>input_sequence_55618
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---ATGGGCGGCCTGAGGAGCACGCAGCACGACTGCGGCGGCAGCGGCGGCAGCGTCGGCCACTCGGTCTCATTCCTCCT
TGGGGCTCTCCTCCCCACCGTGCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGACGAGCAGCTGTCCAGCATATCGACCT
TCAGGTTCGGGAACGG---------------ATCGGCAGCGCATCAACTGACTAGCCATGCCGCTAACCTCTCGACCGAT
G------------GCGACGCAAAGGTACGC---ACAGTCGTCGATCTGTAGTGCGTACAATGGCCGTGA-----------
--A-GGCTGGGAGATTAACCGATCTGCATGCGTGGCCACAGGCGCAGGAGGAGTCATTCCCGGGGCTGGCGGAGCTGCTG
CCGAGGGTCGCCATGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCCGGCTCCCTGCTCGA
CCTCTTCCGCGGGAGCTTCCGCGACGGCGAGGGGATCGCGCACCTCCTCAACCACACACTCATCGTCGCCGCTGACCCCG
GCGCCTTGGCCCTCTGCAAGGCCGTGCACCCCCACTGCTACCTCCTCCAGGTCATGGCCGCCGGCGTCAGCTCCGCCAAC
GGCTTCATGACCAGAAGCTACCTCGAGCTCGTCTGGTCCAAGCTCACCTTCCAGCACCGCGTCCTCCAGCTCGGCTACAA
CTATCTCTACACCGTAAGCTAGCTAGACACCCTCACCATTTCTCTAGA--------------------------------
TTTCTCGTACGTACATTTCACCGAATGAAGTGAAATTTG---TTATGAT-------------------------------
------------------------------GCAGGATCTGGATGTGATGTGGCTGCGCAACCCGTTCCGGCACATCAGCC
TCTACGCCGACATGGCCGTCTCCACCGACCGGTTCAACGGCAACGCGGAGGACCTGACGAACGCGCCCAACACCGGCTTC
TACTACGTCAGGTCCACCAACCGCACGGTGGAGATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGC
C---CACGACCAGGAGGTCTTCGAGGCGATCAAGGGCGAGTTCGTCGGCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCG
ACACGGCGCTCTTCGACGGCTTCTGCGAGTACCACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTC
CGGCTCGCGACCAAGATGCACGACCTCAGGAACGTGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGACGCCGCCGGA
GAAGATGAGCAGCAAGCTCCGGTGGACGTACCCCGCCAAGTGTGCGGCGACGATGAAAATACCAGCATAA----------
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>chr3B_1_TraesCS3B01G464200
GAGGTAGGTGGAGACTGAGAGGAATGTGCTCGGGCTGACGGCGCGGAAGAGGTTGTGGCTAGGGTTATGGATGTCGGCAT
GCTTAAATAGCCAGACTTTGGCCTTGGACGGTGAGCCGGAGCGGCGCCATGCGGCGTTCACACCCCCACTGGCCGGAGGA
GACTCCCGTCGAACTGCTGGGTTTCCGCGCGATTTCGCGTTGGACACGGCCGTTAGTCCGACGTGACGGACGTGCCCGGG
CCTCCTCATATTCGCCTTATATTTGGGCTGGATATGAGGGATGCAGGTCAACCCGAACGTTTGAGGCGCCCGTCTGGGTC
GGGTTTCCCTGACCGGGCCGTCCGGCCAGGCATTTGAGGCGGGTATGGGCGCCCGGCTGTAGATACTCTTACATCCAGGT
CAGTGAACCACCATGCAACGACTACAAACTAAAGCGAGCCGAAGTCGCGTCATAGCCCTCCCTCACCCTATGTGTCAAGT
AAAGGAAAACATTTCTTCCAAAGGTGGGTGATGTTTTCGTTGATATCAAGGTCCATATATATGGTGTCATCGTTAATCTC
AACAATATCCATTGGCTTAGTCTCTTAAAGTTGTTACTATACGAGCGTCTGTGCCTGCACATTGTTTCTCTGAAAAAGAA
ATTCAAATACTCGTCGGAAACCGCAAGCGCGCATATGCATAGGGGAAGGAAGCGACGAATGCATTGGCGTGCAGTACACG
TACGATTGACGGGGCCCGGCTGAACTGACTGAAATTAAGGAATGGATGCGCATGGACGCAATAGGATTAAC--GGCCTTG
CATTGCTTCGCGTGCCTGGTCGGCGTTTGAAGAG-TCAAGACACGGC---TAGCTAGGACTAGGAGCAGTACTACTATAC
TACTACTACTACTCCTTGTAAGACGCACTAC-------------------------------------------------
-------------TATATTCAGCAAATTAAGGTGTTTGGCAGACTAGATGCATACGTCCGCCAACTAGTACCACTG----
-----------------------------------------------CCACCGACGAGTACTGATC----TGGTGCGGTC
GACATGGGCGGCCTGAGGAGCACGCAGCACGACTGCGGCGGCAGCGGCGGCAGCGTCGGCCACTCGGTCTCATTCCTCCT
TGGGGCTCTCCTCCCCACCGTGCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGACGAGCAGCTGTCCAGCATATCGACCT
TCAGGTTCGGGAACGG---------------ATCGGCAGCGCATCAACTGACTAGCCATGCCGCTAACCTCTCGACCGAT
G------------GCGACGCAAAGGTACGC---ACAGTCGTCGATCTGTAGTGCGTACAATGGCCGTGA-----------
--A-GGCTGGGAGATTAACCGATCTGCATGCGTGGCCACAGGCGCAGGAGGAGTCATTCCCGGGGCTGGCGGAGCTGCTG
CCGAGGGTCGCCATGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCCGGCTCCCTGCTCGA
CCTCTTCCGCGGGAGCTTCCGCGACGGCGAGGGGATCGCGCACCTCCTCAACCACACACTCATCGTCGCCGCTGACCCCG
GCGCCTTGGCCCTCTGCAAGGCCGTGCACCCCCACTGCTACCTCCTCCAGGTCATGGCCGCCGGCGTCAGCTCCGCCAAC
GGCTTCATGACCAGAAGCTACCTCGAGCTCGTCTGGTCCAAGCTCACCTTCCAGCACCGCGTCCTCCAGCTCGGCTACAA
CTATCTCTACACCGTAAGCTAGCTAGACACCCTCACCATTTCTCTAGA--------------------------------
TTTCTCGTACGTACATTTCACCGAATGAAGTGAAATTTG---TTATGAT-------------------------------
------------------------------GCAGGATCTGGATGTGATGTGGCTGCGCAACCCGTTCCGGCACATCAGCC
TCTACGCCGACATGGCCGTCTCCACCGACCGGTTCAACGGCAACGCGGAGGACCTGACGAACGCGCCCAACACCGGCTTC
TACTACGTCAGGTCCACCAACCGCACGGTGGAGATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGC
C---CACGACCAGGAGGTCTTCGAGGCGATCAAGGGCGAGTTCGTCGGCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCG
ACACGGCGCTCTTCGACGGCTTCTGCGAGTACCACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTC
CGGCTCGCGACCAAGATGCACGACCTCAGGAACGTGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGACGCCGCCGGA
GAAGATGAGCAGCAAGCTCCGGTGGACGTACCCCGCCAAGTGTGCGGCGACGATGAAAATACCAGCATAA----TGGCTT
TTTACTAGTTCGTGTAGTGACCTTTTTTTTATGGAGGGAGTTCCTATAGTAACCTTACGAACTTTAATGCAGTGATTTGG
TTTAGACACTTTAGAAGATATTTCTATGGAAGAATAGATGTTGGTATTTGGACTCGACAATGGGCCTGAATCTTAGCTTC
ATTTCTTCAGTAGCATTTTGGAATCATGTTGCAATTTTTTTATATTTTTTTTTTGAAAATACACCAATGACATACCATAT
TTTTATAGAAGAGAGAAGGTTAATTACAAGAGCGGCTTAGTGTGGATGCGAACATCTACAAAGGCACGACACCACCTTAC
ACTAATGTTAAAACAAAGGTCACTCTCTCACAAAGGGGTATAAACCACCAATTCCGAGACCTGCCTCGCGCCACTCTTTA
ATCTCTTCTAAGACTATGTCTACCAATTGTCTAGCCGTCCGTTGTTGTTGTTGCCTGTTGAAGACCCTAGCGTTTCGCTG
ATTCCATAACAGCCAGGCGGTACCAATCACGAAGGAGTCGAAACCACGCCGAGACTTGCCTGAGAAGTTGGTTCTTTGGC
CAAGCCACCAACCCTGGAACATGCCCGTGGTGGA--AGGGATGTCAATATTGATTTGGAGCCTGTCGCAACACCCATGCC
ACACTTCCCTCGCGTAGACACAATGCCAGAGAATGTGGTCCACGTTGCCCCTCTTCCTGCAGGCAAAGATAACAAGGCGA
AGGCTCATCCTGAAGCCCGTGTCTCGCACGACGATCAAACGTCTAGAGGCGATATTTGGTTGTTAACCATGCAAAAATCT
TGCACTTTAGAGCTGCCTAGCTCCTCCAAATGCACTCATCTGTGGGAGATCTCTCAAGGCCCATGCAAAGCCTTTTGTAT
ATTGACTTCACCGTGTAGTTGCTAGACGGATCGGCTGGCCAAAGGAACTCATCTGGTGCATCAGGGTTGCGTGGGACGGT
GGCGATCGCGAGGCAGAGATTGGCCACCTGCATGTG
>chr3A_684
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-------------------------------------------GGAAGGAAGTGACGAATGCATTCGCGTGCAGTACACG
ACT----------GCCCGGCTATACTGACTCAAATTAAGGAATGGATGCGCACGGAGGCACTCGGATTAAC--GGCC---
--TTGCTTCGCGTGCCTGGTCGGCGTTTGAGGAGATCAAGACACGAC---TAGCTAGTAGGAGTAGTACTATAG------
---------TACTCCTTGTAAGACGCACTAGGATTGACCTTGCTTCGCGTTCATCCTAGAGATCTATGGTAGTACCGTAG
TA----GTACTCTTATATTCAGCC----AAGCCCATCGACAACAAGTGACGTAGTAGTCTTACC----------------
-------------------------CGGGCCTTTGCAACAAGTACGTCCACCGACGAGTACTGCTC----CGGTGCGATC
GGCATGGGCAGCCTGAGGAGCACGCAGCACGACTGCGGCGGC---------GGCGTCAGCCACTCGCTCTCGTTCCTCCT
TGGGGCTCTCCTCCCCACCGTGCTGCTCCTCTTCCTCGCCTCCGACCGGGTCGACGAGCAGCTGTCCAGCATATCGACCT
TCCGGTTCCGGAACGG---------------ATCGTCAGCTCATCAGCTGACTAGCCATGCTGCCGACCTCCCGACCAAT
GGCTCGGATGGTGGCGACAAAAAGGTACGT---ACAGTTC---ACTTGTAGTGTGTGAAATGACCGTGA-----------
--AGGGCTAGGAGCTTAACCGATTTGCATGCTTGCCCACAAGCGCAGGAGGAGTCATTCCCGGGGCTGGCGGAGCTGCTG
CCGAGGGTCGCCATGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCCGGCTCCCTGCTCGA
CCTCTTCCGCGGGAGCTTCCACGACGGCGAGGGGATCGGGCACCTCCTCAACCACACCCTCATCGTCGCCGTTGACCCCG
GCGCCTTGGCCCTCTGCAAGGCCGTGCACCCCCACTGCTACCTCCTGGAGGTCATGGCCGCCGGCGTCAGCTCCGCCAAC
GGCTTCATGACCAGAAGCTACCTCGAGCTCGTCTGGTCCAAGCTCACCTTGCAGCACCGCGTCCTGCAGCTCGGCTACAA
CTATCTCTACACCGTAAGCTACCAAGCCACACATA-CATGCCTCTGAA--------------------------------
TCTCTCGTCTC-ACATTTCAACGGATGAACCGAAATTTGTTATGATAAT-------------------------------
------------------------------GCAGGACCTGGATGTGCTGTGGCTGCGCAACCCGTTCCGGCACATCAGCC
TCTACGCCGACATGGCCGTCTCGACGGACCGGTTCAACGGCGACGCCGAGGACCTGACGAACGCGCCCAACACCGGCTTC
TACTACGTCAGGTCGACCAACCGCACGGTGGAGATGGTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGCTGGC
C---CACGACCAGGAGGTCTTCGAGGCGATCAAGGGCGAGTTCGTCGCCGGCGAGCTGCGGATAAAGCTGGTGTTCCTCG
ACACGGCGCTCTTCGACGGCTTCTGCGAGTACCACGGCGAGATGGACCGGGTGTGCACGATGCACGCCAACTGCTGCCTC
CGGCTCGCGACCAAGATGCACGACCTCCGGAACGTGGTCGCCGACTGGAAGAGGTACTCGAGCC---TGCCGCCGCCGGA
GAAGATGAGCAGCAAGCTCAGGTGGACGTACCCCGCCAAGTGTGCGGCGACGATGAAAATACCGGCATAA----TGGCTT
TTTACTGGTTCCTGTAGTGACCTT--------------------------------------------------------
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>chr3D_734
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-------------GCCCGGCTGAACTGACTGAAATTAAGGAATGCATGAGCATGGACGCACTAGGATTAAAATGGCC---
--TTGCTTCGCGTGCCTGGTCGGCGTTTGAAGAG-TCAAGACACTACTAGTAGCTAGGACAAGGAGTAGTATAG------
---------TGCTCCTTGTAAGACGCACTCGGATTGACCTTGGTTCGCGTTCATCCTAGAGATCAATGGTAATATAAGTA
GGGATGGTACACTTATATTCAGCA----AAGGTGTTTAGCAGAGTAGGAGCATACATACGTCTGCATTCTAAGCTGGAGT
AGAGCAGAAGTAGTATATCGCCTTACGGGTCTCTGCAACAAGTCCGTCCACCGACGAGTACTGATCGATCTGGTGCGATC
GGAATGGGCGGCCTGAGGAGCACGCAACACGATTGCGGCGGC---------GGCGTCAGCCACTCGCTCTCGTTCCTCCT
CGGGGCTCTCCTCCCCACCGTGCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGACGAGCAGCTGTCCAGCATATCGACCT
TCAGGTTCGGGAACGG---------------ATCGGCAGCTCATCAGCTGACTCGCCATGCCGCTAGCCTCCCGACCGAT
GTCGGGGATGGTGCCGACGAAAAGGTACGC---GTAGTCC---AGTTGCAGTC--TACAATGCCCGCGA-----------
--T-GGCTGGGAGATTAACCGATTTGCAT------------GCGCAGGAGGAGTCATTCCCGGGGCTGGCGGAGCTGCTG
CCGAGGGTCGCCATGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTTCGCGCGGCCGGGCTCCCTGCTCGA
CCTCTTCCGCGGGAGCTTCCGCGACGGCGAGGGGATCGCCCACCTCCTCAACCACACCCTCATCGTCGCCGCAGACCCCG
GCGCCTTGGCCCTCTGCGAGGCCGTGCACCCGCACTGCTACCTCCTCCAGGTCATGGCCGCCGGCGTCAGCTCCGCCAAC
GGCTTCCTGACCAGAAGCTACCTCGAGCTCGTCTGGTCCAAGCTCACCTTCCAGCACCGCGTCCTCCAGCTCGGCTACAA
CTATCTCTACACCGTAAGCTACATAAGCCACCGTGGCTCAAAATA-----------------------------------
-CTCTCGTCTC-ACATTTCAGTGTTTGATCCGAAATTTGTTATTATGAT-------------------------------
------------------------------GCAGGATCTGGATGTGATGTGGCTGCGCAACCCGTTCCGGCACATCAGCC
TCTACGCGGACATGGCCATCTCAACCGACCGGTTCAACGGCGACGCTGAGGACCTGACGAACGCGCCGAACACCGGCTTC
TACTACGTCAGGTCCACGAACCGCACGGTGGAGATGCTGAGACGGTGGCGGGCGGCGAGGTCGCGGTTCCGGCCGAAGGC
C---CACGACCAGGAGGTCTTCGAGGCGATCAAGGGCGAGTTCGTCGGCGGCGAGCTGCAGATAAAGCTGGTGTTCCTCG
ACACGGCGCTCTTCGACGGCTTCTGCGAGTACCACGGCGAGATGGACAGGGTGTGCACGATGCACGCCAACTGCTGCCTC
CGTCTCGCGACCAAGTTGCACGACCTCAGGAACGTGGTCGCCGACTGGAAGAGGTACTCCAGCC---TGACGCCGCCGGA
GAAGATGAGCAGCAAGCTCAGGTGGACGTACCCCGCCAAGTGTGCGGCGACGATGAAAATACCAGCATAATTAATGGCTT
TTTACTAGTTTGTGTAGTGACCTT--------------------------------------------------------
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>chr3B_1036
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--------------------------------------CGGCGGCGGCGGCGGCGGAAGCCACTCGGCCTCGTTCCTCCT
CGGGGCTCTCCTCCCCACGCTCCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGGCGAGCGGCTGACCAGCATCTCCACCT
ACACCTTGGGGAACAACAATAATGGATCGTCATCAGCTCATCGTGAGCAGATGACCCATGATGCCAACCTCACGGACACG
GACACGACGGAGGAGAGGGT------------------------------------------------------------
-------------------------------------------------------GTTCCCGGGGCTGGCGGAGCTGCTG
CCGAGGGTGGCCACGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGCCCGGGCTCCCTCCTCGA
CCTCTTCCGCGCGGGGTTCAACAACGGCGAGGGGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCG
GCGCGCTGGCGCACTGCGAGGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAAC
CGCTTCATGACCAAGAGCTACTTCGAGCTCGTCTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAG
CTACCTCTTCACCGAC----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GTGGACATCATGTGGCTGCGCAACCCGTTCCGGTACATCAGCC
TCTACGCCGACATGGCCGTCTCCACCGACCGGTTCAACGGCGACGCCGAGGCCCTGACGAACGCGCCCAACACGGGCTTC
TACTACGTCAAGTCCACCAACCGCACGGTGGAGATGCTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCCGCCGA---C
C---CACGACCAGGCGGTGTTCGACGAGATTAAGGGCGAGCTGGCAGGCGGCGAGCTGCACATCAGGTTCGTGTTCCTCG
AGACGGCGCTCTTCGACGGCTTCTGCCAGCTCCACGACGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATC
GGGCTCGAGAACAAGGTGCACGACCTCACCAACATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGGCGGA
GAGAAGGGGCAGCGGGCGTAGGTGGACGGCCCCCGACCAGTG--------------------------------------
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>chr3D_1041
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-------------------------------------------GCGGTGGCGGCGGCAGCCACTCGGCCTCGTTCCTCCT
CGGGGCTCTCCTCCCCACGCTCCTGCTCTTCTTCCTCGCCTCCGACCGGGTCGGCGAGCAGCTGGCTAGCATATCCACCT
ACACCTTGGGGAATAAC---AATGGATCG---TCATCAGCTCATGAGCAGATGACCCATGATGCCAACCTCACGGACACG
G------------AGAGGGT------------------------------------------------------------
-------------------------------------------------------ATTCCCTGGGCTGGCGGAGCTGCTG
CCGAGGGTGGCCACGGACGACGGGACAGTGATCATCACGTCCGTGAACGAGGCGTGGTCGCGGCCGGGGTCCCTCCTGGA
CCTCTTCCGCGCGGGGTTCAGGAACGGCGAGGGGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCG
GCGCGCTGGCGCACTGCGAGGCGGTGCACCCGCACTGCTACCTCCTGGAGGTGACCTCCGCCAACGTCAGCTCCGCCAAC
CGCTTTATGAGCAAGAGCTACTTCGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAG
CTACCTCTTCACGGAC----------------------------------------------------------------
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-------------------------------------GTGGACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCC
TCTACGCCGACATGGCCGTCTCCACCGACCGGTTCAACGGCGACGCGGAGGCCCTGACGAACGCGCCCAACACGGGGTTT
TACTACGTCAAGTCCACCAACCGCACGGTGGAGATGGTGAGGCGGTGGCGGGCGGCGAGGTCGCGGTTCCCGCCGA---C
C---CACGACCAGGCGGTGTTCGACGAGATCAAGGGCGAGCTGGCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGG
AGACGGCGCTCTTCGACGGCTTCTGCCAGCTCCACGGCGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATC
GGACTCGAGAACAAGGTGCATGACCTCACCAACATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGGCGGA
GAGAAGGGGCAGCGGGCGTAGGTGGACGGCCCCCGACCAGTG--------------------------------------
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>chr3A_1050
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----------------------------------------------------GCGTCAGCCACGCGGTCTCGTTCCTCCT
CGGGGCCCTTCTCCCCACGGTGCTGATCTTCTTCCTCGCCGCCGATCGGGTCGGCGTGCAGCTGGCCACCATATCGAGCT
TCCAGTTCGGGAATGG---------------ATCGACTCACCAGCTGGCTACTAGCAATGCTACTAACCTCCCAGGTGAC
GGCTCG------GGCGGCGAAAAGGTACGTCGCGCAGTTC---ATTCGCAGTGTGTTGCATGGCATGGTACTGTATGCAC
AGT-GGTTGAGAAACTAACCGATTTCCGCCAT-----------GCAGGAGGAAGCATTCCCGGGGCTCGCGGAGCTGCTG
CCAAAGGTTGCCATGGACGACGGGACGGTGATCATCACGGCGGTGAACGAGGCGTGGGCGCGCCCAGGCTCCCTCCTCGA
CCTCTTCCTCGGCAGCTTCCGCGACGGCGACGGGATCGCGCACCTCCTCAACCACACCCTCATCGTCGCCGCCGACCCCG
GCGCCTTGGCACTTTGCCAGGCCGTGCACCCGCACTGCTACCTCCATGAGGTCACCTCCGCCAACGTTAGCTCCGCTAAC
AGCTTCATGACCAAGAGCTATCTCGAGCTCATCTGGGCCAGGCTCGAGGTCCCACAACGTATCCTCCAACTTGGCTACAA
CTATCTCTCCACCGTAAGCTACCCCG----------CATGCCTCTAACAATTTCACAAACCGTTGAGAAACATTGCATTC
TCTTTTTTCCC-TCATTTCATTTTTTAGTTGTGTTACATTTTATTATTTCAAAGAGTGAAAGATCACACACTATGTCTAG
GTTATGCATCTTCAGTTAATATTATTGATGGCAGGATGTGGATGTCATGTGGTTGCGCAACCCGTTCCGGCACATCAGCC
TTTACGCCGACGTGGCCATGTCGACCGACCGCTTCTATGGCAATGCTGAGGACCTACAAAATGTGGGAAACGGCGGCTTC
TACTACATTAGGTCGACAAACCGGACGGTGGAGATGCTAAGTCGTTGGCTGGCAGCGAGGTCGCGGTTCCCCTCC---GC
C---CATGACCAAGGAGTGCTGAACGAGATCAAGGCCGAGCTCGCAGCCGGTGACCTACAGATCAAGTTCGTGTTCCTTG
ATACGGTGATCTTTGGCGGTTTCTGCCAGTTCCACGAAGAGATGGACAAGGTATGTACGATGCACGCCAATTGCTGCATC
GGGCTCAAGAACAAGGTGGACGACCTCACCAACATGATTGCCGGTTGGAAGAACTACACGAGTA---AGACGCCATCGGA
CAAG----------------------------------------------------------------------------
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>chr3A_1330
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--------------------------------------------------------TTCCCGGGGCTGGCGGAGCTGCTG
CCGAGGGTGGCCACGGACGACGGGACGGTGATCATCACGTCGGTGAACGAGGCGTGGTCGCGGCCGGGCTCCCTCCTCGA
CCTCTTCCGCGCGGGCTTCAATAGCGGCGAGGAGATCGCGCACCTCCTCAACCACACCCTCATCGTGGCCGTCGACCCCG
GCGCGCTGGCGCACTGCGAGGCCGTGCACCCGCACTGCTACCTCCTCGAGGTCACCTCCGCCAACGTCAGCTCCGCCAAC
CGCTTCATGACCAGGAGCTACCTGGAGCTGGTGTGGGCCAAGCTGGAGCTCCAGCAGCGCGTCCTCCAGCTCGGCTACAG
CTACCTCTTCACCGAC----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GTGGACATCATGTGGCTGCGCAACCCGTTCCGGCACATCAGCC
TCTACGCCGACATGGCCATCTCCACCGACCGGTTCAACGGCGACGCCGAGTCCCTGGCGAACGCGCCCAACACCGGCTTC
TACTACGTCAAGTCCACCAACCGCACGGTGGAGATGGTGAGGCGGTGGCGGGCGGCGCGGTCGCGGTTCCCGCCGA---C
CCAGCACGACCAGGCGGTGTTCGACGAGATCAAGGGCGAGCTGGCGGGCGGCGAGCTGCGGATCAGGTTCGTGTTCCTGG
ACACGGCGCTCTTCGACGGCTTCTGCCAGCTCCACGGCGAGATGGACCGGGTGTGCACCATGCACGCCAACTGCTGCATT
GGGCTCGAGAACAAGGTGCACGACCTCACCAACATGGCCGCCGACTGGAAGAACTACACGAGCC---TAGCGCCGCCGGA
GAGAAGGGACAGCGGGCGCACGTGGACGGCCCCCGCCCAGTG--------------------------------------
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>chr3A_1766
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-----------------------------------------------AT-------------------------------
------------------------------GCAGGATGTGGATGTTATGTGGTTGCGCAACCCGTTCCGGCATATCAGCC
TCTACGCCGACATGGCCGTCTCCACCGACCGCTTCAATGGTGACGCGGAGGCGCTCACAAACGCACCCAACACCGGCTTC
TACTACGTCAAGTCCACGAACCGGACGGTGGAAATGTTGAGGCGATGGCGCGTGGCGAGATCACGGTTCCCGCCGA---C
C---CACGATCAGGCGGTCTTCAACGAGATCAAGGCCGAGCTCGCCGCTGGAGAGTTGCACAGCAAATTCATGTTCCTGG
ATACGGCACTCTTCGATGGCTTCTGCCAGTTCCATGGCAAGATGGACACGGTGTGCACAATGCACGCCAACTGTTGCATC
GGGCTCGAGAACAAGGTGCATGACCTCAGGAACATGGCTGCCGACTGGAAAAACTACACGAGCCAGGTGATACCGCTGGA
GAAGGGGAGTCACGAGTCCAGGTGGTCGTTCCCCGCCAAGTGCGAGGCATCGATG-------------------------
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>chr6A_2492
TTCTT---------------------------------------------------------------------------
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--------------------------------------------------TTTCTACAATACCCCACTGGCGTACCATAT
TTTCATAAAAAATAGAATGTTAATTACAAAAGCGGTCTATTGAAGATGCGAACATCTACAAAGGCTCGAAGCCACCTTAC
ACCAAAGA-AAAACAAAAGTCATTCTCTCACAAAGGGGTCTAAACCACCAACACCAAGTCCTGCTTCGCTCCACTCTTTG
ATCTCGTCTAAGGCTAAGTCTACCAATTGCCTCGCCGTCCGCTGCTGCTGTTGCCTATTGAAGACCCTAGTATTCTGTTG
TTTCCATGTCAGCCAAGCGGTACCAATCACGAAGGAGTCGAAACCTCGTCGAGCCTTGTGCGAGAATTTGGTTCTTTGGC
GAAA-CACCAATCTTGGAACCTGCCCATGGTGTT--AGGGATGTCAGCATTGACCTGTAGCCTGTCCCAACACCTATGCC
AACCCTCCCTTGCGTAGACACAGTGTCCAAGAATGTGGTCCGCGTTGT-TCTCTTCCTGCAAGCAAAGGAAATAGGGCAA
GGGTTCGTCCTGAAGCCCGTGCCTCGCACGACGGTCCGAAGTCCAGAGGTGGTATTTGATTGTCAACCATGCAAAAATCT
TGCAC---------------------------------------------------------------------------
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>chr3B_2493
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---------------------------------------------TTTTTTTTCGAGAGTATGCCTATGGCGTACCATAT
TTTTATAGAAGG-AGAATATTAATTACAAGAGCGGCGTAGTGTGGATGCGAACATCTATAAAGGCACGACGCCACCTTAC
ACCAAAGTTAAAACAAAGATCACTATCTCACAAAGGGGTCTAAACCACCAACTCCGAGACCTGCCTCGCTCCACTCTTTG
ATCTCCTCTAAGGCTATGTCTATCAATTGTCTAGCCATCCGTTGCTGTTGTTGCCTATTGAAGACCTTAGCGTTCCGTTG
TTTCCATAACAACCAAGCGGTATCAATCATGAAGGAGTCGAAACCACGCCGAAACTTGCCTGAGAAGTTAGTTCTTTGGC
CAAGCCACCAACCCTGGAACGTGCCCGTGGTGGA--GGGAATGTCAATATTGATTTGCAGCCTGTCGCAACACCCATGCC
ACACTTCCCTCGCGTAGACACAGTGCCCGACAATGTGGTCCACGTTGT-CCTCTTCCTGCAGGCAAAGATAACAAGACGA
AGGCTCATCCTGAAGCCCGTGCCTCGCACGACGGTCAGACATCCAGAGGCGATACTTGGTTGTCAACCATGCAAAAATCT
TGCACTTTAGAGGTGCCTAACTCCTCCAAATGCACTCGTCTGCGGGAGATCTCTCAAGGCCCATGCAAAGCCTTATGTAT
ACTAACTTCGCCGTGTAGCTACTAGACAGATAGGCCGTCCAAAGGAACTCATCTGGTGCATTAGGGTTGCATGGGACGGT
GGCGATCGCGAGGCAAAGATTGGCCACCTGCATGTG
>chr3B_2495
TTTTTT--------------------------------------------------------------------------
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----------------------------------------------------TCAAAAGTACGCCAATGGCGTACCATAT
TTGTATAGAAGGAAGAAGGTTAATTACAAGAGCGGCCTAATGTGGATGTGAACATCCAC-AAGACACATCCCCACCTTAC
ATCAAAGT-AAAACAAGGGTCACTCTCTTACAAAGGGGTCTAAACCACCAACTCCAAAACCTGCCTCACGCCACTCTTTG
ATCTCCTCTAAGGCTATGTCTACCAGCTGCCTTGCCGTCCGCTGCTGTTGTTGCCTATTGAATACCCGAGCGTTTCGTTG
CTTCCATATGAGCCAAGCAGTACCAATTACGATGGAGTCGAAGCCACGCTGAGTCTTGCCTACGAATTTAGTCCTCTGTC
CAAACCACCAAACCTGAAACGTGCCTGTGGTGGTGGGGGGATGTCAATATTGATTTGAAGCCTATCGCAACACCCATGCC
ACACTTCCCTCGCATAGACGCAGTGT-CGAAAATGTGATCAACATTGT-CTTCTTCCTGCAGGCAAAGATATCAATGTGA
AGGATCATCCTGAAGCCCATGCCGCGCATGGCGGTCAGACCTCCAAAGCTGATATTTGGTTGTCAGCCATGTGAAAATCT
TGCACTTTAGAGGTGCCCAGCTCCTCCAAATACACTCTTCGGTGGGAGATATCTCAAG----------------------
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>chr1A_2541
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-------------AGAATGTTAATTATAAGAGCGGCCTAATGTGGATGCGAACATCTACAAAGGCACATCGCCACCTTAC
ACCAAAGT-AAAACAACGGTCACTCTCTCACAAAAGTGTCTAAGCCACCAACTCCGAAACCTGCCTCACACCACTCTTTG
ATGTCCTCTAAGGCTATGTCTCCCAATTGCCTTGCCGTCTGTTGTTGTTGTTGCCTGTTGAAGACCCTAGTGTTTTGTTG
CTTTCATAACAACCAAGCGGTACCAATCATGAAGGAGTCAAAACCACGCCGAGACTTGCCAGAGAAGTTAATTCTTTGGG
CAAGCCACCAGTCCTGGAACGTGGCCGTAGTGGA--AGGGATGTCAATGTTGACCTGGAGCCAGTCGCAACACCTATGCC
ACACTTCCCTCACGTAGACACAATGCCCGAAAATGTGATCCACGTTTT-CTTCTTCTTGTAGGCAAAGGTAGCAACGTGA
CGGCTCATCCTGAAGCCCGTGCCTCGTGCGATGGTCAGACGTCCAAAGGCGATATTTGGTTGTCAACCATGCGAAAATCT
TGCACTTTAGAGACGTCCAGCTCCTCCAAATACA----------------------------------------------
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>chr5D_2709
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---------------------ACCAATTGTCTCGTCGTCCGCTGCTGCTGTTGTCTGTTGAAGACCCTAGCGTTCCGTTA
TTTCCATATCAGCCAAGTGGTACCAATCACGAAGGAGTCGAACCCTCGTCGAGCCTTGCCTAAGAATTTGGTTCTTTGGT
GAAGCCACCAATCCTGGAACCTGCCCGTGGTGGT--AGGGATGTCAGCATTGATCTGTAGCCTGTCCCAACACCCATGCC
ACACTTCCCTCGCATAGACACACTGCCCAAGAATGTGGTCCACGTTGT-CCTCATCATGTAAGCAAAGATAATAGGGCTA
GGGTTCGTCCTGAAGCCCGTGCCTTGCACGAAGATCCGACGTCCAGAGGCGGTATTTGGTTCTCAACCATGCAAAAATCT
TGCACTTTAGAGGTGCCCAGCTCCTCCAAATGCACTCATCTGTGGGAGATCACTCGAGGCCCATGCAAAGCCTTTTGTAT
ACCGACTTCGCGGTGTAACTGCTGGACGAATTAGCCGGCCAACTGAACTCATCAGGAGCATTAGGATTGCGTGCGACAGT
GGCGATCACGAGGCAGAGATTACCCACCTGCATGTG
>SNPs
SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------------S--------------
SSSSSSSSSSSSS-----------------------------------------------S----------------SSS
SS-------------------------------------------S--------------S-----S----SSSSSSSSS
SSSSSSSSS---------------------S-------------------------------------------------
------------------------SSSS---------------S---SS------S-S--S-SS-SSSSSSSS-------
-----------------------------------------------------------------------------S--
-S----------------------------------------S--------S-----S-------------S--------
--------------------------------------------------------------------------------
----------------------------------------S-----S------------------------S--------
-------------------S-------------------SSSS--S-------S--------------------------
-----------------------S-------S--S-----S---------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
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---------------------S----S-----SS-S---SS-----S---------------------------------
-S------S-SS--------S--S-----SS-------------------------------------------------
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-------------------S------------------------------------------------------------
------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S--------S------S-S--------
------------S-----------------------S---------------------------------S---------
--S--S---------------------------------S-----------S---------------------------S
-----S------S----------------------------------------------------------------S--
S--------------S----------------------------------------------------------------
--------------------S-----------------------------------------------------------
---------------------------S-------------------SS-------------------------------
---------------------S---------------S-----S-------------------S----------------
------------S-------------------------------------------------------------------
-S-------S--------S------------S---S-------------------------S------------------
------------------------------------
>forward_284
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------------------------GGGCTGGATATGAGGGATGC------------------------------------
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>reverse_1380
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-------------------CAAAGGTACGCACAGTCGTC-----------------------------------------
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>forward_420
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CAGTGAACCACCATGCAACG------------------------------------------------------------
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>reverse_2691
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--------------------------------------------------GACTCGACAATGGGCCTGAA----------
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------------------------------------
