>input_sequence_55622
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----------------------------------------ATGGAGGTGGAACGCGTGAAGAAGCTGGCGAGGGAAGAAG
AAAAGGCCCAAAGCAGAATAATCCAGGGAATCCCGGAGGAATGTCTGGCGAAGGCCATCGGTCTGACCTCGCCAGCCGAC
GCCTGCCGCGCGGCCGCAGTGTCCACCGCGTTCCGGTCGGCGGCGGACTTGGACGCGGTGTGGACACGGTTCCTGCCGCC
GGACTGCGACGCCGTCCTGGAGCGGGCCGTCCACCTCGTGGATGCTCCCTCCAAGAAGGAGCTCTTCATGGACCTCAGCA
ACGAACACGTCGTCCTCGACGATGGCAAAATGGTCTGTCGATCAGCCCTTTACTTTTGCAGTTGCACTTAGCTTTCTGAC
GATGGATTTGGTTAAACACGCATGGGCTATCAC-----------------------------------------------
------TAGAGTTTTGGGCTGGAGAGATCGAACGGCGCCAAATGCTACATGTTGTCAGCAAGCGAGCTGGTAATCGAATG
GATGCATGAAAATCTTTACTGGACAAGGAGGACCGACCCTGATTCAAGGTATACAGATGTACTAGTATACTTTATTTTTT
GTT------------------------------------------------------TATATATATTGTTTAATGGATTA
CTCTAGCTAGCTTGCCTTATAGTACCACTAAGCAGTACTGGTAAGTGGTAAGCTAGGTGTAAGACTGGTAGGACTCGCTT
ACTACTCTCTCCGTCCCAAAATTCTTGTCTTAGATTTGCCTAGATACGGATGTAACAAGATTGCATGTTGATCTGTTTGA
CAATGAACTGAGATAGGTTCTCCAAGGTGGCAGAGCTTCTCTCAGTCTGCTGGCTCCACATCTACGGCACGATCAACAGC
AGGGAGCTCACTCCAGCCACCCACTACGCGGCCTACCTCGTCTTCAAGCTCACCCATGATGCCTCAGGCCTCAGTTCCCC
GCGGCAGACATCGTTCGTCAAGGTAGGTGGCGGGCCGTGTCTCCAGTCCTGCCGGCCTTCCAGCACCAGCGGCGGTGCCT
CTTCATCCCTGCTGGTGGGGAGCACCCACACAGTGTCTCTCCATCCCTGCAACCGTGCTTCATGCACCCGTAACGGCGCT
GCGGCTGCGGAGCCGCACGAGCACGAGCAAGGAGGAGGAGTCGGCGGTGTCGTGAGGTACCCGCGGCATCGGGTCGACGG
GTGGTTGGAACTGGAGATGGGCGACTTCCACACGGACACGGACATATGCGGTGGGGATGATG------------TTATGA
TGGAAGTGCATGAGTGGGAGGAGCTCAAGTGGAAGAAGGGACTCATCATCGAAGGAATCGAGATCAGGCCTAGAAATTAA
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>chr4A_1_TraesCS4A01G319200
AAGCTCATTTGTGTGCAGTTACAAGCTGTTGAATGGCTGGGTTAGTAGCCAGGCTCAAAGATACTACGAAATACAAGGAC
CTATCATATGTGTGGTTGGGGAATAACAACAGAACATACATATAGGAGAGAAGCTAAATAGGGCTATAAGTGTGGCTTGC
AATCCGAGGCCGCCTCCTGGCATCCCTGGCCCCGAACCCACCCCCGCACCAAGCCTTCGGTCTTTGGCCACTGAGCATCG
TAGGAGAGGGAGAGAAAGGCCACTCCTTCCCCACCCCATGAGCTCGCGGGATCACCAGAGCACGGGGGCAGGGGCGGTTG
AGCCTCTGTGATGTATTGCTATCTTTTCCGTCGTATTCATATTTTTATGTACACTTGAATACCCTACGTTGTAACGGGAT
AGAAATATTCTAGTATATTAGCTCGTGACTTACCTGCCCATTTTAATATGGTTCTGTAAATAAATGTTTATCAGATCCTA
TCTGTGATTGTGTAAATAAATGTTTGGTAAATCAATTAAGAAGAAATTGGTACAGAAGGTAACTAATTAAGGTAATTGAT
TAGCATACGGGGAAGGTGCGGAAAAAAGTGTGATGGAACTAAAAAACGGTTGGACGAAAAAAACCCATGAAGGAAGGTGA
TGTGAGGGGGAAGAACCGGTTGACGAAGCGTTCTGCTCTGCTGGTAGGAAAAGAAATACTACTCTTTTTTTTAAGAAGTG
GAGAAATTAGAGATATCCTAGATTACGTTTCTCTCATCTTTATTGCATCAAGAGCAAAAAAAAAAGAACACCAGACCAAG
GGTTAGTCATAAATACGTGTGTCCTGTGTTCTACAAAAAAAAACGTGTGTCATGGTGGTGTGCTGAGTCAAATGCTGTAC
TTCTGTGTTTCTAAAAGGATTTGGAAAAGAATATAAAACGGCAAAACAAACTTTAATTTGCTGCGTGGGCTTATTAAACG
CACGGGCGCTGCCTGGCTAGCTACTCCGGGGTTGGTCCATATGGAGGTGGAACGCGTGAAGAAGCTGGCGAGGGAAGAAG
AAAAGGCCCAAAGCAGAATAATCCAGGGAATCCCGGAGGAATGTCTGGCGAAGGCCATCGGTCTGACCTCGCCAGCCGAC
GCCTGCCGCGCGGCCGCAGTGTCCACCGCGTTCCGGTCGGCGGCGGACTTGGACGCGGTGTGGACACGGTTCCTGCCGCC
GGACTGCGACGCCGTCCTGGAGCGGGCCGTCCACCTCGTGGATGCTCCCTCCAAGAAGGAGCTCTTCATGGACCTCAGCA
ACGAACACGTCGTCCTCGACGATGGCAAAATGGTCTGTCGATCAGCCCTTTACTTTTGCAGTTGCACTTAGCTTTCTGAC
GATGGATTTGGTTAAACACGCATGGGCTATCAC-----------------------------------------------
------TAGAGTTTTGGGCTGGAGAGATCGAACGGCGCCAAATGCTACATGTTGTCAGCAAGCGAGCTGGTAATCGAATG
GATGCATGAAAATCTTTACTGGACAAGGAGGACCGACCCTGATTCAAGGTATACAGATGTACTAGTATACTTTATTTTTT
GTT------------------------------------------------------TATATATATTGTTTAATGGATTA
CTCTAGCTAGCTTGCCTTATAGTACCACTAAGCAGTACTGGTAAGTGGTAAGCTAGGTGTAAGACTGGTAGGACTCGCTT
ACTACTCTCTCCGTCCCAAAATTCTTGTCTTAGATTTGCCTAGATACGGATGTAACAAGATTGCATGTTGATCTGTTTGA
CAATGAACTGAGATAGGTTCTCCAAGGTGGCAGAGCTTCTCTCAGTCTGCTGGCTCCACATCTACGGCACGATCAACAGC
AGGGAGCTCACTCCAGCCACCCACTACGCGGCCTACCTCGTCTTCAAGCTCACCCATGATGCCTCAGGCCTCAGTTCCCC
GCGGCAGACATCGTTCGTCAAGGTAGGTGGCGGGCCGTGTCTCCAGTCCTGCCGGCCTTCCAGCACCAGCGGCGGTGCCT
CTTCATCCCTGCTGGTGGGGAGCACCCACACAGTGTCTCTCCATCCCTGCAACCGTGCTTCATGCACCCGTAACGGCGCT
GCGGCTGCGGAGCCGCACGAGCACGAGCAAGGAGGAGGAGTCGGCGGTGTCGTGAGGTACCCGCGGCATCGGGTCGACGG
GTGGTTGGAACTGGAGATGGGCGACTTCCACACGGACACGGACATATGCGGTGGGGATGATG------------TTATGA
TGGAAGTGCATGAGTGGGAGGAGCTCAAGTGGAAGAAGGGACTCATCATCGAAGGAATCGAGATCAGGCCTAGAAATTAA
TAATGGTGAACAAATTAATCTCCTCGTACCATATTGTAAGTCGTGACTAAATAATTTGTCTCGGTTTGTACTCTTTGATC
GACTGTTTGAATAAGAATATGTTTTAACACGGTACAGCACGCGCAACACTGTTGCATGGATTTCCTAAATCGTTGTTGTT
TTGGTTGTGTGTGATAGAGGGGGTCCATCCTATACGATTCAAAGAATCGTTTGTGATAGGGCGAGCGGCTACTGACGATT
TTCTAAAGTAATCGTATGCAAAGTCGCGGACTATCCCACACGTTAGACCTCGATGTTACATTTGTGATCCTCGAGACATC
CAAAACGATTACGCGGATATACTCGTATGCAAAAGATGGAATCACAAACATTTAATCTACCTATCTGTTTGCGATAGGTA
CATTATCACAAACGGTTAATAACGGTAAAATGTGTGTGGTGCCTCTACTATCATCTGCGTGTTCATTTCATAACTCCTCA
GTCATCTTTGTGTACATCATGACTCAGTAAAGCTTCTAGTGCATGAACATACTTCCTCTTTTTTCCTTTGATCCTGTAGA
TGCAGTAGTATTTCTTGAAGATTTCACCGAAGCACAAATGATGCAGTCCTGGATCTTCTCCTTTTTCCTTTTGGCAAGGC
ATGTTGTGATAATCATGCGCTTGGTTGGGAGGAGATGTCGCCTTGCTTGGGACGGGTGATAATCAACCTGCTCACGAGAG
GGTTGGGATGGCGCCTGGAAATCCCGTCGAGCTCAGGGTTGTGGGACTCCGGAGGCCGCTGGCGAGCCCTCCATGGCCAC
AACGGCAGCAACCTCCATCATCGCGAGATCCACGACGACTCGGGAAGGGAGAGGAGCGGCGTATTCCGGAAACGCAACTA
TTCGAGTTTAATGGAGGTGGTGAATCCAGCTGGTTGATTATCCAAAACTACAGGGTTCCTTTTGTAAAGTTACTAATAAC
GGACGGGCAAAATCATTAATCCCTTTATTAGTAGGTATAG
>chr5B_1061
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--------------------ATGCAGCGAGTCCCGGAGGAATGCCTGGCGATGGCCATTGGCCTGACCTCACCGGCCGAC
GCTTGCCGCGCCGCCGCGGTGTCCGCGGCCTTTCGGTCAGCGGCGGACTCCGACGCCGTGTGGGAGCGGTTCCTGCCGCC
CGACTGCGACGCCATCCTGGAGCGGGCCGTCCACCTCGTAGACTCCTCCTCCAAGAAGGAGCTCTTCATGGACCTCAGTG
ACGAACATGTCCTCCTCGACGATGGCAAAAGGGTGAGTGAGTGCTAGATTTCCTCGCGACAAAAAGATCATCGATTTGTT
CAATCTGTTTCTCTGATGAAGTAGAGTACCGATCGATCGGACATATGCATGCATGGCTTCTAATTTATGACCTGGTTAAT
GTTCGTTAGAGTTTTGGGCTCCAGCGATCGACTGGCGCCAAATGCTACATGCTATCTGTGAGCGACATGGGAATCGCTTG
GGGTCATACAGATCTTTACTGGAGAGAGTTGTCGGACCCAGATGCACGGTAATTAATTCCCATATACTATACCATGGGGG
ATTTGATCATTTGCCCCCACTTTACGTTGCACTTTGATAGTACTGTACTACCTCTCATACATATCTCGGAAATTGCATTA
CTTGTACAAGGTTAATTGCCTTGTGTTCCTTTAATTAA------------------------------------------
----------------------------------------------------------------------ATTTGTTCGA
CGATTAAGCTTAGG------TCCAAGGTGGCAGAGCTCGTGTCAGTGTGCTGGCTGGGCTTGTCTGGCCGAATCAGCAGT
AAGGAGCTCTCACCAGGCACCCACTACGCAGGCTACCTCGTCTTCAAGCTCACACACGACGCCCACGGCCTGAGCGCCCC
GCGCCAGGTTTCATATGTTGAGGTAGACGGCCAGGTGGTGGC--------------------------------------
----------------GGGGAGCGTCCGCACGCCGTCTTTCCATCCCTGCAACCGTGCCGCTGCTTCCTGCGGCGAGGCC
GGA------GAGCCGCACGAGCACGCGGAGGAGGACGGCGTAGGGGGCGTCAGGAGGTACCCAAGGCAACGGGACGACGG
GTGGCTGGAGCTGGTGATCGGCGATTACCACACAGGCACA---------GGTGATGATGATGTAGGAGCAGATATTAAGA
TGGAACTGCATGAGTGGGAGGAGCTCAAGTGGAAGAAGGGGCTCATCATCCAGGGAACCGAGTTCAGGCCTA--------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS--S---S--S-------------S-------S------S--S--------S--S------
--S--------S-----S------S-S--S--S-----S----------SS-----S------SSS--------------
S------------S-------------------------S--SS-SS-------------------------------SS
-------S---S------------------S---SS--SSS-SSSSSS---S--SSS-SSSSSSSSS-S-S-SS-S--SS
S-SSSSS--SS-SSS-SSSSSSS-S-SSSSS-S-----------------------------------------------
--------------------SS--S------SS------------------S-S--S-SS-----SS---S-----SS--
-SSS---SS-S------------S-SS-SS-S-S-----S---S--S----SSS-SS-SSSS--SSS--SSSS--SSSSS
S----------------------------------------------------------S----S-S-SSS-S--S----
--SSSS-S--S--SSS-SSSSSSSSSS-SSSSS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S----S--
-S--S--SSSSSSSSSSSSS-----------------SS-S-----S--------SSS-S-S-SS---SSS----S---S
-S-------S-S----S------------S-S---------------------S--S--S---SSS-----S--SS----
---S---SSS--S-SS--SS------SS---SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS-------SS--S---SSS----S-------------------SS-SSSSS--S-SSS--SS--S
-SSSSSSSS----------------S-S-S-SS-SS--S--S--S--S---SS---------SS----S----S------
----S----S----S---S-----S-S------S-S---SSSSSSSSSS----SS----------------------S--
-----S----------------------------------S---------S-S----S----S---------SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_869
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-------------------------------------------------TCATGGTGGTGTGCTGAGTC-----------
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>reverse_1896
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-------------------------------------------------------CCACATCTACGGCACGATCA-----
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>forward_1003
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-----------------------CTCCGGGGTTGGTCCATATG-------------------------------------
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>reverse_2078
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-----------------------------------------------------------------------------CCT
CTTCATCCCTGCTGGTG---------------------------------------------------------------
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>forward_1985
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---------------------------------------------AAGCTCACCCATGATGCCTC---------------
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>reverse_3209
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--------CAACCTCCATCATCGCGAGA----------------------------------------------------
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