>input_sequence_55538
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--------------------------------------------------------------------ATGATAATGTCA
TGTCAGAAAATTGGCTTGGCAAGAACAGAGCACTTACCCGTGATGTACCTCGACGAGAGCTGCGCGGCAATGACGAGCGC
GCGGTCCTGGATCCTCACACCATGGTGGCCCTCGTACTTCTCCTTGAGCCCTCTCAGTATGCTGACGGTGTCGGGGACGC
TGGGCTCCGCCACGAACACC--TGCTGGAACCGCCTCTCGAACGCCGCGTCCTTCTCCACGTACTTCCTGTACTCCTCGA
GGGTCGTGGCGCCGATGCACCTGAGCTGCCCCCTCGCCAGCATCGGCTTGAACAGGTTGGCGGCGTCCATGGACCCCTCC
GTCCGCCCGGC----GCCGAGCACCAGGTGTATCTCGTCGATGAACAGGATCACCTTCCCCTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCCACGAGCGCGCCCATGTCCAGCGCCACC
AGGCGCACGTCCAGGAGGTTGCTGGGGACGTCGCCGCGCACGACGCGCTGCGCGAGCCCCTCCACGACGGCGGTCTTGCC
CACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTGGTGCGCCGCGACAGGATCCGCACCACGCGCCGGATCTCCTCGT
CGCGGCCGATGACCGGGTCCAGCTTGCCG------GCCACCTCCACCAGGTCGCGGCCGTACGTCTTGAGGGCCTGGAAG
TTGGTGTCCCCCGACGCCGACTCCAC---GCGCCGGTTGTCGCCTCCCCGGAGCTTCTCCACCTCGGCCTTCACCCGCGC
GGCGGAGATACCGGCCTCCTTGAGCGCGTCGGAGAT------CTGCGCGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCGCCGCGCGACTTCTGCGCCGACTGCGCGCGGCGGACGGCCTTGACCAGCGAGGTGGAGGCCGGG
ACGGTGTCGGGCGGCGGGGACTGCG------------------AGGGCAGCCGCTTGAGCGCGGCGG-------------
-----------ACGCGACGCGCTCGAACGAATCGGCCGCGGCGTCGTTGCCGCCGGACGCGTGGGCGATGGCCTGGCGGA
GGATGCCCGACCTGTCCGCCGCGAGCGCCGCGGCGAGGTGCAGCGGCGTGAGCTGCGCGTGGCCGGCCTCGGACGCCATC
TCGTGCGCCGCCGCGAGCGCCTCATTGGTCTTGTGCGTGAACTTGTCGGGATTCATGTCTTCCTCTTCTGCGAGCTACGG
ATTAACCGCAACGGAACTGGCAATGGTGATTGGGGGGGATTCGTTGGTTGGATGA-------------------------
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>chr3A_1_TraesCS3A01G274500
GCTGCTCAGCTAGAGCCTTTGCGAGCTCGGTTTTACCCACACCGGTCGGTCCGAGGAAGAGGAATGAACCAGTAGGCTGC
TGTGGCCGCCCAAGGCCAGCCCTCGACCGCAAAACAGCCTCTCCGACCGCATTGACGGCCTCATACTGTCCAACCACCCT
CTGATGCAGTCTGTCAGCAAGCCCGATCAGCCTCGCCTTCTCATTCTGCCCGAGCCTGGTGACAGGAATGCCAGTCCAGC
GGCTCACCACCTGCATATGCAAAGAGATCGTCTCAATACAACATCGTTCGTACCTGA--AGTGAAGAACACCATAAAATT
GTTTGCAACAACGAACTTACCTCGGCAATCTGGTCCGGGCCGACAGTCTCTGTTAACATCAAGTTCTCGCCGGTCTCACC
CTCCAGCTTAGCAATGGCAGCGTCAACCTCCTGCAGAGCACCGTATCTGAGATCAGCCACGCGGGCCAAGTCCATCCGGC
GCTCGGCCTCCTGCAGAGTGAACTGCAGCTCTTCGCGGCGCTGCTTCAGGCTCCTGATCTCGTCGATCCTCTCTTTCTCC
TTGCGGTACTTCATCTGCAGCGGCTGCAGCTTGTCTCGCAGATCGTCCAACTCTTTCCTCACCTGAAACAGTTCC-AGTT
TTTGAACATCGTCAGAACAGAGCAGGTACAGT-----GCAGTTTTTGCACATTGTCAGAACGAAGCAACTAGACTGATA-
---------AAATCAAGATCACCAATTCATCA-GTTACTCACATCAACTAACCGAGCTTTGCTAGCCTTGTCCTTCTCCT
TCTCGAGGGCATGGAGCTCGACTTCCAACTGGATTCTCTTCCTCTCGAGGTTGTCAATCTCTTCAGGCTGGCTGTCAAGC
TGCACCCTCACATTTGCACAGGCCTCGTCGACCAAATCGATTGCTTTATCAGGCAAATGACGACCTGTAACAAAACG--A
AAACAAAACAGCGATTTAAGACCAACG-------AAGGCAAAAACTCTGCAAATTTGACCACGCAGAAATGATAATGTCA
TGTCAGAAAATTGGCTTGGCAAGAACAGAGCACTTACCCGTGATGTACCTCGACGAGAGCTGCGCGGCAATGACGAGCGC
GCGGTCCTGGATCCTCACACCATGGTGGCCCTCGTACTTCTCCTTGAGCCCTCTCAGTATGCTGACGGTGTCGGGGACGC
TGGGCTCCGCCACGAACACC--TGCTGGAACCGCCTCTCGAACGCCGCGTCCTTCTCCACGTACTTCCTGTACTCCTCGA
GGGTCGTGGCGCCGATGCACCTGAGCTGCCCCCTCGCCAGCATCGGCTTGAACAGGTTGGCGGCGTCCATGGACCCCTCC
GTCCGCCCGGC----GCCGAGCACCAGGTGTATCTCGTCGATGAACAGGATCACCTTCCCCTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCCACGAGCGCGCCCATGTCCAGCGCCACC
AGGCGCACGTCCAGGAGGTTGCTGGGGACGTCGCCGCGCACGACGCGCTGCGCGAGCCCCTCCACGACGGCGGTCTTGCC
CACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTGGTGCGCCGCGACAGGATCCGCACCACGCGCCGGATCTCCTCGT
CGCGGCCGATGACCGGGTCCAGCTTGCCG------GCCACCTCCACCAGGTCGCGGCCGTACGTCTTGAGGGCCTGGAAG
TTGGTGTCCCCCGACGCCGACTCCAC---GCGCCGGTTGTCGCCTCCCCGGAGCTTCTCCACCTCGGCCTTCACCCGCGC
GGCGGAGATACCGGCCTCCTTGAGCGCGTCGGAGAT------CTGCGCGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCGCCGCGCGACTTCTGCGCCGACTGCGCGCGGCGGACGGCCTTGACCAGCGAGGTGGAGGCCGGG
ACGGTGTCGGGCGGCGGGGACTGCG------------------AGGGCAGCCGCTTGAGCGCGGCGG-------------
-----------ACGCGACGCGCTCGAACGAATCGGCCGCGGCGTCGTTGCCGCCGGACGCGTGGGCGATGGCCTGGCGGA
GGATGCCCGACCTGTCCGCCGCGAGCGCCGCGGCGAGGTGCAGCGGCGTGAGCTGCGCGTGGCCGGCCTCGGACGCCATC
TCGTGCGCCGCCGCGAGCGCCTCATTGGTCTTGTGCGTGAACTTGTCGGGATTCATGTCTTCCTCTTCTGCGAGCTACGG
ATTAACCGCAACGGAACTGGCAATGGTGATTGGGGGGGATTCGTTGGTTGGATGATTCGCCTTGGTGTCTTCTTCTCGTC
GGAAATTGCTGGGGGG--ATCGGAGATGAGACGGGTAATAAGAGGCGGGAGGGGAGGATTCGCCGGAGGTCTAGAACGGC
GTGGAAGCGGCGGGAAGGCGGCGAGTTAGGGG-GACAAGAATGTCCCAGAACATTCTAGTGTGGAACCGTTTTATTTGGA
AAACCCGAAACCGTGCGCATTACTGTATCTCCTATCGCACGAGACAGTATCCCGACCGTTGGTTCCGATTTCATGCCTTC
CTCTGTGCCCTGCAACTATGGACATGAAATTCCCTTAAAAAACTATGGACATGAAGTACAATTTCTGAAGGAAAATGCTT
GGTATCATCCGACGGCCT----------CCTCTGCAATCGTCAGATTAACTTTTAATCGTGCG--GCAC---ACAATTCT
TATTATACGCATGAGCTTTGTAACATGGCTCTTGTTGTGA---AGGTTGCTTCTGCGGCAGGGACCGTGTTGCAAAACCC
AAT--CCGATTGTACGGCACGTGCCTACAT--------------------------------------------------
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----------AGGACCCGCAGCCGCTCTCCCATTCTTATCTTCTTATCCCAGACGAAAAGAGCAAAACCACATATTTTTC
CTTGAACCTCGTCTCCTACCTCCAGGCCCCTTTCATGGATGTAAATCCCCCAAGCACGCATCCAAATCATGTGCCATTCG
TGAGAAGAGAGAGCACCCATAGCGAAACCTAGCTGTTGTAAAACTCCTGCGAGCTTGGGGAGAGGGGTGAAGCTTGTGTT
GTTTATCGCGCCCTCGCTCGCTGCCCCATCCCCACGTCGCACC-GGGGACCTTACCCAGCTACCGTGCAACGTTCACCGC
GGCCCTCACCGCTAGC-GTGGTGTTGCGAGACGAGTTCCCGCAACAACGACTTTGTTGCAAATGGTGGTGGCGAACAATC
ACTAATTGCAAGGGGATTTTT------TTTCTACAACAGGCTTCTTGTTGTAGAGGGAGAA--CACAACA----CAAAGG
AGGCAACAACGAAGTTTTTTTTTCTGTAACAG
>chr3B_1
GCTGCTCAGCTAGAGCCTTGGCGAGCTCGGTTTTACCCACACCGGTCGGCCCGAGGAAGAGGAATGAACCAGTAGGCTGC
TGTGGCCGTCCAAGGCCAGCCCTCGACCGCAAAACAGCCTCTCCGACTGCATTGACGGCCTCATACTGTCCAACCACCCT
CTGATGCAGTCTATCAGCCAGACCGATCAGCCTGGCCTTCTCATTCTGTCCCAGCCTAGTGACAGGAATGCCAGTCCAGC
GGCTCACCACCTGCGTATGCAAAGAGATTGTCTCAATACAACATCGTTCATACCTGAAGAGTGAACAACACCATAAAATT
GATTGCAACAACGAACTTACCTCGGCAATCTGGTCCGGGCCGACAGTCTCTGTTAACATCAGGTTCTCGCCGGTCTCACC
CTCCAGCTTAGCGATGGCAGCATCAACCTCCTGCAGAGCACCGTATCTGAGATCAGCCACGCGGGCCAAATCCATCCGGC
GCTCGGCCTCCTGCAGAGTGAACTGCAGCTCTTCGCGGCGCTGCTTCAGTCTCCTGATCTCGTCGATCCTCTCTTTCTCC
TTGCGATACTTCATCTGCAGCGGCTGCAGCTTGTCTCGCAGATCGTCCAACTCTTTCCTCACCTGAAACAGTTCCGAGTT
TTTGCACATTGTCAGAACAGAGCAGGCACAGT-----GCAGTTTTTGCACATTATCAGAACGAATCAGCTACACTGATA-
---------AAATCAAGATCACCAAATTCACCGGTTACTCACATCAACTAGCCGAGCTTTGCTAGCCTTGTCCTTCTCCT
TCTCGAGGGCATGGAGCTCGACTTCCAACTGGATCCTCTTCCTCTCGAGGTTGTCGATCTCTTCAGGCTGGCTGTCAAGT
TGCACCCTCACATTTGCGCAGGCCTCGTCAACCAAATCGATTGCTTTATCAGGCAGATGACGACCTGTAACAAAAGGAAA
AATATCG---TCGATTTAAGACCGGAGATCAATCAATGCAAAAACACTGCAAAATTGACCGTGCAGAAATCACA-----A
TGTCAGAAAATTGGCTTGGCAAGAACAGAGCACTTACCCATGATGTACCTCGACGAGAGCTGCGCGGCAATGACGAGCGC
GCGGTCCTGAATCCTCACACCATGGTGCCCCTCGTACTTCTCCTTGAGCCCTCTCAGTATGCTGACGGTGTCGGGGACGC
TGGGCTCTGCCACGAACACC--TGCTGGAACCGCCTCTCGAACGCCGCGTCCTTCTCCACGTACTTCCTGTACTCCTCGA
GGGTCGTCGCGCCAATGCACCTGAGCTGCCCCCTCGCCAGCATCGGCTTGAACAGGTTGGCCGCGTCCATGGACCCCTCC
GTCCGCCCGGC----GCCGAGCACCAGGTGTATCTCGTCGATGAACAGTATCACCTTCCCCTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCCACGAGCGCGCCCATGTCCAGCGCGACC
AGGCGCACGTCCAGGAGGTTGCTGGGGACGTCGCCGCGCACGACGCGCTGCGCGAGCCCCTCCACCACGGCGGTCTTGCC
CACGCCGGGCTCGCCGATCAGGACGGGGTTGTTCTTGGTGCGCCGCGACAGGATCCGCACCACGCGCCGGATCTCCTCGT
CGCGGCCGATGACCGGGTCCAGCTTGCCC------GCCACCTCCACGAGGTCGCGGCCGTACGTCTTGAGGGCCTGGAAG
TTGGTGTCCCCCGACGCGGACTCCAC---GCGCCGGTTGTCGCCTCCCCGGAGCTTCTCGACCTCTGCCTTCACCCGCGC
GGCGGAGATGCCGGCCTCCTTGAGCGCGTCGGAGAT------CTGTGGGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCGCCGCGCGACTTCTGCGCCGACTGCGCGCGGCGGACGGCCTTGACCAGCGAAGTGGAGGCCGGG
ACGGTGTCGGGCGGCGGGGACTGCG------------------AAGGCAGCCGCTTGAGCGCTGCGG-------------
-----------TCGCGACGCGCTCGAACGACTCGGCCGCGGCGTCGTTGCCGCCGGACGCGTGGGCGATGGCCTGGCGGA
GGATGCCCGACCTGTCCGCCGCGAGCGCCGCGGCGAGGTGCAGCGGCGTGAGCTGCGCATGGCCGGCCTCGGACGCCATC
TCGTGCGCCGCCGCGAGCGCCTCATTGGTCTTGTGCGTGAACTTGTCGGGATTCATGGCTTC-GCTTCTGCGAACTACGG
ATTAACTGCAACGGAACTGGCAATGGTGATTTGGGGGGATTCGTTGGTTCGATGATTCGCCTTGGTGTCTTCTTCTCGTC
GGAAATTGTTGGGGGGAGATCGGAGATGAGATGGGTAATAAGAGGCGGGAGGGGAGGATTCGCCGGAGGTCTAGAACGGC
GTGGAAGCGGCGGGAAGGGGGCGAGTTAGGGGGGACAAGAATGTCCGAGAACATTCTAGTGTGGAACCGTTTTATTTGGG
AAAACCGGAACCGTGCGCGTTACTGTATCTACTATCACACGAGACAGTATCCTGACCGTTGGTTCCGATTTCATGCCTTC
C-------------------------------------------------------------------------------
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--------------------------------
>chr3D_1
GCTGCTCAGCTAGAGCCTTGGCGAGCTCGGTTTTTCCGACACCGGTCGGTCCAAGGAAGAGGAATGAACCAGTAGGCTGC
TGCGGGCGTCCAAGGCCAGCCCTCGACCGTAGAACAGCCTCTCCAACTGCATTGACGGCCTCATACTGTCCAACGACCCT
CTGATGCAGTCGATCTGCCAGCCCGATCAGCCTCGCCTTCTCATTCTGTCCGAGCCTGGTGACAGGAATACCAGTCCAGC
GGCTCACCACCTGCGTATGCAAAGAGATCGTCTCAATACAACATCGTTCATACCTGAAGAGTGAAGAACCCCATAAAATT
GTTTGCAACAACGAACTTACCTCAGCAATCTGGTCCGGGCCGACAGTCTCTGTTAACATCAAATTCTCGCCGGTCTCACC
CTCCAGCTTAGCAATGGCAGCGTCAACCTCCTGCAGAGCACCGTATCTGAGATCAGCCACGCGGGCCAAATCCATCCGGC
GCTCGGCCTCCTGCAGAGTGAACTGCAGCTCTTCGCGGCGCTGCTTCAGGCTCCTGATCTCGTCGATCCTCTCTTTCTCC
TTGCGATACTTCATCTGCAGCGGCTGCAGCTTGTCTCTCAGATCGTCCAACTCTTTCCTCACCTGAAACAGTTCCGAGTT
TTTGCACATTGTCAGAACAGAGCAGGTACAGTACAGTGCAGTTTTTGCATATCGTCAGAACAAAAGCAACTTCATTAGAC
AGATTAGAGAAATCAAGACCACCAATTCACCA-GCCACTCACATCAACTAGCCGAGCTTTGCTAGCCTTGTCCTTCTCCT
TCTCGAGGGCATGGAGCTCGACTTCCAACTGGATCCTCTTCCTCTCGAGGTTGTCGATCTCTTCAGGCTGGCTGTCAAGT
TGCACCCTCACATTTGCGCAGGCCTCGTCAACCAAATCGATTGCTTTATCAGGCAAATGGCGACCTGTACACAAAATAAA
AAGCAGAACATCGATTTAAGACCGGCGATCAA----GGTAAAAACTCTGCAAAATTGACAGTGCAGAAATCATA-----A
--------AATTGGCTAGGCAAGAACAGAGCACTTACCCATGATGTACCTCGACGAGAGCTGCGCGGCAATGACGAGCGC
GCGGTCCTGAATCCTCACGCCATGGTGCCCCTCGTACTTCTCCTTGAGCCCTCTGAGTATGCTGACGGTGTCCGGGACGC
TGGGCTCCGCCACGAACACC--TGCTGGAACCGCCTCTCGAACGCGGCGTCCTTCTCGACGTACTTCCTGTACTCCTCGA
GGGTCGTCGCGCCAATGCACCTGAGCTGCCCCCTCGCCAGCATCGGCTTGAACAGGTTGGCCGCGTCCATTGACCCCTCC
GTCCGCCCGGC----GCCGAGCACCAGGTGTATCTCGTCGATGAACAGTATCACCTTCCCCTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCCACGAGCGCGCCCATGTCGAGCGCGACC
AGGCGCACGTCCAGGAGGTTGCTGGGGACGTCGCCGCGCACGACGCGCTGCGCGAGCCCCTCCACCACGGCGGTCTTGCC
CACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTTGTGCGCCGCGACAGGATCCGCACCACGCGCCGGATCTCCTCGT
CGCGGCCGATGACCGGGTCCAGCTTGCCC------GCCACCTCCACGAGGTCGCGGCCGTACGTCTTGAGGGCCTGGAAG
TTGGTGTCCCCCGACGCGGACTCCAC---GCGCCGGTTGTCGCCTCCCCGGAGCTTCTCGACCTCGGCCTTCACCCGCGC
AGCGGAGATGCCGGCCTCCTTGAGCGCGTCGGAGAT------CTGCGGGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCGCCGCGCGACTTCTGCGCCGACTGCGCGCGGCGGACGGCCTTGACCAGCGAGGTGGAGGCCGGG
ACGGTGTCGGGCGGCGGGGACTGCG------------------AGGGCAGCCGCTTGAGCGCGGCGG-------------
-----------ACGCGACGCGCTCGAACGACTCGGCCGCGGCGTCGTTGCCGCCGGACGCGTGGGCGATGGCCTGGCGGA
GGATGCCCGACCTGTCCGCCGCGAGCGCCGCGGCGAGGTGCAGCGGCGTGAGCTGCGCGTGGCCGGCCTCGGACGCCATC
TCGTGCGCCGCCGCGAGCGCCTCATTGGTCTTGTGCGTGAACTTGTCGGGATTCATGGCTTCCGCTTCTGCGAGCTACGG
ATTAACTGCAACGGAACTGGCAATGGCGATTGGGGGG----------------GATTCGCCTTGGTGTCTTCTTCTCGTC
GGAAATTGCTGGGGGGAGATCGGAGATGAGATGGGTAATAAGAGGCGGGAGGGGAGGATTCGCCGGAGGTCTAGAACGGC
GTGGAAGCGGCGGGAAGGGGGCGAGTTAGGGGGGACAAGAATGTCCGAGAACATTCTAGTGTGGAACCGTTTTATTTGAA
AAACCCGGAACCGTGCGCACTACTGTGTCT--------------------------------------------------
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>chr1D_1049
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------------------------------------CCCATGATGTACCTCGCCGAGAGCTGCGCCGCGACGACGATGGC
GCGGTCCTGGATGCGCACGCCGTGGTGCCCCTCGTACTTCTCCTTGAGCCCTCGCAGGATGCTGATGGTGTCGGCGACGC
TCGGCTCGGCCACGTACACC--TGCTGGAACCGCCGCTCGAACGCGGCGTCCTTCTCGACGTACTTGCGGTACTCCTCCA
GCGTGGTGGCGCCGATGCACCGGAGCTGGCCCCTGGCGAGCATCGGCTTGAACAGGTTGGCGGCGTCCATGGACCCCTCC
GTCCTCCCGGC----GCCGAGGACGAGGTGTATCTCGTCGATGAAGAGGATGACCTTGCCCTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCGACGAGCGCGCCCATGTCGAGCGCGACG
AGGCGGACGTCGAGCAGGTTGCTGGGCACGTCCCCGCGCACGACGCGCTGCGCGAGGCCCTCCACGACGGCCGTCTTGCC
CACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTTGTGCGGCGGGAGAGGATGCGCACGACGCGGCGGATCTCCTCGT
CGCGGCCGATGACGGGGTCGAGCTTGCCG------GCCACCTCGACGAGGTCGCGGCCGTACGTCTTGAGCGCCTGGAAG
TTGGTGTCGCCGGAGGCGGACTCGACCTTGCGCGAGTTGTCCCCGCCGCGGAGCTTCTCGAGCTCGGCGCGCACCCGCGA
GGCGGACACGCCGGCCTCCTTGAGGCAGTCGGCGAT------CTGCGCGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCCCCGCGCTTCTTCTGCGCGGACTGCGCGCGCCGGATGGCCTTGATGAGCGCCGTGGAGGCCGGC
ACGGAGTCCGGCGGGGGGGACTGCG------------------ACGGCAGCTTCTTGAGCGCGCCGG-------------
-----------AGAGCACGCGCTCGAACGAGTCCCCCGCGGACGCGTTCCCGCCGGACGCCCCCGCGACCGCCTGGCGCA
GTATGCCCGACTTGTCCGCCGCCAGCGCCGCCGCCAGGTGCAGCGGCGTGATCTGCGCGTGGCCGGCCTCCGACGCCGCC
TCGTGCGCCGCCACCAGCGCCTCGTTGGTCTTGTGCGTGAAGTTGTCCGGGTTCATG-----------------------
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>chr1B_1049
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------------------------------------CCCATGATGTACCTCGCCGAGAGCTGCGCCGCGACGACGATGGC
GCGGTCCTGGATGCGCACGCCGTGGTGCCCCTCGTACTTCTCCTTGAGCCCTCGCAGGATGCTGATGGTGTCGGCGACGC
TCGGCTCGGCCACGTACACC--TGCTGGAACCGCCGCTCGAACGCGGCGTCCTTCTCGACGTACTTGCGGTACTCCTCCA
GCGTGGTGGCGCCGATGCACCGGAGCTGGCCACGCGCGAGCATCGGCTTGAACAGGTTGGCCGCGTCCATGGACCCCTCC
GTCCTGCCGGC----ACCGAGGACGAGGTGTATCTCGTCGATGAAGAGGATGACCTTGCCGTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCGACGAGGGCGCCCATGTCGAGCGCGACG
AGGCGGACGTCGAGCAGGTTGCTGGGCACGTCCCCGCGCACGACGCGCTGCGCGAGGCCCTCCACGACGGCCGTCTTGCC
CACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTGGTGCGGCGCGAGAGGATGCGCACGACGCGGCGGATCTCCTCGT
CGCGGCCGATGACGGGGTCGAGCTTGCCG------GCCACCTCGACGAGGTCGCGGCCGTACGTCTTGAGCGCCTGGAAG
TTGGTGTCGCCGGAGGCGGACTCGACCTTGCGCGCGTTGTCCCCGCCGCGGAGCTTCTCGAGCTCGGCGCGCACCCGCGA
GGCGGACACGCCGGCCTCCTTGAGGCAGTCGGCGAT------CTGCGCGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCCCCGCGCTTCTTCTGCGCCGACTGCGCGCGGCGGATGGCCTTGATGAGCGCCGTGGAGGCCGGC
ACGGAGTCCGGCGGCGGCGACTGCG------------------ACGGCAGCTTCTTGAGCGCGGCGG-------------
-----------AGAGCACGCGCTCGAACGAGTCCCCCGCGGACGCGTTCCCGCCGGACGCCCCCGCCACCGCCTGCCGCA
GGATGCCCGACCTGTCCGCCGCCAGCGCCGCCGCCAGGTGCAGCGGCGTGATCTGCGCGTGGCCGGCCTCCGACGCCGCC
TCGTGCGCCGCCACCAGCGCCTCGTTGGTCTTGTGCGTGAAGTTGTCCGGGTTCATG-----------------------
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>chr1A_1049
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------------------------------------CCCATGATGTACCTCGCCGAGAGCTGCGCCGCGACGACGATGGC
GCGGTCCTGGATGCGCACGCCGTGGTGCCCCTCGTACTTCTCCTTGAGCCCTCGCAGGATGCTGATGGTGTCGGCGACGC
TCGGCTCGGCCACGTACACC--TGCTGGAACCGCCGCTCGAACGCGGCGTCCTTCTCGACGTACTTGCGGTACTCCTCCA
GCGTGGTGGCGCCGATGCACCGGAGCTGGCCCCTGGCGAGCATGGGCTTGAAGAGGTTGGCCGCGTCCATGGACCCCTCC
GTCCTCCCGGC----GCCGAGGACGAGGTGTATCTCGTCGATGAAGAGGATGACCTTGCCGTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGCCGGCGACGAGCGCGCCCATGTCGAGCGCGACG
AGGCGGACGTCGAGCAGGTTGCTGGGCACGTCCCCGCGCACGACGCGCTGCGCGAGGCCCTCGACGACGGCCGTCTTGCC
GACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTGGTGCGGCGCGAGAGGATGCGCACGACGCGGCGGATCTCCTCGT
CGCGGCCGATGACGGGGTCTAGCTTGCCG------GCCACCTCGACGAGGTCGCGGCCGTACGTCTTGAGCGCCTGGAAG
GTGGTGTCGCCGGAGGCGGACTCGACCTTGCGCGAGTTGTCCCCGCCGCGGAGCTTGTCGAGCTCGGCGCGCACCCGCGA
GGCGGACACGCCGGCCTCCTTGAGGCAGTCGGCGAT------CTGCGCGTCCTCGAGGAGGCCCATGAGCAGCTGGTCGA
CGGCGAGGTGCGAGTCCCCGCGCTTCTTCTGCGCCGACTGCGCGCGGCGGATGGCCTTGATGAGCGCCGTGGAGGCCGGC
ACGGAGTCCGGCGGCGGCGACTGCG------------------ACGGCAGCTTCCTGAGCGCGCCGG-------------
-----------CGAGCACGCGCTCGAACGAGTCCCCCGCGGACGCATTCCCGCCGGACGCCCCCGCGACGGCCTGCCGCA
GGATGCCCGACTTGTCCGCCGCCAGCGCCGCCGCCAGGTGCAACGGCGTGATCTGCGCGTGGCCGGCCTCCGACGCCGCC
TCGTGCGCCGCCACCAGCGCCTCGTTGGTCTTGTGCGTGAAGTTGTCCGGGTTCATG-----------------------
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>chr4B_1050
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-------------------------------------CCGTGATGTATCTTGACGAGAGCTGCGCGGCTACCACCAATGC
ACGGTCCTGTATGCTTACACCATGGTGCCCCTCGTACCTCTCCTTGAGCCCCCTCAGTATGCTCACGGTGTCGTTCACGC
TGGGCTCTGCCACAAAGACT--TGCTGGAACCGCCTCTCGAACGCCCCGTCCTTCTCAACGTACCTCCTGTACTCGTCCA
GCGTCGTCGCGCCAATGCACCTCAGCTGGCCCCGGGCGAGCATCGGCTTGAAAAGGTTGGCCGCGTCCATGGCCCCCTCC
ATCCTCCCGGC----GCCGAGCACTAGGTGTATCTCGTCGATGAACAGTGTCACCTTCCCCTCGGCCTCCTCCACCTCCT
TCAGCACGGCCTTGAGCCGCTCCTCAAATTCGCCACGGTACTTGGCGCCGGCCAGGAGCATGCCCATGTCCAGCTCCACG
AGGCGCACGTCGCGGAGGTTGCTCGGCACGTCGCCGCGCATGATGCGCAGAGCGAGTCCCTCCACCACGGCGGTCTTGCC
CACGCCGGGCTCGCCGATGAGGACGGGGTTGTTCTTAGTGCGCCGCGACAGGATGCGCACCACGCGGCCGATCTCCTCGT
CGCGGCCGATGACGGGGTCGAGCTTGCCCGCGCCAGCCACGTCGACCAGATCGCGGCCATACGTCTTGAGGGCCTGCAAG
TTGGTGTCTCCCGAAGCGGAATCAAC---GCGCCGGTTGTCGCCTCCACGGAGCTTCTCCACCTCATCCTTGACCCGCGC
GACGGGCACGCCGGCTTCGTTGAGCGCGTCGGAGAT------GTGCGCGTCCTGAAGGAGGCCGACAAGCAGCTGGTGGA
CACCGAGGTGGGAGTCACCTAGCGACATCTGCGCCGACTGGGCGCGGCGGATGACCTTGAACAGCGAGGTGGACGCTTGG
ACGGTGTCCCGCTCCCGCTCCCGCGGCTGGGAGAGGGGCGGCGAAGGCAACCCCCTGAGCGCGGTTGCCACGACGCGCTC
GAACGATTTGCC------------------------CGCGTCGTCGCTGCCATCTGAGGCATGGGCGATGGCCTGCCGTA
GGATGCCGGACCTGTCCTTGGCCAGCACCGCGGCGAGGTGGAGCGGCGTCAACTCCTCGTGGCCGGCCTCTGACGCCACC
TCGTGCGCAACATTGAGCGCCTCATTGGTCTTGTAGGTGAACATGTTGGGATCCATG-----------------------
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>chr1B_1108
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---------------CACACCGTGGTGCCCCTCGTACTTCTCCTTGAGCCCCCTGAGGAAGCTGATGGTGTCGACGACGC
TCGGCTCTGCGACGTACACCTGTGCTTGAACCGCCGCTCGAACGCGGCGTCCTTCTCCACGTACTTGCGGTACTCCTCCA
GCGTGGTGGCGCCGATGAACCGGAGCTGGCCCCGCGCGAGCATCGGCTTCAACAGGTTGGCCGCGTCCATGGACCCCTCC
GTCCTCCCGGCCGGCGCCGAGGACGAGGTATATCTCGTCGATGAAGAGGATCACCTTGCCCTCGGCCTCCTCCACCTCCT
TGAGCACGGCCTTGAGCCGCTCCACGAACTCGCCG---------------GCGACGAGCGCGCCCTTGTCGAGCGCAACG
AGGCGGACGTCGAGCAGGTTGCTGGGCACGTCCCCGCGCACGACGCGCTGCGCGAGGCCCTCGACGACGGCCGTCTTGCC
GACCTCGGGCTCGCCGATGAGGACCGGGTTGTTCTTGGTGCGGCGCGCGAGA----------------GGACCTCCTCGT
CGCGGCCGATGACGGGGTCGAGCTTGCCG------GCCACCTCGACGAGGTCGCGGCCGTACGTCTTGAGCGCCTGGAAG
TTGGTGTCGCCGGAGGCGGACTCGACCTTGCGCGAGT---CCCCGCCGCGGAGCTTCTCCAGCTCGGCACGCACCCGCGA
GGCGGACACGCCGGCCTCCTTGAGGCAATCGGCGACCTGCGACTGCGAGTCCTCCAGGAGGCCCATGAGCAGCTGGTCGA
CGGTGAGGTGCGAGTCCCCGCGCTTCTTCTGCGCGGACTGCGCGCGGCGGATGGCCTTGATGAGCGCTGTGGAGGCCGGC
ACGGAGTCCAGCGGCAGCGACTGCG------------------ACGGAAGCTTCTTGAGCGCGCCGG-------------
-----------CGAGCACGCGCTCGAACAAGTCCCCCTCGGACGCGTTCCCGCCTGACGC--------------------
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>chr3D_1405
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------------------------------------------------------------------------------CT
TAAACACGGCCTTGAGCCGCTCCTCGAACTCGCCGCGGTACTTGGCGTCGG---------------TGACCAGCGCGACC
AGGCGCACGTCCAGGAGGTTGTCGTGCACGTCGCCGTGCACGACGCACTGCGCGAGCCCCTCCACGACGACGGTCTTGCC
CACGTCGGGCTCGCCGATCAGGACGGGGTTGTTCTTGGTGCGCCGCGACAGGATCCACACCACACGCCGGATCTCCTCGT
CGTGGCCGATGACCAGGTCCAGCTTGCTC------GCCACCTCCACGAGGTTGCGGCCGTGCGTCTTGAGGGCCTGGAAA
TTGGTGCCCCCCGATGCGGACTCCAC---GCGACGGTTGTCGCCTCCCCGGAGCTTC--GACCTCGGCCTTCACCCGCGC
GGCCGAGACGTCGGCTTCCTTGAGTGCGTCGGAGAT------CTGCGGGTCCTCGGGGAGGCCCATGAGCAGCTGGTCGA
CGGCAAGGTGCGAGTCACCGCGCGACTTCTGTGCCGACTGCGCATGGCAGACGACCTTGACCAGCGAGGTGGACGTCGGG
ACGGTGTCGGGCGGCGGGGACTGCA------------------AGGGAAGCCTCTTGAGCGCGGCGG-------------
-----------C------------------------CGCGGCGTCGTTGCCACCAGACGCGTGGGCGATGGCCTGGCGGA
GGATGCCTGACTTGTCCGCCACGAGCGCCG-------------CGGCGTGAGCTGCGCGTGGCCAGCCTCGGACGCCATC
TCGTGCGCCGCCGCGAGCGCCTCATTGGTCTTGTGCGTGAACTTGTCGGGATTCATGGCTTCCGCTTCTGCGAACTACGG
CTTAACTGCAAGGAAAGTGGCAATTGCGATGTGT--GGATTCGTGGGTTCGAATACTCGCTTTGGTGTCTTCTCGTCGG-
---AATTGCTGGGA-GAGATCGAAGATGAGATGAGTAATAAGAGGAGGGAGGGGATAGTTCGCCGGAGGCCTAGAACGGC
GTGGAAGCGGTGGGAAGGCAGCGAGTTAGGGG------------------------------------------------
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>chr1A_2615
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--------------------------------------------------------------------AGGAAAATGCTT
GGTATCATCTGCCTGATTGCGTCGACCGCCTCTGCAGCCATCTGATTAACTTTTAATCGTGCG--GCACACAACAACTCT
TATTATACGCATGAGCTTTACAACA------------------------------------GGACCGTGTTGCAAAATCC
AAT--TCAACTGTGCGACACGTGCCTACATAGTCATAGAAAAAACTATATATAGTTCTTGCTACCACACTTTAAGATTTC
AACTAGATCCTTTCATTTAAGACTTGAATGAAATTACATAAGGAATCCTGGTCTCAAAGAAGAGGGAAATGGGGATATAG
TTAACCGCCATGTTAACTAATCGATTATGAAAAATTAAATCGGATTTTGCAGTTCTTTTTTCTGCAGTACCTCGACGTAA
CATGAGCGTGAGGACCCACAGCCACTCTATCA--------TTCTTATCCCAAATGAAAAGAGCACAACCACATATTTTGC
CCTGAACCTCATCTCCTACCTCCAGGTCCCTTTCATGGATGTAAGCCCCCCAAGCACGCATCCAAATCCTCTGCCATTCG
TGAGAAGAGAGAGAACCCATGGC-AAACCTAGCTGTTGTAAAACTCCTGCGAGCTTGGGAAGAGGGACGAAACTTCCGCT
ATTTACTGCGCCCTCGCTCGCTGCCTC---CCCGCATCGCACCGGGGACC--TACCCAGCTAGCGCGCGTCGTTCATCGC
GGCCCTCACCGCCAGCGCTTGTGCTGCGAAACGAGTTTCCGCAACAACGACTGTGTTGCAAATGGTGGTGGCGAACGACC
ACTAATTGCAAGGGGATTTTTTTTTTGTTTCTGCAACAAGCTTCTTGTTGTAGAGGGAGCGAGCACAACA----CAAAGG
GGGCGACAACGAAGTTTTTTGTTCTGCAACAG
>chr2D_2645
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----------------------------CCTCTACAACCGTCAGATTAACTTTTAATCATGCAGAGCACACACCAACTCT
TATTATACGCATGAGCTTTGCAACATGGCTCTTGTTGTGT---AGGCTGCTTCTGCAACAGGGACCGTGTTGCAAAACCC
AAT--CCGACTGTGCGGCACGTGCCTAGAT--------------------------------------------------
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----------AGGACCCACAACCACTCTCCCATTCTTATCTTCTTATCCCAAACGAAAAGAGCACAACCACATTTTTTCC
CCTAAACCTCGTCTCCTATGA--AGGTCCCTTCCATGGATGTAAATCCCCCAAGCACGCATCCAAATTCTCTACCATTCG
TGAGAAGAGAGAGCACCCATGGCCAAACCTAGCTGTTGCAAAACTCCTGCGAGCTTGGGGAGAGGGGCGAAGCTTCCATT
GTTTACCACGCCCTCGCTCGCTGCCCCATCCCCGTGTCGCACC-GGGACC--TACCTAGCTACCGCGCGTCGTTCATCGC
GGCCCTCACCGCCAGCGGTGGTGCTGCGGGACGGTTTTCCGCAACAACGACTTTGTTGCAAATGGTGGCGGCGAACGACC
ACTAATTGCAAGGGGATTTTTTTTT-GTTTCTGCAACAAGCTTCTTGTTGTAGAGGGAGCAAGCACAACA----CAAAGG
GGGCAACAACGAAGTTCTTTTTTCTGCAACAG
>chr4D_2645
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----------------------------CCTCTACAACCGTCTGATTAACTTTTAATCGTGCG--GCACACAACAACTCT
TATTATATGCATGAGCTTTGCAACATGCC-CTTGTTGCGGGGGAGGCTGCTTCTGCAACACGCACTGTGTTGCAAATCCA
TTCCATCAATTGTGCGTCACATGTCCACAT--------------------------------------------------
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----------GGGACCCACAACCACTCTCCCATTCTTATTTTCTTATCTCAAACGAAAAGAGCACAGCCACATATTTTCC
CCTGAACCTCGTCTCCTACCTCCAGGTCCCTTCCACGGACGTAAATCCCTCAAGCACGCACCCAAATCCTCTGTCATTCG
TGAGAAGAGAGAGCACCCATGACCAAATCTAACTGTTACAAAACTGCTACGAGCTTGGGAAGAGGGGCGAAGGTTCCGCC
GTCTACCGTGCCCTCGCTCGTTGCCTCATCCACGCATCGCGCCGGGGACC--TACCTAGCTACCGCGTGTCGTTCATCGT
GGCCCTCACCGCCAGCGGTGGTGCTGCGAGACGAGTTTCTGCAACGACGACTTTGTTGCAAATGGTGGCGGCGAACGAAC
GCTGATTGCAAGGGTATTTTTTATT----TCTGCAACTAGCTTCTTGGTGTAGAGGGAGCAAGCGCAACAGTTGCAAAGG
GGGCAACAACGAAGTTTATTTT-CTGCAACAG
>SNPs
-------------------S------------------------------------------------------------
--------S--------------------------------------S--------------------------------
------------S-----S-----------------------------S-------------------------------
--------------S----------------------------------S------------------------------
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---------------------------------------------------------------------S----------
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-----S--------------------------------------------------------------------------
----S----S------------------------------------------------------S------S--------
-----------------------------S--------------------S-----------------------------
----------------------------------S--------------------S-----------------------S
-----------------S-----------S---------------------------------------------S----
--S--S----S------------SS----------------------------S------SS--------S---SSSSS-
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-----------------S--------------------------------------------------------------
---------S----------------------------------------------------------------------
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------------------------------S-------------------------------------------------
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---------------------------------------------------------S-----S----------------
------S------------------------------------------S------------------------------
-------------------------------S------------------------------------------------
----------------------------------------------S---------------------------------
-------S----------------------S-----S---------------S---------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------
---------S-S-S-SS--------------------S--------------------------------------S---
--------------------S------------------S------S---------SS----------------------
-------------S------------------------------------------------------------------
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-----------------S-----S---------------------------S------------S-------------S-
-S------------------------S-----------------------------------------S-S---------
--------------------S--S-------------------------------------------S-------SS---
-----S---------------------------S-------------SS-SS-------------S--SS------S---
------------S----------S-------------S--------------------------------------S-S-
--------------------------------S-----S--------------------S--------------------
S-------------------------S-----
>forward_173
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-------------------------------------------------------------------------CCACCCT
CTGATGCAGTCTG-------------------------------------------------------------------
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>reverse_1148
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---------------------------GCCCTCGTACTTCTCCTTGAG--------------------------------
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>forward_566
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------------------------------------------------------------------TCCTCTCTTTCTCC
TTGCGG--------------------------------------------------------------------------
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>reverse_2642
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-TCTGTGCCCTGCAACTATGG-----------------------------------------------------------
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