>input_sequence_55492
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-----------------------------------------------------------------------------CTA
TAAAAACAGCCCGCCGCGCTCCGCTTGCCACACCACGGTCCACGCCACCAGCTCCAGCAGACCGCGACGACGCACGCCGG
GATCGATCATCTTCAGGGATCATCTTCAGGACTTCAGCAAGCCGGACGCAGATGGCAGCGGGGTTCCGCCGGCGGCTCGC
CTGCCTCACCGCCCCCAGGGCCTCCTCCTACCTCCGCCGCACGCGCCACAAGAAGCTCTCCTACGCCCGCGCCCGCTCCG
CCAGCCTCCCCGGCCGCTTCCACCCGGTCGTCGCCGGCCTCCACGACGCCGCCAACGAGGTGCTTGGGTGGACCGAGGCG
CCCGCGTCGGCGCAGGCCGGCACGGAGTGGATCGGCGACGGCGTGGGGCACCTCGGCCGGCTCCTGGCGGGGCTCACCGA
CCTGCTCCACCACCCGCAGGCGCAGGACCCGCTCCGGCACTCGCGTCGGCCGGGCGGCAAGGCGGCCGCGCCGTGGGCGG
AGCGGCTGCTGGACGACCTCCTCCTCCTCGCCGACGCGCACGGCTGCTTCCGCGAGGCGCTCCTGTCCCTCAAGCAGCTG
CTCGCCGAGGCCCACGCCGCGGTGCGCCGACGCGACGCCGCGCGCCTCGCGGCCGCGCTGCGCGCGCGCCGTCGGTCGGA
CCGCGACATCTCCCGCCTCGCCTCCACATTGCGCGCCCTCTCCCACCGTTCGTGCTCCTCCGCCGCGTCGACGTCCGACT
CCGGCGAGGCCGCGCTCGCCGAAGCCGTTGCGGCCGCGACCTGCGCCGCGGCGGCCGCCTCCGCCGCAATCTTCGCCGGT
CTCGCCTCCGCCTCCGCCTCCTCTGCATCGCGCGCATTGACCTCCCCGACATCGGCCTCTTCTCCCGCGAAGGCCGCGCC
GGTGTGGTGGGTGTCCGACCTCCTACGCTGGCGGCGGCGCACGGTGTCCGTCGCCGCCTGCGAGTCCTCCGGATCGCCCC
GTGGCACCAAGGAGACACCTTCGGAAGAATGCTGCGACGAGGAGGAGGACGAGAGGAAGGCGGCCATGGAACGGCTGCGG
GGCCTCGAGGAGTCCGTCGTGGCCGCCGAGGACGGCTGCGAGCAGGTGTACCGCGCGCTCGTGAACGCGCGGGTGTCGCT
GCTCAACGTCCTCACGCCCTGCTTTTGAGTTTTGACGGCCCGATAGGACAATGTGGATTAGTTTGATTCGATTGATCTTT
CTTAGTTTTCTGTAGCTTGTGTATACATGATGTACAGAGATCGTTTCAAATTGAAACGAGATTGTAATTAGGCGAAATGC
TCA-----------------------------------------------------------------------------
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>chr4D_1_TraesCS4D01G324600
TTCTCCGGTCCAGATACAGCACCAGCGAGCCGATTGA-------CAGGCAGATCAACATTGAAAGCTTGAGGTCGACACG
GCCATGGATGGAGCGGGAGCGGATCGCTACC------TTGCAGGTGCAGGCCGCTGTGGCGGTGGCGCTAGAGAAGAAAG
GAAGATGTCCCCGTCGTCGCCCGTCTGCTCGACGGAGAAGTGCGATGCGATGCGCTGCGGTACGTACGGTGCACGGGGCG
CCCATCCGCGTCGCGCCCCCAC-----GGCACAGTGCACGGCGATACGTGCGTGAATACGTGATGGCAACGGCGATGGGC
CGGCCAGCGCGCGAGGTGGGGCAGCGTTTGGGTGGGTGGTGCCCGAGCGAGCGAGCGATCTCCGCCGACGCGCGCGGCCA
TGCCGGCATTGAATGGGGCCGTGAGCTGTGCGCGAGGTGGGCCGGCGCCCGCCGACTGCACGTGTCCCCGCCGGCCGTCG
CGCCACTCCTACTCTTTGGGTTTTTTTTCCTTTTTTTTTGTGAGCA----------------------------------
-TACTACTCTTTGGTTTCTGTCCGTGACACCTGGACGGAGTCAAAAAGTTTGTTACTGCCACGGTGGAGGGTCAAGCTCG
TTCTAAC-----GCTGCGCTCGCACACAAGTCAACTGCGTGGCGATCATTGCT----CTGCTCACATTGTCCAACTTGAT
CTGCTGCTGCT------ACTACTCGAGTTTGACTGAGCTGTCCGCTTTGCAATGTCACGGGCAGGATGGTCAACCCAACC
AACCAGCAAAAGGTATTGTACACGTACAAAGTGCTCGTGTACGTACGTACTTTACCCAGAGTCTTCCACAGCAAGATGAT
GATTCACCCAGGCCTGGGCTCTGGG-------------------------------------------------------
------------------------------------------------------CTCCTTGCTCTGCAAGCTCAGTGTCC
AAAGTGA---------------AAAAAGTAATCCAACGTGTCCA-GGAGCCAGCTGCCGCCTTGCCTTGCCTGCCACACC
ACACTATCCAGTATCCACTCATCCCCATGCCAT----GCCCGCCCGTGCGGGCTCTGCCGAGCCACATGACACCACCCTA
TAAAAACAGCCCGCCGCGCTCCGCTTGCCACACCACGGTCCACGCCACCAGCTCCAGCAGACCGCGACGACGCACGCCGG
GATCGATCATCTTCAGGGATCATCTTCAGGACTTCAGCAAGCCGGACGCAGATGGCAGCGGGGTTCCGCCGGCGGCTCGC
CTGCCTCACCGCCCCCAGGGCCTCCTCCTACCTCCGCCGCACGCGCCACAAGAAGCTCTCCTACGCCCGCGCCCGCTCCG
CCAGCCTCCCCGGCCGCTTCCACCCGGTCGTCGCCGGCCTCCACGACGCCGCCAACGAGGTGCTTGGGTGGACCGAGGCG
CCCGCGTCGGCGCAGGCCGGCACGGAGTGGATCGGCGACGGCGTGGGGCACCTCGGCCGGCTCCTGGCGGGGCTCACCGA
CCTGCTCCACCACCCGCAGGCGCAGGACCCGCTCCGGCACTCGCGTCGGCCGGGCGGCAAGGCGGCCGCGCCGTGGGCGG
AGCGGCTGCTGGACGACCTCCTCCTCCTCGCCGACGCGCACGGCTGCTTCCGCGAGGCGCTCCTGTCCCTCAAGCAGCTG
CTCGCCGAGGCCCACGCCGCGGTGCGCCGACGCGACGCCGCGCGCCTCGCGGCCGCGCTGCGCGCGCGCCGTCGGTCGGA
CCGCGACATCTCCCGCCTCGCCTCCACATTGCGCGCCCTCTCCCACCGTTCGTGCTCCTCCGCCGCGTCGACGTCCGACT
CCGGCGAGGCCGCGCTCGCCGAAGCCGTTGCGGCCGCGACCTGCGCCGCGGCGGCCGCCTCCGCCGCAATCTTCGCCGGT
CTCGCCTCCGCCTCCGCCTCCTCTGCATCGCGCGCATTGACCTCCCCGACATCGGCCTCTTCTCCCGCGAAGGCCGCGCC
GGTGTGGTGGGTGTCCGACCTCCTACGCTGGCGGCGGCGCACGGTGTCCGTCGCCGCCTGCGAGTCCTCCGGATCGCCCC
GTGGCACCAAGGAGACACCTTCGGAAGAATGCTGCGACGAGGAGGAGGACGAGAGGAAGGCGGCCATGGAACGGCTGCGG
GGCCTCGAGGAGTCCGTCGTGGCCGCCGAGGACGGCTGCGAGCAGGTGTACCGCGCGCTCGTGAACGCGCGGGTGTCGCT
GCTCAACGTCCTCACGCCCTGCTTTTGAGTTTTGACGGCCCGATAGGACAATGTGGATTAGTTTGATTCGATTGATCTTT
CTTAGTTTTCTGTAGCTTGTGTATACATGATGTACAGAGATCGTTTCAAATTGAAACGAGATTGTAATTAGGCGAAATGC
TCAGTAAATT-------------------------------------------T-TTGTTCTTGATTGACTGAAAACGTC
TCGTCCAAATTTTGCAGTTGTTCTCTCTGTTAGGCTAAGGTACTCCCTCCATTCCTTTTTACTCCGCATATAAGATT---
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--------TATGTCGAATCAAACTTTACAAACTTTGATCAGATGTGTATAAAAAAAATCAACATCTACAATACCAAATAT
ACATAATATGAAACTACATTCCATAATGAATCTAGAGATATTCCTTT---------------------------------
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---------------------------------------------------------------GGCCTTGTAAATGTCGA
TTTTTTTTCTATAAGTTTGATCAAAATAGGGATACTTCAAGTTATATGCAGACTAAAAAAACGGAAGGAGT---------
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-------AATCATGGCGTATACTCATCTTCATTCGCCAAAAAGAGAAAGGTATACTCTTTTTTTTTGCGATGGAAGAAAA
AGGTGTACTCCTCTTGGGAGCTTTTTGAAAAGCTTATTTGGTTCAATTGCCATTACGGTAAAGTTTAGTTTTCCGGTGAC
ATAAGCCAATTTTTTCACTTTTTGTCCGACAGCAATGTATTTTTTTTCTTCAGTTTTTTCATGTTGTGTGTGTCGATAAG
TTAGCTATATGCTCTGCCATCTTCAACTACTGCCGAGTGTAAGCGACTGTTTACATTTGGACTCTTGCACCGTCTAAACT
GTTTACTAGATATTTTCTGGTCGCTTGAATATCATAGGCCGACACGGTGGTGGGATCGTAACTGTTTGGATTTTGGTCGC
TTGCTCCGACATGGTGGTGGGATCACATCTAGCACTAGCAGTCCAGGATTATTCCAAGAAAGAAAAGGGATGGAC-GGGA
AAAATCTCACCCAGGCAGATTCCCTAACCCACCTTTATATTTC-------------------------------------
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---------------------------------GTGGAAGTGGGAGATTTTACAGTGCACTACATCCCTGAATTTTTTTG
GCGCCACAAACGTTTCCTCTTTCGCCCGTCCCTCCCGTCTGCGTCGCCATCGCCACCGTGCCACCTTCCTTCGCCCGTGG
CTCCAACAATACCGTGAATTGAAATTTGAAAGACCACGTCG
>chr4B_1
TTCTCCGGCCCAGATACAGCACCAGCGAGCCGATTGA-------CAGGCAGATCAACATTGAAAGCTTGAGGTCGACACG
GCCATGGATGGAGCGGCAGCGGATCGCTACCTTGCAGTTGCAGGTGCAGGCCACAGTGGCGGTGGCGCCAGA----GAAG
GTAGTTGTCCCTGTCGTCACCCGTCCGATCGACGGAGAAGTGCGATGCGATGCGCTGCGGTACGTACGGTGCACGGGGCG
CCCATCCGCGTCGCGCCCCCAC----CGGCACAGTGCACGGCGATACGTGCGTGAATACGTGATGGCAACGGCGA--GGC
TGGCCGGGCCGGGGCGTGGGGTAGCGTTTTGGTGGGTGGTGCCCAAGGGAGCG----ATCTCCGCCGACGCGCGCGGCCA
TGCCGGCATTGAATGGGGCCGTGAGCTGTGCGCGAGGTGGGCCGGCGCGCGCCGACTGCACGTGTCCCCGCCGGGCGTCG
CGCCACTCCTACTCTTTTTTTTTTTGG-----TTATTA------------------------------------------
----TACTCTTTGGTTTCTGTCCGTGACACCTGGACGGGGTCAAAAAGTTTGTTACTGCCACGGTGGAGGGTCAAGCTCG
TCCCGCT-----GCTGGGCTCGCACACAAGTCAACTGCGCGGCGATCATTGCT----CTGCTCACATTGTCCAACTTGAT
CTGC---TGCT------ACTACTCGAGTTTGACTGAGCTGTCCGCTTTGCAAGGTCACGGGCAGGATGGTCAACCCAACC
AACCAACAAAAGGTATTGTACACGTACAAAGCGCTCGTGTACGTACGTACTTTTGCCAGAGTCTTCCATGGGAAGATGAT
CTGCCCGGGC----------CTGCG-------------------------------------------------------
------------------------------------------------------CTCCTTGCTCTGCAAGACTGCAAGCT
CAGTGC-------TCCAAAGTGAAAAAGTAATCCAACGTGTCCGTCGAGCCAGCTGCCGCCTTGCCCCAACG--------
----TATCCAGTATCCACTCATCCCCATGCCTT----GCCCACCCGTGCGGGCTCTGCCGAGCCACATGACACCACCCTA
TAAAAACAGCGCTCCGCGCTCCACTTGCCACACCACGGTCCACGCCACCAGCTCCAGGAGACTGCGACGACGTACGCCGG
GATA----ATCTCCAGCAA---------------CAGCAAGCCGGACGCACATGGCAGCGGGGTTCCGCCGGCGGCTCGC
CTGCCTCACCGCCCCCAGGGCCTCCTCCTACCTCCGCCGCACGCGCCACAAGAAGCTCTCCTACGCGCGCGCGCGCTCCG
CCAGCCTCCCCGGCCGCTTCCACCCGGTCGTCGCCGGCCTCCACGACGCCGCCAATGACCTCCTCGGGTGGACCGAGGCG
C------CGGCGCAGGCTGGCACGGCGTGGATCGGTGACGGTGTGGGATACCTCGGCCGGCTCCTGGCCGGCCTCACCGA
CCTGCTCCACCACCCGCAGGCGCAGGACCCGCTCCGGCACTCGCGGCGCCCGGGCGGCAAGACGGCCGCGCCGTGGGCGG
AGCGGCTGCTGGACGACCTCCTCCTCCTCGCCGACGCGCACGGCTGCTTCCGCGAGGCACTCCTGTCCTTGAAGCAGTTG
CTCGCCGAGGCCCACGCCGCGGTCCGCCGCCGCGACGCCGCGCGCCTCGCAGCAGCGCTGCGCGCGCGCCGTCGGTCGGA
CCGCGACATCTCGCGCCTCGCCTCCACATTGCGCGCACTCTCCCACCGTTCTTGCTCCTCCGCCGCGTCGACGTCCGACT
CCGGCGAGGCGGCGCTCGCCGAGGCCGTCGCGGCCGCCACCTGCGCCGCGGCGGCCGCCTCCGCCGCAATCTTCGCCGGC
CTCGCTTCCGCGTCCGCCTCCTCCGCATCGCGCGCATTGACCTCCCCGACATCGGCCTCTTCTCCCGCGAAGGCCGCGCC
GGTGTGGTGGGTGTCCGACCTCCTACGCTGGCGGCGGCGCACGGTGTCCGTCGCCGCCTGCGAGTCCTCCGGATCGCCCC
GTGGCACCAAGGAGACACCTTCGGAAGAATGCTGCGACGAGGAGGAGGACGAGAGGAGGGCAGCCATGGAACGGCTGCGG
GGCCTCGAGGAGTGCGTCGTGGCCGCCGCGGACGGCTGCGAGCAGGTGTACCGCGCGCTCGTGAACGCGAGGGTGTCGCT
GCTCAACGTCCTCACGCCCTGCTTTTGA-------CGGCCTGATAAGACAATGTTGATTGATTTGATTCCATTGATCTTT
GTTAGCTTCTTGTAGCT--TGTATACATGATGTACAGAGATCGTTTCAAAATGAAACGAGATTGTAATTAGGCGAAATGC
TTAGTAAATT-------------------------------------------TTTTGTTCTTGATTGATTGGAAACGTC
TCGTCCAAATTTTGCAGTTGTTCTACG-----------------------------------------------------
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-------------------------------------------------------------------------TAGATCC
GAAGGTAAATCAGAACGTATACTCA-------------------------------------------------------
-----------TCTTGGGTGCATTTTGAAAAGGTTATTTGCTTCAATTGCCATTACGGTAAAGTTTAGTTCTCCGGTGAC
ATAAGCCAATTTTGTGTG----------------------------------------------------TGTGGATAAG
TTAGCTATGCC--ATGCCATCCTCAACTATTGCCGAGTGTAAGTGACTGTGTACATTTGGACTCTTGCACCGTCTAAACT
GTTTACTAGATATTTTCTGGTCCCTTGAATATCATAGGCCGACATGGTAGTGGGATCGTAACTGTTTGGATTTTGGTCGC
TTGCTCCGACATGGTGGTGGGATCACATCTAGCACTAGCAGTCCAGGATTATTCCAAGAAAGAAAAGAAATGGACGGG--
AAAATCTCACCCAGGCAGATTCCCTAACCTACCTTTATATTGGAAAAGAATTCTATGAGACCAGGTCTCACAGGTTAGCA
GGTGAGACCCATCCTGATGGATGACACGTGGCATTCACAAATCACAAAGCATTTACCACACCCCCACCTGAAATCAGGGG
AGGACAGATTAGATACTTTGTGATTTGTGAATGCCACGTGTCATCCATCAGGGCGGGTCTCACGTGCTTTATATGAGACC
TGGTCTCATATAATTTTTTTCCCTTTATATTTGGTGGAAGGTGGAGATTTTACATTGCACTACATCCCTGAACTTTTTTG
GCGCCACAAACATTTCCTCTTTCGCCCGTCCCTCCCGTCTGCGTCGCCATCGCCACTGCGCC-CCTTCCTTCGGCCGTGG
CTCCAACAATAACGTGAATTGAAA-----------------
>chr5A_1
TTCTCCGGTCCAGATACTGCACCAGCAAGGCGGTTGAGGATTGACAGGTAGATCAACATTGAAAGCTTGAGGTCGACACG
GCCATAGAC---------------CGCTACCTCGCAGTTGCAGGTGCAGGCCACAGTGGCGGTGGCGGCAGAGAAGGAAG
GGAGATGTCCCCGTCGTCGCCCGTCTGCTCGAGGCGAGGCGAGC-------------CGGTACGTACGGTGCACGGGGCG
CCCATCCGCGTCGCGCCCCCACGCCACGGCACAGTGCACGGCGATACGTGCGTGAATACGTGATGGCAACGGCGA--GGC
TGGCGGGGGCCAGCCATGGGGGTGGGGGTGGGTGGCCCAAGGG--AGGGAGCG----ATCTCCGCCGACGCGCGCGGCCA
TGCCGGCATTGAATGGGGCCGTGAGCTGTGCGCGAGGTGGGCCGGCGCCCGCCGACTGCACGTGTCCCCGCCGGCCGTCG
CGCCACTCCTACTCTTTGGGGTTTTTC-----TTTTTTTGTGCGCATACTACTACTCTTTTTTTTTTTGCGGGGGGCATA
CTACTACTCTTTGGTTTCTGTCCGTGACACCTGGACGGAGTCAAAAAGTTTGTTACTGCCACGGTGGAGGGTCAAGTTCG
TCCTGCTGCCGGGCTGAGCTCGCACACAAGTCAACTGCGTGGCGATCATTACTCTAGCTGCTCACATTGTCCAACTTGAT
CTGC---TGCTGCTACTACTACTTGAGTTTGACTGAGCTGTCCGCTTTGCAATGTCACGGGCAGGATGGTCAACCCAACC
AACCAACAAAAGGCAATGTACACGTACAAAGTGCTCGTGTACGTGCGTACTTTACCCAGAGTCTTCCATAGCAAGATGAT
CTGCCCGCCCGGGCCTCGCCGATGCAGCTTCGGTTGCGGCACATGCCTGCCTTTGGATCACTGACATGTGGGCCCACATG
CCAGTAATTCAAAGGCATGTGCTTTAAGGCACCGAAGCATCGTCCGGGCCTCGCCTCCTTGCTCTGCAAGACTGCAAGCT
CGGTGGTCCAATTTCCAAAGTGAAAAAGTTATCCAACGTGTCCATGGAGCCAGCTGCCGCCTTGCCTTGCCTGCCACACC
ACACTATCCAGTATCCACTCATCCCCATGCCGGCCACGCCCGTCCGTGCGGCCTCTGCCGAGCCACATGACACCACCCTA
TAAAAACAGCTCGCCGCGCTCCGCTTGCCACGCCACGGTCCACGCCGCCAGCTCCAGCAGACCGCGACCACGTACGCCGG
GATCGATCATCTCCAGCAA---------------CGGCAAGCCGGCCGCAGATGGCAGCGGGGTTCCGCCGGCGGCTCGC
CTGCCTCACCGCCCCCAGGGCCTCCTCCTACCTCCGCCGCACGCGCCACAAGAAGCTCTCCTACGCCCGCGCCCGCTCCG
CCAGCCTCCCCGGCCGCTTCCACCCGGTCGTCGCCGGCCTGCACGACACGGCCAACGAGGTGCTCGGGTGGACCGAGGCA
C------CGGCGCAGGCTGGCACGGAGTGGATCGGTGACGGTGTGGGACACCTCGGCCGGCTCCTGGCCGGCCTCACCGA
CCTGCTCCACCACCCGCAGGCGCAGGACCCGCTCCGGCACTCGCGGCGGCCGGGCGGCAAGGCGGTCGCGCCGTGGGCGG
AGCGGCTGCTGGACGACCTCCTCCTCCTCGCCGACGCCCACGGCTGCTTCCGCGAGGCGCTGCTGTCCCTGAAGCAGCTG
CTCGCCGAGGCCCACGCCGCGGTCCGCCGACGCGACGCGGCGCGCCTCGCGGCCGCTCTGCGCGCGCGCCGCCGGTCCGA
CCGCGACATCTCCCGCCTCGCCTCCACATTGCGCGCTCTCTCCCACCGTTCTTGCTCCTCCGCCGCGTCGACGTCCGACT
CCGGCGAGGCCGCGCTCGCCGAAGCCGTTGCGGCCGCGACCTGCGCCGCGGCGGCCGCGTCCGCAGCCATCTTCGCCGGG
CTCGCCTCCGCCTCCGCCTCCTCCGCATCGCGCGCATTGACGTCCCCGACGTCGGCCTCTTCTCCCGCGAAGGCCGCGCC
GGTGTGGTGGGTGTCCGACCTCCTGCGCTGGCGGCGCCGCACGGTGTCCGTCGCCGCCTGCGAGTCCTCCGGATCGCCCC
GTGGCACCAAGGAGACACCTCCGGAAGAATGCTGCGACGAGGAGGAGGACGAGAAGAGAGCGGCCATGGAACGGCTGCGG
GGCCTCGAGGAGTGCGTCGTGGCCGCCGAGGACGGCTGCGAGCAGGTGTACCGCGCGCTCGTGAACGCGCGGGTGTCTCT
GCTCAACGTCCTCACGCCCTGCTTTTGA-------CGGCCTGACAAGACAGTGTTGATTGATTTGATTCCATTGATCTTT
CTTAGCTTTTTGTAGCTTGTGTATACTTGATGTATAGAGATCGTTCCAAAATGAAACGAGATTGTAATTAGGCGAAATGT
CAGTGGATATTTTGCTCTTGATTGACTGTTATTAGGCGAAATGTCAGTGGATATTTTGTTCTTCATTGACTGAAAACGTC
TCGTCCAAATTTTGCGGTTGCTCTCTCTATAAG-------------------TCATTTTAACTCCGCCTATGTTGTCTCA
ACATAGCCGGTCCCAAGTTCGGATAAAGGAGGAGGGTTGTGATAGGCTTGGCGAGCCAACGTAAAAACTCAGCCACTTTT
ATGGAGATGAAACCCAAAAGATTTTCGTTGGGGCGTAACCCTCTCAGCGACGCGCCACATCGGAACCCGGGTGTGGTGGA
AAATGGGCAAGGGCCGGGCCGTCACCCCCCAAGTGGCGCGCTGTATCTTGATCCGGATACGATGGCAAGTGAGCGAGGAT
CGGGTCGTCGCATCCTTAGTGGCGCGCTACATTGGCGCCCGGATGTAGTGGAAAATGAGCAAGGGTCTTCGCATTTGACT
CGACGAGTGCGAAGGGTAAGGAAGCTAGCCGAGCCTAGGAGGATTCGCTTAGGTAGCTGGAACGTAGGGTCTCTGACAGG
GAAGCTTCGCGAGCTAGTTGATGCAGCAGTGAGGAGAGGTGTTGATATCCTTTGCGTCCAAGAAACCAAATGGAGAGGAC
AGAAGGCGAAGGAGGTGGAGGATACCGGCTTCAAGCTGTGGTACACGGGGACGGCTGCAAACAGAAATGGCGTAGGCATC
TTGATCAACAAGAGCCTCAAGTATGGAGTGGTAGACGTCAGGAGACGTGGGGACCGGATTATCCTGGTCAAGCTGGTAGC
TGAGGACTTGGTTCTCAATGTTATCAGCGCATATGCCCCGCAAGTAGGCCACAATGAGAACACCAAGAGGGAGTTCTGGG
AAGGCTTGGAAGACATGGTTAGGAGTGTACCGATTGGTGAGAAGCTCTTCATAGGAGGAGACCTCAATGGCCACGTGGGT
ACATCTAACACAGGTTTTGAAGGGGCGCATGGGGGCTTTGGCTATGGCATCAGGAATCAAGAAGGAGAAGATGTCTTAAG
CTTTGCTCTAGCCTACAACATGATTGTAGCTAACACCCTCTTTAGAAAGAGAGAATCACATCTGGTGACTTTTAGTAGTG
GCCAACACTCTAGCCAGATTGATTTCATCCTCTCGAGAAGAGAAGATAGGCGTGCGTGCCTAGACTGTAAGGTGATACCT
GGGGAGAGTGTTGTACCCCAACATAAGCTGGTGGTTGCTGACTTCCGCTTTCGGATTCGTGTCCAGCGGGATAAGCGTGC
CAAGGTCGCTAGAACAAAGTGGTGGAAGCTCAAGGGGGAGGTAGCTCAGGTGTTCAAGGAGAGGGTATTTAAGGAGGGCC
CTTGGGAGGAAGGAGGGGATGCGGACAATGTGTGGATGAAGATGGCGACTTGCATTCGTAAGGTGGCCTCGGAGGAGTTT
GGAGTGTCCAGGGGAAGTAGAAGCGAAGATAAGGATACCTGGTGGTGGAATGATGATGTCCAGAAGGCGCTTAAAGAGAA
GAAAGATTGCTTCAGACGCCTATACCTGGATAGGAGTGCAGACAACATAGAGAAGTACAAGATGGCAAAGAAGGCCGCAA
AGCGAGCTGTTGGTGAAGCAAGGGGTCGGGCATATGAGGACCTCTACCAACGGTTAGGCACGAAGGAAGGTGAAAGGGAC
ATCTATAAGATGGCTAAGATCCGGGAGAGGAAGACGAGGGATATTGGCCAAGTCAAATGCATTAAGGACGGAGCAGGCCA
ACTCTTGGTGAAGGACGAAGAGATTAAGCATAGATGGCGGGAGTACTTCGACAAGCTGTTCAATGGGGAGAATGAGAGTT
CTACCATTGAACTGAATGACTCCTTTGATGAGACCAGCATGCGTTTTGTGCGGTGCATCCAGGAGTCTGAGGTGAAGGAG
GCTTTAAAAAGGATGAAAGGAGGCAAGGCGATGGTCCCTGATTGTATCCCCATTGAGGTGTTGAAAGGTCTCGGGGACAT
AGCGATAGTATGGCTAACCAAGCTTTTCAACCTCATTTTTCGGGCAAACAAGATGCCAGAAGAATGGAGACAGAGTATAT
TAGTACCAATCTTCAAGAACAAGGGAGATGTTCAGAGTTGTACTAATTACCGTGGAATTAAGCTGATGAGCCATACAATG
AAGCTATGGGAGAGAGTCATTGAGCACCGCTTAAGAAGAATGACAAGCGTGACCAAAAATCAGTTTGGTTTCATGCCTAG
GAGGTCGACCATGGAAGCCATTTTCTTGGTACGACAACTTATGGAGAGATATAGAGAGCATAAGAAGGACTTGCATATGG
TGTTCATTGACTTGGAGAAGGCCTATGATAAGATACCGCGGAATGTCATGTGGTGGGCCTTGGAGAAACACAAAGTCTCA
GCAAAGTACATTACCCTCATCAAGGACATGTACAATAATGTTGTGACAAGTGTTCGAACAAGTGATGTCGACACCGATGA
CTTCCCGATTAAGATAGGACTGCATCAGGGGTCAGCTTTGAGCCCTTATCTTTTTGCATTGGTGATGGATGAGGTCACAA
GGGGTATACAAGGAGATATCCCATGGTGTATGCTCTTTGCGGATGATGTGGTGCTAGTTGACGATAGTCGAACGGGGGTA
AATAGGAAGTTAGAGTTATGGAGACAAACCTTGGAATCGAAAGGGTTTAGGCTTAGTAGAACTAAAACCGAGTACATGAT
GTGCGGTTTCAGTACTACTAGCTGTGAGGAGGAGGAGGTTAGCCTTGATGGCTAGGTGGTACCTCGGAAGGACACCTTTC
GGTATTTGGGGTCAATGTTGCAGGAGGATGAGGGTATTGATGAAGATGTGAACCATCGAATCAAAGCCGGATGGATGAAG
TGGCGCCAAGCTTCTGGCATTCTCTGTGACAAGAGAGTGCCACAAAAGCTAAAAGGCAAGTTCTACAGGACGGCGGTTCG
ACCCGCAATGTTGTATGGCGCGGAGTGTTGGCCGACTAAAAGGCGACATGTTCAACAGTTAGGTGTGGCGGAGATGCGTA
TGTTGAGATGGATGTGTGGCCACACGAGGAAGGATCGAGTCCGGAATGATGATATACGAGATAGAATTGGGGTAGCACCA
ATTGAGGAGAAGCTTGTCCAACATCGTTTGAGATGGTTTGGGCATATTCAGCGCAGGCCTCCAGAAGCTCCAGTGCATAG
CGGACGGCTAAAGCGTGCGGAGAATGTCAAGAGAGGGCTGGGTCGACCGATTTTGACATGGGAGAAATCCGTTAAGAGAG
ACCTGAAGGATTGGAGTATCGACAAAGAGCTAGCTATGGACAGGGGTGCGTGGAAGCTTGCTATCCATGTGCCAGAGCCA
TGAGTTGGTTGCGAGATCTTATGGGTTTCACCTCTAGCCTACCCTAACTTGCTTGGGACTAAAGGCTTTGTTGTTGTTGT
TGTTCTCTCTATAAGTCATTTTCCATATTTCAATATGGACTACATACGAATATATATAAACATATTTTAGAGTATAGATA
CATTCATTTTGTTTCGTACGTAGTTTATATTGAGTCTTTAAAAGGTTTTATATTTAGAAACAGATGGAGTAGTTAGATCT
GAAGGTAAATCAGAGCGTATACTCA-------------------------------------------------------
-----------TTTTGGGTGCTTTTTGAAAAAGTTATTTGCTTCAATTGGCATTACCCTAAAGTTTAGTTTTCCAGTGAC
ATAAGCCAATTTTGTGTG----------------------------------------------TGTGTGTGTGGATAAG
TTAGCTCTGCC--CTGCCATCGTCAACTATTGCCGAGTGTAAGTGACTGTTTAGATTTGGACTCTTGCACCGCCTAAACT
GTTTACTA-ATATTTTCTGGTCGCTTGAATATCATAGGCCGACATGG-GGTGGGATCGTAACTTTTTGGATTTTGGTCGC
TTGCTCCGACATGGTGGTGGGATCACATCTAGCACTAGCAGTCCACGATTATTCCAAGAAAGAAAAGGAATGGAC-GG--
AAAATCTCACCCAGGCAGATTCCCTAACCCACCTTT--------------------------------------------
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-------------------------TATATTTGGTTGAAGGGGGAGATTTTACAGTGCACTACATCCCTGGATTTTTTTG
GCGCCACAAACGTTTCCTCTTTCGGCCGTCCCTCCCGTCTGCGTCGCCATCGCCACTGTGCCACCTTCCTTCGCCCGTGG
CTCCAGCAATACTGTGAATTGAAA-----------------
>SNPs
--------------------------------------------------------------------------------
----------------S-----------------------------------S-S-------------S-------S---
-S------------------------------------------------------------------------------
---------------------------------------------------------------------------SS---
S----S-S---S-SS------S----------------------S--S-----SSSS-----------------------
--------------------------------------------------------------------------------
--------------------------SSSSSS----------S-------------------------------------
--------------------------------------------------------------------------------
-S--SSS---------S---------------------------------------------------------------
----SSS-------------------------------------------------------------------------
-----S--------------------------------------------------------------S-----------
SSSS-SS--S--S-SSS--S------------------------------------------------------------
----------------------------------------------------------------------SSSSSSSS-S
S-SSS-S-------------------------------------------------------------------------
-------------------------------S------------------------------------------------
----------S-------------------------------------------------------------S-------
------------S---SS-SSSSSSSSSSSSSSS----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------S---------------
-SSSSSS----------S-----------------S-----S-----S--------------------S--S--------
---------------------------------------------S----------------------------------
----------------------------------------------------------------------S---------
-----------------------S--------------------------------------------------------
------------------------------------S--------------S----------------------------
-------------------------------------------------------------------------------S
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------S----------------------
-------------S------------------------------------------------------------------
----------------------------SSSSSSS-----S----S--------S----SS--------S----------
-----S---S----------------------------------------S-----------------------------
-S------------------------------------------------------------------------------
----------------------------S-S--SSSSSSSSSSSSSSSSSSS--S----S-------S---SSSS-S---
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------------S-S--S---S----S---S--SSSS-SSSSS-SSS-S--S-SSSSSS--S-SSSSSS-S-SSSS----
SSS--SS-SSSSS-S-S-SSSSSSS-SSSS-SS----S-S-S-SSS----------------------------------
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------------------------------------------------------------------S----SSS---S-S
-S--S-S---------SSSS-SSS-SSSSSS-SSS-SS-SSSS---S-S-S-SSS-S---SSSSSSSS--S---------
--------------------------------------------------------------------------------
------------SS-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS-------S-------------S-------S---------------------------------------
-------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S------
--------SSSSS--------S-------S-------------S------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------S---------SS
-----------------------------------------SS-------------------------------------
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----------------------------------------S---------------------------------------
--------------------------------------------------------S-----------------------
------------------------SSSSSSSSSSSSSSSSS
>forward_1041
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-------------------------------------------------------------CTCTGCAAGCTCAGTGTCC
A-------------------------------------------------------------------------------
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>reverse_2349
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----------------------------GTTTTGACGGCCCGATAGGA--------------------------------
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>forward_2218
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--------------------------------------GAGGAGGAGGACGAGAGGAA----------------------
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>reverse_6445
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--------------------------------------------CGGTGGTGGGATCGTAACTG----------------
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-----------------------------------------
