>input_sequence_55637
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---------------------------------------------------ATGACGGTGGCGGCGGCGGGCGCGGGCAG
GCGTTACGCGCTGTTGCTGGCGGTGAACGACTCGGACTACGCCAGGAAGGCGCACGGCGGGTACCGGAACGTGTTCTTCC
GCGCCCTCCGCTCCGGCGAACCCGACGAGGCGTGGGACTGCTACCGCGTAATCGACGGCGAGTTCCCAGCAGCGGAGGAT
CTGGGCCTGTACGACGGCTTCGTGGTGAGCGGCAGCCCGCACGACGCCCACGGCGACGGCGCCCCGTGCTGGGTCCGCCG
CCTCTGCCTCCTCCTCCGGACCGTCCACACCATGGGGAAGCGCGTCCTCGGCGTCTGCTTCGGCCACCAGGCCCTGTGCC
GCGCGCTGGGCGGGAGGATCGGGAGATCGCCCAGCGGCTGGGACGTCGGGGTGAAGGAGGTGACCTTCGTGGACGATCTG
GAATGGCCGTTCGAGTTCTTGCCCGTGGAGCCACCCCGGAGCGCCTCCATCATCGAGGTTCACCAAGATGAGGTATCTTT
TCCATATATATTTGTTAATTAGGTAGTAGCCCTCGGTGCTTAAACACTTAATTATTTTCTTGAAAATATCCAGCCATGCC
AATGCAGAGTTGAC----ATTTTGGCAAAATGTCACTTGCACGTGACAACTGACGGTGCTCGTCGAGCTATTTCGTAATT
AAAAGTTGTCATGCATGCATGTAGATGTTGGCCGCTGTGTCATCTAATCATATTTTTCACCAACTCGTTGGGATTTGACT
TTTGACGCGTTA----ATAAACCACGTCACTTGCAAATATAGTACCCTATGATGTTGCATATCTGCAGCTAGCCTGCTCC
AGTATGTTCGTAAGTTTAGTTATCTTTATGTGGTTGAATGTCTTAATCAATTATGGGTGCGCTTGCTTGATTGATATAGG
TGTGGGAGGTACCGCCCGGTGGTAAGGTGCTGGCCTACTCCAACAAGACGCGCGTGGAGATGTTCGCCGTCGGCGACAAC
GCCCTCGGCATCCAGGGCCACCCGGAGTACACCAACGACATCCTACTCAACCTCACCAACCGCCTCGTCAACAACAGCAC
CATCGACGGGTGCGTGGGCGAGGACGCGCGGAGGACGGCGGAGAGCGGCGAGCCGGACCGCGAGTTCTGGACGGGGCTCT
GCAAGGCCTTCCTGAGGGGCTCAGGGTGCACCGGCGGCGGCGGCGCCCCCAGGCCGCCGCCGCAGGGACCGGCGCCGGAG
CTTAGCTGCAGCCACCAGGTCGCTCACTTCCCTGCCACCGCCTCCCCCATTGGCTTGTAG--------------------
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>chr6D_1_TraesCS6D01G139000
TTCGGACGAAGGCAGGTCCATCGCCACATCTAGTGTGCACTTCACTGGCTGCATCGTGCGGTCATGTTCACCATGCTTCC
TTGCGTTTTCGTTCCGATCACATAGCCCAAGCCCCACATAAAATGACACAAACCTTTCAAAAAATGACACAGACTTGGTC
CTCCTTCTGCTCGCTACCGTCAATCATGTCCATCGCCCAAGAAGTCGTCGATCGGGTGTAGGCGTGGACCCTTGACTGAT
GTTGCTTGAGTGATTCCCGCGGGGAGCTGCCAAAGCTACAGAGTCCCACCGAGCTATATGCCTCGTGTTTTGCCATTTCC
GTGTCGATCACACGCGCCGGCCTCGCGCGCGACGTCGACGTGATTACGCACCCATAGTTACCACTAGCACTAAACTAATG
---GCCAGTGGTCACTTTGCTACTACCTCCGTTCTAATTTATTGATCTTCTTCGTATTTAATGTC---AAATTGTAATCA
TGAATTTAACTAACAAAATAATAATGCATGTCACCAAAAATTATATCATTGAAAACTATGTTTAAATAGATTCAACGATA
TTATTTTTATTGACATGCATTAACATTTTATTCGTTAAATTTATGATTAAAATTTGACACAAATTATAAAGAGAA-CTAA
TAAACCAGGATGAAGGTAGTAGCTACTATGATGGGTTTTCGAGTCGATTCGCTAGCTCG-ACCGTTGCCCATCTCGATCG
ACGGCGAGCATCTGTCTGACAATATTCAATAACGAGGCATCGCCACCACGTTTTCCATAAGCGATCGCGACGCCAACCCA
ATTCCACGTTCGTGGCTCAGCCACACCGTGTCTTCCGCCTCCATAAATAGCACCGCAAGATTTAGATAGCTCGCACCGCA
ACAGAGCACACTGGTAGAGTGGCAGTGGCAGGTATACCTACACTTGTAGCCTCGGTTATCTTG---CCAGTGCCAGCTGA
GCTAGCTATATAGCTCCGTCGCTTGCTTCCGAGTTCCGACAGCTCGCTCCGATGACGGTGGCGGCGGCGGGCGCGGGCAG
GCGTTACGCGCTGTTGCTGGCGGTGAACGACTCGGACTACGCCAGGAAGGCGCACGGCGGGTACCGGAACGTGTTCTTCC
GCGCCCTCCGCTCCGGCGAACCCGACGAGGCGTGGGACTGCTACCGCGTAATCGACGGCGAGTTCCCAGCAGCGGAGGAT
CTGGGCCTGTACGACGGCTTCGTGGTGAGCGGCAGCCCGCACGACGCCCACGGCGACGGCGCCCCGTGCTGGGTCCGCCG
CCTCTGCCTCCTCCTCCGGACCGTCCACACCATGGGGAAGCGCGTCCTCGGCGTCTGCTTCGGCCACCAGGCCCTGTGCC
GCGCGCTGGGCGGGAGGATCGGGAGATCGCCCAGCGGCTGGGACGTCGGGGTGAAGGAGGTGACCTTCGTGGACGATCTG
GAATGGCCGTTCGAGTTCTTGCCCGTGGAGCCACCCCGGAGCGCCTCCATCATCGAGGTTCACCAAGATGAGGTATCTTT
TCCATATATATTTGTTAATTAGGTAGTAGCCCTCGGTGCTTAAACACTTAATTATTTTCTTGAAAATATCCAGCCATGCC
AATGCAGAGTTGAC----ATTTTGGCAAAATGTCACTTGCACGTGACAACTGACGGTGCTCGTCGAGCTATTTCGTAATT
AAAAGTTGTCATGCATGCATGTAGATGTTGGCCGCTGTGTCATCTAATCATATTTTTCACCAACTCGTTGGGATTTGACT
TTTGACGCGTTA----ATAAACCACGTCACTTGCAAATATAGTACCCTATGATGTTGCATATCTGCAGCTAGCCTGCTCC
AGTATGTTCGTAAGTTTAGTTATCTTTATGTGGTTGAATGTCTTAATCAATTATGGGTGCGCTTGCTTGATTGATATAGG
TGTGGGAGGTACCGCCCGGTGGTAAGGTGCTGGCCTACTCCAACAAGACGCGCGTGGAGATGTTCGCCGTCGGCGACAAC
GCCCTCGGCATCCAGGGCCACCCGGAGTACACCAACGACATCCTACTCAACCTCACCAACCGCCTCGTCAACAACAGCAC
CATCGACGGGTGCGTGGGCGAGGACGCGCGGAGGACGGCGGAGAGCGGCGAGCCGGACCGCGAGTTCTGGACGGGGCTCT
GCAAGGCCTTCCTGAGGGGCTCAGGGTGCACCGGCGGCGGCGGCGCCCCCAGGCCGCCGCCGCAGGGACCGGCGCCGGAG
CTTAGCTGCAGCCACCAGGTCGCTCACTTCCCTGCCACCGCCTCCCCCATTGGCTTGTAGCGCTTTGCAATTGCACGGAC
CGGCTGTTGTTGGTTCGGCGCATGCATGTGCTCGCTAGCTGCAGTAGTATAATGGTACGGCTGCATGCATGCACGTACGA
TCGGTGAAGCGTTTGTGTCAGCAACTATACGAGTGGCTGATTTTTTT-CGCATGTGCTGCGTTGCACACAGCATGTCTTG
TAGTTGTATGGTTGGATAACGGACATAAGGTCTGACGAATGCCAATTATCCACGGGATATATGTGTGTATTTGAGTTGGT
TTTGAGAAGTGGCAAAATACTTGCCACAATTAAGAAGAGAGTTTCACAGACCGAAGGCGAGAACAAAACAATACAAAAGC
CATCCTAAAAAACCAATACAAAAGCCTACTCTCCCGTGAACAAACCTGTGGTTTTGATGATTAGAGGGACAGTGTTATCC
CCGATACATCAAAGTTCAAGTCCTGGTGCTCGTATTATTCCTGAATCTATGTCAAAATTTCCGGCGATGTGATAATATGA
CGGCTCGGTCTCTCAAATGTGCCCATAGGGGTAGGATGTGTGTGTGCATCATAGGATAAGTGAGTGAGTGTATGTGCCTA
TATATGAGCGCTTAAGTATGTACTGTGTTAAAAAAAAAGCCTACTCTCCCAACATATAGTTACCCAAATGTTTAGCCCTT
GCCCTGCCTCGTTTCGTATACGGGCCAAGATGATGGTGGGTGATGACGATTTGTCTATGAACACTAGCGAGTTTCTCTTC
TACCAAATCTACCACGAAACGAGCATGGTGAGAGGGTGCGCCTATCCTGCCCATGGTGCAGTAAATGATCCCAAAAAGAT
TTGACGTCACTCAAGTTGCTCCACGCTAACAGTTC--AAAAAAAAGGGTGCAGGCTCAAGCCAATCTGTCT-GTGCCATA
GCCTTAAGAAATAGGAGATGTATAAACTAAAGGATACTCCGCGCTTTAATGCGGGAAGCGGTTGATAAGAATTTAGGTTG
ATAATATCATAATTAATTTTTGAA
>chr6A_1
TTCGGACGAAGGCAGGTCCATCGCCACATCTACTGTGCACTTCACTGGCTGCATCGTGCGGTCATGTTCACCATGCTTTC
TTGCG-TTTCGTTCCGATCACATAGCCCAAGCCCCACATAAAATGACACAAACCTTTCAAAAAATGACACAGACTTGGTC
CTCCTTCTGCCCGCTACCGTCAATCATGTCCATCGCCCAAGAAGTCGTCGATTGGGTGTAGGCGTGGACCCTTGACTGAT
GTTGCTTGAGTGATTCCCGCGGGGAGCTGCCAAAGCTACAGAGTCCCACCGAGCTATATGCCTCGTGTTTTGCCATTTCC
GTGTCAATCACACGCGCCGGCCTCGCGCGCGACGTCGACGTGATTACGCACCCATAGTTACCACTAGCACTAAACTAATG
---GCCAGTGGGCAG---------------------ATTTATTGATCCTCTTCGTATTTAGTAATATTAAATTTTAACCA
TGAATTTAACTAACAAA-TAATAATGCTTGTCATTAAAAATTATGTCACTGGAAACCATGTTCAAATATGAATCCAACTA
TATAATTTTTGGACATGCATTAATATTTTGTTAGTTAAA-TTATGATTAAAAATTAACAGAAATTATGAAGAGAAACTAA
TAAACTAGGACAGAGGTGGTAGCCACTATGATGCGGTTTCGAGTCGATTCGCTAGCTCG-ATCGTTGCCCATCTCGATCG
ACGGCGAGCATCTGT---ACAATATTCAATAACGAGGCATCGCCACCACGTTTTCCATAAGCGATCGCGACGCGAACCCA
ATTCCACGTTCGTGGCTCAGCCACACCGTGTCTTCCGCCTCCATAAATAGCACCGCAA----------------------
-CAGAGCACACTGGCAGAGTGGCAGTGGCAGGTATACCTACACTTGTAGCCTCAGTTATCTTG---CCAGTGCCAGCTGA
GCTAGCTATATAGCTCCGTCGCTTGCTTCCGAGTTCCGACAGCTCGCTCCGATGACGGTGGCGGCGGCGGGCGCGGGCAG
GCGTTACGCGCTGTTGCTGGCGGTGAACGACTCGGACTACGCCAGGAAGGCGCACGGCGGGTACCGGAACGTGTTCTTCC
GCGCCCTCCGCTCCGGCGAACCCGACGAGGCGTGGGACTGCTACCGCGTAATCGACGGCGAGTTCCCGGCAGCAGAGGAT
CTGGGCCTGTACGACGGCTTCGTGGTGAGCGGCAGCCCGCACGATGCCCACGGCGACGGCGCCCCGTGCTGGGTCCGCCG
CCTCTGCCTCCTCCTCCGGACCGTCCACGCCATGGGGAAGCGCGTCCTCGGCGTCTGCTTCGGCCACCAGGCCCTGTGCC
GCGCGCTGGGCGGGAGGGTCGGGAGGTCGCCCAGCGGCTGGGACGTCGGGGTGAAGGAGGTGACCTTCGTGGATGATTTG
GAATGGCCCTTCGAGTTCTTGCCCGTGGAGCCACCCCGGAACGCCTCCATCATCGAGGTTCACCAAGACGAGGTATATTT
TCCGTAGTTAATTAGCTGCTA-GTAGTAGCCGTCGGCGCTTAAACGCTCAATTGTTTTCTTG-AAATATCCTGCCATACC
AATGCGCAGTTGATATATATTTTGGCAAAATGTCACTTGCACGTGACAACTGACGGTGCTCGTCGAGCTATTTCGTAATT
AAAAGTTGTCATGCATGCATGTAGCTGTAGGCCGCTGTGTCATCTAATCATATTTTTCACCAACTCGTTGGGATTTGACT
TTTGACGTGTTACTCAATAAACCATGCCACTTGCAAATATAGTACCCTATGATGTTGCATTTCTTCAGCTAGCCCGCTCC
AGTATGTTCGTAAGTTTACTTATCTTGATGAGGTTGAATGTCTTAATCAATTATGGGTGCGCTTGCTTGATTGATATAGG
TGTGGGAGGTACCGCCCGGTGGCAAGGTGCTGGCCTACTCCGACAAGACGCGCGTGGAGATGTTCGCCGTCGGCGACAAC
GCCCTCGGCATCCAGGGCCACCCGGAGTACACCAACGACATCCTGCTCAACCTCACCAACCGCCTCGTCAACAACAGCAC
CATCGACGGGTGCGTGGGCGAGGACGCGCGGAGGACGGCGGAGAGCGGCGAGCCGGACCGCGAGTTCTGGACGGGGCTCT
GCAAGGCCTTCCTGAGGGGGTCAGGGTGCACCGGCGGCGGCGGCGCCCCCAGGCCGCCGCCGCAGGGACCGGCGCCGGAG
CTTAGCTGCAGCCACCACGTCGCTCACTTCCCTGCCACCGCCTCCCCCATTGGCTTGTAGCGCTTTGCAAATGCGCGGAC
CGGCTGTTGTTAGTTCGGCGCATGCATGTGCTCGCTAGCTGCAGTAGTATAATGGTACGGCTGCATGCATGCACGTACGA
TCGGTGAAGCGTTTGTGTCAGCAACTATACGAGTGGCTGATTTTTTTTCGCATGTGCTGCGTTGCACACAGCATGTCTTG
TAGTTGTATGGTTGGATAACGGACATAAGGTCTGACGAATGCCAATTATCCACGGGATATATGTGTGTATTTGAGTTGGT
TTTGAGAAGTGGCAAAATACTTGCCACAATTAAGAAGAGAGTTTCACAGACCGAAGGCGAGAACAAAACAATACAAAAGC
CATCCTAAAAAACCAATACAAAAGCCTACTCTCCCGTGAACAAACCTGTGGTTTTGATGATTAGAGGGACAGTGTTACCC
CGGCACATCAGA--TTTAAGTCCTGGTGCTCGCATTATTCCTGAATCTATTTCAAAATTTTCGGCGATGTGATAATATGA
CGGCTCAGTCTCTCAAATGTGCTCATAGGGGTAAAATGTGTGTATGCATCATAGGATAAGTGAGTGAGTGTATGCGCCTA
TATATGAGCGCTTAAGTATGTACTGTGTTAAAAAAAAAGCCTACTCTCCCAACATATAGTTACCCAAATGTTTAGCCCTT
GCCCTGCCTCGTTTCGTATACGGGCCAAGATGATGGTGGGTGATGACGATTTGTCTATGAACACTAGCGAGTTTCTCTTC
TACCAAATCTACCACGAAACGAGCATGGTGAGAGGGTGCGCCTATCCTGCCCATGGTGCAGTAAATGATCCCAAAAAGAT
TTGACGTCACTCAAGTTGCTCCACGCTAACAGTTCAAAAAAAAAAGGGTGCAGGCTCAAGCCAATCTGTCAAGTGCCATA
GCCTTAAGAAATAGGAGATGTATAAACTAAAGGATACTCTGCGCTTTAATGCGGGAAGCGGTTGATAAAAATTTAGATTG
ATAATATCATAATTAATTTTT---
>chr6B_1
TTCGGACGAAGGCAGGTCCATCGCCACATCTAGTGTGCACTTCACTGGCTGTATCGTGCGGCCATGTTCACCATGCTTCC
TTGCG-TTTCGTTCTGATCACATAACCCAAGCCCCACATAAAATGACACAAACCTTTCAAAAAAAATGAGAGACTTGGTC
CTCCTTCAGCTCGCTACCGTCAATCATGTCCATCGCCCAAGAAGTCGTCGATCGGGTGTAGGCGTGGACCCTTGACTCAT
GTTGCTTGAGTGATTCCCCCGGTGAGCTGCCAAAGCTACAGAGTCCCGCCGAGCTATATGCCTCGTGTTTTGCCATTTCC
GTGTCAATCACACGCGCCGGCCTCGCGCGCGACGTCGACGTGATTACGCACCCATAGTTACCACTAGCACTAAACTAATG
CTGGCCAGTGGCCACTTTGT------------------------------------------------------------
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-------------------TAGCTACTATGATGCGGTTTCGAGTCGATTCGCTAGCTCAAATCGTTGCCCATCTCGATCG
ACGGCGAGCATCTGTCTGACAATATTCAATAACGAGGCATCGCCACCACGTTTTCCATAAGCGACGGCGACGCGAACCCA
ATTCCACGTTCGTGGTTCAGGCACACCGTGTCTTCCGCCTCCATAAATAGAACCGCAAGATTTAGATAGCTCGCACCGCA
ACAGAGCACACTGG--------CAGTGGCAGGTATACCTACACTTGTAGCCTCAGTTATCTTGCCACCAGTGCCAGCTGA
GCTAGCTATATAGCTCCGTCGCTTGCTTCCGAGTTCCGACAGCTCGCTCCGATGACGGTGGCAGCGGCGGGCGCGGGCAG
GCGTTACGCGCTGTTGCTGGCGGTGAACGACTCGGACTACGCCAGGAAGGCGCACGGCGGGTACCGGAACGTGTTCTTCC
GCGCCCTCCGCTCCGGCGAACCCGACGAGGCGTGGGACTGCTACCGCGTAATCGACGGCGAGTTCCCAGCAGCGGAGGAT
CTGGGCATGTACGACGGCTTCGTGGTGAGCGGCAGCCCGCACGACGCCCACGGCGACGGCGCCCCGTGCTGGGTCCGCCG
CCTCTGCCTCCTCCTCCGGACCGTCCACGCCATGGGGAAGCGCGTCCTCGGCGTCTGCTTCGGCCACCAGGCCCTGTGCC
GCGCGCTGGGCGGGAGGGTCGGGAGGTCGCCCAGCGGCTGGGACGTGGGGGTGAAGGAGGTGACCTTCGTGGACGATCTG
GAATGGCCGTTCGAGTTCTTGCCCGTGGAACCACCCCGGAGCGCCTCCATCATCGAGGTTCACCAAGATGAGGTATCTTT
TCCATATATATTTGTTAATTAGGTAGTAGCCCTCGGTGCTTAAACACTTAATTATTTTCTTGAAAAAATCCAGCCATGCC
AATGCAGAGTTGACAT---TTTTGGCAAAATGTCACTTGCACGTGACAACTGACGGTGCTCGTCGAGCTATTTCGTAATT
AAAAGTTGGCATGCATGCATGTAGATGTAGGCCGCTGTGTCATCTAATCATATTTTTCACCAACTCGTTGGGATTTGACT
TTTGACGTGTTA----ATAAACCACGTCACTTGCAAATATAGTACCCTATGATGTTGCATATCTGCAGCTAGCTCGCTCC
AGTATGTTCGTAAGTTTAGTTATCTTTATGTGGTTGAATGTCTTAATCAATTATGGGTGCGCTTGCTTGATTGATATAGG
TGTGGGAGGTACCGCCCGGTGGCAAGGTGCTGGCCTACTCCGACAAGACGCGCGTGGAGATGTTCGCCGTCGGCGACAAC
GCCCTCGGCATCCAGGGCCACCCGGAGTACACCAACGACATCCTGCTCAACCTCACCAACCGGCTCGTCAACAACAGCAC
CATCGACGGGTGCGTGGGCGAGGACGCGCGGAGGACTGCGGAGAGCGGCGAACCGGACCGCGAGTTCTGGAGTGGGCTCT
GCAAGGCCTTCCTGAAGGGATCAGGATGCGC---CGGCGGTGGCGGCCCCAGGCCGCCGCCGCAGGGACCGGCGGCGGAG
CTTAGCTGCAGCCACCACGTCGCTCACTTCCCTGCCACCGGCTCCCTCATTGGCTTGTAGCGCTTTGCAAATGCACGGAC
CGGCTGTTGTTAGTTCGGCGCATGCATGTGCTCGCTAGCTGCAGTAGTATAATGGTACGGCTGCATGCATGCACGTACGA
TCGGTGAAGCGTTTGTGTCAGCAACCAGACGAGTGGCTGATATTTTTTCGCATGTGCTGCGTTGCACATAGCATGTCTTG
TAGTTGTATGGTTGGATAACGGACATAAGGTCTGAGGAATTGCAATTATCCACAAGATATATGTATGTATTTGAGTTATT
TTTTAGAAGTGCCAAAAGACTTGTCACA----------------------------------------------------
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>SNPs
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-----S--------------------------------------------------------------------------
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-----S--------------------------------------------------------------------------
-----------S-------SSSSSSSSSSSSSSSSS-----------S------------S-SSS--------S---S--
-----------------S---------S-----SS---------S---S--S----S-----S-----SSSSSSSSSS--
-SSSS---S-S------------S-----S--S------S------------S--S---S-------S------------
-----S----SSS----S---------------S-S-------------------------S------------------
-------------------------------------------------------------------------S------
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--------------S--------------------------------------S--------------------------
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----------------------------S---------------------------------------------------
-----------------S-------S------------------------------------------------------
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----------------------------S---------------------------------------------------
-------S------------------------------------------------------------------S-----
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----------------------S------------------S--------------------------------------
--------------------------------------------S-----------------------------------
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-------------------S------------------------------------------------------------
-----------------S----------------------------------------------------S---------
-----------S--------------------------------------------------------------------
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-----------------------------------------------------------------------------S--
-S-SSSSSSSS-SS--S---------------S-----------------S---------S-------------------
------S---------------S----------SS--------S------------------------------S-----
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----------------------------------------------------------------------S---------
---------------------------------------S----------------------------S-------S---
---------------------SSS
>forward_422
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--GGCCAGTGGTCACTTTGCTA----------------------------------------------------------
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>reverse_1943
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----------------------TAAGGTGCTGGCCTACTCCA--------------------------------------
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>forward_423
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---GCCAGTGGTCACTTTGCTAC---------------------------------------------------------
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>reverse_2045
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--------------------------------------------ACTCAACCTCACCAACCGC-----------------
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>forward_1962
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----------------------TAAGGTGCTGGCCTACTCCA--------------------------------------
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>reverse_2771
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--------------------------------------------------GTCAAAATTTCCGGCGATGTGA--------
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