>input_sequence_55521
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----------------------------------------ATGGAAGGAGCCATCTCCAGCCGGCCAAACAAGAGGTTAG
CCTACCTACCGATTCTTTGCTCTTGACGCCGCGATGTAGGTTTGCCTCGAAGCAGTATTGCTCATTTGCTCTGAT----C
GGCGGCGCGTGGTTGCTAGGATCGCCGTCGTCACCGGCGGGAACAAGGGGATCGGCTTCGAGGTGTGCCGACAACTAGCC
AGGGATGGAGGAGTCACGGTCGTTCTGACAGCTCGGGACGAGACGAGGGGCGCGGGGGCGGCCGAGAAGCTCAGACCGCT
GGGGGTCACCG------ACGTCGTCTTCCATCAGCTGGACATCACAGACGCTTCGAGCATTGCTACGTTAGTCGATTTCC
TCGAGGCCCGTTTCGGGAAGCTGGACATCCTGGCAAGTTTTCCATTTGCTTTCTTCATGCTAATGCTCTG----------
------------TCACCGAAGGTTTGAAGCAACCGTCCGGTG--------TAATTTGTAGGTCAATAATGCCGGCGTTGG
TGGGGTTGAGTACCCCCAAGAACTCGATGCCAACGACGAGAAGGTGAGTTCACGTGGCTCTG-------TTGTTGTGCAA
TTGCTCGGACATATATGCATCCTGGT---TGAACAAGTTCATCTT---ATCTGTGCATCAGTTCGCCGGCCTCGACTCCA
ACCAGAGACTTGAATGGATGGTGAAGAATGTCCGGGAGCCCATCGACGCCGCAAGGAAAGCCGTGGAGACAAACTACTAT
GGCACCAAGCATGTAATCCAGGCCCTGCTGCCTCTGCTGCTGCAATCTTCCTC------CCAGGGAAGGATAGTGAATGT
CTCCTCCGAATATGGACTGCTAAGGGTAACTTAATCATGTTCT-TTCCAATCTCCATCGATCATGCTATTGCTACACCGG
TATCGA-ATCAAATATATA---AAGGGAACTTTGATCTATC--------CATGCAGCTTATTAGGAACGAGGAGGTGAGG
CGGGACCTCAACGATATCCACAACCTGACAGAGGAGAGGCTAGACGAGGTGCTGGACAAGTTCTTGCAAGACTTCGAGGC
CGATGCGCTCGAGGCGCACGGGTGGCCCACGGGGTTCTCGGCATACAAGGTGGCCATGGCCGCCACCAACGCCTACACGA
GGATCTTGGCCAGGAGGCACCCCACGCTGCGCGTCAACTGCGCGCATCCGGGCTATGTCAAGACAGACATGAGCATGGGC
TCAGGTGTCCTGACGCCCGAGGAGGGAGCACGCGGCGTGGTGAAGGTGGCGCTGCTGCTGGACGGTGGCCCAACCGGCAA
GTACTTCACCAAAGGCGAGGAGGCGTCGTTCGTGTGA-------------------------------------------
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>chr7A_1_TraesCS7A01G114100
GGACACTACGACTCAATAAATCGAAAGGTCTCTCCACAGCCAATACCACCGATGAGCCAGCAGCCAAGAGGATTTGCAGC
TGAATAGACACTACAGATGCTACCACGCCAGATATATACTTCACTCTTTCTATTCCCAATGGATGAAATTTTAGGTAACA
GGAGGCGTTCCAGAAAATTAATAAAAATATAGAACGAAAATTTTATTGATGTCTTTGGTCATTATTATATACTATAGCAC
ATATGCTTGTGAATTGTAACGGGAGAAAAAACATGTGTGTATTTAAATTTAGCTATAATTGTATGAGCAAAAGACAATGA
TAGTTCATGCGAAATTTAGTGCTTACCAAGAGGATCTATAGCAAAGTCCTATGTCCAAATACTACCAAGCAAAGACAAAC
TGCATTGTCTACTCTCCAAATCCACGACATTCAAATTGAACGCCATGTGAAGGAGGAGCCAGCCACCCTGCCGCGCCACC
GCATGAAGGAGGAGCCGGCCTCGCAGCCTTGTTGCTAGCCAGGCAACCGGTGAATTTTTTTTCATTGACACGTCCAAACT
TGTCCGTGGATATTTGGTGATCTTCATTTCATGACCCTCGCTGGAGATGCCCTGAGGGCATAGATAGCCCAATATTCCGT
GACCCTAGTCGTGGTGCTGGTCGCGGTCGCCACATCACTTGTATCCTTCTAATACATTGATGTGCAAAGCTTTTGTGTAT
TTGAAAAAAAGAAAAAGAAAAACCCGACTTCCTTCTCTCGTAGCACAGTTGTCCATGAAAGCAACGCATGAGCTGCTGGC
AGTGCCGGCATGATGTCCTCCTCCTCTCTGAAAGCAACGGATGTGCTGCTGGCAGGCATGCATGATGGCCTACGCGTGTG
CCTAACCACCAGGACGGCGAAGGGGACCTAGTAGATTAGAATGGATAACATCACCAATCTGACGATTGTGGAAACGCTAT
ATCTTCTTGTTTGAGCTCGTGGTCGTGTGGTGCAGCACTCATGGAAGGAGCCATCTCCAGCCGGCCAAACAAGAGGTTAG
CCTACCTACCGATTCTTTGCTCTTGACGCCGCGATGTAGGTTTGCCTCGAAGCAGTATTGCTCATTTGCTCTGAT----C
GGCGGCGCGTGGTTGCTAGGATCGCCGTCGTCACCGGCGGGAACAAGGGGATCGGCTTCGAGGTGTGCCGACAACTAGCC
AGGGATGGAGGAGTCACGGTCGTTCTGACAGCTCGGGACGAGACGAGGGGCGCGGGGGCGGCCGAGAAGCTCAGACCGCT
GGGGGTCACCG------ACGTCGTCTTCCATCAGCTGGACATCACAGACGCTTCGAGCATTGCTACGTTAGTCGATTTCC
TCGAGGCCCGTTTCGGGAAGCTGGACATCCTGGCAAGTTTTCCATTTGCTTTCTTCATGCTAATGCTCTG----------
------------TCACCGAAGGTTTGAAGCAACCGTCCGGTG--------TAATTTGTAGGTCAATAATGCCGGCGTTGG
TGGGGTTGAGTACCCCCAAGAACTCGATGCCAACGACGAGAAGGTGAGTTCACGTGGCTCTG-------TTGTTGTGCAA
TTGCTCGGACATATATGCATCCTGGT---TGAACAAGTTCATCTT---ATCTGTGCATCAGTTCGCCGGCCTCGACTCCA
ACCAGAGACTTGAATGGATGGTGAAGAATGTCCGGGAGCCCATCGACGCCGCAAGGAAAGCCGTGGAGACAAACTACTAT
GGCACCAAGCATGTAATCCAGGCCCTGCTGCCTCTGCTGCTGCAATCTTCCTC------CCAGGGAAGGATAGTGAATGT
CTCCTCCGAATATGGACTGCTAAGGGTAACTTAATCATGTTCT-TTCCAATCTCCATCGATCATGCTATTGCTACACCGG
TATCGA-ATCAAATATATA---AAGGGAACTTTGATCTATC--------CATGCAGCTTATTAGGAACGAGGAGGTGAGG
CGGGACCTCAACGATATCCACAACCTGACAGAGGAGAGGCTAGACGAGGTGCTGGACAAGTTCTTGCAAGACTTCGAGGC
CGATGCGCTCGAGGCGCACGGGTGGCCCACGGGGTTCTCGGCATACAAGGTGGCCATGGCCGCCACCAACGCCTACACGA
GGATCTTGGCCAGGAGGCACCCCACGCTGCGCGTCAACTGCGCGCATCCGGGCTATGTCAAGACAGACATGAGCATGGGC
TCAGGTGTCCTGACGCCCGAGGAGGGAGCACGCGGCGTGGTGAAGGTGGCGCTGCTGCTGGACGGTGGCCCAACCGGCAA
GTACTTCACCAAAGGCGAGGAGGCGTCGTTCGTGTGAGGTGCTGGCTGGCGGTCGTGAGCTAGCTCGCCAGTTCGTCCGC
CGTGCACTGTCCGGTTTGAGATTGAGAATAACAGACGGGATTTGCCATTTCCTTTAAATGAATAATAAGCTGATGCACTT
TACCCTTGCATTGGAAAATGATAATAAAGCAGTAAATTATGCACGTAAGCAATGCTATGTTAACACTGCAACATGCCGAG
GAAAATGCATGGTGGGGTTACTAACACGAAGTAGGCAGAGATATGCTGCAGAAAAACAGAAAAGGTTAATCGGATGATGC
AGCTGGGTTCTCCAGCAACGTCAAAGATTAAAACTAGAGGGTATCAGCACCAAATTAGAAGAAGAAAAACGGATCAAATA
GAGCTCGTCGTGTCTCTAGTTGAACTCTTGAATCCGTATAATATTGTTGAATTCATTGCCAGTCACGCGGACAACTGAAT
TCGCCTTAGCTCAGCTGAATTCCTTCGATACCGGCTCTCCTACCCACTGCCAACTGTTCGGTAATATCTTGTAATAGCAC
ACATGCACACACACCGTTTTCATCACACAAAATTGTTCCCCAAAACCAGCCCTGGTGCGAGACAAAGAACCGAGCACTGC
TACGCCTGGAGTAAATTGCACAAAACCATCACTTTGAAGGCTAGGTTTGCGAAAAACACTACAATACATTTTTTTTTTGC
AAAAAAACACCACGTCTACGGTAATCTTTTTTGGAAAAAACACTAATCGGCGGATCGGGCTCAGTTAATTGAGTCTATGA
CAAATGGGGCCCGCCAGTCAGGCTGACGTGGCACCAGTTTCTCACACTGTTACATGAAAACGTTTGCTGAATGTGGGGCC
TACTTGTCAGCCTATCAAGCCTCTCTTTGGCATTCCATCGAACAGTTTGAGTGCAGTGCACACGCCGGCGGACAAAGGCT
GGCGTCGCGAGTCTCAGCCAGGCGAGGAAGGTCAAGGACGGCAAGGACCGTGGCGCCGGGATGCGGCGGCCGTGCTC
>chr7A_1106
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-----------------------------------------------------------------TTGCTCTGATTTCTC
GGCG----GCGGTTTCTAGGGTCGCCGTCGTCACCGGCGGGAACAAGGGGATCGGCTTCGAGGTGTGCCGGCAGCTAGCC
AGCGACGGAGGAGTCACGGTCGTCCTGACGGCCCGGGACGAGACGAGGGGCACGGAGGCGGTCGAGAAGCTCAGAACGCT
GGGGCTCACCGACGCCAACGTCGTCTTCCATCAGCTGGACATCACGGACGCTTCGAGCATCGCCACGCTAGCCGATTTCC
TCAAGACCCGTTTCGGGAAGCTGGACATCCTGGCAAGTTTTAACTCCGTCTGCTTCCATTTCCATGCTGCTAGTAAGGCT
GCGATGCATGCATCACCCAAGGTTTGAAGCGACTGTGGATGA-------TTAATTTGCAGGTGAACAATGCTGCAATCGC
CGGGGTTGAGTACCCCCAAGATGTGGATACCAACGAGGAAAAGGTGAGTGAAGTGTCTAATT----AATCTGTTCTGCAT
TTGCTCGGACATGTATCATGTATGTAGGCTGAACAGTTAGCTCTG-------------CAGTTCGCTGGCATGGATATCA
AGCAGAGACTTGACTGGATGATAAAGACTGTCCGGGAGCCCATCGGCGCCGCAAAGAAAGCCGTGGAGACGAACTACTAC
GGCACCAAGCATGTCACCCAAGCCCTTCTGCCTCTGCTGCTGCAATCTTCCTCTTCCTCCCAGGGGAAGATAGTGTGCGT
CTCCTCCGACTATGGGCTGCTCAAGGTAACTTATTTTCTT------------TCCATCAATCATGCAT--------GCAA
GCTCGATATCGAATATATATAAAAAGGGATTTCGATCGATCTATGTCTGCATACAGCTTATCGGCGACGAGGAGATCAGG
CGGGACCTCGACGACATCGACAACCTGACGGAGGAGAGGGTGGACG----------------------------------
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>chr2B_1106
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-----------------------------------------------------------------TTGCTCTGAT----C
GGCT----GTGGTTGCCAGGATTGCCGTCGTCACCGGCGGGAACAAGGGGATCGGCTTCGAGGTGTGCTGGCAACTAGCC
AGC---GGTGGAATCACGGTCGTTCTGACGGCCCGGGACGAGACGAGGGGCGCGGAGGCAGTCGAGAAGCTCATAGCGCT
CGGGGTCA------CCAACGTCGTCTTCCATCAGCTGGATGTCACGGACACTTCCAGCATTGCTACACTGGTCGATTTCC
TGAAGACACGCTTTGGCAAACTAGATATTCTGGTAGGTTTTCC---------CTTCCATTTTATACTCCA----------
--GCTGCTAGATGCATCAAAGGTTCTACGCAAATAATAGATGTACCCTGTTAATTTGCAGGTGAACAATGCCGCAATCGG
TGGGGTTGAGTACCTCCAAGAACTCGACACCAGCGAGGAGACGGTAAGCTCACTTTGGGCGAGGTGAATTTGTTCTGCAA
TTACCCGAACATGCCG----------GACTGAACAAGTTTATCTGTGGATGTGCACAACAGTTCGCTGGCATGGATTTCG
ACCAGATGCTTGAATGGATGGTGAAGAACGTCCGTGAGCGCATCGACAGTGCAAAGAAAGGCGTGCAGACGAACTACTAC
GGCACAAAGCATGTAACAGAGGCCGTGTTGCCT---CTGCTGCAATCTTCCTC------CGAGGGAAGAATTGTGAACGT
CTCCTCCATATTTGGGCTGCTAAGGGTAATT-----ATGTTCTATTCGTTGAT------------CAT--------GCCA
TCCCGATATCAAATCTAATGATAAGGAATTTTGAATCTACTATG-------TGCAGCTTATCAGCAACGAGAAGGTGAGG
CGGGAGCTCAGTGACATCGACAACATGACAGAGGAGAGGCTGGACGAGCTGCTGAACAGGTTCCTCAGGGACTTCGAGGC
CGACGCGCTGGAGGCGTGCGGGTGGCCCATGGGGTGCTCGGCGTACAAGGTGGCCAAGGCCGCCATGAACGCGTACTCGA
GGATGTTGGCGAGGAGGCACCCCGCGCTGCGCGTCAATTGCGCGCACCCAGGCTAC-TCAAGACGGACATAACCATGAAC
TCTGGTGTCCTGACGCCCGAGGAGGGCGCGCGCAACGTGGTGAAGGTGGCGCTGCTGCCGGACGGCGGGCCCACCGGCAA
GTACTTCGCCGAGGGCGAGGAGGCATCGTTCGTGTGAGGTACCGGCCGGC------------------------------
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>chr2A_1122
CGCTGT--------------------------------------------------------------------------
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----------GGTCGTCAGGATTGCCGTCGTCACCGGCGGCAACAAGGGGATCGGCTTCGAGGTGTGCCGGCAACTGGCC
AGCCA---TGGAGTCGCGGTCGTTCTGACGGCCCGGGACGAGCCGAGGGGCGCGGAGGCAGTCGAGAAGCTCAGAGCGCT
GGGGCTCG------CCCAAGTCATCTTCCATCAGCTGGATGTCACGGACACTTCCAGCATTGCTACACTGTTCGTTTTCC
TGAAGACCCGCTTTGGCAAACTAGACATTCTGGTAGGTTTTCC---------CTTTCATTTTATACTCCA----------
--GCTGCTAGCTGCATCAAAGGTTCTAGGCAGATAATAGATGTACTCTGTTAATTTGCAGGTGAACAATGCCGCAATCGG
TGGGGTTGAGTACCTCCAAGAACTCCATGCCAACGAGGAAAAGGTAAGGTCACGTTAGGCGAGGTGGCTTTGTTCTGCAA
TTGCTCGTACACGCCG----------GACTGAACAAGCTCATATGTCGATGTACGCAACAGTTTGCCGGCATGGATTTCG
ACCAGATGCTTGAATGGATGGTGAAGAACGTCCGTGAACCCGTCGACAGTGCAAAGAAAGGCGTGCAGACGAACTACTAC
GGCACGAAGCATGTAACCGAGGCCGTGCTGCCT---TTGCTGCAATCTTCCTC------CGAGGGAAGAATTGTGAACGT
CTCCTCCCTATTTGGGCTGCTAAGGGTAATT-----ATGTTCT-TTCGTTGAT------------CATGGCATATTGCCT
TCCCTATATCAAACCTAAC---AAGGGACTTTGAATCTATA--------TATGCAGCTTATCAGCAACGAGGAGGTGAGG
CAGGAGCTCAATGACATCGACAACCTGACAGAGGAAAGGCTGGACGAGCTGCTGGACAGGTTCCTCAGGGACTTCGAGGC
CGACGCGCTGGAGGCGCGCGGATGGCCCATGGGGTGCTCTGCGTACAAGGTGGCCAAGGCCGCCATGAACGCCTACTCGA
GGTTGCTGTCGAGGAGGCACCCCGCGCTGCGCGTCAACTGCGTGCATCCAGGCTACGTCAAGACGGGCATAACCATGAAC
TCGGGCGTCCTGACGCCCGAGGAGGGCGCGCGTAACGTGGTGAAGGTGGCGCTGGCGCCGGAGGGCGGGCCGACGGGCAA
GTTCTTCGCCGAGGACGAGGAGGCATCGTTCGTGTGAGGTACCGTCGGGCTGGCGGTGCGTG------------------
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>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------
----SSSS--------------------------------------------------------------S---------
--S--S-----------------------S--S----------------------S-----S-------------S----
---------------------------------------------S---------------------S------------
--S--S-------------------------------------S-SS-SS-S----SSSS-S--S---SS----------
-----------------S---------------S--SS-S-----------------S----S--S-------SSS-S--
------------------------------------S------------------S-SS--S------------S-----
------------S---SSSSSS--SS------------------S-----S--S---S------------S-S--S-S--
------------------------------------------------------S---------------S--------S
----------------S------------------------------------------------------------S--
---------------S-----------------S-S-----------SSSSS------S-------SSSSSS--SSS-SS
-S---------------------------S--S----------------------------S--S---------------
--------------S---S----------------------S------S---------S----S-SSSS-----------
---S-----S-------S-----------S-----S------S-------------S--------SS---------S---
----S-----S------------S-------------------------S-----S--------S-----S-S----SS-
--S-----------------------S--S---SS-----------------------S------S--S--S--------
-------S--S-S-----------S---------------S-S---S---S-S--SSSSS-SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_458
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--------------------------------------AACGCCATGTGAAGGAGGAG----------------------
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>reverse_1326
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---------------------------------------------AGACGCTTCGAGCATTGCTA---------------
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>forward_462
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------------------------------------------CCATGTGAAGGAGGAGCCAG------------------
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>reverse_2309
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--------------------------------------------------------------------CCCAACCGGCAA
GTACTTCA------------------------------------------------------------------------
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>forward_2064
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--------------------------------------------CGAGGTGCTGGACAAGTTCT----------------
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>reverse_3186
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-----------------------------------------------------------------GCTGAATGTGGGGCC
TACTT---------------------------------------------------------------------------
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