CLUSTAL X (1.81) multiple sequence alignment input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TCCATATTAACTGCCGCTGATTTAGGAGGGGGTACATATATTTGGCAGCC chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AGTTATCCCCATTCTGCACTACTACTGCTGCTGCTGCTACTACTACTACT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CTACTCTTCTACAGCTGCGACCAACAGATCAACTCGATCTCATCAGCAAC chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AACCTGAAAAATATTATTTCCGCTGTTACACTTTACTTGAGCAGCAAACA chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AATTAACTTGGTCTGATAGGTTGGGGCACTAAAATATTTGTGGGCGTTTC chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TGTTAACATAAATCGGGGGCTCTTCTACACCTTGCTCAGATGAAAGGATT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TCTGGGCGTGTCTGTTAATATGAATCCGGGGGCTTCTCCACTCCTTGCTT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AAAAAAAAAGGGATTTCTGGGTTATTGTTACACTTCAGAGTGTAGGCAAT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 -----------------------------------------------AAT reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CAGCAGCACGTGACTCAGAACCAAACCAAATTTTGCATGTTTATGCATAT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS forward_417 CAGCAGCACGTGACTCA--------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TGTCCGGCACAGATCTTATATAAAAGCAAGATACTGCTCCGCATTCTTTC chr7A_494 -------------------------------------------TTCTTTC chr4A_494 -------------------------------------------TTCTTTC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TCATGCTCCCAGGTTTTCT------CCAGGTTAAGGT---GAAGAGCTGG chr7A_494 TCATGTTCCCAGGTTTTCTTTTTCCCTAGGTTAAGGTGAAGAAGAACTGG chr4A_494 TCATGCTCCCAGGTTTTCTTTTTCCCCAGGTTAAGCTGAAGAAGAACTGG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------------------------------------S---- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 GTGAGTGGAACCCAGGGTACGACCGTTACTGGAATGAGCGCGACATTCGG chr7A_494 GTGAGTGGAACCCAGGGCACGGCCGTTACTGGAAAGAGCACGACATTCGG chr4A_494 GTGAGTGGAACCCAGGGCACGACCGTTGCTGTAATGAGCGCGACATTCGG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------CATTCGG reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AGCCACCTTTCCTACAACTGTCAACGAGGCTCAGAGAACATGTGCTGCTC chr7A_494 AGCCACCTTGCCCACAACTGTCAACGAGGCTCAGGGAACATGCGCTGCCC chr4A_494 AGCCACCTTGCCCACAACTGTCAACGAGGCTCAGAGAACATGCGCTGCCC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------S--S-----------------------------S-----S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 AGCCACCTTTCCT------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TCACCAACCCTCTTGACTGCTGCTCAAATACAACCTCAGAGGTTTGGCTT chr7A_494 TCACCTACCCTCTTGACCGCTGCTCCAATACAGCCTCAAAGGTTCTGCTT chr4A_494 TCACCGACCCTCTTGACCGCTGCTCCAATACAGCCTCAGAGGTTCTGCTT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----S-----------S-------S------S-----------SS---- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CGACTCCGAATCCGACATAACTTGGCAACCAACTC----GGTTCTACAGG chr7A_494 CGACTCTGAATCCGACATAACTTCGCAACCAA----GTTGGTTCTGCAGG chr4A_494 CGACTCTGAATCCGGCATAACTTGGCAACCCTTGCTGTTGGTTCTACAGG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------S-------------------------SS---------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CATCTTCTAGTCTAATCCAAC---------CCCTTGCTGTCGCAGTTAAC chr7A_494 CATCTTCTAATCTAATCTAATCTAATCTAACCCTTGCTGTTGCAGTTAAC chr4A_494 CATCTTCTAATCTAATCTAA----------CCCTTGCTGTTGCAGTTAAC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------S-------S--S-------------------S--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 GGATTCTGTCGCCTTAGCGACACGTGGACAGTGTGCTCTCACCGCTAAAG chr7A_494 GGTTTCTGTTGCCTTACCGACATGTGGACAGTGTGCTCTCACCGCTGAAG chr4A_494 GGTTCCTGTCGCCTTAGCGACACGTGGACAGTGTGCTCTCACCGCTCAAG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S-------------------------------------------S--- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CGGAAACTGCACACTGCACAGGCTGCTGACGATGAAGGT----ATTCAAA chr7A_494 CGGAAACTGCACAGC-------CTGCTGATGACCAAGGTATTCATTCAAA chr4A_494 CAGAAACTGCACAGCCT----GCTGCTGATGACGGAGGTATTCATTCAAA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------SSSSSSSS--------S--S----------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TGACAACCTGAAAAAATTATATAATCTCTGTCCCGTACTCCTGTCCAATA chr7A_494 GGACGGCCTGAAAAAATTATAT--TCTCTGTCCCGTACTCCTGTTCAATA chr4A_494 GGACGACCTGAAAAAAATTACATTCT--------------CTGTTCAATA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S---S-----------------SS--------------------S----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TTTTTGCTAGGCATTCCTGGTTCTTTTGCAGGCAATAATCTGTTTGGTTA chr7A_494 TTTTTGCTAGGCATGCCTGGTTCTTTTGCAGGCAATAATCTGTTTGGTTA chr4A_494 TTTTTGCTAGGCATGCCTGGTTCTTTTGCAGGCAATAATCTGTTTGCTTA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------S----------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 --------------------------ATGGTTTGCAGTGTCACTGATGCT chr7D_1_TraesCS7D01G002900 ACCTTGTGTTTGCAGAACTTCATAAGATGGTTTGCAGTGTCACTGATGCT chr7A_494 ACTTTCTGTTTGCAGAACTTCATAAGACGGTTTGCAGTGTCAGTGATCCT chr4A_494 ACTTTGTGTTTGCAGAGCTTCATAAGATGGTTTGCAGTGCCAGTGATCCT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S---------------------------------------S----S-- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCAATTAACGAGACAAGTCGACCAGTTGTGGACCCTTCAGCATGCTTCTT chr7D_1_TraesCS7D01G002900 TCAATTAACGAGACAAGTCGACCAGTTGTGGACCCTTCAGCATGCTTCTT chr7A_494 TCAATTAATGAGCCAAGTCGTCCGGTTGTGGACCCTTCACTATGCTTCTT chr4A_494 TCAATTAATGAGCCAAGTCGTCCGGTTGTGGACCCTTCACTATGCTTCTT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------S---S-------S--S---------------SS--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTGGATAATGGCTGCAGGAACTATAGCCTGCGCCTCGCTCTTGGTACTTA chr7D_1_TraesCS7D01G002900 GTGGATAATGGCTGCAGGAACTATAGCCTGCGCCTCGCTCTTGGTACTTA chr7A_494 GTTCATAATGGCCGTAGGAACTATAGTCTGCTCCTCACTCTGGGGTGAAT chr4A_494 GTTCATAATGGCTGTAGGAACTATAGTCTGCTCCTCACTCTGGGGTGAAT chr7A_1114 ---------------------------------------CTTGCTACTTA chr4A_1114 ---------------------------------------CTTGCTACTTA chr7D_1115 ----------------------------------------TTGCTACTTA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --SS----------S-----------S----S----S------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGA----------------------------------------------- chr7D_1_TraesCS7D01G002900 TGA----------------------------------------------- chr7A_494 TCGTTGCATGCCAACAGATTGATGGGCGTTATAATCAGCTGACATGGCAG chr4A_494 TCGTTGCATGCCAACCGATTGATGAGCGTTATAATCAGCTGACATGGCAG chr7A_1114 TGA----------------------------------------------- chr4A_1114 TGA----------------------------------------------- chr7D_1115 TGA----------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 GTTCTCACTTTTCTGCCTATCCAGACTCTATGGCATGCTATGCTATTTAC chr4A_494 GTTCTCACTTTTCTGCCTATCCATACTGTATGGCATGCTATGCTATTTAC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 TAGCTT-------------------------------------------- chr4A_494 TACTCCCTCCGTCCCATAATGTAAGACGCTTTTTGACACTATTGTAGTGT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 TAAAAAAACGTCTCGCATTATGGGACGGAGGGAGTAGCTTTTTTTCATAC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 GCATACTTACTTACTTACGAAACCTTTTATCCCAAACAAGTTGGGGTAGG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 CTAGATATGAAACCCTTTCACGAGGACTTCCCAGGAGGTCACCCATCCTA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 GTACTACTCTCGCCCAAATGGGTTTCATACCCAAAAGACTGGCTAGTTTT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 TACGTTGGCTCGCCAAGCCTATCACAACCCTTAGATATGAAACCCTTTCA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 CGAGGACTTCCTAGGAGGTCACCCATCCTAGTACTATTCTCGCTCAAATG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 GGTTTCATACCTATGGGACTGGCTAGTTTTTACGTTGGCTCGCCAAGCCT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 ------------------------------------------TTTTTCAT chr4A_494 ATCACAACCCTCCTCCTTTACCCGGGCTTGGGACCGGCTATGTTTTTCAT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 ACGCATACCAACCCATAAATCGCGTGTAGGAACAGGGATGAGCCGTTAAT chr4A_494 ACGCATACCAACACATAAATCGCGTGTAGGAACAGGGATGAGCCGTTAAC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 AGGATTATGTAATATAGAATATATGGTCGTTGCTTGATTATACGTTATCT chr4A_494 AGGATTATGTAATATAGAATATATGGTTGTTGCTTGATTATATGTTATCT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 GCAGATTTGTTTGCCCTGGCTTTATAACATTTCTGCATCTGCACAAAAAA chr4A_494 GCAGATTTGTTTGCCCTGGCTTTATAACATTTCTGCATCTGTACAAAAAA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 --------------------------------------ATGATTCTTAAG chr7D_1_TraesCS7D01G002900 --------------------------------------ATGATTCTTAAG chr7A_494 A---TAACTTATCTTGCTGTGAGGCACACTTGGTACTTATGATTCTTAAG chr4A_494 AAATTAACTTATCTTGCTGTGAGGCACACTTGGTACTTATGATTCTTAAG chr7A_1114 --------------------------------------ATGATTATTAAA chr4A_1114 --------------------------------------ATGATTATTAAA chr7D_1115 --------------------------------------ATGATTATTAAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATAACAAAAAAATTGCACTTTATCGTATTTGTTTCTAGCTAGTGAGTAGT chr7D_1_TraesCS7D01G002900 ATAACAAAAAAATTGCACTTTATCGTATTTGTTTCTAGCTAGTGAGTAGT chr7A_494 ATAACGAATAATGTGCATTTTATCGGGTTTGTTTCTAGCTAATGAGTAGT chr4A_494 ATAACGAATATTTTGCATTTTATCGGGTTTGTTTCTAGTTAATGAGTAGT chr7A_1114 ATAAAAAATAATTTGCATTTTATTGTGTTTGTTTCTAGCTAATGAGTAGT chr4A_1114 ATAAAAAATAATTTGCATTTTATTGTGTTTGTTTCTAGCTAATGAGTAGT chr7D_1115 ATAAAAAATAATTTGCATTTTACTGTGTTTGTTTCTAGCTAATGAGTAGT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------S--S-----S--------S--------------S-------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AGTTTTCAGTTGATCACTTGGTTTATGT-TTTTGACTAATGAATTTCTTC chr7D_1_TraesCS7D01G002900 AGTTTTCAGTTGATCACTTGGTTTATGT-TTTTGACTAATGAATTTCTTC chr7A_494 AGTTTTCAGTTGATCACTTGG-TTAAGT-TTTTGACTAATGAATTTCTTC chr4A_494 AGTTTTCAGTTGATCACTTGG-TTAATT-TTTTGACTAATGAATTTCTTC chr7A_1114 AATTTTCAGGTTATCACTTGG-TTAAGTGTTTTTGCTAATGAGTTTCTTC chr4A_1114 AATTTTCAGGTTATCACTTGG-TGAAGT-GTTTTGCTAATGAGTTTCTTC chr7D_1115 AATTTTCAGGTTATCTCCTGG-TTAAGT-GTTTTGCTAATGAGTTTCTTC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------------S---S------------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTTTCATATTAA-CAGCAGGGACCGAATTCTGGAACAAACTACAGACAAG chr7D_1_TraesCS7D01G002900 GTTTCATATTAA-CAGCAGGGACCGAATTCTGGAACAAACTACAGACAAG chr7A_494 GTTTCATACTAAACAGCAGGGACCGAATTCTGGAACAAACAACAGACAAG chr4A_494 GTTTCATACTAAACAGCAGGGACCGAATTCTGGGACAAACGACAGACAAG chr7A_1114 GTTTCATACTAAACAGCCGGGACCTAATTCTGGAACAAACAACACACAAG chr4A_1114 GTTTCATACTAAACAGCCGGGACCTAATTCTGGAACAAACAACACACAAG chr7D_1115 ATTTCATACTAAACAGCCAGGACCTAATTCTGGAACAAACAACACACAAG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------S-------------------------------S--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATAAACCAATCATTGAAATCACCGCCAAGAGAGCTGTTCTTCTTCTTGTA chr7D_1_TraesCS7D01G002900 ATAAACCAATCATTGAAATCACCGCCAAGAGAGCTGTTCTTCTTCTTGTA chr7A_494 ATAAACAAGTCATTGAAATCACCGCAAAGAGAGCTGGTTTTCAAATTGTA chr4A_494 ATAAACAAATCATTGAAATCACCGCAAAGAGAGCTAGTTTTCAAATTGTA chr7A_1114 ATAAAGAAATCCTTGAAATCACAGCGAAGGGAGCTGGTGTTTTTGTGATA chr4A_1114 ATAAAGAAATCCTTGAAATCACAGCAAAGGGAGCTGGTGTTTTTGTCATA chr7D_1115 ATAAAGAAATCCTTGAAATCACAGCAAAGGGAGCTGGTGTTTTTGTCATA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------S------------------S----------S-S-----S----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTAGCTTCACTTTTCCTTATCCTCCGGTTCTACTTCATGTCCTCTTGGAT chr7D_1_TraesCS7D01G002900 GTAGCTTCACTTTTCCTTATCCTCCGGTTCTACTTCATGTCCTCTTGGAT chr7A_494 ATATGTTCAGTTTTCCTTC---TCCTGTTCTACTTCATGTCGTCTTGGGT chr4A_494 GGATGTTCAGTTCTCCTTC---TCCTGTTCTACTTCATGTCGTCTTGGGT chr7A_1114 GTAGCTTCAGTTTTCCTTCTCCTCCTCTTCTACTTCATGTCGTCTTGGGT chr4A_1114 GTAGCTTCAGTTTTCCTTCTCCTCCTGTTCTACTTCATGTCGTCTTGGGT chr7D_1115 GTAGCTTCAGTTTTCCTTCTCCTCCTGTTCTACTTCATGTCGTCTTGGGT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------S--------S------S---------------S------S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 ----------------------------------------CCTCTTGGAT reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CACCTGGCTGCTAATTGTGACATTTTGCATTAGTGGCAGTGAGGTATTTC chr7D_1_TraesCS7D01G002900 CACCTGGCTGCTAATTGTGACATTTTGCATTAGTGGCAGTGAGGTATTTC chr7A_494 CGCCTGGCTACTCATTGTATTGTTCTGCATTGGTGGTATTGAGGTATTTC chr4A_494 CGCCTGGCTACTCATTGTATTGTTCTGCATTGGTGGTATTCAAGTATTTC chr7A_1114 CGCCTGGCTACTGATTGTATTGTTCTGCATTGGTGGTACTGAGGTATTTC chr4A_1114 CGCCTGGCTACTGATTGTATTGTTCTGCATTGGTGGTGTTGAGGTATTTC chr7D_1115 CGCCTGGCTACTGATTGTATTGTTCTGCATTGGTGGTATTGAGGTATTTC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -S-------S--S-----SSSS--S------S----S-S----------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 CACCTGGCTG---------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTCGTGTATTCCCTATCTTGCG-CTCTTTTGATCACAAGGCCTGCCTATT chr7D_1_TraesCS7D01G002900 CTCGTGTATTCCCTATCTTGCG-CTCTTTTGATCACAAGGCCTGCCTATT chr7A_494 CTCGTATATTATCTATCTTTGCACTCTTTTGATCACAAGGCCTGTCTATC chr4A_494 CTCGTATATTCTCTATCTTTGCACTCTTTTA-------------TCTATT chr7A_1114 CTCGTATATTCTCTATCTTTGCACTCTTTTGATCACAAGGCCTGTCTACT chr4A_1114 CTCGTATATTCTCTATCTTTGCACTCTTTTGATCACAAGGCCTGTCACCT chr7D_1115 CCCGTGTATTCTCTACCTTGTGCTCG-TTTGATCACAAGGCCTGTCTATT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------S--------S-----------------------S----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGTACAAATACTTCTCTCGGCGCCTCGTTATTGAAGTGTTTGATTAGTTT chr7D_1_TraesCS7D01G002900 TGTACAAATACTTCTCTCGGCGCCTCGTTATTGAAGTGTTTGATTAGTTT chr7A_494 CGTACAAATACTTCTCTTGGCGCTTGGTTATTGAAGTGCTTGTTTAGTTT chr4A_494 TGTACAAATACTTCTCTTGGCGCTTGGTTATTGAAGTGCTTGTTTAGTTT chr7A_1114 TGTACAAATACTTCTCTTGGCGCTTGGTTATTGAAGTGCTTGTTTAGTTT chr4A_1114 TGTGCAAATACTTCTCTTGGCGCTTGGTTATTGAAGTGCTTGTTTAGTTT chr7D_1115 TGTACAAATACTTCTCTCGGTGCTTGGTTAGTTTTTTG------------ chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------S-S------------S---S------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTTTTATATTTGTTTGGAGCGGTATTCGGTTGTGAGTTTGCTTCTGTTCT chr7D_1_TraesCS7D01G002900 TTTTTATATTTGTTTGGAGCGGTATTCGGTTGTGAGTTTGCTTCTGTTCT chr7A_494 TTTATATT------------GGTATTCGGTTGTGAGTTTGTTTCTGTTTT chr4A_494 TTTATATT------------CGTATTCGGTTGTGAGTTTGTTTCTGTTTT chr7A_1114 TTTATATT------------GGTATTTGGTTGTGAGTTTGTTTCTGTTTT chr4A_1114 TTTATATT------------GGTATTCGGTTGTGAGTTTGTTTCTGTTTT chr7D_1115 --TATTTT------------GGTATTCGGCTGTGAGTTTGTTTCTGTTTT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---S---SSSSSSSSSSSSS--------------------S-------S- forward_417 -------------------------------------------------- reverse_2316 ---------------GGAGCGGTATTCGGTTGTGA--------------- forward_613 -------------------------------------------------- reverse_2318 -----------------AGCGGTATTCGGTTGTGAGT------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTGTCTTGCAGGGTATGCATTTTTGCTTGGTGACAATTATCTCTAGGTAA chr7D_1_TraesCS7D01G002900 GTGTCTTGCAGGGTATGCATTTTTGCTTGGTGACAATTATCTCTAGGTAA chr7A_494 GTGTCTTTCAGGGTATGCATGTTTGCTTGGTGACAATTATCTCTAGGTAA chr4A_494 GTGCCTTTCAGGGTATGCATGTTTGCTTGGTGACAATTATCTCTAGGTAA chr7A_1114 GTGTCTTTCAGGGTATGCATGTTTGCTTGGTGACAATTATCTCTAGGTAA chr4A_1114 GTG-CTTGCAGGGTATGCATGTTTGCTTGGTGACAATTATCTCTAGGTAA chr7D_1115 GTGTGTTGCAGGGAATGCATGTTTGCTTGGTGACAATTATCTCTAGGTAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------S----------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGCATGAAATTGTTTACGTTAAGCAA-GTTTTT-CAATGCTATTTATTTT chr7D_1_TraesCS7D01G002900 TGCATGAAATTGTTTACGTTAAGCAA-GTTTTT-CAATGCTATTTATTTT chr7A_494 TGCATGAAATAGTTTACATTAAGCAA-GTTTTT-CAATGCTCTTTATTTT chr4A_494 TGCATGAAATAGTTTACATTAAGCAA-GTTTTT-CAATGCTCTTTATTTT chr7A_1114 TGCATGAAATAGTTTACATCAAGCATTTTTTTTTCAATGCTCTTTGTTTT chr4A_1114 TGCATGAAATAGTTTACATCAAGCATTTTTTTT-CAATGCTCTTTATTTT chr7D_1115 TGCATGAAATAGTTTACATTGAGCAA-TTTTTT-CAACACTCTTTACTTT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----------S------S-----------------------S-------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 A-TTATTAA-CTCA-TTGTCTGTGCCTTGTGTGCGCCTTGTTTGCAGGAT chr7D_1_TraesCS7D01G002900 A-TTATTAA-CTCA-TTGTCTGTGCCTTGTGTGCGCCTTGTTTGCAGGAT chr7A_494 AGTTCTTAA-CTCG-TTGTCTGTGCCTCTTGTGCGCCCTGTTTCCAGGAT chr4A_494 AGTTTTTAA-CTCGGTTATCTGTGCCTATTGTGCGCCCTGTTTCCAGGAT chr7A_1114 A-TTTAT---CTCA-TTGTCTGTGCCTCGTGTGCGCCTTGTTTACAGGAT chr4A_1114 A-TTTATCTCCTCA-TTGTCTGTGCCTCGTGTGCGCCTTGTTTACAGGAT chr7D_1115 A-TTTATCTCCTCA-TATTCTCTGTCTCGTGTGCGCCTTGTTTACAGGAT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----S----------------------S---------------S------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTTTAAGGATTGCAGAAATAATACTGTACAGTTGCCCTTGTACGGGGAGG chr7D_1_TraesCS7D01G002900 TTTTAAGGATTGCAGAAATAATACTGTACAGTTGCCCTTGTACGGGGAGG chr7A_494 TTACAAGGATTTGAGAAATAATACTGTACAATTGCCGTTGTACGGGGAGG chr4A_494 TTATAAGGATTGGAGAAATAAAACTGTACAATTGCCGTTGTACGGGGAGG chr7A_1114 TAATAAGGATTGGGGAAATAATACTGTACAATTGCCCTTCTACGGGGAGG chr4A_1114 TTTTAAGGGTTGGGGAAATAATACTGTACAATTGCCATTCTACGGGGAGG chr7D_1115 TAATAAGGATTGGGGAAATAATACTGTACAATTGCCCTTCTACGGGGAGG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------------S-----------------S------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCTTAACCTTGTCTCTTGGAGTGGTACCATTCTGTACGGTCTTTGCCATT chr7D_1_TraesCS7D01G002900 TCTTAACCTTGTCTCTTGGAGTGGTACCATTCTGTACGGTCTTTGCCATT chr7A_494 TCTTAACCTTGTCTCTTGGAGTGGCACCATTCTGTACGGTATTTGCCATT chr4A_494 TCTTAACCTTGTCTCTTGGAGTGGCACCATTCTGTACGGTATTTGTCATT chr7A_1114 TCTTGGCCTTGTCTGTTGGAATAGTACCATTCTGTACGGTCTTTGCCATT chr4A_1114 TCTTGGCCTTGTCTGTTGGAATAGTACCATCCTGTACGGTCTTTGCCATT chr7D_1115 TCTTGGCCTTGTCTGTTGGAATAGTACCATTCTGTACGGTCTTTGCCATT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTATGGGCTGCTTATAGGCATTCTTCGTTTGCCTGGATAGGTCAAGACAT chr7D_1_TraesCS7D01G002900 CTATGGGCTGCTTATAGGCATTCTTCGTTTGCCTGGATAGGTCAAGACAT chr7A_494 CTATGGGCTGCTTATCGGCATTCTTCGTTTGCTTGGATAGGTCAAGACAT chr4A_494 CTATGGGCTGCTTATCGGCATTCTTCGTTTGCTTGGATAGGTCAAGACAT chr7A_1114 CTATGGGTTGTTTATCGGCATTCTTCGTTTGCTTGGATAGGCCAAGACAT chr4A_1114 CTATGGGCTGTATATCGGCATTCTTCGTTTGCTTGGATAGGCCAAGACAT chr7D_1115 CTATGGGCTGTATATCGGCATTCTTCGTTTGCTTGGATAGGCCAAGACAT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------S----------------S----------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CCTTGTAAGTTGAAC------TTATTCTTATGTTTGCTTGCTATGTTTTT chr7D_1_TraesCS7D01G002900 CCTTGTAAGTTGAAC------TTATTCTTATGTTTGCTTGCTATGTTTTT chr7A_494 CCTTGTAAGTTGGATTGATTATTATTCTTATGTTTGCTTGCTATGTTTTT chr4A_494 CCTTGTAAGTTGAATTGATTATTATTCTTATGTTCGCTTGCTTTGTTTTT chr7A_1114 CCTTGTAAGTTGAATTGATGATGATTCTTAGGTTCTCTTGCTATGTTTCT chr4A_1114 CCTTGTAAGCTGAATTGATGATGATTCTGATGTTCACTTGCTATGTTTTT chr7D_1115 CCTTGTAAGTTGAATTGATGATGATTCTTACGTTCGCTTGCTATGTTTTT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------S----------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AATCTTCACGGGGAAATACCCTTCATCCAAACACCCCCTTAGTTCTATTC chr7D_1_TraesCS7D01G002900 AATCTTCACGGGGAAATACCCTTCATCCAAACACCCCCTTAGTTCTATTC chr7A_494 AATCTTCACGGGGAAATACCCTTCATCCAAACACCCCCTTAGTTCTATTC chr4A_494 AATCTCCAAGGGGAAATACCCTTCATTCAAACACCCCCTTAGTTCTATTC chr7A_1114 AATCTTTATTTT-------------------------------------- chr4A_1114 AATCTTTATTTT-------------------------------------- chr7D_1115 AATCTTGATTTT-------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTTCCACTTTAGTTCAGAAGCAACTGAAAACATGCAACGTGTTTACTATC chr7D_1_TraesCS7D01G002900 TTTCCACTTTAGTTCAGAAGCAACTGAAAACATGCAACGTGTTTACTATC chr7A_494 TTTCCACTTTAGTTCAGAAGCAACTGTAAGCATGCAACATGTTTACTATC chr4A_494 TTTCCACTTTAGTTCAGAAGCAACTGAAAGCATGCAACATGTTTACTATC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------------S--------S----------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ACAGATCAAGTTGGAGTTCACATGATACGGTG----ATATAGACGTACTG chr7D_1_TraesCS7D01G002900 ACAGATCAAGTTGGAGTTCACATGATACGGTG----ATATAGACGTACTG chr7A_494 ACTTTAGTTCAT-------------------------------------- chr4A_494 ACGGATCAAGTTGGAGTTCACATGATACGGTGATATATATAGACGTACAG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S---------------------------------------------S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTTTTCTGAAATGCCAGAACATAAAACTAGCATGTCCAAATTCAGTGCGG chr7D_1_TraesCS7D01G002900 TTTTTCTGAAATGCCAGAACATAAAACTAGCATGTCCAAATTCAGTGCGG chr7A_494 -----------------AACTTAAAACTAGCATGTCCAAATTCAGTGCGG chr4A_494 TTTTTCTGAAATGCCAGAACTTAAAACTAGCATGTCCAAATTCAGTGCGG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------S----------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATCGAGGTTCCATTTTCCTAGTAGGATAAGCTAAACTGTGGTTTGTTTTA chr7D_1_TraesCS7D01G002900 ATCGAGGTTCCATTTTCCTAGTAGGATAAGCTAAACTGTGGTTTGTTTTA chr7A_494 ATCGAGGTTCCATTTTCCTAGTAGGATCAGCTAAACTGTGATTTGTTTTA chr4A_494 GTCGAGGTTCCATTTTCCTAGTAGGATCAGCTAAACTGTGATTTGTTTTA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------------------S------------S--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GAATTTACACATTGCAGTAAGATCAATCTCTTCAGAAGAATTTGATGCTG chr7D_1_TraesCS7D01G002900 GAATTTACACATTGCAGTAAGATCAATCTCTTCAGAAGAATTTGATGCTG chr7A_494 TAATTTACACATTGCAGTAAGGTCAATCTCTTCAAAAGAATTTGATGCTG chr4A_494 TAATTTACACATTGCAGTAAGGTCAATCTCTTGAAAAGAATTTGATGCTG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S--------------------S------------S--------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTTTTTTAGTTAAAGTACATTTCGGAACTGGCC----------------- chr7D_1_TraesCS7D01G002900 TTTTTTTAGTTAAAGTACATTTCGGAACTGGCC----------------- chr7A_494 -TTTTTTAGTTAAAGTACATTTCAGAACTGGCCAGTCTTTTGGGTATGAA chr4A_494 -TTTTTTAGTTAAAGTACATTTCAGAACCGGCC----------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S----------------------S-------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 ACCCATTTGGGCGAGAGTAGTACTAGGATGGGTGACCTCCTGGGAAGTCC chr4A_494 -------------------------------------------------- chr7A_1114 ---------------------------------------------AATCC chr4A_1114 ---------------------------------------------AATCC chr7D_1115 ---------------------------------------------AATCC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 TCGTGAAAGGGTTTCATATCTAGCCTACCCCAACTTGTTTGGGATAAAAG chr4A_494 -------------------------------------------------- chr7A_1114 TTGTAAGACGGTTTTTTATGACC--------------------------- chr4A_1114 TTGTAAGAGGGTTTTTTATGACC--------------------------- chr7D_1115 TTGTAAGAGGGTTTTTTATGACC--------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 --------------------------------------------TTCT-- chr7D_1_TraesCS7D01G002900 --------------------------------------------TTCT-- chr7A_494 GCTTCGTAAGTAAGTAAGTAAGTAAGTACATTTCAGAACTGGCCTTCTAT chr4A_494 --------------------------------------------TTCTAT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ---------------------------ATGCAAGTTTTCACATCATACTA chr7D_1_TraesCS7D01G002900 ---------------------------ATGCAAGTTTTCACATCATACTA chr7A_494 TATTACACTAGCAGCTGTGTATTTGCAATGCAAGTTTTCACATCATAC-- chr4A_494 TTTTACACTAGCAGCTGTGTATGTGCAATGCAAGTTTTCACATCATAC-- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------------------------------------------------SS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CATCAAATGTCAATCCAACTTATTATTGACCATATTCAGTTTTTAGCCCT chr7D_1_TraesCS7D01G002900 CATCAAATGTCAATCCAACTTATTATTGACCATATTCAGTTTTTAGCCCT chr7A_494 -ATCAAATGTCAATCCAACTTATTATTGACCATATTCAGTTTTTAGCCCT chr4A_494 -ATCAAATGTCAATCCAACTTATCATTGACCATATTCAGTTTTTAGTCCT chr7A_1114 ----------------------------------TTCAGTATTTAGT--- chr4A_1114 ----------------------------------TTCAGTATTTAGTCTA chr7D_1115 ----------------------------------TTCAGTA--------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GACAAGGTAAGCATGATTTG----------------------TCTAATAT chr7D_1_TraesCS7D01G002900 GACAAGGTAAGCATGATTTG----------------------TCTAATAT chr7A_494 AACAAGGTAAGTACCATAAGCCACAAGCTTAAGCATGATTTATCTAACAT chr4A_494 AACAAGGTAAGTACCATAAGCCACAAGCTTAAGCATGATTTATCTAACAT chr7A_1114 -------------------------------------------------- chr4A_1114 TTT----------------------------------------------- chr7D_1115 TTT----------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S----------S-SS--SS----------------------------S-- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GAATGCATTTAAATTAGCTATGGGCTGAACTGA-TTTTGTTTAGATATGC chr7D_1_TraesCS7D01G002900 GAATGCATTTAAATTAGCTATGGGCTGAACTGA-TTTTGTTTAGATATGC chr7A_494 GAATGCATTTATATTAGTTATGGGCTGAACTGATTTTTGTTTAGATGTGC chr4A_494 GAATGCATTTATATTAGTTATGGGCTGAACCGATTTTTGTTTAGATATGC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------S-----S-------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AAGTTTGCACTAGGTTTCCTAGATTTCACATGTTAATTTTCGTCCATGAA chr7D_1_TraesCS7D01G002900 AAGTTTGCACTAGGTTTCCTAGATTTCACATGTTAATTTTCGTCCATGAA chr7A_494 AAGTTTGCACTAGGTTTCCTAGATTTCACATGTTAGTTTTCGTCCATGAA chr4A_494 AAGTTTGCACTAGG------------------------------------ chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------------------S-------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTAAATCTT----------------------------------------- chr7D_1_TraesCS7D01G002900 CTAAATCTT----------------------------------------- chr7A_494 CTATACAGATGGAGATCAGAAGTAAAATGTTGACAAAATTATCATTTTCA chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---S-SSSS----------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ---------------------AAACTGATCTACCCAGGACTCAAGGGAGG chr7D_1_TraesCS7D01G002900 ---------------------AAACTGATCTACCCAGGACTCAAGGGAGG chr7A_494 CTAAATCTTAGGAGGGACTCGAAAGTGATCTACCCAGGACTTAA-GGAGT chr4A_494 ------------------------------------------AAGGGAGT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------------------------S----------------S-------S forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 ------------------------------TACCCAGGACTCAAGGGAGG reverse_4724 -------------------------------------------------- forward_3554 ----------------------------------CAGGACTCAAGGGAGG reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGACAAGATTATCTTCATTTCACACCTTGTATTATTTGTTTGATTTTGGA chr7D_1_TraesCS7D01G002900 TGACAAGATTATCTTCATTTCACACCTTGTATTATTTGTTTGATTTTGGA chr7A_494 TGATGAGATTATCTTCATTTCACACCTTGCATCATTTGTTTGATTTTGGA chr4A_494 TGATAAGATTATCTTCATTTCACACCTTGTATCATTTGTTTGATTTTGGA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---S----------------------------S----------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 TGAC---------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGACCACATATTGAGTTTCCAAGCTTGATATTATATCAAAGAGATGCATG chr7D_1_TraesCS7D01G002900 TGACCACATATTGAGTTTCCAAGCTTGATATTATATCAAAGAGATGCATG chr7A_494 CAT-CACATATTCAGTTTCCAAGCTTGAT----------------GCATG chr4A_494 CAT-CACATATTCAGTTTCCAAGCTTGAT----------------GCATG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SSSS--------S----------------SSSSSSSSSSSSSSSS----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTATTTGAGAATTAAATTATAAGTTGTGGAATAGTTTCCGTAATGTAGAG chr7D_1_TraesCS7D01G002900 TTATTTGAGAATTAAATTATAAGTTGTGGAATAGTTTCCGTAATGTAGAG chr7A_494 TTATTTGAGAATTACATTATAAGTTGTGGAATAGTTTCCGTAATGTAGAG chr4A_494 TTATTTGAGAATTACATTATGAGTTGTGGAATAGTTTCCCTAATGTAGAG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------S----------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AACGTCAATTATTTACCCTTTTTTT--TATAATTTGTTACTTGGGATGCT chr7D_1_TraesCS7D01G002900 AACGTCAATTATTTACCCTTTTTTT--TATAATTTGTTACTTGGGATGCT chr7A_494 AACGTCATTTCTTTACCCTTTTTTTTATATAATTTGTTACTTGGGATGCA chr4A_494 AACGTCATTTCTTTACC-TTTTTTTTATATAATTTGTTACTTGGGATGCA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------S--S--------------------------------------S forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AATTTT--TTTGGCATGGTGTTTAATTAGCTTGCAGC------------- chr7D_1_TraesCS7D01G002900 AATTTT--TTTGGCATGGTGTTTAATTAGCTTGCAGC------------- chr7A_494 AATTTTCTTCTGGCAATGTGTTTAATTAGCTTGCAGCCTTGGACCTTTGA chr4A_494 AAATTTCTTTTGGCATGGTGTTTAATTAGCTTGCAGCCTTGGACCTTTGA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 G-AAAAATACATACATTAACCATGCAGTCTGTAT--TTGTGACAGGGTAT chr7D_1_TraesCS7D01G002900 G-AAAAATACATACATTAACCATGCAGTCTGTAT--TTGTGACAGGGTAT chr7A_494 GAAAAAATACATACATTAACCATGCAATCTGTGTAATTGTCACAGGGTAT chr4A_494 G-AAAAATACATACATTAACCATGCAATCTGTGTAATTGTCACAGGGTAT chr7A_1114 --------CTATATTTTAACCATGCAGTCTGTAT--TTGTCACAGGGTAT chr4A_1114 -----AATCTATATTTTAACCATGCAGTCTGTAT--TTGTCACAGGGTAT chr7D_1115 -----AGTCTATACTTTAACCATGCAGTCTGTAT--TTGTCACAGGGTAT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTGCACAATGATAAACACGCTTCAGACAGAGCGCTTACCTAATATCAGGG chr7D_1_TraesCS7D01G002900 CTGCACAATGATAAACACGCTTCAGACAGAGCGCTTACCTAATATCAGGG chr7A_494 CTGCTGGATGATAAACATAATTCAGAAGGAGCATTTACCTAATATCAGGG chr4A_494 CTGCTGGATGATAAACATAATTCAGAAGGAGCATTTACCTAATATCAGGG chr7A_1114 CTGCCTGATGATAACTGTGCTTCAGATGGCGCGCTTACCTAATATCAGGG chr4A_1114 CTGCCTGATGATAACTGTGCTTCAGATGGCGCACTTACCTAATATCAGGG chr7D_1115 CTGCCTGATGATAACTGTGCTTCAGATGGCGCGCTTACCTAATATCAGGG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----SSS----------S--------SS---------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TATTAGCATGTCTATTTG------CAGTAGTCCACTGACCGTCGTCGGAT chr7D_1_TraesCS7D01G002900 TATTAGCATGTCTATTTG------CAGTAGTCCACTGACCGTCGTCGGAT chr7A_494 TATTAGCATGTCTATTTG------CTGTAGTCAACTGATTGTCGTCGTAT chr4A_494 TATTAGCATGTCTATTTG------CTGTAGTCAACTGATTGTCGTTGGAT chr7A_1114 TATTGGCATGTCTATTTG------CAGTAGTCCTAACAGTTTTACGACTC chr4A_1114 TATTGGCATGTCTATTTGTACTTGCAGTAGTCCTAACAGTTTTACGACTC chr7D_1115 TATTGGCATGTCTATTTG------CAGTAGTCCTAACAGTTTTACGACTC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------------------------SS---------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CCTACTTGT--AGTAGTATCTAATACTGTATCTTTGCAGGTTGCATCAGT chr7D_1_TraesCS7D01G002900 CCTACTTGT--AGTAGTATCTAATACTGTATCTTTGCAGGTTGCATCAGT chr7A_494 CCTGCTTGT--AGTAATATCTAAGACTCTATCTTTGCAGGTTGCATCGGT chr4A_494 CCTGCTTGT--AGTAATATCTAAGACTCTATCTTTGCAGGTTGCATCGGT chr7A_1114 CTGCATGTATCAGAAGTATCTAAGGCTGTATCTTTGCAGGTTGCATCAGC chr4A_1114 CTACATGTATCAGAAGTATCTAAGGCTGTATCTTTGCAGGTTGCATCAGC chr7D_1115 CTGCGTGTATCAGAAGTATCTAAGGCTGTATCTTTGCAGGTTGCATCAGC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---S-------------------S-------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCTTCTTAGTGCTGCATTTGTGTATGACATCTTCTGGGTCTTCATTTCAC chr7D_1_TraesCS7D01G002900 TCTTCTTAGTGCTGCATTTGTGTATGACATCTTCTGGGTCTTCATTTCAC chr7A_494 TCTTCTTGGTGGTGCATTTGTGTATGACATCTTCTGGGTCTTCATTTCAC chr4A_494 TCTCCTTGGTGCTTCATTTGTGTATGACATCTTCTGGGTCTTCATTTCAC chr7A_1114 TCTTCTTAGTGCTGCATTTGTGTATGACATCTTCTGGGTCTTCATTTCGC chr4A_1114 TCTTCTTAGTGCTGCATTTGTGTATGACATCTTCTGGGTCTTCATTTCGC chr7D_1115 TCTTCTTAGTGCTGCATTTGTGTATGACATCTTCTGGGTCTTCATTTCGC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTCTTGTATTCCATGAGAGTGTTATGATTGCAGTAAGTGCATTCTTTACC chr7D_1_TraesCS7D01G002900 CTCTTGTATTCCATGAGAGTGTTATGATTGCAGTAAGTGCATTCTTTACC chr7A_494 CTCTTATATTCCATGAGAGTGTTATGCTTGCAGTAAGTGCAATCTTGATC chr4A_494 CTCTTATATTCCATGAGAGTGTTATGTTTGCAGTAACTGCATTCTTGACC chr7A_1114 CTCTTATATTCCATGAGAGTGTTATGATTGCAGTAAGTGCATTCTTGACC chr4A_1114 CTCTTATATTCCATGAGAGTGTTATGATTGCAGTAAGTGCATTCTTGACC chr7D_1115 CTCTTATATTCCATGAGAGTGTTATGATTGCAGTAAGTGCATTCTTGACC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----S----------------------------------------S--- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTT-ACATTTACATCAAGACTTACTATCAGCTATGCTTTAGTTATACACA chr7D_1_TraesCS7D01G002900 TTT-ACATTTACATCAAGACTTACTATCAGCTATGCTTTAGTTATACACA chr7A_494 TTT-ACATTTACATCAATACTTACTATCAGCCATGCTTTAGTTCTGTGTA chr4A_494 TTT-ACATTTACATCAATACTTACTATCAGCCATGCTTTAGTTCTACATA chr7A_1114 TTTTACATTTACATCTAGAGTTATTACCAGTTACGCTCTAGTTTTACAGG chr4A_1114 TTT-ACATTTACATCTGGAGTTATTATCAGTTACGCTCTAGTTTTACAGG chr7D_1115 TTT-ACATTTACATCTAGAGTTATTACCTGTTACGCTCTAGTTTTACAGG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------S----S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTAATTTGTGCAATAGATTTTCTAGTTAAATCAATCAGTGGAATACTCTT chr7D_1_TraesCS7D01G002900 TTAATTTGTGCAATAGATTTTCTAGTTAAATCAATCAGTGGAATACTCTT chr7A_494 TTAATTTGCACGATAGATTTTCTAGTTAAATCAATCAGTGGAATAGTCCT chr4A_494 TTAATTTGCACGGTAGATTTTCTAGTTAAATCAATCAGTGGAATGGTTTT chr7A_1114 TTAATTTACACAGTAGATTTTCTAGTTAAAGCAAT----GGATTAGGCTT chr4A_1114 TTAATTTACACAGCAGATTTTCTAGTTAAATCAAT----GGATTAGGCTT chr7D_1115 TTAATTTAGACGGTAGATTTTCTAGTTAAATCAAT----GGATTGGGCTT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------SS-----------------------------------S---- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GCTTCTTCGCAAAAAAG----------AAAAG---TAGTCTTGCAACTGC chr7D_1_TraesCS7D01G002900 GCTTCTTCGCAAAAAAG----------AAAAG---TAGTCTTGCAACTGC chr7A_494 GCTTCTTCGCAAAAAAG----------AAAAGGAATAGTCTTGCAACTGC chr4A_494 GCTTCTTCGCAAAAAAG----------AAAAGGAATAGTCTTGCAACTGC chr7A_1114 GTTTATCCTCATCAAAAAGATAAATAAAAATGGAATAGTCTTGCAACCAC chr4A_1114 GTTTCTCCTCATCAAAAAGATAAATAAAAATGGAATAGTCTTGCAACCAC chr7D_1115 GTTTCTCCTCATCAAAAAGATAAACAAAAATGGAATAGTCTTGCAACCAC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATGATGAAACCATTTTTAGAAAATAAGATATACCATTTCCCCCAAAAAGG chr7D_1_TraesCS7D01G002900 ATGATGAAACCATTTTTAGAAAATAAGATATACCATTTCCCCCAAAAAGG chr7A_494 ATGATGAAACCATTTTTAGAAAATAAGATATGCCATTTCCCCCAAAAAGG chr4A_494 ATGATGAAACCATTTTTAGAAAATAGGATATGACATTTCCCCCAAAAACG chr7A_1114 ATGACGAAGCCATTTAAGGTAGGTGTACTTTGAGG-GGGC---------- chr4A_1114 ATGATGAAGCCATTTAAGAAAGGTATACTTTGAGG-GG-C---------- chr7D_1115 ATGATGAAGCCATTTAAGAAAGGTATACTTTGAGGGGG-C---------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------S------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AACACTCTTGCTTCTTCAC-AAAAAAAAGGCATTTGGAAGGTTGTAAAAA chr7D_1_TraesCS7D01G002900 AACACTCTTGCTTCTTCAC-AAAAAAAAGGCATTTGGAAGGTTGTAAAAA chr7A_494 AATACTCTTGCTTCTTCAC-AAA-AAAAGGCATCTGGAGGTTGT--AAAA chr4A_494 AATACTCTTGCTTCTTCACAAAA-AAAAGGCATCTGGAGGTTGT--AAAA chr7A_1114 --------------------------AAGGATTTGGTAGGTTGT--AAAA chr4A_1114 --------------------------AAGGATTTGGTAGGTTGT--AAAA chr7D_1115 --------------------------AAGGATTTGGTAGGTTGT--AAAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S--------------------S--------------S-S-SSSS---- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TAAAGGGAAGGACAGGACAGAATCCACAAGGGTTGCCTTCTTAAATACCT chr7D_1_TraesCS7D01G002900 TAAAGGGAAGGACAGGACAGAATCCACAAGGGTTGCCTTCTTAAATACCT chr7A_494 TAAAGAGAAGGA--------------------TTCACTTCTTAAATACCT chr4A_494 TAAAGAGAAGGACAGGACAGAATCCACAAGGGTTGACTTCTTAAATACCT chr7A_1114 TCGAGAGGAGGACAGGACAGAATCCACTAGGGTTACTTGCTTAAATACCT chr4A_1114 TCGAGAGAAGGACAGGACAGAATCCACAAGGGTTACTTGCTTAAATACCT chr7D_1115 TTGAGAGAAGGACAGGACAGAATCCACAAGGGTTACTTGCTTAAATACCT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----S-------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTAGAATATGAGAGAACTGGTAGCAGCCTGTCTTGAAACTGAGTAAATTG chr7D_1_TraesCS7D01G002900 TTAGAATATGAGAGAACTGGTAGCAGCCTGTCTTGAAACTGAGTAAATTG chr7A_494 TTGGAATATGAGAGAATTGGTAGCAGCTTGTCTTGAAACTGAGTGAATTG chr4A_494 TCAGAATGTGGGAGAATTGGTAGCAGCCTGTCTTGAAACTGAGTGAATTG chr7A_1114 TCAGAAT-TAAGAGAATAATGAGTAGCCTATCTTGAAACTGAGTGGACTG chr4A_1114 TCAGAATATAAGAGAATAATCAGTAGCCTATCTTGAAACTGAGTGGATTG chr7D_1115 TCAGAATATAAGAGAATAATCAGTAGCCTATCTTGAAACTGAGTGGATTG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----------------S---------------------------S----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 ----------------CTGGTAGCAGCCTGTCTTGA-------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTAAAATATTCAGTGTTATGATCTAATTTGGTTCTCTTATGACCCGTATA chr7D_1_TraesCS7D01G002900 TTAAAATATTCAGTGTTATGATCTAATTTGGTTCTCTTATGACCCGTATA chr7A_494 TTAAAATATTCAGTGTTATGATCTAATCTGGTTCTCTTATGACCCGTATA chr4A_494 TTAAAATATTCAGTGTTATGATCTAATTTGGTTCTCTTATGACCTGTATA chr7A_1114 TTAGAATATTCAGTGTTATGATCTAATTTGGTGCTCTCATGACCCATATA chr4A_1114 TTAGAATATTCAGTGTTATGATCTAATTTGGTGCTCTCATGACCCGTATA chr7D_1115 TTAGAATATTCAGTGTTATGATCTAATTTGGTGCTTTCATGACCCATATA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AAA-CTGATATATTTTGGAGGCAAATGTTCAGACTTTAAACTGTAGTGAA chr7D_1_TraesCS7D01G002900 AAA-CTGATATATTTTGGAGGCAAATGTTCAGACTTTAAACTGTAGTGAA chr7A_494 AAAATTGATATGTTTAGGAGGCAAATGTTCGGACTTGAAAC--TAGTGAA chr4A_494 AAA-TTGATATATTTTGGAGGCAAATGTTCAGACTTGAAACTGTAGTAAA chr7A_1114 AAA-TTGATGTATATTGGCAGCAAATGTTCAGACTCGAAACTGTAGTGAA chr4A_1114 AAA-TTGATATATTTTGGCAGCAACTGTTCAGACTTGAAACTATAGTGAA chr7D_1115 AAT-TTGATATATTTTGGCAGCAACT-TTCAGACTTGAAACTGTAGTGAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----S-------------------------------S------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATGTTA------------TTTTTTGTGGTTATAATTTGAAGTTAAAT-AA chr7D_1_TraesCS7D01G002900 ATGTTA------------TTTTTTGTGGTTATAATTTGAAGTTAAAT-AA chr7A_494 ATGTTA------------TTTTTTGTGGTTATAATTTGAAACTAAATAAA chr4A_494 ATGTTA-------------TTTTTGTGGTTATAATTTGAAACTAAATAAA chr7A_1114 ATGTTTAGCACATGTTCTTTTTAATGGCTTATAATTTGACGTTAAACAAA chr4A_1114 ATGTTTAGAACATGTTCTTTTTTGTGGTTTATAATTTGATGTTATTCAAA chr7D_1115 ATGTTTAGAACATGCTCTTTTTTGTGGTTTATAATTTGACGTTAAACAAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGCATTGTCCAGAAAATGCTTATG--TTTAGTAGCCTATCTTATTCTCTT chr7D_1_TraesCS7D01G002900 TGCATTGTCCAGAAAATGCTTATG--TTTAGTAGCCTATCTTATTCTCTT chr7A_494 TGCATTGTCCAGCAAATGCTTATG--TTTAGTAACCTATCTTATTCTCTT chr4A_494 TGCATTGTCCAGCAAATGCTTATG--TTTAGTAACCTATCTTATTCTCTT chr7A_1114 TACATTATCCAGCAAAAGCTCATGTTTTTAGTAGCCTATCTTATTCTATT chr4A_1114 TAAATTTTCAAGCAAATGATCATG--TTTAGTGGCCTATCTTATTCTATT chr7D_1115 TACATTATCCTGCAAGCGCTCATG--TTTAGTAGGCTATCT-ATTCTATT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------------S------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTGATTGGG---------------TTTTTGTTACTTACCATTTTATGAAA chr7D_1_TraesCS7D01G002900 GTGATTGGG---------------TTTTTGTTACTTACCATTTTATGAAA chr7A_494 ATGTGCTGTGACTTGTGATTGTTTTTTTTTT-ACTTACCATCTTATGAAA chr4A_494 ATGTGCTGTGACTTGTGATTGTTTTTTTTTTTACTTACCATCTTATGAAA chr7A_1114 ATGTGCTGTGACTTGTGATTGAA---------AATTTCATTTTTATTAAA chr4A_1114 GTGTGCTGTGACTTGTGATTGAG---------ATTTTCATTTTATT--AA chr7D_1115 ATGTGCTGTGACTTGTGATTGAG---------ATTTTCATT-TTATTAAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---SSSS-S--------------------S-------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GCTCCCAGGTTGCAAGTGGTGGCGTCTCAGGGGAAGCGATTCCGATGCTC chr7D_1_TraesCS7D01G002900 GCTCCCAGGTTGCAAGTGGTGGCGTCTCAGGGGAAGCGATTCCGATGCTC chr7A_494 GCTCCCAGGTTGCAAGTGGTG-CAGCTCAGGGGAAGTGATTCCGATGCTC chr4A_494 GCTCCCAGGTTGCAAGTGGTGGCAGCTCAGGGGAAGTGATTCCGATGCTC chr7A_1114 ACCTTCAGGTTGCTAGTGGTGACAGCTCAGGGGAAGCAATTCCGATGCTC chr4A_1114 ACCTTCAGGTTGCTAGTGGAGACAGCTCAGGGGAAGCAATTCCGATGCTC chr7D_1115 ACCTTCAGGTTGCTAGTGGTGACAGCTCAGGGGAAGCAATTCCGATGCTC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------SS------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -----------------------GTCTCAGGGGAAGCGATTCC------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTAAGAATACCTCATTTCTTTGATCCATTGGGTGGCTATGCCATTTTATG chr7D_1_TraesCS7D01G002900 CTAAGAATACCTCATTTCTTTGATCCATTGGGTGGCTATGCCATTTTATG chr7A_494 CTAAGAATACCTCATTTCTTTGATCCATTGGGTGGATATGCCATGTTAGG chr4A_494 CTAAGAATACCTCGTTTCTTTGATCCATTGGGTGGATACGCCATGTTAGG chr7A_1114 CTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGATAGG chr4A_1114 CTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGATAGG chr7D_1115 CTAAGAATACCTCGTTTCTTTGATCCATGGGGTGGCTATGACATGATAGG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------------------------------S---S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTTTGGTGATATTATTTACCCTGGACAGCTCATTGCATTCAGCTACAGGT chr7D_1_TraesCS7D01G002900 CTTTGGTGATATTATTTACCCTGGACAGCTCATTGCATTCAGCTACAGGT chr7A_494 CTTTGGTGATATTATTTCCCCTGGACATCTCATCGCATTCAGCTACAGGT chr4A_494 CTTTGGTGATATTATTTCCCCTGGACAGCTCATCGCATTCAGCTACAGGT chr7A_1114 CTTTGGTGATATTATTTTCCCTGGATTGCTCGTTGCATTCAGCTACAGGT chr4A_1114 CTTTGGCGATATTATCTTCCCTGGATTGCTCGTTGCATTCAGCTACAGGT chr7D_1115 CTTTGGTGATATTATTTTCCCTGGATTGCTCGTTGCATTCAGCTACAGGT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------S-------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ACTCTATG-C-------------AATGCTGCAATATATGTTTGTAGCTTT chr7D_1_TraesCS7D01G002900 ACTCTATG-C-------------AATGCTGCAATATATGTTTGTAGCTTT chr7A_494 ACTCTATG-C-------------AATGCTGCAATATATGTTTATGGGTTT chr4A_494 ACTCTATTAC-------------AATGCTGCAATATATGTTTATGGGTTT chr7A_1114 ACTCTATG-C-------------A-------------------------- chr4A_1114 ATTCTACG-CGATGTTGCAATATA-------------------------- chr7D_1115 ACTCTATG-CG------------A-------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------------------------------------------S-S-S--- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCTTCTAATCTGTTACTCCGTTAGTTCACTAATGGGTAGACATAGAAGAA chr7D_1_TraesCS7D01G002900 TCTTCTAATCTGTTACTCCGTTAGTTCACTAATGGGTAGACATAGAAGAA chr7A_494 TCATCTAATCTGTAACT-CGTTAGTTCACTAATGGGTAGACATAGAAGAA chr4A_494 TCATCTAATCTGTTACTCCGTTAGTTCACTAATGGGTAGACATAGAAGAA chr7A_1114 ----------TGTTACTCCGTTAGTTCACTAATGGGTATACACATAGAAG chr4A_1114 ----------TGTTGCTCCGTTAGTTCACTAATGGGTATACATAGAAGAA chr7D_1115 ----------TGTTACTCCGTTAGTTCACTAATGGGTATACATTGAAGAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S----------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ACATAATAAAATACTGCCTGGTAGTCTGGTACT----------------- chr7D_1_TraesCS7D01G002900 ACATAATAAAATACTGCCTGGTAGTCTGGTACT----------------- chr7A_494 ACATACTTAAATATTGCCTGCTAGTCTGGTA------------------- chr4A_494 ACATACTTAAATACTGCCTGGTAGTCTGGTACTCCCTCCGTTTCTTTTTA chr7A_1114 TACT--TTAAATACTATCTGGTAGTCTGGTC------------------- chr4A_1114 ACATACTTAAATACTGTCCGGTAGTCTGGTC------------------- chr7D_1115 ACATACTTAAATACTATCTGGTAGTCTGGTA------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----S-S------------------------------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 GTCTGCATATAAAATTTGTCTAAAGTCAAACATAGTAAAGTTTGACTAAG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 ATTATAGAAAAAAATATAAACATTCACAATATAAAATCGATGCCATTAGA chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 TGCATCATTGAATCAACTTCCATATTGTATATCTCATGTATTATAGATGT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 TGATAATTTTGTATATAAATTTGGTCAAACTTTATGAAGTTTGACTTAAG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ------------------------------------------ATTCGTGC chr7D_1_TraesCS7D01G002900 ------------------------------------------ATTCGTGC chr7A_494 -------------------------------------GTACCATTCATGC chr4A_494 ACAAATCTTATATGCGCAGTACAAAGAAACGGAGGGAGTACCATTCATGC chr7A_1114 ----------------------------------------CCATTCTTGC chr4A_1114 ----------------------------------------CCAT-CATGC chr7D_1115 ----------------------------------------CCATTCTTGC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----------------------------------------------S--- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 ------------------------------------------------GC reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TAAACGCAATGAAGGTCCCAAGA--CACACACTATTTGTTGTGAACCTTT chr7D_1_TraesCS7D01G002900 TAAACGCAATGAAGGTCCCAAGA--CACACACTATTTGTTGTGAACCTTT chr7A_494 TAAACGCAATGAAGGTCTCAAGA--AACACACTA---------------- chr4A_494 TAAACGCAATGAAGGTCTCAAGA--AACACACTA---------------- chr7A_1114 TAAACGCGATGAAGGCCTTAAGA--CTCACACTTTTTGTTCTGAACCTTC chr4A_1114 TAAATGCGATGAAGGCCTTAAGA--CACAC--TATTTGTTGTGAACCTTC chr7D_1115 TAATCGTGATGAAGGCCTTAAGAGGCACAC--TTTTTGTTGTGAACCTTC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------S-------------------------------S forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 TAAACGCAATGAAGGTCC-------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTTCAGGATAACTAACTACCATGCT-GAAGATAGGTTGAGATGTAGAATA chr7D_1_TraesCS7D01G002900 GTTCAGGATAACTAACTACCATGCT-GAAGATAGGTTGAGATGTAGAATA chr7A_494 --------------ACTACCGTGCT-GAAGATAGGTTGAGATGTAGAATA chr4A_494 --------------ACTACCGTGCT-GAAGATAGGTTGAGATGTAGAATA chr7A_1114 ATTTGGGATAACTAACTACCATGCTGGAAGATAGGTTGAGATGGCGAATA chr4A_1114 ATTAGGGATAACTAACTACCATGCTGGAAGATAGGTTGAGGTGGTGAATA chr7D_1115 ATTCGGGATAACTAACTACCATGCTGGAAGATAGGTTGAGGTGGTGGACA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S---S--------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTTGGGAGATACTA------------------------------------ chr7D_1_TraesCS7D01G002900 TTTGGGAGATACTA------------------------------------ chr7A_494 TTTGGGAGATACTA------------------------------------ chr4A_494 TTTGGGAGATACTA------------------------------------ chr7A_1114 TTGGGGAGATAATAGATCAATTCTTCTTGCTAGGTTGAGATTGAGAATAT chr4A_1114 TTTGGGAGATAATAGACCGATTCTTCTTGCTAGGTTGAGATTGAGAATAT chr7D_1115 TTTGGGAGATAATAGATCGATTCTTCTTGCTAGGTTGAGATTGAGAATAT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ------------AGATCGATTCTTCCTGCTTATCTCAAACATAGATACAT chr7D_1_TraesCS7D01G002900 ------------AGATCGATTCTTCCTGCTTATCTCAAACATAGATACAT chr7A_494 ------------AGATCGATTCTTCTTGCTTATCTCAAACATAGATACAT chr4A_494 ------------AGATCGATTCTTCCTGCTTATCTCAAACATAGATACAT chr7A_1114 TAGGGAGACAATAGACCGATTCTTCTTGCTTATCTTGGACAT-------- chr4A_1114 TTGGGAGATAATAGACCGATTCTTCTTGCTTATCTCAAACAT-------- chr7D_1115 TTGGGAGATAATAGATCAATTCTTCTTGCTTATCTTGGACAT-------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATCATCTT--TATAGTGAATGTTTGGACCCTTGATGTTTCCTAGCACAAT chr7D_1_TraesCS7D01G002900 ATCATCTT--TATAGTGAATGTTTGGACCCTTGATGTTTCCTAGCACAAT chr7A_494 ATCATCTTCATATAGTGAATGCTTGGACCCTTGTTGTTTTCTAGCACAAT chr4A_494 ATCATCTTCATATAGTGAATGCTTGGACCCTTGTTGTCTCCTAGCACAAT chr7A_1114 -----CTTCATATGGTGAATGCTTGGGCCCTTGACGTTTCGTAGCACAAT chr4A_1114 -----CTTCACGTAGTGAACGCTTGGGCCCTTC---TTTCCTAGCACACT chr7D_1115 -----CGTCATATAGTGAATGCTTGGGCCCTTGACGTTTCGTAGCACACT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------------S---------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AAGAACTCTGTT-GTCTCAGAGGTTCATGCCATTTGTTAATGATACATCA chr7D_1_TraesCS7D01G002900 AAGAACTCTGTT-GTCTCAGAGGTTCATGCCATTTGTTAATGATACATCA chr7A_494 AAGAACTCTGTT-GTCTCAGAGGTCCACGCCATTTGTTAATGATACATCA chr4A_494 AAGAACTCTGTT-GTCTCAGAGGTCCACGCCATTTGTTAATGATAGATCA chr7A_1114 AAGAACTCTGTTTGTATGAGAGGTTTACGCCATTTGTTAATGATACATCA chr4A_1114 AAGAACTCTGTT-CTCTGAGAGGTTTACGTCATTTGTGAATGATACAAAA chr7D_1115 AAGAACTCTGTTTGTATGAGAGGTTTACGCCATTTGTTAATCATACATCA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------------------S---------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCTCTTTGGTATATGACGCAGATTTGACAGGGCAGGCAAAAAAGGTATCT chr7D_1_TraesCS7D01G002900 TCTCTTTGGTATATGACGCAGATTTGACAGGGCAGGCAAAAAAGGTATCT chr7A_494 TCACTTTGGTATACGGCGCAGATTTGACAGGGCAGCCAAAAAAGGTATCT chr4A_494 TCACTTTGGTATACGACGCAGATTTGACAGGGCAGCCAAAAAAGGTATCA chr7A_1114 TCACTTTGCTATACGATGCAGATTTGACAGGGCAGGCAAAAAGGGTATCT chr4A_1114 TCACTTTGGTATACGTTTCAGATTTGATAGGGCAGGCAAAAAGGGTATCT chr7D_1115 TCACTTTGCTATACGATGCAGATTTGACAGGGCAGGCAAAAAGGGTATCT chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S----------S------------------------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------TGACGCAGATTTGACAGGGC----------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGAATGGATATTTTCTATGGCTGACCGTGGGATATGTTGTTGGTAAGCA- chr7D_1_TraesCS7D01G002900 TGAATGGATATTTTCTATGGCTGACCGTGGGATATGTTGTTGGTAAGCA- chr7A_494 TCAATGGATATTTTCTATGGCTGACCATGGGATATGTTGTTGGTAAGCA- chr4A_494 TGAATGGATATTTTTTATGGCTGACCGTGGGATATGTTGTCGGTAAGCA- chr7A_1114 TGAATGGATATTTTCTATGGCTGACCGTGGGATATGCTGTCGGTAAGTGT chr4A_1114 TGAATGGATATTTTCTGTGGCTGACTGTGGGATATGCTGTCGGTAAGTGT chr7D_1115 TGAATGGATATTTTCTGTGGCTGACCGTGGGATATGCTGTCGGTAAGTT- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -TTTGATACATCTTGTTCTCTATTATATTATATTTGTGTTGATCAGTTAG chr7D_1_TraesCS7D01G002900 -TTTGATACATCTTGTTCTCTATTATATTATATTTGTGTTGATCAGTTAG chr7A_494 -TTTGATACATCTTGTTTTCTATTATA-----TTTGTGTTGACCAGTTAG chr4A_494 -TTTGATACATCTTGTTCTCTATGT------------------------- chr7A_1114 GCTTGACTCATCTTGTTCTGTA---------------------------- chr4A_1114 GCTCGACTCGTCTTGTTCTGTA---------------------------- chr7D_1115 -CTTGACTCATCTTGTTCTGCA---------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------------------SSSSS----------S------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATGTTAGCGCTCTATGTTGTGT--CTGTTGTGGTATTGCTTATGTTCATG chr7D_1_TraesCS7D01G002900 ATGTTAGCGCTCTATGTTGTGT--CTGTTGTGGTATTGCTTATGTTCATG chr7A_494 ATGTTAGCGCTCTATGTTGTGTGTCTGTTGTGGTATTGCTTATGTTCATG chr4A_494 -------------------TGTGTCTGTTGTGGTATTGCTTATGTCCATG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GGCTGGTTACGCAATTTTCTTTAACAGTTCATTTTAGTTGTGAATTTCAT chr7D_1_TraesCS7D01G002900 GGCTGGTTACGCAATTTTCTTTAACAGTTCATTTTAGTTGTGAATTTCAT chr7A_494 GGCTGGTTACGCAATTTCCGTTAACAGTTCATTTTAGTTGTGAACTTCAC chr4A_494 GGCTGGTTACGCAATTTTCTTTAACAGTTCATTTTAGTTGTGAACTTCAT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------------------------------S----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AGTGGCCCATCATATTTGATTATTTGAGTACTAGCAAAATAGTGGACTTT chr7D_1_TraesCS7D01G002900 AGTGGCCCATCATATTTGATTATTTGAGTACTAGCAAAATAGTGGACTTT chr7A_494 AGTGGCCCGTCATATTTGATTATTTGGGTACCAGCAAAATAGTGGACTTT chr4A_494 AGTGGCCCGTCATATTTGATTATTTGGGTACTAGCAAATTAGTGGACTTT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------S-----------------S----------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GACAAGTAGCCATAGTCTCCAGAACTATTTTTTAGCGCAGTTCTAAATTT chr7D_1_TraesCS7D01G002900 GACAAGTAGCCATAGTCTCCAGAACTATTTTTTAGCGCAGTTCTAAATTT chr7A_494 GATAACT---------------AACCATTTTTTAGGACAGTTCTAATTTT chr4A_494 GATAAGTGGCCATAGTCTCCAGAACTATTTTTTAGTGCAGTTCTAAATTT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --S----S---------------------------S-------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTGGCATGAGCACCGAGTCTAGAGCCGAGAGGCTTAACAAGCACTGCACT chr7D_1_TraesCS7D01G002900 TTGGCATGAGCACCGAGTCTAGAGCCGAGAGGCTTAACAAGCACTGCACT chr7A_494 TTGGCACGAACACCGAGTCTATAACCGATAGGCTTAACAAGCACTGCACT chr4A_494 TTGGCATGAGTATCGAGTCTAGAACCGATAGGCTTAACAAGCACTGGACT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------S----S--------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATAAAAGGGCTCAATATATTCAAGCTGTACATAGTACCGGCATTGCTGTT chr7D_1_TraesCS7D01G002900 ATAAAAGGGCTCAATATATTCAAGCTGTACATAGTACCGGCATTGCTGTT chr7A_494 ATAAAAGGGCTCAGTGTATTCAAGCAGTACATAGTACGGCACTGCTG--- chr4A_494 ATATAAGGGCTCAATGTAATCAAGCTGTACATAGTACCGGCATT------ chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------------S----------------------------SSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATTGTTATGGCATCTAGGAGCACATGGTGGTGGCTGCC--TGACTGATTG chr7D_1_TraesCS7D01G002900 ATTGTTATGGCATCTAGGAGCACATGGTGGTGGCTGCC--TGACTGATTG chr7A_494 -TTGTTATGGCATCTAGGCGCACATGGTGGTGACTGCCTGTGACTGATTG chr4A_494 -------------------GCACATGGTGGTGACTGCCTTTGACTGATTG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S-----------------S-------------S----------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------CTAGGAGCACATGGTGGTGG----------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTTGTTTCCATTTTCTTGTTCTGCGTTCTGTTCTGCCTGGAAGTTACTGT chr7D_1_TraesCS7D01G002900 GTTGTTTCCATTTTCTTGTTCTGCGTTCTGTTCTGCCTGGAAGTTACTGT chr7A_494 GTTGTTTCCATTTTCTTGCTCCGCGTTCTGTTCTGCCTGGAAGTTACTGT chr4A_494 GCTGTTTCCATTTTCTTGTTCTGCATTCTGTTCTGCCTGGAAGTTACTGT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTTTCTTTGTCTTCAGGCAATAGATATACATATTTTTCTTAGTATAACTC chr7D_1_TraesCS7D01G002900 CTTTCTTTGTCTTCAGGCAATAGATATACATATTTTTCTTAGTATAACTC chr7A_494 CTTTCTTTGTCTTCAGGCAATAGATATACGTATTTTTCTTACTATAACTC chr4A_494 CTTTCTTTGTCTTCAGGCAATAGATATACATATTTTTCTTACTATAACTC chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------------------------S-------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGTAAACCGCAGACTGCAGCGTAATCCGAATTCTTGTGTTTGTTAACACA chr7D_1_TraesCS7D01G002900 TGTAAACCGCAGACTGCAGCGTAATCCGAATTCTTGTGTTTGTTAACACA chr7A_494 TGTAAACCGCAGACTCCGGCGTAATTTGAAATCCTGTGTTTGTTAACACA chr4A_494 TGTAAACTGCAGACTGTGGCGTAATCTGAAAGCCTGTGTTTGTTAACACA chr7A_1114 ----------------------------------------------GATA chr4A_1114 ----------------------------------------------CACA chr7D_1115 ----------------------------------------------CACA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------S--------S---S--S---------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATTCATTGCTT---------------CGTAGTGCAGAACCCAGATCGTCA chr7D_1_TraesCS7D01G002900 ATTCATTGCTT---------------CGTAGTGCAGAACCCAGATCGTCA chr7A_494 ATTCATTGCTT---------------TGTAGTGCAGAACCCAGATTTTCA chr4A_494 ATTCATTGCTT---------------TGCAGTGCAGAACCCAGATTTTCA chr7A_1114 GTTCATTGTTTGTAGGAAGCAGTACCTCTTGTGCAGATCTCACATTTTCA chr4A_1114 GTTCATTGTTTGTAGCAAGCAGTACCTTTTGTGCAGAGCTCGCATTTTCA chr7D_1115 GTTCATTGTTTGTAGCAAGCAGTACCTCCTGTGCAGAGCTCACATTTTCA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------------S------------------SS--- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -T-----TTTC------------TTTTTACCCTTGCAGGCCTTTTCCTTA chr7D_1_TraesCS7D01G002900 -T-----TTTC------------TTTTTACCCTTGCAGGCCTTTTCCTTA chr7A_494 TT-----TTTC------------CTTTTACCCTTGCAGGCCTTTTCCTTG chr4A_494 -T-----TTTC------------CTTTTACCCTTGCAGGCCTTTTCCTTG chr7A_1114 -T-----TTTC------------TTTTTCCCCTTGCAGGCCTTTTCCTTA chr4A_1114 -T-----TTTCATTTTCATCTTGTTTTTCCCCTTGCAGGACTTTTCCTTA chr7D_1115 TTTTCATTTTC------------ATTTTCCCCTTGCAGGCCTTTTCCTTA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CCTATCTTGCGTTCTTCCTAATGGATGGACATGGTCAACCGGCATTGATG chr7D_1_TraesCS7D01G002900 CCTATCTTGCGTTCTTCCTAATGGATGGACATGGTCAACCGGCATTGATG chr7A_494 CCTGTCTTGGGTTCTTCCTAATGGATGGACATGGTCAACCAGCGATGATG chr4A_494 CCTGTCTTGGGATCTTCCTAATGGATGGCCATGGTCAACCAGCGATGATG chr7A_1114 CCTATCTTGCGCTTTTCCTGATGGATGGACATGGTCAGCCGGCGCTGCTG chr4A_1114 CCTATCTTGCGCTTTTCCTGATGGATGGACATGGTCAGCCGGCGCTGCTG chr7D_1115 CCTATCTTGCGCTTTTCCTGATGGATGGACATGGTCAGCCCGCGCTGCTG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------SS----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TACCTAGTTCCATGCACCCTAGGTAAGCATATAAATTGTTCCTTTGCTGC chr7D_1_TraesCS7D01G002900 TACCTAGTTCCATGCACCCTAGGTAAGCATATAAATTGTTCCTTTGCTGC chr7A_494 TACCTAGTACCATGCACCCTAGGTAAGCATATAAATTGTTCCTTTGCTGC chr4A_494 TACCTAGTACCATGCACCCTAGGTAAGCATATAAATTGTTCCTTTGCATC chr7A_1114 TACCTAGTTCCTTGCACGTTAGGTAAGCATACAAATTGTTCCTTTTGGTG chr4A_1114 TACCTGGTTCCTTGCACGTTAGGTAAGCATACAAATTGTTCCTTCCCTCA chr7D_1115 TACCTAGTTCCTTGCACGTTAGGTAAGCATACAAATTGTTCCTTTTGGTG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTCATCTTTGCCTACTC---CCTTTTCTGCGATCAGGGCCACCGATGCAT chr7D_1_TraesCS7D01G002900 CTCATCTTTGCCTACTC---CCTTTTCTGCGATCAGGGCCACCGATGCAT chr7A_494 CTCATCTTTACCTACTC---CCTTTTACACGATCAGCGCCACCGATGCAT chr4A_494 TACAT--------------------------------------------- chr7A_1114 CCTCGTCTTATCTACTTACTCCCTTCCCTCAATCAGCGCGACTGATGCCC chr4A_1114 ATTTTAG--------TTACTCCCTTACCTCAATCAGCGCGACTGATGCCC chr7D_1115 CCTAATCTTATCTACTTACTCCCTTCCCTCGATCAGCGCGACTGATGCCC chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---------S-----------------SS-------S------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 ---------GCCTACTCCCTTTTCTGCGA--------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTATTTGCTTGTTTCCACACCAGGGCTTATTGTTGTGCTTGGCTGGATAA chr7D_1_TraesCS7D01G002900 GTATTTGCTTGTTTCCACACCAGGGCTTATTGTTGTGCTTGGCTGGATAA chr7A_494 GTATTCGCTTATTTTCACACCAGGGCTTATTGTTGTGCTTGGCTGGATAA chr4A_494 -------------------------------------------------- chr7A_1114 GTATCGTAC-ATTGTCATACCAGGGGTTATTGTGGTGCTTGGTTGGATAA chr4A_1114 GTATCATAC-ATTTTCATACCAGGGGTTATTGTGGTGCTTGGTTGGATAA chr7D_1115 GTATCATAC-ATTGTCATACCAGGGGTTATTGTGGTGCTTGGTTGGATAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----S----S---S----------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GAGGTGAACTGCCTCACTTGTGGAACTACGGAAGAAGACCGGAAAATTTA chr7D_1_TraesCS7D01G002900 GAGGTGAACTGCCTCACTTGTGGAACTACGGAAGAAGACCGGAAAATTTA chr7A_494 GAGGTGAACTGCCTCACTTGTGGAACTATGGAAGAAGACAGGAAAATTTA chr4A_494 -------------------------------------------------- chr7A_1114 GAGGCGAGCTGCCTCACTTGTGGAACTACGGAAGAAGACCAGAAAATTCA chr4A_1114 GAGGCGAACTGCCTCACTTGTGGAACTACGGAAGAAGACCGGAAAATTCA chr7D_1115 GAGGCGAACTGCCTCACTTGTGGAACTACGGAAGAAGACCAGAAAATTCA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTCGGT---GAAGTTGAAAT-GTGACGAGACAGGGTTTAAACTCGAAAGC chr7D_1_TraesCS7D01G002900 GTCGGT---GAAGTTGAAAT-GTGACGAGACAGGGTTTAAACTCGAAAGC chr7A_494 GTCGGT---GAAGTTGATAT-GTGGTCAGACAGGGTTTAAACTCAAAAGC chr4A_494 -------------------------------------------------- chr7A_1114 GTCGGCGAAGAAGTCTGAAATGTAACCTGACAGGATTATTTGTACTTGGA chr4A_1114 GTCGGC---GAAGTTTCAATTGTAATCTGACAGAGTTTGTATGCAAAAAG chr7D_1115 GTCGGC---GAAGTCTGAAATGTAACCTGACAGGATTATTTGTACTTGGA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------------S-----------------S----- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AGT------CATCCTTCGATGTAATTAATCAGTGGATCTG-ACATGATGC chr7D_1_TraesCS7D01G002900 AGT------CATCCTTCGATGTAATTAATCAGTGGATCTG-ACATGATGC chr7A_494 AGT------CATCCTTGGATCTAATTAATCAGTGGATCTG-ACATGATGC chr4A_494 -------------------------------------------------- chr7A_1114 AACCGTTGACATCCTTCGATCTAATCAGTTAATGGATCTCAACATGATGC chr4A_1114 G--CGGTGGCATCCTTCAATCTCATTAACTAATGGATCTGAACATGATGC chr7D_1115 AACCGTTGACATCCTTCGATCTAATCAGTTAATGGATCTA---------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------------------S----------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCCTTTTGTCGGGCGAACTGTGCGGCATCGAGGAGA-------------- chr7D_1_TraesCS7D01G002900 TCCTTTTGTCGGGCGAACTGTGCGGCATCGAGGAGA-------------- chr7A_494 TCCTTTGTTGCGT-GAACTGTGCGGCATCGTGGAAA-------------- chr4A_494 -------------------------------------------------- chr7A_1114 TCCATATC-CGTGAGAACTGTGCGGCTTCGAGGAAA-------------- chr4A_1114 TCCTTTTTTGGGTTGTAAAACTAGCAGTAGCCAGATTTGTGTTTGATAGC chr7D_1115 -----ATC-CGTGAGAACTGTGCGGCTTCGAGGAAA-------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------S-----S--------------------S--------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 CTTTGTCGAACTTGAAACTCAGGTTTGACATGGGAGTTCACTCTGTATCA chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 ACAACAGATAGCATATATTTTACATAAGGCTTGAGCTAATCTTATTCTTA chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 CAAAAATCATGATCTTCTGTCAGACTGGAATAATAATCATTCTCAGGACA chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 TTGGGCCACTCATGTTCAAACATGTGTCGGGATGCAAACACAATCTAAAA chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ---------------------------------------TGTTAAATTAG chr7D_1_TraesCS7D01G002900 ---------------------------------------TGTTAAATTAG chr7A_494 ---------------------------------------TGTTAAATTAG chr4A_494 -------------------------------------------------- chr7A_1114 ---------------------------------------TGTAAACTTAG chr4A_1114 AGTGATGCAAACAAAACCATTGACATCCTTCCACATCTGTGTCAAATTAG chr7D_1115 ---------------------------------------TGTAAACTTAG chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTGTAGCCAGATTTGTGTTTGATATAGGTTGTCCT-CATTGAACTTGAAA chr7D_1_TraesCS7D01G002900 CTGTAGCCAGATTTGTGTTTGATATAGGTTGTCCT-CATTGAACTTGAAA chr7A_494 CTGTAGCCAGATTTGTGTTTGATTTAGGTTGTCCT-CATTTAACTTGACA chr4A_494 -------------------------------------------------- chr7A_1114 CTGTAGCCAGATTTGTGTTTGGTATAGGTTGTACTTCGTCGACCTTGAAA chr4A_1114 CTGTAGCCACATTTGTGTTTGACATAGGTTGTC-TTCGTCGAACTGGAAA chr7D_1115 CTGTAGCCAGATTTGTGTTTGATATAGGTGTAC-TTCGTCGGCCTTGAAA chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CATGTGGGTTTAGGGATGGCAATGCGTGGGTACAGCCCCCTTCTGCCCAA chr7D_1_TraesCS7D01G002900 CATGTGGGTTTAGGGATGGCAATGCGTGGGTACAGCCCCCTTCTGCCCAA chr7A_494 CAAAAAGAGCGAGTTGTGGAGATCCAACATATCTCATCCGTTCAACCGCT chr4A_494 -------------------------------------------------- chr7A_1114 CGTGTGAGTTGA-------------------------------------- chr4A_1114 CGTGCGAGTTGGTGC----------------------------------- chr7D_1115 CGTGTGAGTTGAGG------------------------------------ chr2B_5248 ---------TTATGGATGGGTATGGGTGGGTACAACCTTCTTCTGCCCAA chr4A_5260 ---------------------ATGGGTGGGTACAACCCCCTTCTGCCCAA chr5A_5260 ---------------------ATGGGTGGGTACAGCATCCTTCTGCCCAA chr2B_5260 ---------------------ATGGGTGGGTACAACCTCCTTCTGCCCAA chrUn_5260 ---------------------ATGGGTGGGTACAACCTCCTTCTGCCCAA chrUn_5260 ---------------------ATGGGTGGGTACAACCTCCTTCTGCCCAA chrUn_5260 ---------------------ATGGGTGGGTACAACCTCCTTCTGCCCAA chrUn_5260 ---------------------ATGGGTGGGTACAACCTCCTTCTGCCCAA chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------SS----------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ACCCATACCCATAGAAAC----------------TTTCTA---------- chr7D_1_TraesCS7D01G002900 ACCCATACCCATAGAAAC----------------TTTCTA---------- chr7A_494 C------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 ACCCATACCCATAGAAAA----------------TTTCTATACCCACCCA chr4A_5260 ACCCATACCCATAGAAAC----------------TTTCTATACCCACCCA chr5A_5260 ACTCATACCCATAGAAACTTTCTATACCCACCCATTTCAA---------- chr2B_5260 ACCCATACCCATAGAAACTTTCTATACCCACCCACTTAAA---------- chrUn_5260 ACCCATACCCATAGAAACTTTCTATACCCACCCACTTAAA---------- chrUn_5260 ACCCATACCCATAGAAACTTTCTATACCCACCAACTTAAA---------- chrUn_5260 ACCCATACCCATAGAAACTTTCTATACCCACCAACTTAAA---------- chrUn_5260 ACCCATACCCATAGAAACTTTCTATACCCACCAACTTAAA---------- chr5B_5293 ----ATACCCAT-------------------CAATTTCAA---------- chr4D_5307 ----------------------------------TTTCAA---------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ------CATCCACGGGCATAAATTGACACCCATGCCCATACCCATTGGGT chr7D_1_TraesCS7D01G002900 ------CATCCACGGGCATAAATTGACACCCATGCCCATACCCATTGGGT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 CTTCAATACCCATGGGCATAAATTGGCACCCACGCCCATACCCATCGGGT chr4A_5260 TTTGTGTACCCATGGGTATAAATTGATAACCATGCCCATATCCATCGGGT chr5A_5260 ------TACCCATGGGTATAAATTGACACACATGCCCATACCCATCAAGT chr2B_5260 ------TACCCATGGTCATAAACTGGCCCCCCTGCCCATATCCATCGGGT chrUn_5260 ------TACCCATGGTCATAAACTGGCCCCCCTGCCCATATCCATCGGGT chrUn_5260 ------TACCCATGGTCATAAAGTGGCACCCCTGCCCATATCCATCGGGT chrUn_5260 ------TACCCATGGTCATAAAGTGGCACCCCTGCCCATATCCATCGGGT chrUn_5260 ------TACCCATGGTCATAAAGTGGCACCCCTGCCCATATCCATCGGGT chr5B_5293 ------AATCCATGGGCACAAATTGACACCCATACCCATATCCATTGGGT chr4D_5307 ------TACCCATGGGCATAAATTGGCACCCATGCCCATACCCATCGGGT chr7A_5316 ---------CCATGGGCATAAATTGACACCCATGCCCATACCTATCGGGT chr1D_5316 ---------CCATGGACGTAAATCGACACCCATGCCCATACCCTTCGGGT chr2A_5316 ---------CCATGGGCATAAATTGACACCCATGCCCATACCCATCGGGT chr2B_5316 ---------CCATGGGTATAAATCGATACCCATTCCCATACCCATCAGGT chr5D_5316 ---------CCATGGGCATAAATTGGCACCCATACCCATACCCATCGGGT chr2D_5320 -------------GGGCATAAATTGGCACCCATGCCCATACCCATCGGGT SNPs ------S-----S------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AACCTATACCCAATGGGTATTCAGTGGGTA-------------------- chr7D_1_TraesCS7D01G002900 AACCTATACCCAATGGGTATTCAGTGGGTA-------------------- chr7A_494 -----------------TATCCAATGGTCTATGTTGCCATGGTGTTTAGC chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 ATCCTATACCCAATGGGTATCCAGTGGGTA-------------------- chr4A_5260 ATCCTATACCCAATATGTATCCAATGGATA-------------------- chr5A_5260 ATCCTATACCCAATGGGTATCCAGTGGATA-------------------- chr2B_5260 ATCCTATACACAATGGGTATACAGTGGGTA-------------------- chrUn_5260 ATCCTATACACAATGGGTATACAGTGGGTA-------------------- chrUn_5260 ATCCTATACACAATGGGTATGCAGTGGGTA-------------------- chrUn_5260 ATCCTATACACAATGGGTATGCAGTGGGTA-------------------- chrUn_5260 ATCCTATACACAATGGGTATGCAGTGGGTA-------------------- chr5B_5293 ATCCTTTACCCAATGGGTATCCAATGGGTA-------------------- chr4D_5307 ATCCTATACCCAATGGGTATCCAGTGGATA-------------------- chr7A_5316 ATCCTATACCCAATTGGTATCCAATGGGTA-------------------- chr1D_5316 ATCCTATACCCGATGGGTATCCAATGGTTA-------------------- chr2A_5316 ATCTTGTACCCAATGGGTATCCAATGGGTA-------------------- chr2B_5316 ATCCTATACCCAATGGGTATCCAATGGGTA-------------------- chr5D_5316 ATCCTATACCCAATGGGTATCCAGTGGATA-------------------- chr2D_5320 ATCCTATACCCAATGGGTATCCAGTGGGTA-------------------- SNPs -S------------------S----------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 GCTAACCGTGTTTAGTACTAAACAAGATTAGCACCCTCCTCTAATTAATA chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 GTATACCTAATGTCAATGTGAGCGTCATCCAATTAATTAAATACTACATA chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------C chr7D_1_TraesCS7D01G002900 -------------------------------------------------C chr7A_494 TTATCAACGTGCAACTAAGATCTTAACAGATATTAGTGTGTGAAGCAATT chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------T chr4A_5260 -------------------------------------------------C chr5A_5260 -------------------------------------------------C chr2B_5260 -------------------------------------------------C chrUn_5260 -------------------------------------------------C chrUn_5260 -------------------------------------------------C chrUn_5260 -------------------------------------------------C chrUn_5260 -------------------------------------------------C chr5B_5293 -------------------------------------------------G chr4D_5307 -------------------------------------------------T chr7A_5316 -------------------------------------------------C chr1D_5316 -------------------------------------------------C chr2A_5316 -------------------------------------------------C chr2B_5316 -------------------------------------------------C chr5D_5316 -------------------------------------------------T chr2D_5320 -------------------------------------------------C SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AATA--TATA--GCATTTA-CAT-TTTGAAAAAGTA---GAGAAATGAGT chr7D_1_TraesCS7D01G002900 AATA--TATA--GCATTTA-CAT-TTTGAAAAAGTA---GAGAAATGAGT chr7A_494 AATA--TATT--GCC--TA-ATA-TTT-CATCAGAT---A-AAATATTGT chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 AATA--TATA--GCATTTA-AAAATTT-AAAATGTA---GAGAAATGAGT chr4A_5260 AATA--TATA--TCATTTA-CAT-TTTGATTTTTTTTATA-TAAACAAGT chr5A_5260 AACA--TATA--TCATTTA-AAT-TTT---AAAGTA---GAGAAATGAGT chr2B_5260 AATA--TATA--GCATTTA-ATT-TTT-CAAAGGTA---A-TAAATGAGT chrUn_5260 AATA--TATA--GCATTTA-ATT-TTT-CAAAGGTA---A-TAAATGAGT chrUn_5260 AATA--TATA--ACATTTA-ATT-TTT-CAAAGGTA---AATAAATTGGT chrUn_5260 AATA--TATA--ACATTTA-ATT-TTT-CAAAGGTA---AATAAATTGGT chrUn_5260 AATA--TATA--ACATTTA-ATT-TTT-CAAAGGTA---AATAAATTGGT chr5B_5293 AATA--TATA--GCATTTACATT-TTG-AAAAGGTA---GAGAAATGAGC chr4D_5307 AATAATTATA--GCATTTAAAAT-TTC-AAAATGTA---GAGAAATGGGT chr7A_5316 AACA--TATATAGCATTTAAATT-TTA-CAGAAGTA---CATACATGAGT chr1D_5316 AATA--TGTA--GCATTTACATT-TTG-AAAAAGTA---GAGAAATGAGT chr2A_5316 AACA--TATA--TCATTTAAAAT-TTA-AAGAAGTA---CATAAATGAGT chr2B_5316 AATC--TACGAT--ATTTAATTT-TCT-AAAAAGTT---GAGAAATGAGT chr5D_5316 AATAATTATA--GCATTTAAAAT-TTT-AAAATGTA---GAGAAATGGGT chr2D_5320 AATA--TATG--ACATTT------TTT-TAAAGGTG---GAGAAATGAG- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTAAAATTCAACTGAT--GATGGGCAATCAGTCTAGCACCGACGCGGCCT chr7D_1_TraesCS7D01G002900 CTAAAATTCAACTGAT--GATGGGCAATCAGTCTAGCACCGACGCGGCCT chr7A_494 CTAATATTAACGTGCATTGCATGTACTCCCTCTGTAAACGTAAACGC--- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 TTAAAATTCAAGTGAT--CATGGACGAGTAGTATAGCACTAACACAGGTT chr4A_5260 TTCAAATTGAAGTGGT--AATGGGCGAGCAGGATAGCAATGAAAAGGGAT chr5A_5260 GTAAAATTCATGTGAT--TATGGGTGATCTGTCTAGTATCGACGCAACCT chr2B_5260 CTAAAATTCAAGTGAT--GATGGGGGAGCAATATAACACCGGCGCGGCCT chrUn_5260 CTAAAATTCAAGTGAT--GATGGGGGAGCAATATAACACCGGCGCGGCCT chrUn_5260 TTAATATTCAAGTGAT--GATGGGGGAGCAATATAACACCGGCGCGGCCT chrUn_5260 TTAATATTCAAGTGAT--GATGGGGGAGCAATATAACACCGGCGCGGCCT chrUn_5260 TTAATATTCAAGTGAT--GATGGGGGAGCAATATAACACCGGCGCGGCCT chr5B_5293 CCAAAATTAAAGTAAT--ATTGGGCAAGCAGTCTAGCAACGATGCAACAT chr4D_5307 TTAAACTTCAAGTGAT--CATGGACGAGTAGTATATCACTAACACGGGCT chr7A_5316 GTAAAATTCAAGTGAT--GATGGGCAATCAATCTAGTACCGACAAGACGT chr1D_5316 CTAAAATTCAAATGATATGATGGGCGAGCAGTCTAGCACCTAGTCGGCCT chr2A_5316 GTAAAATTCAAGTGAT--GATGGGCGATCAATCTAGTACCGACGTGGCGT chr2B_5316 CTAAAATTCAAGTGGT--GATAAGTGAGGAGTGTAGCACCACCGTGGCCT chr5D_5316 TTAAACTTCAAGTGAT--CATGGACGAGTAGTATATCACTAACACGTGCT chr2D_5320 TTTAAATTCAAGTGAC--GACGGGCGAGCAGTATAGCACTGACGTGGCCT SNPs -----------S-------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CCTCCAGTGGATGGCCTATTGGAGGCAACACGGGAGTACGATA-AGCAGT chr7D_1_TraesCS7D01G002900 CCTCCAGTGGATGGCCTATTGGAGGCAACACGGGAGTACGATA-AGCAGT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 GCAATGGTGGGTGGCCTCTTGGAGGCATCAAGG--TTATGAGC-GGCGGT chr4A_5260 CCTTCGGTGGGTGTCTTA--GAAGGCGGTAAGGGGGTACAAGT-AGTAGT chr5A_5260 CCTCCGGTGGGTGGCCAATTATAGGCGACAAGGGAGTACGATA-AGCAGT chr2B_5260 CCTTTGATGGGTGGTCTGTTTGAGGCATCAAGGGAGTATGAGC-AACGGT chrUn_5260 CCTTTGATGGGTGGTCTGTTTGAGGCATCAAGGGAGTATGAGC-AACGGT chrUn_5260 CCTTTGATGGGTGGTCTGTTTGAGGCATCAAGGGAGTATAAGC-AATGGT chrUn_5260 CCTTTGATGGGTGGTCTGTTTGAGGCATCAAGGGAGTATAAGC-AATGGT chrUn_5260 CCTTTGATGGGTGGTCTGTTTGAGGCATCAAGGGAGTATAAGC-AATGGT chr5B_5293 CCTCTGGTGGTTGACATCTTGGACACAACAAGGGAGTAAGAGC-AACAAT chr4D_5307 ACTATGGTGGGTGGCCTCTTGGAGGCATCAAGGGAGTATGAGCGGGCGGT chr7A_5316 CCTCTGGTGTGTGGCCAATTCCAGCCGGCAAGGGATTACGAGA-AATGGT chr1D_5316 CCTCCCATGGGTGGCCTATTGGAGGCAGCAAGGGAGTACAAGT-AGCAGT chr2A_5316 CCTCCAATGTGTGGCCAATTCCAGGAGGCAAGGGATTATGATA-AGTGGT chr2B_5316 CCTCCGGTGGGTGGCCTCTTGGAGGAATCAAGCGAGTATGAGC-AATGGT chr5D_5316 ACTATGGTGGGTGGCCTCTTGGAGGCATCAAGGGAGTATGAGCGGGTGGT chr2D_5320 CCTCTGATGGGTGGCCTCTTGGAGGCATCAAGGGAGTATAATC-AGCCGT SNPs ----------S-------------------S------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TGGTGGAAGCCCGACACAGTGGGAGGCGGCGGTGGGAACTAGGGATC-TT chr7D_1_TraesCS7D01G002900 TGGTGGAAGCCCGACACAGTGGGAGGCGGCGGTGGGAACTAGGGATC-TT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 TGGTGGAA-CTCGGTACAGTGGGACGTCGTTGTGGGAATGGGGAATTGCT chr4A_5260 TGGTGGAAGCGCGACAAATTGGGAGGCGGCGGTGGGTACTCAGGATCGTT chr5A_5260 TGGTGGAAGCCCGACACAGTGGGAGGTGGCGGTGGGAATATGGAATCGCT chr2B_5260 TAGTGGAAGCCTGGTGCAGTAGGAGGCAGTGGTAGGAATGAGAA-TC-CT chrUn_5260 TAGTGGAAGCCTGGTGCAGTAGGAGGCAGTGGTAGGAATGAGAA-TC-CT chrUn_5260 TAGTGAAAGTCCGGTGCAGTAGGAGGCAGTGGTAGGAATGGGAA-TC-CT chrUn_5260 TAGTGAAAGTCCGGTGCAGTAGGAGGCAGTGGTAGGAATGGGAA-TC-CT chrUn_5260 TAGTGAAAGTCCGGTGCAGTAGGAGGCAGTGGTAGGAATGGGAA-TC-CT chr5B_5293 TGGTGGAGTTCCGATGTTGTGGGAGGCGGGAATCAAAACTAGGGATCGCA chr4D_5307 TAGTAGAAACCCGGTACAGTGGGAGGTCGTGCTGGGAATGGGGAATCGCT chr7A_5316 TGGTGGAAGCC-GGCATAGTGGAAGGTGACGATGGGAACTGGGGTTTGCT chr1D_5316 TGGTGGAAGCCCAATGCAATGGGAAGCGGCGGCAGGAACT-GGGCTCGCT chr2A_5316 TGGTGGAAGCC-GTCATAGTGGAAGGCGGCGATGGGAACTGGGGTTCGCT chr2B_5316 TGGTGGAAGCTCGACGTAGTGGGAGGTGGCTGTGGGAATCGGGGATCGCT chr5D_5316 TAGTAGAAACCTGGTACAGTGGGAGGTCGTGCTGGGAATGGGGAATCGCT chr2D_5320 TGGTGGAATCCCAATGTAGTGGAAGGCGGTGGCGGGAATGGGGGATCGCT SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GGTCCGAGAGTTGGACTAGAATCCGTTGGTGATGAATTGGGATTTCATC- chr7D_1_TraesCS7D01G002900 GGTCCGAGAGTTGGACTAGAATCCGTTGGTGATGAATTGGGATTTCATC- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 GGATCGAGCATTGGATTACG-------AGCGAAGAGTCGCGATTTAATC- chr4A_5260 GGATCAAGAGTTCAACAAGAGTACGGTGATAATTAGTCAATATTTCCTC- chr5A_5260 GGTTCAAGAGTTGGACAAGAGTGTGTTGGTGATGAGCCGAGATTTCATT- chr2B_5260 GGATCGAGAGTTTGACAT----------GCAATGAGTAAAGATTTCATC- chrUn_5260 GGATCGAGAGTTTGACAT----------GCAATGAGTAAAGATTTCATC- chrUn_5260 GGATCGAGAGTTTGACAT----------GCGATGAGTAAAGATTTCATC- chrUn_5260 GGATCGAGAGTTTGACAT----------GCGATGAGTAAAGATTTCATC- chrUn_5260 GGATCGAGAGTTTGACAT----------GCGATGAGTAAAGATTTCATC- chr5B_5293 TGATCGAGAGTTGTACAAGAATCTGGTGGTGGTGAGTCATGATTTCATT- chr4D_5307 GGATCGAGCGTTGGATAGGAGTCTGGTAGCGAAGAGTCAAGATTTCATC- chr7A_5316 AGTTCGAGAGTTGGAAGAGAATGTGTTGGTGATGAGTTAAGATTTCATC- chr1D_5316 AGATCGAGAGCTGGACAAGAGTCCGATGGCTATGAGTCGAG-TTTCATC- chr2A_5316 AGTTCAAGAGTTGGAAAAGAGTGCATTGGTGATGAGTCGAGATTTCATC- chr2B_5316 GGATTGAGAGATGGACAGGAGTTTGATGAAGATAATTAAAGATTTCATC- chr5D_5316 GGATCGAGCGTTGGATAGGAGTCTGGTAGCGAAGAGTCAAGATTTCATC- chr2D_5320 AGGTCGAGAGTTGGACAGCAATTCGGTAGCGAAGGGTCAAGATTTTGTCT SNPs ---S-------------------------------S---S---------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GTTTTGAGGAGTCACATAGGACGTAGGAGGAATGCCT------GAGTGCT chr7D_1_TraesCS7D01G002900 GTTTTGAGGAGTCACATAGGACGTAGGAGGAATGCCT------GAGTGCT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 TTTTCAACGAGTCACATAGGACGCATGAGCAGTG--GCTAGCAGGTGATT chr4A_5260 ATTTCAAGGAGTCATATAGGATGTAGGAGGAGTGACGCGAGTTGGTGGTT chr5A_5260 GTTTCAAGGAGTCATGTAGGACATAAGAGGAGA---GCGAGCAGATTGTT chr2B_5260 CTTTTGAGGAGATTCATAGGACGTAGGAGGAGTG--GCGAATAGGTGATT chrUn_5260 CTTTTGAGGAGATTCATAGGACGTAGGAGGAGTG--GCGAATAGGTGATT chrUn_5260 ATTTCGAGGAGATTCATAGGACGTAGGAGGAGTG--GCGAATAGGTGATT chrUn_5260 ATTTCGAGGAGATTCATAGGACGTAGGAGGAGTG--GCGAATAGGTGATT chrUn_5260 ATTTCGAGGAGATTCATAGGACGTAGGAGGAGTG--GCGAATAGGTGATT chr5B_5293 GTTTCGATGAGTCATATAGGACGTCGGAGGAGTG--GTGAGCTAGCGATT chr4D_5307 TTTTCAACGAGTCACATAGGACGCATGAGGAGTG--GCGAGCAGGTGATT chr7A_5316 ATTTTGAGGAGTCACATAGGACATAGGAGGAGTG---TGAGCTGGTTGTT chr1D_5316 ATTTCAAGGAGTCGCATAGGACGATGGAGGAGTG--GCGAGCTGATGGGC chr2A_5316 ATTTCGAGGAGTCACATGGGACATAGGAGGAGTG---CGAGCTAGTTGTT chr2B_5316 GTTTCGAGGAGACACATATGATGTAGGGGGAGTG--GCGAGAAAGTGCGT chr5D_5316 TTTTCAACGAGTCACATAGGACGCATGAGGAGTG--GCGAGCAGGTGATT chr2D_5320 TTTTCAAGGAGTCACATAAGACTTAGGATGAGTG--GCAAGAAGGTGATA SNPs -------------------------------S--S-S--------S--S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GCGGGCCTAT-TAGCTATTCCTGATTTAGGGAACAAGAG-TTGAGG--G- chr7D_1_TraesCS7D01G002900 GCGGGCCTAT-TAGCTATTCCTGATTTAGGGAACAAGAG-TTGAGG--G- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 ACGGGTCTAT-GAGCTATGACCGATTTAAGGAATCGATAC--TTAG--G- chr4A_5260 ATAATCCTAT-GAGCTATGGTTGGTTTTGTGAATAAGGGATTTAAG--G- chr5A_5260 GCAAGCCTAT-GAACTATGGTTGGTTTAGGAAATAACGGATTGAGA--G- chr2B_5260 GTGGTCCTAT-GAGCTATCGTTAGTTTAGAGAATACAAGATTTAGG--T- chrUn_5260 GTGGTCCTAT-GAGCTATCGTTAGTTTAGAGAATACAAGATTTAGG--T- chrUn_5260 GCGGTCCTAT-GAGCTATCGTCAGTTTAGAGAATACAAGATTTATG--T- chrUn_5260 GCGGTCCTAT-GAGCTATCGTCAGTTTAGAGAATACAAGATTTATG--T- chrUn_5260 GCGGTCCTAT-GAGCTATCGTCAGTTTAGAGAATACAAGATTTATG--T- chr5B_5293 GCGGGCCTATAGAGCTATGACTGGTTTAGGGAATAAGGAATTTAGG--G- chr4D_5307 ACGGGCCTAT-GAGCTATGGACAATTTAATGAAT-CGAGACTT-AG--G- chr7A_5316 GGGAGCCTAT-TAGCTATGGTTGGTTTAGGGAAT-AAAGAATT-AAAAT- chr1D_5316 GTGGGCCTAT-GAGTTATTGCTGAGTTAGCGAATAAGAGATTTAGG--G- chr2A_5316 GCGAGCCTAT-GAGCTATGGTTGGCTTAGGGAATAAGGGATTAAAA--G- chr2B_5316 GTGAGCATAT-AATCTATGGCCGGTTTAGGGAATACAAGATTT-AG--GT chr5D_5316 ACGGGCCTAT-GAGCTATGGACAATTTAATGAAT-CGAGACTT-AG--G- chr2D_5320 ATGGGCCTAT-GAGCTATGGCCGGTTTAAGGAATACGAGATTT-AG--G- SNPs -------------------S-------------S---------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTGAGCCATAGGAGTTGGATGCTGACCCCACATGTCATTGGAGTTA-TTT chr7D_1_TraesCS7D01G002900 TTGAGCCATAGGAGTTGGATGCTGACCCCACATGTCATTGGAGTTA-TTT chr7A_494 ------------------------------------------------TT chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 GTGGGCCATACGAGTTGGATGATGACCCCACATGTCATAGGAGTTA-TTT chr4A_5260 TTAGGCCATTGGGGTTGGATGTCGACCACACTTGTCATATGGGTTA-TTT chr5A_5260 TTGGGCCATAAGAGTTGGATGTTGACCCCACATGTCGCAGGAGTTATTTT chr2B_5260 TTGGGTCATAGGAGTTGGATGTTGACCCCACATGTCAGAGAAGTTA-TTT chrUn_5260 TTGGGTCATAGGAGTTGGATGTTGACCCCACATGTCAGAGAAGTTA-TTT chrUn_5260 TTGGGTCATAGGAGTTGGATGTTGACCCCAGATGTCAGAGAAGTTA-TTT chrUn_5260 TTGGGTCATAGGAGTTGGATGTTGACCCCAGATGTCAGAGAAGTTA-TTT chrUn_5260 TTGGGTCATAGGAGTTGGATGTTGACCCCAGATGTCAGAGAAGTTA-TTT chr5B_5293 TTGGGCCAAAGGAGTTTGATGCTGATTCCACATGTCATACGAGTTA-TTT chr4D_5307 ATGGGCCATGGGAGTTGGATGATGACCCCACATGTCGTAGGAGTTA-TTT chr7A_5316 TTGGGCAATAGGAGTTGGATGTAGACCCCACATATCATAGGAGTTA-TTT chr1D_5316 TTGGGCCATAGGAGTTGGATGTTGACTCCACAAGTCACAGGAGTTATTTG chr2A_5316 TTGGGCCATAGGACTTGGATGTAGACCCCGCATGTCATAGGAGTTA-TTT chr2B_5316 TTGGGCCATGAAAGTTGGATGTTGACACCACATGTTATAGGACTTATTTT chr5D_5316 ATGGGCCATAGGAGTTGGATGATGACCCCACATGTCATAGGGGTTATTTT chr2D_5320 ATGGGCCACAAGATTTGGATGTTGACCTCACATGACATAGGAGTTATTTT SNPs ---S----------------------------------S----------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTCATTTTTTATTTTTCTTTT---GGGTATCC--TGGGTTACCCATGGGC chr7D_1_TraesCS7D01G002900 TTCATTTTTTATTTTTCTTTT---GGGTATCC--TGGGTTACCCATGGGC chr7A_494 --T----TATATTAGTTTATGGAGGGAGAAAACATGCGAGTTACGA---- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 TTA----TTTATTAATTTTTTCTGGG-TATCCATTGGGTTACCCATGGGT chr4A_5260 TCC----TTTATTAACTTTTTCTGGG-TATCCATTGGGTTGCCCATAGGC chr5A_5260 -CA----CTTATT-ATTTTTTCTGGG-TATCCATTGGGTTACCCGTGGGC chr2B_5260 TCA----TTTATTAGTTTTTT---GG-TATCCATTGGGTTACCCAAGGGC chrUn_5260 TCA----TTTATTAGTTTTTT---GG-TATCCATTGGGTTACCCAAGGGC chrUn_5260 TCA----TTTATTAGTTTTTT---GGGTATCCGTTGGCTTACCCAAGGGC chrUn_5260 TCA----TTTATTAGTTTTTT---GGGTATCCGTTGGCTTACCCAAGGGC chrUn_5260 TCA----TTTATTAGTTTTTT---GGGTATCCGTTGGCTTACCCAAGGGC chr5B_5293 TCA----TTTATTAATAATTT-TGGG-TATCCTGTGGGTTACCCATGGGC chr4D_5307 TCA----TTTATTAATTGTTTCTGGG-TATCCATTGGGTTACCCATGGGC chr7A_5316 TCA----TTTATTAATATTTTCTAGG-TACCCATTGGGTTACCCATAGGC chr1D_5316 -CA----TTTAATAATT-TTTCTAGG-TATCCATTGGGTTACCCATGGGG chr2A_5316 -AA----TTTATTAATGTTTTCTGGG-TATCCCTTGGATTACCCATGGGC chr2B_5316 --A----TTTATTAGTTTTTTGTGGG-TATTCATTGGGTTACCCATGGGC chr5D_5316 -CA----TTTATTAATTGTTTCTGGG-TATCCATTGGGTTACCCATGGGC chr2D_5320 -CA----TTTATTAATGTTTTATGGG-TATCCGTTGGGTTACCCATGGGC SNPs ---SSSS------SS-S--------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GCAATTTCATACCCATGCCCCACCCATATATTTTGCGGGTAGGGATACCA chr7D_1_TraesCS7D01G002900 GCAATTTCATACCCATGCCCCACCCATATATTTTGCGGGTAGGGATACCA chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 GCATTTTCTTACCCATATCCTACCCATAAATTTTGCGGGTAAGAATACCC chr4A_5260 GCAATTTCATACCCATGCCCTGCCCATATATTTTGCTGGTATGGATACCC chr5A_5260 GCAGTCTCATATCCATGCTCTACCCATATATTTTGCGGGTATGGAGACCC chr2B_5260 GCAATTTCATACCTATGCCTTACTCATGTATTTTGCGGGTATGGATACCC chrUn_5260 GCAATTTCATACCTATGCCTTACTCATGTATTTTGCGGGTATGGATACCC chrUn_5260 GCAATTTCATACCCATGCCCTACCCATATATTTTGCGGGTATGAATACGC chrUn_5260 GCAATTTCATACCCATGCCCTACCCATATATTTTGCGGGTATGAATACGC chrUn_5260 GCAATTTCATACCCATGCCCTACCCATATATTTTGCGGGTATGAATACGC chr5B_5293 GCAATTTCATACCCGTGCCCTACCCATACATTTTACGGGTATGGATACCC chr4D_5307 GCAATGTCATACCCATATCCTACCCATATATTTTGCGGGTATGGATACCC chr7A_5316 GCAATCTCATACTCATGCCCTACCCATATATTTTGCGGGTATGGATACCC chr1D_5316 GCAATTTCATACCCATGCCCTATCCATAT-TTTTGCGGGTATGGATACCC chr2A_5316 GCAATCTCATACCCATGCCTTACCCATATATTTTGCGGGTATGGATACCC chr2B_5316 GCAATTTCATACCCATGCCCTACCCATATATTTTGCGGGTATGGATACCC chr5D_5316 GCAATGTCATACCCATATCCTACCCATATATTTTGCGGGTATGGATACCC chr2D_5320 ATCATTTCGTACCCATGCCCTATCCATATATTTTGTGGGTATGGATATCC SNPs --------------------S--------------------S-------S forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATTACCCATGGGTACAAAATCTTACCAAGTCATTCCCATGCCCGCTGTTT chr7D_1_TraesCS7D01G002900 ATTACCCATGGGTACAAAATCTTACCAAGTCATTCCCATGCCCGCTGTTT chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 ATTACCCATGGGTACAAAATCTCTTCAAGTCTTGCCCATACCCGTTGTTT chr4A_5260 AT-ACCCATGGGTATAAAATATTGCTAACACTTGCCCATGCCCACTATTT chr5A_5260 ATTACTCATGGGTACAAAATCTTGCCAAGTCTTACCCATGCCCGATGTTT chr2B_5260 ATTATCCGTGGGTACAAAATGTTTTCAAGCCATGCAGATGCCCATTGTTT chrUn_5260 ATTATCCGTGGGTACAAAATGTTTTCAAGCCATGCAGATGCCCATTGTTT chrUn_5260 ATTATCCGTGGGTACAAAATGTCTTCAAGCCATGCCCATGCCCATTGTTT chrUn_5260 ATTATCCGTGGGTACAAAATGTCTTCAAGCCATGCCCATGCCCATTGTTT chrUn_5260 ATTATCCGTGGGTACAAAATGTCTTCAAGCCATGCCCATGCCCATTGTTT chr5B_5293 ATTACCCATGGGTACAAAATCTTGCCAACTCTCACCCATGCCTATTATTT chr4D_5307 ATTACCCATGGGTACAAAATCTCTTCCAATCTTGCCCATACCCGTTGTTT chr7A_5316 ATTACCCATAGATACAAAATCTTGCCAAGTCTTGTCTATGCCCATTATTT chr1D_5316 ATTACCCATGGATATAAAATCTTGTCAAGTCT----CATGCCCACTGTTT chr2A_5316 ATTACCCATGGGTACAAAATCTTGCCAAGTCTTGCCCATGCCCACTATTT chr2B_5316 ATTACCCATGGGTACAAAAGCTCTTCAAGTCTTGCCCATGCCCATTGTAT chr5D_5316 ATTACCCATGGGTACAAAATCTCTTCCAGTCTTGCCCATACTCGTTGTTT chr2D_5320 ATTACGCGTGGGTACAAAATCTCTCCAAGTCTTGCCCATGCCCGTTGTTT SNPs -----------------------S---------S---------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TCGGGTAGGGCACCTGCGGGTACCCATACCCATGGGCAAAACTGCCAACC chr7D_1_TraesCS7D01G002900 TCGGGTAGGGCACCTGCGGGTACCCATACCCATGGGCAAAACTGCCAACC chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 TCGGGTAGGGTACCCACGGGTACCCATACGCATGGGCAAAACTGCCATCC chr4A_5260 TTGGGTAGGGTACCCACGGGTACCCATACCCATGGACAAAACTGC----- chr5A_5260 TCGGGTAGGGTACCCGCGGATATCCATACCCATGGGCAAAACTGCC---- chr2B_5260 TCGGGTAGGGTACCAACGGGTACCCATACCCATGGGCAAAACTGCCA--- chrUn_5260 TCGGGTAGGGTACCAACGGGTACCCATACCCATGGGCAAAACTGCCATCC chrUn_5260 TCGGGTA----------GGGTACCCATACCCATGGGAAAAACTGCCATCC chrUn_5260 TCGGGTA----------GGGTACCCATACCCATGGGAAAAACTGCCATCC chrUn_5260 TCGGGTA----------GGGTACCCATACCCATGGGAAAAACTGCCATCC chr5B_5293 TCGGGTAGGGTCAC------------------------------------ chr4D_5307 TCGGGTAGGGTACCCGCGGGTACCCATACCCATGGGCAAAACTGCCATCC chr7A_5316 TCGGGTAGGGTACCCGCGGATACCCATACCCATAGGAGAAATTGCCATCC chr1D_5316 TCGGGTAGGGTACCCACGGGTACCCATACCCATGGGCAAAACGGCCATCC chr2A_5316 TTGGGTAGGGTACCCGCGGATACCCATACCCATGGGCTAAATTGCCATCC chr2B_5316 TCGGGTAGGGTACCCGCGGGTACCCATACGCATGGGCAAAACTGCCATCC chr5D_5316 TCGGGTAGGGTACCCGCGGGTACCCATACCCATGGGCAAAACTGCCATCC chr2D_5320 TCGGGTAGGGTACCCGCGGGTACCCATACCCATGGGCAAAACTGCCATCC SNPs ----------S---S--------------------------------S-- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTCCCATGCCAAACCCAAACTCAGTGAGTTCGGGTTTGGCATGGGAATCA chr7D_1_TraesCS7D01G002900 CTCCCATGCCAAACCCAAACTCAGTGAGTTCGGGTTTGGCATGGGAATCA chr7A_494 ----------------------------------TTTGTCATGGAAATCA chr4A_494 -------------------------------------------------- chr7A_1114 --------------------------------GGTTCGATGTGGGAGTTA chr4A_1114 -----------------------------------TCGGTGTGGGAGTTA chr7D_1115 -------------------------------------------------- chr2B_5248 CT------------------------------------------------ chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 CT------------------------------------------------ chrUn_5260 CT------------------------------------------------ chrUn_5260 CT------------------------------------------------ chr5B_5293 -------------------------------------------------- chr4D_5307 CT------------------------------------------------ chr7A_5316 CT------------------------------------------------ chr1D_5316 CT------------------------------------------------ chr2A_5316 CT------------------------------------------------ chr2B_5316 CT------------------------------------------------ chr5D_5316 CT------------------------------------------------ chr2D_5320 CT------------------------------------------------ SNPs --SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -TCCCATGCCAAACCCAAACT----------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 CTTCCGTATCAACAACAGATTACTTA----ATTTTACATAAGGCTGAGCT chr7D_1_TraesCS7D01G002900 CTTCCGTATCAACAACAGATTACTTA----ATTTTACATAAGGCTGAGCT chr7A_494 GTTTTGTATCAACAATAGATTACTTA----ATTTTACATAAGACTGAGCT chr4A_494 -------------------------------------------------- chr7A_1114 ACTTTGTATCAACAACAGAGATTACATATTATTTTATATAAGGCTGAGCT chr4A_1114 ACTTTGTACCAACAACAGATTACATA----TATTT--------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S--SS--------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ACTGGTGTTCTTTTCTTGCAAAAATCATGATCTTGTACGGAACTGGAA-- chr7D_1_TraesCS7D01G002900 ACTGGTGTTCTTTTCTTGCAAAAATCATGATCTTGTACGGAACTGGAA-- chr7A_494 AATGGTATTCTATTCTTACGAACATCATGATCATCTATGGAACTGGAA-- chr4A_494 -------------------------------------------------- chr7A_1114 AATGGTATTCTATTCTTAACAAAACCATGATCACCTATGGGAGTTGAACA chr4A_1114 ----------------TACATAAACCATGATCACCTCTGAGACTGGAA-- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -S----S----S-----S--------------S-S--S------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 ATCATTCAAACCCTAAATTTTCAGGACATTACAATTTCAGATATAGTGGC chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 ACATTGGGCCACCCATGTTCAAATATGTGCCTGCTTGCAAACAAAAAACT chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 GAAAGTGATGTTTTGCCAAGAACATCTAACTAGTTCATTGTCCACAACTA chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 AGTGAACTTCCAAGACGAAGATGAGGCCATCATTTAATAATTTCTTCACA chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 AGTTCACTCAGTAATCTAAACTTTCAAGTTAACTAAGTGTGGATTTGACC chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 CCACCTGTAAAGAGGAGGCAACCATCTAATCATCTCATGATAATCTCTCT chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 -------------------------------------------------- chr7A_494 -------------------------------------------------- chr4A_494 -------------------------------------------------- chr7A_1114 AATCTGTCTGAGCATTATAAATTTTGGAATGGTATTCTATTCTTGCAAAA chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ------------------------CAATCATTCAAACCCTAAATTTTCAG chr7D_1_TraesCS7D01G002900 ------------------------CAATCATTCAAACCCTAAATTTTCAG chr7A_494 ------------------------CAATCATTCAAACCCAAAATTTTCAG chr4A_494 -------------------------------------------------- chr7A_1114 ATCAAGATTACCTATGGAACTGAGCAATCATTCAAACCCTAAATTTTCAG chr4A_1114 ------------------------TATAGT--------CTAAATTTTCAG chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GACATTGCAAATGCAAATACAGTGGCACATTGGGCCGCTCATGTTCAAAC chr7D_1_TraesCS7D01G002900 GACATTGCAAATGCAAATACAGTGGCACATTGGGCCGCTCATGTTCAAAC chr7A_494 GACATTGCAAATGCAAATACAGTGGCACATTGGGCCGCTCATGTTCAAAC chr4A_494 -------------------------------------------------- chr7A_1114 GACATTGCAAATGCATATATAGTGGCGCATTGGGCCGCTCATGTTCAAAC chr4A_1114 GACATTGCAAATGCGAATATAATGGCACATTGGGCCACTCATGTTCAAAC chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATGTGTGGATGCAAACAAACTCTGAAAGCATGTATCTTATACTTTAAACC chr7D_1_TraesCS7D01G002900 ATGTGTGGATGCAAACAAACTCTGAAAGCATGTATCTTATACTTTAAACC chr7A_494 ATGTGTGGATGCAAACAAACTCTGAAAGCATGTATCTTATACTTTAAACC chr4A_494 -------------------------------------------------- chr7A_1114 A--TGTGGATGCAAACAAACTCTGAAAG---------------------- chr4A_1114 ATGTGTGGATGCAAACAAACTCTGAAAG---------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AAAACTTTATGTCCTCTTTTGGTAGGTATGCCCAGTTCCTTTGCAGGCAG chr7D_1_TraesCS7D01G002900 AAAACTTTATGTCCTCTTTTGGTAGGTATGCCCAGTTCCTTTGCAGGCAG chr7A_494 AAAACTTTGTGTCCTCTTTTGGTAGGCATGCCCGGTTCCTTTGGAGGCAG chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --------S-----------------S------S---------S------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TAACCCATTTGGTTAACTTTGTGTTTGCAGAACTTTGTAAGGTGGTTTGC chr7D_1_TraesCS7D01G002900 TAACCCATTTGGTTAACTTTGTGTTTGCAGAACTTTGTAAGGTGGTTTGC chr7A_494 TAACCCATTTGGTTAACTTTGTGTTTGCAGAACTTTGTAAGGTGGTTTGC chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AGAACATTATAAGATGGTCTGCAGTGACAGTGACACCTCAATCCCGGCCA chr7D_1_TraesCS7D01G002900 AGAACATTATAAGATGGTCTGCAGTGACAGTGACACCTCAATCCCGGCCA chr7A_494 AGAACATTATAAGATGGTCCGCAGTGACAGTGACACCTCAATCCCGGCCA chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------S------------------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------TGCAGTGACAGTGACACCTC----------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TAATGATACCACAATCAGAGGAGGGAAGAATCTGACGGACTTGTTGGATC chr7D_1_TraesCS7D01G002900 TAATGATACCACAATCAGAGGAGGGAAGAATCTGACGGACTTGTTGGATC chr7A_494 TAATGATGCCACAATCAGAGGAGGGAAGAATCTGACGGACTTGTTGGAAC chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------S----------------------------------------S- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ATGGAGCAAGGGATAAGTGCATACAGGGCCGGCCCTAGGCCATGGCAAGA chr7D_1_TraesCS7D01G002900 ATGGAGCAAGGGATAAGTGCATACAGGGCCGGCCCTAGGCCATGGCAAGA chr7A_494 ATGGAGCAAGGGATAAGTACATACAG------------------------ chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------------------S-------SSSSSSSSSSSSSSSSSSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AGTGCGACGGCCTAGGGCCCATGTCAAATAAGGGCTCATTACATCTACAT chr7D_1_TraesCS7D01G002900 AGTGCGACGGCCTAGGGCCCATGTCAAATAAGGGCTCATTACATCTACAT chr7A_494 --TGCGACGGCCTATGGCCCATCTCAAATAAGGGCTCATTACATCTACAT chr4A_494 --------GGCCTATGGCCCATCTCAAATAAGGGCTCATTACATCTACAT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs SS------------S-------S--------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 GCATGAATACATTAC--TTTTTTTTTACAAAACACGTCAACACAAAGGAT chr7D_1_TraesCS7D01G002900 GCATGAATACATTAC--TTTTTTTTTACAAAACACGTCAACACAAAGGAT chr7A_494 GCATGAATACATTACT-TTTTTTTTTACAAAACACGTCAACACAAAGGAT chr4A_494 GCATGAATACATTACTGTTTTTTTTTACAGAACACGTCAACACAAAGGAT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 AACTTTGCTCATGGATATTTAACTCGATCAATCATGAATGAATAGTTAAG chr7D_1_TraesCS7D01G002900 AACTTTGCTCATGGATATTTAACTCGATCAATCATGAATGAATAGTTAAG chr7A_494 AACTTTGCTCATGGATATTTAACTCTATCAACCATGAATGAATAGTTAAG chr4A_494 AACTTTGCTCATGGATATTTAACTCTATCAACCATGAATGAATAGTTNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------S-----S------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 TTAGAATTATGGGGTTTGGCCTGCTG------------------------ chr7D_1_TraesCS7D01G002900 TTAGAATTATGGGGTTTGGCCTGCTGCTCATTTATANNNNNNNNNNNNNN chr7A_494 TTAGAATTATGGGGTTTGGCCTGCTGCTCATTTATATATATTT------- chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_494 -------------------------------------------------- chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_494 -------------------------------------------------- chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_494 -------------------------------------------------- chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_494 -------------------------------------------------- chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 NNNNNNNNNNNNNNNNTATATATTTTGGGAGGGGGCGGGAGGGGGCTTAC chr7A_494 ----------------------TTTTGGGAGGGGGTGGGAGGGGGCTTAC chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----------------SSSSSS-------------S-------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 ------------------TATATTTTGGGAGGGGGCGG------------ input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CCCCCCATATTTAGGGGGATCCTT--------TCCCCGGCATGACACCAC chr7A_494 CCCCCCATATTTAGGGGGATCCTTGCCCTCCTTCCCCGGCATGACACCAC chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AATATATTTGTTCAATGGTTGCTTATGGTTGAGTATATGTATGTTATAAC chr7A_494 AATATATTTGTTCAATGGTTGCTTATGGTTGAGTATATGTATGTTATAAT chr4A_494 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------S forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CATCATCTGTATCATTTAATCACAGTTACATGGTATATTAAGACCTCATT chr7A_494 CATCATCTGTATCATTTAATCACAGTTACATGGTATATTAAGACCTCATT chr4A_494 NNNNNNNNNNNT-------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TGATAAATAAAATTACTTTATATATATAATTATAACTTAATAATGATTTT chr7A_494 TCCTAAATAAAATCACTTTATATATATAATTATAACTTAATAATGATTTT chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -SS----------S------------------------------------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CATGATATGCAATATATACTGATGAAAGTATTACTTCTACTCTTTTATAC chr7A_494 CATGATATGCAATATATACTGATGAAAGTATTACTTCTACTCTATTATAC chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------S------ forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 ACGTTAGGGCCAATGTATAAAATTCGCACTAGGGCCTCCAAAATATTAGG chr7A_494 ACTCCAT------TGTATAAAATTCGCACTAGGGCCTCCAAAATATTAGG chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs --SSS-SSSSSSS------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 GCCGGCCCAGATCTGCTAGAACAGTTTTTATTCTCCTTCCAGTATTTTGT chr7A_494 GCCGGCCCAGATCTGCTAGAACAGTTTTTATTCTCCTTCCTGTATTTTAT chr4A_494 ------CCAGATCTGCTAGAACAGTTTTTATTCTCCTTCCAGTATTTTGT chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AGTACCTATGAATTGGCCCTTTTACAAATCTCTTATCATAGTTTTTCATG chr7A_494 AGTTCCTATGAGTTGGCCCTTTTAAAAATCTCTTATCATAG-TTTTCATG chr4A_494 AGTACCTATGAATTGGCCGTTTTACAAATCTCTTACCATAG-TTTTCATG chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -----------------------------------------S-------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TGAAACTGAATGCAGAGGCTGGTACTTCAGCATATCGTCCAAAGACCTTT chr7A_494 TGAAACTGAATGCAGAGGCTGGTACTTCAGCATATCGTCCAAAGACCTTT chr4A_494 TGAAACTGAATGCAGAGGCTGGTACTTCAGCATATCGTCCAAAGACCTT- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs -------------------------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 TCGAAGAAGGTTTGCATGCATACATTTCTTCCCAATTATGATATCAGTAA chr7A_494 -CGAAGAAGGTTTGCATGCATAAATTTCTTCTCAATTATGAT-------- chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S---------------------S--------S----------SSSSSSSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 GATCAGTTTGACTAGACTATCTCATATGCTTGTTTTGGCTCTGGGCTTGT chr7A_494 -ATCAGTTTAACTAGAGTATCTCATATGCTTGTTTTGGCTCTGGGCTTGT chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs S--------S------S--------------------------------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 ATGTGACAGAAGGCAAGAGTCAATTGAGGAGGAAAGGGATGAAGAGGTTG chr7A_494 ATGTGACAGAAGGCAAGAGTCAATTGAGGAGGAAAGGGATAAAGAGGTTG chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ----------------------------------------S--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 AGAAGACTGTAAGTTATTCTCTTCCTGTCATAATTATGCAACACTCCTGG chr7A_494 AGAAGAGTATAAGTTATTCTCTTCCTGTCATAATTATGCAACACTCCCAT chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ------S-S--------------------------------------SSS forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 -------------------------------------------------- chr7D_1_TraesCS7D01G002900 CATAATCTGTATTATAGCTAGGGCCTTGTTATATTTTGAAGCATTTGTCG chr7A_494 CAT-ATCTGTATTATAGCTAGGGCCTTGTTACATTTTGAAACATTTGTCG chr4A_494 -------------------------------------------------- chr7A_1114 -------------------------------------------------- chr4A_1114 -------------------------------------------------- chr7D_1115 -------------------------------------------------- chr2B_5248 -------------------------------------------------- chr4A_5260 -------------------------------------------------- chr5A_5260 -------------------------------------------------- chr2B_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chrUn_5260 -------------------------------------------------- chr5B_5293 -------------------------------------------------- chr4D_5307 -------------------------------------------------- chr7A_5316 -------------------------------------------------- chr1D_5316 -------------------------------------------------- chr2A_5316 -------------------------------------------------- chr2B_5316 -------------------------------------------------- chr5D_5316 -------------------------------------------------- chr2D_5320 -------------------------------------------------- SNPs ---S---------------------------S--------S--------- forward_417 -------------------------------------------------- reverse_2316 -------------------------------------------------- forward_613 -------------------------------------------------- reverse_2318 -------------------------------------------------- forward_2160 -------------------------------------------------- reverse_4417 -------------------------------------------------- forward_3550 -------------------------------------------------- reverse_4724 -------------------------------------------------- forward_3554 -------------------------------------------------- reverse_5564 -------------------------------------------------- forward_5268 -------------------------------------------------- reverse_6410 -------------------------------------------------- forward_6033 -------------------------------------------------- reverse_8720 -------------------------------------------------- forward_7971 -------------------------------------------------- reverse_9269 -------------------------------------------------- input_sequence_5560 ---------------------------------- chr7D_1_TraesCS7D01G002900 GTTCATATCTACTCCCTCCGTCCCAAAATAAGTG chr7A_494 GTTCACATCTACTC-------------------- chr4A_494 ---------------------------------- chr7A_1114 ---------------------------------- chr4A_1114 ---------------------------------- chr7D_1115 ---------------------------------- chr2B_5248 ---------------------------------- chr4A_5260 ---------------------------------- chr5A_5260 ---------------------------------- chr2B_5260 ---------------------------------- chrUn_5260 ---------------------------------- chrUn_5260 ---------------------------------- chrUn_5260 ---------------------------------- chrUn_5260 ---------------------------------- chr5B_5293 ---------------------------------- chr4D_5307 ---------------------------------- chr7A_5316 ---------------------------------- chr1D_5316 ---------------------------------- chr2A_5316 ---------------------------------- chr2B_5316 ---------------------------------- chr5D_5316 ---------------------------------- chr2D_5320 ---------------------------------- SNPs -----S--------SSSSSSSSSSSSSSSSSSSS forward_417 ---------------------------------- reverse_2316 ---------------------------------- forward_613 ---------------------------------- reverse_2318 ---------------------------------- forward_2160 ---------------------------------- reverse_4417 ---------------------------------- forward_3550 ---------------------------------- reverse_4724 ---------------------------------- forward_3554 ---------------------------------- reverse_5564 ---------------------------------- forward_5268 ---------------------------------- reverse_6410 ---------------------------------- forward_6033 ---------------------------------- reverse_8720 ---------------------------------- forward_7971 ---------------------------------- reverse_9269 ----------------------------------