGTGGTTA
GATCAGGCTATTCACATGGATTGTATCT------AGAG--TATTTTATCCCCTTTGATTCCTACCATAAGAATCGAGCCT
AGAAAAAACAA---GAAGCAAGAAC-AAGAACACG-AATTTGAGGCAATTGTTGTTGTAACCATCATCATCAAGATGTTC
TTCTCCCTCAATTGGAGCATCACCAATTTGCTAATACTGTATTATTATTGCAAGATGAGATGTAA-CCAGTTCTTGTACA
GGAGTAACAAGAATAGCAATTCATCATTCAATTATTGGTTATGTTTTGTTAGGCT-ATTCATATGGATTGTATCTCTTGA
TGATTCCTTCC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TG--GAGGTAGTTTTGTTTATTTGATGGTG
ATTCCTAGGACAA-GAAAATATTGAACAGAGACAAAACAAAAAG------CAAGAACAAGAACAAACGTCTGTCTCATCT
TTGTCCATCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------CCATCGGCATCAGATT
CATCCACACCAACTAGAATTGAGCAGCATCCCATCAACATCCAAAGGAAAGACAACAAGAATTCTTCATCTCATCTCACC
C--TTGCTTGGGACCAAACAAAACAACACTCC--------------------ATATACATATATAAAGTTTCATTTCACT
ACAC--------------ATCAGCATCAGCTTTGCAACAAACACCCT--CCAAAGGGCAACAAGAATTGATAGTCTCTTG
GCCAACAACACTTTGATTTCAAAAGGATACTAACAAGGCCAGACAAAGTACAATTCAAGGGCAACACAA-GATTGTCCAT
CTTTTGGCCCACAACACCTCATTTGCTACAATAAGAGGTTAACCAAAGCCAGACAAGGTACAATTCATGTTACAGCAGTA
TTGTGCATACAGATTGGACCAAGTTCATCTAAAAATAAGGGTCCGTGAAAATTACATCGAGCCAAGAAGTGTGCAC--AC
AAAAGCCCCACCACAGGCTGCAAACACA
>chr1B_30
-----------------------------TAACAAAGGGGGCAGCAACACATAGGTGGAATATTCTTCTTCCTGTCCTTG
AATTTTCTCAGCTGTCCTATAGATTTGAATAGATTATTGAAAACCT---GGTGTGCGCGTGCGTAGAATGGTGACCCACA
CACGGACGCAAAGAGGCTGCAGCTACATCTTTCTAGCGTGCGTGTTGTGTAACCTTCTTCTTGACGGTGGGTCAAGTCAA
GTCCCTATCCGCATGAATTAATGGGAGCTGATTAATACTATTAGGTATTACTCCCAATGTAAACAAATGTAGGACAAACG
TCTTTTTGCAGTTTATTAAACTGCAAAAACGTCTTACATTTGTGTACCTAGAGGGTAGTACATACCCAGCTTCACACCGT
TGCATTATTTTTTTTAAAAAAAATTACAGGATAAACTTCCTATCTATTCATCTTCATCACACCATTGCATATTTCGTGTA
GGAAAAATCAAAGGCC---AGCAAGGCGCGCTGCTCGAAGGATCATGAAAAAAAAATTCCATAACACATATTTTTTGTTT
ACCTTTCTGACATATGTGTAGCACACAACAAGGTTCAAAATTTTGGTAACATACGCATTTCGTACATG------------
--------------------------------------------------------------------------------
-----------------------------GAAATTCCGGCACCCACCGAAGC--------------CATCGAAATTCCAT
CTGAAGCCTGCTTACGGCAGATC--------------GAGTACATACATATA----------CTCCCTCCGTTTCTAAAT
ACAAGTCCTTTTTAGGGATTTCAATAAAGACTACATACAGATGTATATAGACACGGTTTAGAATGTAGATTCAATCATTT
TGCTCCGTATGTAGTTTGTATTGAAATATCTAAAAAGATTTGTATTTAGGAATGGAGGGCGTAGAAAAGAAGAATTGGTC
CATTTGATGGGAAGAAGAAAGGAGGAGAAAATGAAATGGGCTCTTGGTAGGTGGTGACTTGC-CAAGGTGGATAATGTTG
TTGCATGCTTGTGAAACTTGGAATCTTTGATCCACACCCATGTTTGAGAGTTGGTTGAGATGTTGGGGTAACTAACTACT
CAACTAACTTGCATGCCTTACCTTCCTTTTTGA-------GCAAGCTGCTAGCTTTGCTTCCACTGTTGGAAGTCCCCAA
GCACAAAACTCATCCAC----CGTCCACCCCAAGCAACCCCTCTCCTCTCCTCTCCCCATGGAGGAGTTCAACGAGAAGA
AATATTCTTCCTCATCTTCCTCTTCTTCTTCTTGCCTTTCAGCTCAACTCTCTGGCTTACCATGCATGCGTGCTCCCGCC
A-TTGATCGTCCAAGCTTATATATACACGGCACACCAGGCTCCTCCGACAAGACAA-GATCGTCCCTTCTCCCATC---C
CT---CTTCTCCATTGATCCATTCCCACAAGCAAGAACCAAACA--------GAGCTCGACCGCCAAGAAACCTCC----
--------------ACCAATGGCGGCCACCAAGAAGAGGGAGATGGTGTTCTTCGACGTGGAGGCGGCGC---------C
GTCGTCCGGCGAGTGCCGCCTGCTGGAGTTCGCCGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGCCCGGACAACGCTGCCGCCGACGGCAGCAG---CCTCCCCTCCTCG------ACCCCCTCGTTCGAG
GACGTCTTCCCGGACATCTTCGAGCTGCTGGACGGCCGGGTGTGGGCGGGCCACGGCATCCGGCGCGCCGGCTGCCCGCG
CGTGCGCGAGGCCTTCGCCGCCTTCGGCCTGCCCGCGCCGGAGCCCGTCGGCGTCGTCGACTCCCTCGACGTGCTCCTCG
CGCAGGGCGCGCAGGGGTGCTTCGCGCGGGCCGGCGCCGGGGACGACGGCCAGGAGGAGGACGAGGAGGCGGCGGCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGCGCGCGCGGGCTCCGGTGCCTCGACGGCGCGCGCGTGAGCCTCGA
GGTGCTCAAGCACTGCGCCGGCGTGCTGCTCCTCGAGGCCAGCCTCCGCGGCGACGTCCCCGCCGGCGCCAGGGGCAGGA
GCAAGCCGGCGGCGACTCCTGCTAAGCCCGAAGGCAACAACAACACGTTGGAGAAGGCGTTTGCCCTCGCGGCGGCCAAA
TCGACGACACCGGCGAAGGCGGCCACGGCCCCTCCTCCTCCGTCTCCTGCTGCTTCTACTTCTCCGGCGGCTGTCCAGAA
CGTGAAGACGAGCACGGGGAAGAGGGACAGCACGGGGAAGGTGGTTGTGGTAGCGAAGAAGGGAGCGACGGCGGCGACCG
TGACGACGACGACGGCTACCGGGGGTCGCCGTGTGCGGCCGCCGGCGCCACCGTTCAGCATGGTCCTCAGGCACTCAAGG
GCCGTCATCAGATGAGATGATCGATGATGATCCAA-----TCATCTCACCTCACCACTGATTATTGCACAGCTTAATTGT
AGTTCTGATCCATTGATTCGCCCAAATTCACTCATATTTGCATTCCTTCATTCATTTGTAAATTGTACA-----------
--------------TCATAGTTAACCTCGACCCAGGTTTAGTTTGACAGCAATGTTTAGTGTAACCATCATCATCATCAT
---GTTGTAAAAAGACAGTTCATCTCATTTTATTTGTAAATAAATGCAATTTGTAACAAACTGTTGTTGTACAAAAGAGG
CCCTC-ATTTGCCTCAA-CTATGAATAACAATTCATGATTCATTTCTGGGTTTCTTGTTCTTGTTCTGTCTGAGTGGTTA
GATCAGGCTATTCACATGGATTGTATCTACTTGAAGAGTTTATTTTATGCCCTTTGATTCCTACAATAAGAATTGAGCCC
AG--AAAAAAACAAGAAGCAAGAACAAAGAACACAAA-TTAGAGGCAATTGTTATTGTAACCATCATCATCAAGATGTTC
TTCTCCCTCAACTGGAGCATCACGAATTTGCTAATACTGTATTATTATTGTAAGAC-------AA-CCAGTTGTTGTACA
GGACTAACAAGAATAACAATTCATCATTCAATTATGGGTAATGTTTTATTAGGTT-ATTCAGATGGACTGT--------A
TGATTTCTTCC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TGGAGAAGTTATTTTATTTATCTGATGATG
ATTCCTAGGACAAAGAAAAGATTGAACCCAGACAAAACAAAGAGCAAGAACAAGAACAAGAACAAACGTCTGTCTCATG-
TTGTCCATCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CCATCGGCATCAGATT
CATCCACACCAACTAGAATTGAGCAGCATCCCATCAACATCCAAAGGAAAGACAACAAGAATTCTTCATCTCATCTCACT
CTTTTGGTTGGGACCAAACAAAACAAAACTCCATATACATATATATACATATATATACATATATAAAGTTTCATTTCACT
ACACCAACTTAGAGCAGCATCAGCATCAGCTTTACAATAAACAT-----CCAAAGGGCAACAAGATTGCTAAAA-TCTTG
GCCAACAACACTTTAGCTTCAACTAGATGTTAGCAAGGCCAGACAAAGTACAATTCAAGGGCAAACACATGATTGTCAAT
CTCTTGGTCAACAACACTTCATTTGCTACAACAAGAGGTTAACAAAAGCCAGACAAGGTACAATTCATGTTACAGCAGTA
TTGTGCACACAGGTTGGACCAAGTTCATCTAAA---AAGGGTCAGTGAAAATTACATCATGCCAAGAACTGTGCACACAA
AAAAGCCCCACCACAGGCCGAAAACACA
>chr1D_44
-------------------------------------------GTACGTAT---GTGGAATATTCTTCTCATTGTATTTG
GATTTTCTTAGCCATAC--TAGATTAGAATAAATAATTACTAACTAGTAGGTGTGCGCGTGGGTAGAATGGTGACCCCCA
CACGGACGCAAAGGGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACACAACACACCTATGGCTAGGTACTAGGTAGCACCTAGCT-------------
--------------------------------------------------------TCACACCACTGCATATTGCCTGCA
GGAAAAACTCAAGGCCAGCAACAAGGCTGCTTGATCGTGAGATCATGAAAAGCAT-TTCCATAACACATTTCTTTG--TT
ACCTCTCAAGCATATGTGTAGCACACACCAATGTTTCAAATGTCGGGAACATACATATTCCCGGCCAAGCTGCAAATAAT
TCCAGATTTTCTTTTCTTTTTTTTGGAAGTTTGAAAATTCTCTAAATTTCAATGAGATTTGGGCTAATTTATGCTTTGCT
TGAATTGGGCCGGATGATTCAAGGCTACAGATATTCCGGCGCCCGGCAACGAATCTACTCGAATTTCGTCGAAATTCCGG
TCGATGTCTCGTGCA------TACAGACGGACGGACGGAGTACATACATATATACACACATACTCCCTCTGTAAACTAAT
ATAAGAGCATTTAAATTACTAAAGTAGTGATCTAAATGCTCTTATATTAGTTTAC-------------------------
-----------------------------------------------------GGAGGGAGTAGAAAAGAAGAACTGGTC
CATTTGATGGGAAGAAGAAAGGAAGAGAAAATGAAATGGGCTCTTGGTAG----TGACTTGC-CAAGGTGGATAATGTTG
TTGCATGCTTGTGAAACTTGGAATCTTGCACCCCCATCAACATGAGAGAGTTGGTTGAGATGTTGAGGTAACTAACTACT
CAACTAACTTGCATGCCCTACCTTCCTTTTTGA-------GCAAGCTGCTAGCTTTGCTTCCACTGTTGGAAGTCCCCAA
ACATAAAACTCATGCAC----CGTCCACCCCAAGCAACCCCTCTCCCCTCTCCTCTCCATGGAGGAGTTCAACCAGAAGA
AATATTCC---------TCATCTTCTTCTCCCTCCCTCTCAGCTAACCTCTCTA-----------------GCTCCCGCC
A-TTGATCGTCAAAGCTTATATATACCG-------CAGGCTCCTCCGACAAGACAA-GATCGTCCCTTCTCCCATCCCTC
CT---CTCCTCCATTGATCCATTCCCACAAGCAAGAAACAAACA--------GAGCTCCACCGCCAAGAAACCTCC----
--------------ACCAATGGCGAACACCAAGAAGAGGGAGATGGTGTTCTTCGACGTGGAGGCGGCGC---------C
GCCGTCCGGCGAGTGCCGCCTGCTGGAGTTCGCCGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGCCCGGACGACGCCGGCGCCGACGGTGGCGT---CCTCTCCGCCTCCTCCGCCGCGCCCTCGTTCGAG
GACGTCTTCCCGGACATCTTCGAGCTGCTGGACGGCCGCGTGTGGGCGGGCCACGGCATCCGGCGCGCCGGCTGCCCGCG
CGTGCGCGGGGCCTTCGCCGCCTTCGGCCTGCCCGCGCCGGAGCCCGTGGGCGTCGTCGACTCCCTCGACGTGCTCCTCG
CGCAGGGCGCGCAGGGGTGCTTCGGGCCGGCCGGCGCCGGGGACGACGGCCAGG---AGGACGAGGAGGCGGCGGCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGGGCGCGGGGGCTCCGGTGCCTGGACGGCGCGCGCGTGAGCCTCGA
GGTGCTCAAGCACTGCGCCGGCGTGCTGCTGCTCGAGTCCAGCCTCCGCGGCGACGTGCCCGCCGGCGCCAGCCGCAGGA
GCAAGCCGGCGGCGACGCCCAATCCCAT------CAGCAACAACACGCTGGAGAAGGCGTTTGCCCTCGCGGCGGCCAAG
ACGACGACGCCGGCGAAGGCGGCCACGGCCCCTCCTCCTCGGT---CTCCTGCTGCTGCTTCTCCGGCGGCTGTTCAGAA
GGTGAAGACGAGCACGGGGAAGAGGGACAGCACGGGGCAGGTGG---TGGTGGTGAAGAAGGGCGCGACGGCGGCGACCG
TGACGACAACGACGGCTACCGGCGGTCGCCGGGTTCGCCCGCCGGCGCCGCCGTTCAGCATGATCCTCAGGCACTCGAGG
GCCGTCATCAGATGAGATGATCGATGATGATCCAATCATCTCATCTCATCTCACCACTGATTATTGCACAGCTTAATTGT
AGCTCTGATCCATTAATTCACCC-AATTCATTCATATTTGCATTCCTTCATTCATTTGTAAACTGTACA-----------
--------------TCATAGTTAACCTTGACTCAGGTTTAGTTTGACAGCAATGTTTAGTGTAACCATCAGCATCATCAT
---GTTGTAAAAACACAGCCCATTTCATTTTATTTGTGAATAAATGCAATTTGTAACCAA---TTGTTGTACAGATGGGG
CCCTCAATTTGCCTCAA-CTATGAATAACAATTCATCATTCATTTCAGAGTTTCTTGTTTTTGTTCTGTCTGAGTGGTTA
GATCAGGCTATTCACATGGGTTGTATCTACTTGAAGAG--TATTTTATCCCCTTTGATTCCCACCATAAGAATTGAGCCC
AG--AAAAAAA---CAAGCAAGAAC-AAGAACACAAAATTTGAGGCAGTTTTTATTGTAACCATCATCATCAAGATGTTC
TTCTCCCTCAATTGGAGCATCACCAATTTGCTAATGCTGTATTATTATTGTAAGATGAGATGTAACCCAGTTGTTGTACA
GGAGTGACAAGAATAACAAATCATCATTCAATTATGGGTTATGTTTTGTTAGGTTTATTGTTTCCT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCATGTAGAGGTTATTTTATTTATCTGATGATG
ATTCCTAGGACAAAGAAAAGATTGAACCCAGACAAAACAAAAAGCAAGAGCAAGAACAAGAACAAACGTCTGTCTCATG-
TTGTCCATCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CCATCGGCATCAGATT
CATCCACACCAACAAGAATTGAGCAC---CCCATCAACATCCAAAGGAAAGACAACAAGAATTCTTCATCTCATCTCACC
C--TTGCTTGGGGCCAAACAAAACTACACTCCACACACGTATG--------------------TAAAGTTTCATTTCACT
ACAC--------------ATCAGCATCAGCTTTGCAACAAACATCCTCCCCAAAGGGCAACAAGAATTGATAGTCTCTTG
GCCAACAACACTTTGATTTCAAAAAGATGCTAGCAAGGCCAGACAAAGTACAATTCAAGGGCAACACAA-GATTGTCAAT
CTCTTGGCCAACAACACCTCATTTGCTACAGTAAGAGGTTAACCAAAGCCAGACAAGGTACAATTCATGTTACAGCAGTA
TCGTGCACACAGGTTGGGCCAAGTTCATCTAAA---AAGGGTCAGTGAAAATTACATCATGCCAAGAAGTGTGCA--CAC
AAAAGCCCCACCACAGGCTGCAAACACA
>chr4A_982
--------------------------------------------------------------------------------
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-----------------------------------CAGGCTCCTCCGACAAGACAGGGATCATCCATTCTCCCATC---C
CT---CCTCTCC-----TTCATTCCTTCAAGCAAGAAACAAACAAACAGA----GCTCCATCGCCAAGAAACCACCACCG
AGTTGCTTGCCGGAACCAATGGCGACCACCAAGAAGAGGGAGATGGTGTTCTTCAACGTGGAGGCTGCGCAGTCCCCGTC
GCTGCCCGGTGAGTGCAGCCTGCTGGAGTTCGCCGCCATCCTCGTCTGCCCACGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGCCCGGACGACGCCGACGCCGACGGTGGCGT---CCTCTCCGCCTCCTCCGGCGCACCCTTGTTCGAG
GACGTCTTCCCGGACATCTTCGAGCTGCTGGACGGCTGCGTGTGGGCGGGCCACGGCATCCTGCGCGCCGGCTGCCCGCG
CATGCGCGAGGCCTTCGCCGCCTTCGGCCTGGGCGCGCCGGAGCCCGTGGGCGTCGTCGACTTGCTCGACGTGCTCCTCG
CGCAGGGCGCGCAGGGGTGCTTCGGGCCGGCCGCCGCCGGGGACGACAACCAGGAGGAGGACGAGGAG------GCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGGATGCGGGGGCTCCGGTGCCTGGACGGCGCGCGCGTGAGCCTCGA
GGTGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr2A_982
--------------------------------------------------------------------------------
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-----------------------------------CAGGCTCCTCCGACAAGACAGGGATCATCCATTCTCCCATC---C
CT---TCTCTCC-----TCCATTCCTTCAAGCAAGAAACAAACAAACAAA----GCTCCATCGCCAAGAAACCACCACCG
AGTTGCTTGCCGCAACCAATGGCGACCACCAAGAAGAGGGAGATGGTGTTCTTCGACGTGGAGGCTACGCAGTCCCTGTC
GCTGCCCGGCGAGTGCAGCCTGCTGGAGTTCGCCGCCATCCTCGTCTGCCCGCGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGCCCGGACGACGCCAGCGCCGACGGTGGCGT---CCTCTCCGCCTCCTCCGGTGCACCCTCGTTCGAG
GACGTCTTCCCGGACATCTTCGAGCTGCTGGACGGCCGCGTGTGGGCGGGCCACGGCATCCGGCGCGCCGGCTACCCGCG
CATGCGCGAGGCCTTCGCCGCCTTCGGCCTTGGCGCGCCGGAGCCCGTGGGCGTCGTCGACTCGCTCGACGTGCTCCTCG
CGCAGGGCGCGCAGGGGTGCTTCGGGCCGGCTGCCGCCGGGGACGACGGCCAGGTGGAGGACGAGGAGGCGGCAGCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGGGCGCGGGGGCTCCGGTGCCTGGACGGCGCGCGCGTGAGTCTTGA
GGTACT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr6A_982
--------------------------------------------------------------------------------
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-----------------------------------CAGGCTCCTCCGACAAGACAGGGATCATCCATTCTCCCGTC---C
CT---CCTCTCC-----TCCATTCCTTCAAGCAAGAAACAAACAAACAAA----GCTCCATCGCCAAGAAACCACCACCG
AGTTGCTTGTCGGAACCAATGGCGACCACCAAGAAGAGGGAGATGGTGTTCTTCGACGTGGAGGCTGCGCAGTCCCTGTC
GCTGCCTAGCTAGTGCAGCCAGCTGGAGTTCGCCGCCATCCTCGTCTGCTCGCGCCGCCTCGTCGAGGTCTCCAGCTACT
CCACCCTCATCCGCCCGGATGACGCCGGCGCCGACGGTGGCAT---CCTCTCCGCCTCCTCCGGCGCACCCTCGTTCGAG
GATGTCTTCCCAGACATCTTCGAGCTGCTGGACGGCCGCGTGTGGGCGGGCCACGTCATCCGGCACGCCGGCTGCCCGCG
CATGCGCGAGGCCTTCGCCGCCTTCGGCCTGGGCGCGCCGGAGCCCGTGGGCGTCGTCGACTCGCTCGACGTGCTCCTCG
CGCAGGGCGAGCAGGGGTGCTTCGGGCCGGCCGCCGCCGGGGATGACGGCCAGGAGGAGGATGAGGAGGAGGCGGCGGCG
GCCCTGGCGGAGCACTTCGGGATCGGCGCGCGGCGGGCGCGGGGGCCCCGGTGCCTGGACGGCGCGCGCGTGAGCCTCGA
GGTGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr3B_2321
--------------------------------------------------------------------------------
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------------------------------ATTCATCATTCATTTCAGAGCTTCTTGTTCTTGTTCTGACAGTGTGGTTA
GATCAGGCTATTCACATGGATTGTATCTACTTGAAGAGTTTATTTTATCCCCTTTGGTTCCTACAACAAGAATTGAGCCC
AGAAAAAACAA---GATGCAAGAAC-AAGAACACAAA-TTAGAGGTAATTGTTATTGCAACCATCATCATCAAGAAGTTC
TTCTCCCTCAACTGGAGCATCACCAATTTGCTAATACTGTATTATTATTGTAGGATGAGATGTAA-CCAGTTGTTGTACA
GGAGTGACAAGAATAACAATTCATCATTCAATTATGGGCTATGTTTTGTTAGGTTTATTTACATGGATTGTGTATCCCTT
GAATTTACGGCTTCTTAGGTGGTTGAAAGTGCAAGACAATGGCCTGTTGTTCAAACACTACACAAGCTAGATCATCTTGC
CTGAGACTTTTCTGTTGTATAAGGTAGAATGAGTAGTTGATGACTTGGTTAGTATTTCTGTTGTCCATGAGTGCAAGCCA
TTTATAAGGGAAAAACAATAGTTCAGTATTTATTCCATCTGCAATTGTAAAGTACTGCTAATTGTAATTAATTGTCCATG
ATTCAAATGCTAA-GAGTGCATTATTCAAGAGCTATTAGAGAGAACAAAAGGGCGAGAGTGTTCGTCTTCAAGAGCTATT
AGATTTTTGAGAGCTATTAAGCCCTCATTTTGTTTGCATAATACAAACATATTTTAGCCCAACATTTGTAGGTCCACAAT
TCTTCCTACAAAATATGCATATAGATTTTTGTGGTGAATTTGCGAAACCTGTAGTCGTGGATGCTGAATGTTTAAAAACA
CCCAGATGCATATGCGTCGGGTACAGAAAGTGCACACTTGTTCGTCTAGTTTCCTATATCTGGCAACCCTAAATATATAT
CACCGTAGATCCTCACATTATAGGTGTACGAAAAGTTGGCTGCATTGTCTTTGCCCTGCAACATTTTCTATGTCTGTCTA
TATGTATGTCCACACTTCAACATCACTCAACAAAAACTCAGGGCTTGGCGAGGCAGCGCGACGTCCATCAGCATCAGATT
CATCCACACCAACTAGAATTGAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------S---------------------------S------------
-------------------S------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S------------S---------------------------------------
--------------------------------------------------------------------------------
S-----------------------------------------S-----------------------------S-------
-------S------S----------------------S------S-S-----S--S---S-------SSSS-SSS-SSS-
SSS-S--S--SS---------S--S-S-S---S----------------S-S-SSSSS-S--------------------
------S-----S--S--------S--S-S-------------------S---------S----------S-----S---
----------S-----SSSSS----S-------------SS-SSSS----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S------------------------------------------SSSS-SSSSS-SS-SSS-----------------
-------------------------S--SS-SS-S----------------S-------------------S--------
-----S---------------------------SSSSSSS------S---------------------------------
-----------------SSSS-----------------------------------------------------------
-------------S-----S-------------------------SS------------S--------------------
-S----------------------------S-------------------------------------------------
S-SSS---------------------------------------------SS-------------S--------------
--------------------------------------------------------------------------------
---------------------------------S----S-----------------------------------------
-------------S--S-------S----SS---------S--SSS----------------------------------
------------------------------------------------------------------S-S-------S---
S-------------------------------------------------------------------------------
--------S------------------------S---------------S--------------S---------S-----
-----------------------------------------------------------------S--------------
------------------------------------S-------------------------------------------
---S---SS--S-S-SSSS--S-----S--------------------------------------S----S--------
--------------------------S--S---S----------------------------------------------
-----SS--------------------------------------S-----------------------S-----S--S-
----------------------S---------------------------------------------------------
---------------------SSSSSSSS-S-------------------------------------------------
------------------S---------------S--------------S-------------------SSSSSSSSSSS
SSSSSSSSSSSSSS---------S----S-------------------------S--SS-----------S---------
SSS-------------------------------------------SSSSS-S-S-SS----------------------
-----------------S---------S---------------S----------------S-------------------
-------------------------------------------------------------------------S-----S
----------------------------------S------------------S--------------------------
--------------------------------------------------S---------------------S-------
---------------S-------------------S-----------------S-----------------S-S--SSS-
-----S--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S----S-----------S--
-------------------S--------S-------------------------------------------------S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
------------------------S---S---S--------------------------------------------S--
--S------S----------------------------------------------------------------------
-------S----S--------------------SSS-------S--------------SS--------------------
----------------------------
>forward_840
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GTACATACGGACGGACGGAC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_2446
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GGTGGTGGTGAAGAAGGGAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>forward_2407
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CGGCTGTTCAGAA
GGTGAGT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>reverse_4323
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TTTGGCCCACAACACCTCAT----------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
