>input_sequence_55598
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-----------------------------------------ATGGATCTGGAAGCGAAATCAAAGATGTTGGATGTAAAA
TCCAAGATGATTGACGCGAGATGCAAGAAGATTGAAGCAAGATCAGCAGAGTTTGACGTGAGATCCAAGCAACTTGATGC
CAGACACTTGCAGTTTGAGGCAAGATCTATGGAGCTAGAAGTGAAATCCAGGAGGCTTGAAACGAGATCAAAGGAGCTTA
AAGCTCTACATGCGCAAAATGAGTGTGAGAGGATGCACCTTGCGCAATACAAGAAAAAGTTACATCGTAAGATGCACACA
GTTGAGTCTTTTAACCAGGCTTTAGTAACCCAGCAAAGAAAAGGAAATGATGAGTTGGAGTGTCTAAGGGAGCGAGTAGC
ACAGTTACAGAATGAACTGGAAGCAATGGAGTCGCTCAATCGTGTTCTACTAACCAAGGAAGTAGGCAGCAACAATGAGT
TGCAAGTTGCGCGGAAAAGGCTGAAAGATGTAAGTGAGGAGCTGGTTCCAACAATGTCCGGCATATATAAATTTGGGGCT
TTTGTGCATTTCATTATATGACTATGTCACCACTAATTGCCACTGTACTTTATCTGTTCCAACACTTCCTGGCATGTATT
CGTGTGGTACTTTTGCATATATGGTTATATTATCACTATTATCCTT-GTGATCCCATCTTCGTGTTTGTAGGGGCTGCAG
AAGTTTACAAATGGACGGGCGAATATAGGGGTCAAGAGAATGGGCGAGCTTGACATGAAAGCATTTGCGAATGCTTGCAA
ACAAGATTTATCACAAGAAGATGCCCAAGTTGATTCTGTTTTTCTTTGTTCAAAGTGGCAAGCTGAAATTACAAACTCAG
AGTGGCACCCTTTTAAGATCGTCATGGTTGATGGTAAAGAGATGGTATGGAGTGTCCCTGCTATTTCTTTTACTTTTACA
T---GTATTATTCCTAGTTTTCAAGCTCAGGTAGCTTTCTTGCAGCTGAATGGTGGTGTGAGCATTCCTATCTTTTTACA
AGCATCACGAATTTCCGTGATTCCATCTGACAGTACATACATGATCTCACTATTTGGTGTAGGAAATTCTCTTAGAGGAT
GATGACAAGCTGCGGAAGTTGAAGGAAGAACATGGTGAAGAAATATGCACTTTGGTAACGAATGCACTGCTTGAAATCAA
TGAGTACAACCCCAGTGGCCGTTATGTTGTACCAGAACTGTGGAACTATAAGGATGGCCGGAAAGCAACGCTGGAAGAAG
GCATCGAGTTCATCGTGAAACAGTGGCAATCACATAA---GAAGCGCTGA------------------------------
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>chr2D_1_TraesCS2D01G261000
GGAAGGTGCATACTTTTGACTGGACCGCGCTAATCTGGAGCCTCGTGGAGGAAGAGATGTTGGAGCTTAGGAAAGGGACG
AGGTCTCACTCGGCATGCTACTACGGCGCCTACCTGCAGAAGCTCGTCTTGGTGAAGTGGCCGACTCTTTTCCGGCCGCC
GCCCAAGTCGTCATTGGGTGCGCAACACAAGAAGCCCTCCGCAATCAGCGGGAGAAACAACCGATTAACAACCAGTGAGC
TGGATTCCAAGTCCAAGATGCAAAAACTTTTTGGTGCGAGATCTATGCAGACAGAGACTCCAGCGCTAGCTACCTTAAAC
AAGCTTGATAGTACAAAGAACCTTGAGCAAGACAAAGAAAAGTTGCGTTCGACGAAGTCACTCAACGATGCTGTAGTTAC
CCCAAAAAGAAAAAACAACGATGAGTTGCAGCACCCAGAGCTGGATCCCGAGATGAAAAAGGATCTCGATGCAAAATCAA
TGCAGCCCGAAGCAAGATCTGCGGAGTTTGATGCGAGACCCATGCAGACAGAGCTTGCACCGCTAGCTACCCTGAAAGAG
CTCGATAGAAGAAACCTTGAGCAAGACAATGAAAACTTGCATTCAACAAAGTCGCTCAACAGGGCTGTAGTTACCCAAAA
AAGAAAAGGAAACGATGAGTTGCAGCACGCAGAGGTGGATCCCAAGATGAATAAGGATCTTGATGCAAAATCCATGCAGC
CCGAAGCAAGACCTGCGGAGTTTGATGTGAGACCCATGCAGACAGAGCTTGCACCACTAAAAGAGCTTGATAGAAAAAAC
CTTGAGCAAGACAATGGAAACTTGTATTCAGCCAAGTCGCTCAACGAGGCTGTAGTTACCCAAAAAAGAAAAAGGAACGA
TGAGTTGCAACACTCAGAGGTGGATCCCAAGATGAAAATGGATCTTGATGCAAAATCCATGCAGCCCGAAGCAAGATCCA
AACAACTTGACGCCAGGGACAAGCAGCCT-AGTCATGGTCTATGGATCTGGAAGCGAAATCAAAGATGTTGGATGTAAAA
TCCAAGATGATTGACGCGAGATGCAAGAAGATTGAAGCAAGATCAGCAGAGTTTGACGTGAGATCCAAGCAACTTGATGC
CAGACACTTGCAGTTTGAGGCAAGATCTATGGAGCTAGAAGTGAAATCCAGGAGGCTTGAAACGAGATCAAAGGAGCTTA
AAGCTCTACATGCGCAAAATGAGTGTGAGAGGATGCACCTTGCGCAATACAAGAAAAAGTTACATCGTAAGATGCACACA
GTTGAGTCTTTTAACCAGGCTTTAGTAACCCAGCAAAGAAAAGGAAATGATGAGTTGGAGTGTCTAAGGGAGCGAGTAGC
ACAGTTACAGAATGAACTGGAAGCAATGGAGTCGCTCAATCGTGTTCTACTAACCAAGGAAGTAGGCAGCAACAATGAGT
TGCAAGTTGCGCGGAAAAGGCTGAAAGATGTAAGTGAGGAGCTGGTTCCAACAATGTCCGGCATATATAAATTTGGGGCT
TTTGTGCATTTCATTATATGACTATGTCACCACTAATTGCCACTGTACTTTATCTGTTCCAACACTTCCTGGCATGTATT
CGTGTGGTACTTTTGCATATATGGTTATATTATCACTATTATCCTT-GTGATCCCATCTTCGTGTTTGTAGGGGCTGCAG
AAGTTTACAAATGGACGGGCGAATATAGGGGTCAAGAGAATGGGCGAGCTTGACATGAAAGCATTTGCGAATGCTTGCAA
ACAAGATTTATCACAAGAAGATGCCCAAGTTGATTCTGTTTTTCTTTGTTCAAAGTGGCAAGCTGAAATTACAAACTCAG
AGTGGCACCCTTTTAAGATCGTCATGGTTGATGGTAAAGAGATGGTATGGAGTGTCCCTGCTATTTCTTTTACTTTTACA
T---GTATTATTCCTAGTTTTCAAGCTCAGGTAGCTTTCTTGCAGCTGAATGGTGGTGTGAGCATTCCTATCTTTTTACA
AGCATCACGAATTTCCGTGATTCCATCTGACAGTACATACATGATCTCACTATTTGGTGTAGGAAATTCTCTTAGAGGAT
GATGACAAGCTGCGGAAGTTGAAGGAAGAACATGGTGAAGAAATATGCACTTTGGTAACGAATGCACTGCTTGAAATCAA
TGAGTACAACCCCAGTGGCCGTTATGTTGTACCAGAACTGTGGAACTATAAGGATGGCCGGAAAGCAACGCTGGAAGAAG
GCATCGAGTTCATCGTGAAACAGTGGCAATCACATAA---GAAGCGCTGAACCTGGGA---AGCCAGGTTTCATGCATAG
AGGGGGCGAGTTTGCTCATGGAGAGGGCCAAGCTTTCATGGAGTGAGAAAATTTGGCAGCAGCAGCCACTACCATTGAAG
AAGAAGCAGATGCTGAGGGAATTTGTCCCTGCGCTGAACCCCATTTATCTGCAGGCTTCGTGTGCTGCTTTTGCTTTCAT
ATCTTCCACCTTTAACTAGACATAGTGTGAGTTTAATGTTTTAGTGTATTAGGTAGAGGTTGGTAGTGGCTCATTGGTTG
ATACTGATTGTACAACTATATTAACCGTCATCGCCTTTCATCTTATTATTAGTTAGATCCTCTTATTGTAGAATTGGCAT
GTACTACTAGTCTAAAATGTAGATTGCCTCTTATCTTCACATATGTGATGTTTACCCTTAAGATCTGCTACATGTATGCT
CTTGTGTGTATGTGTGCTTGTGGTGG-AAAGCTTCTGTGTTAAAAAGGTCGAACTGCCTCATGGACCTTCAACTGAATAT
GCAGAAGCAGCACCATATAGATAGAATGCAGTTCCTGTGCTGGCACATGAGCTTGATGTAGAAATTGCAGTGTGGTGGAA
GTGAAACCGCCTATTGTTGTGCAATTGAACCCTGAACTGTTTTGTACAGCTAAAACATTGTGAGATGATCTGCGCGTTCT
TATGCTGTTCAGTTTTGGACTGCTGCAAGTATAAGCTTTTCTGGTTCCTGCTAATGTGGTTCTCGAATCAGTTGGGGCTT
CAGGCTTGCATTACAGGTATCTATTTTGTGTATATGTGCTTTTGTACAGATCTGGTTGCTGTATGCCACTCTTCCATTGA
TGTACATGCTACTTTCTGACGGTGATTTCATCTGTTCTGTCTAACTAACATGGAGAGTAGATAGTACACCAGGAGCATTT
AAGCTCGAGCTGATAGGAAACCAACAGAAATTGAAGTAGATGCCATCACATGAAGACTGCCAGATACGAAACCAACTGAA
ATTGACCGTAACTA
>chr2A_1
GGAAGGCGCATACTTTTGACTGGACCGCGCTGATCTGGAGCCTCGTGGAGGAAGAGATGTTCGAGCTTAGGAAAGGGACG
AGGTCCCGCTCGGCATGCTACTACGGCGCCTACCTGCAGAAGCTCGTCTTGGTGAAGTGGCCGACTCTTTTCCGGCCGCC
GCCCAAGTCGTCATTGGGTGCACAACACAAGAAGCCCTCCGCAATCAGCGGGGGAAACAAGCGGTTAACAACCAGTGAGC
TGGATTCCAAGTGCAAGATGCAAGAACTTTTTGGTGCGAGATCTATGCAGACACAGACTGCAGCGCTAGCTACCCTAAAC
AAGCTTGATAG---AAAGAACCTTGAGCAAGACAAAGAAAAGTTGCATTCGACCAAGTCACTCAACGATGCTGTAGTTAC
CCCCAAAAGGAAAAAGAACGATGAGTTGCAGCACCCAGAGCTGGATCCGGAGATGAAAAAGGATCTCGATGCAAAAACAA
TGCAGCCCGAAGCAAGATCTGCGGAGTTTGATGCGAGACCCATGCAGACAGAGCTTGCACCGCTAGCTACCCTGAAAGAG
CTCGATAGAAGGAACCTTGAGCAAGACAATGAAAACCTGGATTCAACG-AGTCGCTCAACAAGGCTGTAGTTACCCAAAA
AAGAAAAGGAAACGATGAGTTGCAGCACGCAGAGCTGGATCCCAAGATGAATAAGGATCTTGATGCAAAATCCATGCAGC
CCGAAGCAGGACCTGCGGAGTTTGATGTGAGACCCATGCAAACAGAGCTTGCACCACTAAAAGAGCTTGACAGAAAAAAC
CTTGAGCAAGACAATGGAAACTTGTATTCAGCCAAGTCGCTCAACGAGGCTGTAGTTGCCCAAAAAAGAAAAAGGAACGA
TGAGTTGCAACACTCAGAGCTGGATCCCAAGATGAAAACGGATCTTGATGCAAAATCCATGCAGCCCGAAGCAAGATCCA
AACAACTTGACACCAGGGACAAGCAGCCTCAGTCATGGTCTATGGATCTGGAAGCGAAATCAAAGATGTTGGATGTAAAA
TCCAAGATGATTGACGTGAGATGCAAGAAGATTAAAGCAAGATCAGCAGAGTTTGACGTGAGATCCAAGCAACTTGATGC
CAGACACTTGCAGTCTGAGGCAAGATCTATGGAGCTAGAAGCGAAATCCAGGAGGCTTGAAACGAGATCCAAGGAGCTTA
AAGCTCTACATGCGCAAAATGAGTGTGAGAGGATGCACCTTGCGCAATACAAGAAAAAGTTACATCGTAAGATGCACACA
GTTGAGTCTTTTAACCAGGCGTTGGTAACCCAGCAAAGAAAAGGAAATGATGAGTTGGAGCGTCTAAGGGAGCTAGTAGC
ACAGTTACAGAATGAACTGGAAGCAATGGAGTCGCTCAATCGTGTTCTACTAACCAAGGAAATAGGCAGCAACAATGAGT
TGCAAGTTGCCCGGAAAAGGCTAAAAGATGTAAGTGAGGGGTTGGTTCCGACAATGTCCGGCATATATAAATTTGGGGCT
TTTGTGCATTTCATTATATGACTATGTCACCACTAATTGCCACTGTAATTTATCTGTTCCGACACTTTCTGGCATGT---
---------------------------------CACTATTATCCTTTGTGATCTAATCTTCGTGTTTGTAGGGGCTGCAG
AAGTTTACAAATGGACGGGCAAATATAGGGGTCAAGAGAATGGGCGAGCTTGACATGAAAGCATTTGCGAATGCTTGCAA
ACAAGATGTATCACAAGAAGATGCCCAAGTTGATTCTGTTTTTCTTTGTTCAAAGTGGCAAGCTGAAATTACAAACTCAA
AGTGGCACCCTTTTAAGATCGTCATGGTTGATGGTAAAGAGATGGTATGGAGTGTCCCTGCTATTTCTTTTACTTTTACA
TGTAGTATTATTCCTAGTTTTCAAGCTCAGGTAGCTTTCTTGCAGCTGAATGGTGGCGCGAGCATTCCTATCTTTTTACA
AGCATCACAAATTTCCGTGATTCCATCTGACAGCACATACATGATCTCACTATTTGGTGTAGGAAATTCTCTTAGAGGAT
GATGACAAGCTGCAGAAGTTGAAGGAGGAACATGGTGAAGAAATATGCACTTTGGTAACGAATGCACTGCTTGAAATCAA
TGAGTACAACCCCAGTGGCCGTTATGTTGTACCAGAGCTGTGGAACTATAAGGATGGCCGGAAAGCAACACTGGAAGAAG
GCATCGAGTTCATCCTGAAACAGTGGCAATCACATAAGAGGAAGCGGTGAACCTGGGACGAAGCCAGGTTTCACGCATAG
AGGGGGCGAGTTTGCTCATGGAGAGGGCCAAGCTTTCATGGAGTGAGAAAAATTGGCAGCAGCAGCCACTACCATTGAAG
AAGAAGCAGATGCTGAGGGAATTCGTCCCTGCGCTGAACCTCATTTATCTGCAGGCTTCGTGTGCTGCTTTTGCTTTCAT
ATCTTCCACCTTTAACTAGACATAGTGTGAGTTTAGTGTTTTAGTGTATTAGGTAGAGGTTTGTAGTGGCTCATTGGTTG
ATACTGATTGTGCAACTATATTAACCGTCATCACCTTTCATCTTATTATTAATTAGATCCTC-TATTGTAGAATTGGCAT
GCACTGCTACTCTAAAATGTAGATTGCC--------TCACATATGTGATGTTTACCCTTAAGATCTGCTACATGTATGCT
CTTGTGTGTATGTGTGCGTGTGGTGGGAAAGTTTCGGTGTTACAAAGGTCGAACTGCCTCATGGACCTTCAACTGAATAT
GCAGAAGCAGCACCACATAGATAGAATGCAGTTCCTGTGCTGGCACATAAGCTTGATGTAGAAATTTCAGTGTGGTGGAA
GTGAAACCACCTTTTGTTGTGCAATTGAACCCTGAACTGTTTTGTACAGCTAAAACATTGTCAGATGATCTGCGCGTTCT
TATGGTGTTCAGTTTTGGACTGCTGCAAGTATAAGCTTTTCCAGTTCCTGCTAATGTGAATCTCAAATCAATTGCGGCTT
CAGGCTTGCATTACAGGTATCGATCTTGTGTATATGTGCTTTTGTACTGATTTGGTTGCTGTATGCCACTCTTCCATTGA
TGTACATGCTACTTTCTGACGGTGATTTCATCTGTTCTGTCTAACTAACATGGAGAGTAGATGGTACACCAGGAGCATTT
GAGCTCGAGCTGATAGGAAACCAACTGAAATTGAAGTAGATGCCATCACATGAAGACTGCCAGATACGAAACCAACTGAA
ATTGACCGTAACTA
>SNPs
------S------------------------S-----------------------------S------------------
-----S-S------------------------------------------------------------------------
---------------------S------------------------------S-------S--S----------------
------------S----------S-----------------------------S-----S--------------S-----
-----------SSS--------------------------------S------S--------------------------
---S-----S-----S--------------------------------S---------------------------S---
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-----------S------------------------S--S-------SS------------S------------------
----------------------------------S---------------------------------------------
--------S-------------------------------S-----------------------------S---------
---------------------------------------------------------S----------------------
-------------------S------------------S-----------------------------------------
-----------S--------------------------------------------------------------------
----------------S----------------S----------------------------------------------
--------------S--------------------------S---------------------------S----------
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--------------------S--S------------------------------------S------------S------
-------------------------------------------------------------S------------------
----------S-----------S----------------S-S-------S------------------------------
-----------------------------------------------S------------S------S---------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------SS-------------------------
--------------------S-----------------------------------------------------------
-------S-----------------------------------------------------------------------S
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--------------------------------------------------------S-S---------------------
--------S------------------------S----------------------------------------------
-------------S------------S-----------------------------------------------------
------------------------------------S--------------------------------S----------
--------------S-------------------------------S--------------------------S------
---------------------------------------------------S----------------------------
-----------------------S----------------S---------------------------------------
-----------------------------------S-------------------------S------------------
-----------S--------------------S------------------S----------S-----------------
-S---S---S------------------SSSSSSSS--------------------------------------------
-----------------S-------------S---S------S-------------------------------------
---------------S--------------------------------S-----------------S-------------
--------S---S------------------------------------------------S------------------
----S------------------------------------SS---------------SS----S-----S---S-----
---------------------S--S----------------------S---S----------------------------
--------------------------------------------------------------S-----------------
S------------------------S------------------------------------------------------
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>forward_88
--------------------------------------------------------------------AGGAAAGGGACG
AGGTCTCA------------------------------------------------------------------------
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>reverse_1482
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-----------------------------------------CTGGTTCCAACAATGTCCGG-------------------
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>forward_1354
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------------------------------------------------------TTGGAGTGTCTAAGGGAGCG------
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>reverse_2230
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---------------------------------------------------------------------GCTGGAAGAAG
GCATCGAGT-----------------------------------------------------------------------
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>forward_2107
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-------AGCTGCGGAAGTTGAAGGAA-----------------------------------------------------
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>reverse_3035
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--------------------------------------------------------------------------GGGCTT
CAGGCTTGCATTAC------------------------------------------------------------------
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