>input_sequence_55480
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ATGGCTCCTCTTTCGTCCAAGGCCGTTGCACTCGTTGCACTGTTCTCCCTCCTCGTCACCTACGCC---
GCCGGCGCCGGGAACTTCAACGACTCCGCCTTCACCGCCGACCCCAACTGGGAGGACGCCAGGGCCACCTGGTACGGCGC
CCCCACCGGCGCCGGCCCTGACGACGATGGTACGTCTGCATGC----GCCGTGCCGGTGCATGGCGCCGCGGAGTTCTCT
CTCCATTAATTGAACGTTTGTGTAATGACATGCGGTGATGGATGTGCATTCAGGTGGTGCCTGCGGGTTCAAGAACACCA
ACCAGTACCCCTTCTCCTCCATGACATCGTGCGGCAACGAGCCCATCTTCAAGGACGGCAAGGGGTGCGGCTCCTGCTAC
CAGGTAGCTAGACTAGCTCGTT---------------------------------------------CGTCATATTGTTG
GTGCTTTGCCCCTGCCGTACGTGGTGGAAATGGAGCTGGTGACACAGTGCTAATCTTGACTTCTGATCGTTTACTATTGC
CTTTCCAGATACGATGCACCAACGACCAGTCCTGCTCCGGCAACCCGGAGACGGTGGTCATCACCGACATGAACTACTAC
CCGGTTGCCAAGTACCACTTCGACCTGAGCGGCACCGCCTTCGGCGCCATGGCCAAGCCCGGCCTCAGCGAGAAGCTCCG
CCACTCGGGCATCATCGACATCCAGTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--AGAGGTCGGTGGCATTTCATCATA---TCGTTGCACGAATCCTATCTGGCCCTACGTGAACGATGAACAGTATCATAC
TCTATATAACCAGTGCTT---TTGCC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAACAA
AACTTTCACGACCGCGACCGGTTTAACTGGGACCCAAATAGATTCGCTGCGAATAA---TACTCTATTTTGAGCACCGTC
GCTTCACACTTATTTGCCGTCGTCCCGGCTCGGTCACAGACCAAGTTACAATGGCACATGGGTTGCTGATTGCTGCTGCT
GATGATTGGTGCAGGGTGCCGTGCGAGTTCCCCGGTCTCAAGGTGACCTTCCACGTGGAGCAGGGGTCGAACCCGGTGTA
CTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGGAGGCCAACTC--------
-CGGGACGTGGACGCCGATGCGCGAGTCATGGGGCTCCATCTGGCGGCTCGACTCCGGCCACCGCCTCCAGGCGCCCTTC
TCCATGCGCATCACCAACGAGTCCGGCAAGACGCTGGTGGCCGACAAGGTCATCCCGGCCAACTGGGCGCCCAGCACCTT
CTACCGCTCCATCGTCCAGTACAGCTGA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>chr1D_1_TraesCS1D01G215400
TTGATTCCAACAAGAGTCAGTCAGGCCAACGTCCACGCTTTAATTGTATTGCAAACT----------TGCTGTTCCCGCC
CGAATCTCTCCTTCCTAACGCGGCATCATCGCCAAAGGCACCACTTAGCTGTACGTTCCTGAAAGAGAATACGATTTTCC
ATAGTA---CTGTGCGTATGCGTATCTCTTTCTAGCAGAAATGGAACACAGCTCAGCGCATCAGCCAGAGCAGGGCAGGT
AGGGATGCAATGGGACGGCGTCCGCATGTCCACGACCATCATGGAAGC-AAAAATTACAGGACAGCGTCCGCATGTCCAC
GACTGTCTGTGAACAGAAAAATGCAGACGATGTCCGCCTTCACCCCTAAGGGCGAGCTTTGCTACATCTACGCAAAAGTT
TTATGAAACTTATAAAGAAATTGAATTTTTTGTCCCACTTTTTTTTCTAACTTTGATCATTTGCCCACCCCTGAGAATTA
CAGGTGGGGTCGGGGACACTTGCCATTGAGACAAGTCTGGAGCAAATTATCAAACCCCATATAAAGTGGGACAAAAGATC
CAATCCTCATAAACTTATATACG---------------------------------------------------------
----------------------------------------------AGCTTACATAGTCTGATTTGGTTGGAAGTAAAAA
ACGCTTAGGCCCACCCGTGAAATTCAAGGGGAAGGTGATTCGTTTCTAGAAAGGAAAGGT-CGTAGCATCATG--TAAGA
GGTTACTTAGGTGTAGCATTGTTGCTCAAGGGCAGGTACGCACTACGCAGTGTGGACAGAAACATGCAATGTGTAACT--
----GCCAAGCCGTGATTTCTCGCAGGATTTGCTCCCGTAGCCATGTGACCCCTACACAAAGCACGTCGTCGGGTGCAAC
AACCGTGGATGGCGATCGCGTCGCCCTGCACTGCGCCTGCCTATAAATACCCCGGCAATAT-GATACTCCCAGAACATCA
AAGCATA----GTTGAGCCTCCCAGCCCGACCTGGTCACAGTGCGCTGGTACACTACCCCCACAAGCTCGAAGAAGCAGT
GGTACTTTGACATGGCTCCTCTTTCGTCCAAGGCCGTTGCACTCGTTGCACTGTTCTCCCTCCTCGTCACCTACGCC---
GCCGGCGCCGGGAACTTCAACGACTCCGCCTTCACCGCCGACCCCAACTGGGAGGACGCCAGGGCCACCTGGTACGGCGC
CCCCACCGGCGCCGGCCCTGACGACGATGGTACGTCTGCATGC----GCCGTGCCGGTGCATGGCGCCGCGGAGTTCTCT
CTCCATTAATTGAACGTTTGTGTAATGACATGCGGTGATGGATGTGCATTCAGGTGGTGCCTGCGGGTTCAAGAACACCA
ACCAGTACCCCTTCTCCTCCATGACATCGTGCGGCAACGAGCCCATCTTCAAGGACGGCAAGGGGTGCGGCTCCTGCTAC
CAGGTAGCTAGACTAGCTCGTT---------------------------------------------CGTCATATTGTTG
GTGCTTTGCCCCTGCCGTACGTGGTGGAAATGGAGCTGGTGACACAGTGCTAATCTTGACTTCTGATCGTTTACTATTGC
CTTTCCAGATACGATGCACCAACGACCAGTCCTGCTCCGGCAACCCGGAGACGGTGGTCATCACCGACATGAACTACTAC
CCGGTTGCCAAGTACCACTTCGACCTGAGCGGCACCGCCTTCGGCGCCATGGCCAAGCCCGGCCTCAGCGAGAAGCTCCG
CCACTCGGGCATCATCGACATCCAGTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--AGAGGTCGGTGGCATTTCATCATA---TCGTTGCACGAATCCTATCTGGCCCTACGTGAACGATGAACAGTATCATAC
TCTATATAACCAGTGCTT---TTGCC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAACAA
AACTTTCACGACCGCGACCGGTTTAACTGGGACCCAAATAGATTCGCTGCGAATAA---TACTCTATTTTGAGCACCGTC
GCTTCACACTTATTTGCCGTCGTCCCGGCTCGGTCACAGACCAAGTTACAATGGCACATGGGTTGCTGATTGCTGCTGCT
GATGATTGGTGCAGGGTGCCGTGCGAGTTCCCCGGTCTCAAGGTGACCTTCCACGTGGAGCAGGGGTCGAACCCGGTGTA
CTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGGAGGCCAACTC--------
-CGGGACGTGGACGCCGATGCGCGAGTCATGGGGCTCCATCTGGCGGCTCGACTCCGGCCACCGCCTCCAGGCGCCCTTC
TCCATGCGCATCACCAACGAGTCCGGCAAGACGCTGGTGGCCGACAAGGTCATCCCGGCCAACTGGGCGCCCAGCACCTT
CTACCGCTCCATCGTCCAGTACAGCTGAAGCTGCTGAACTGAACCGAACTCATCATTTGGAATCAT-GCATGCATTGGCT
TGATTTGGTATCTGTACTATCATGGATCGTTTTGCATGG----GTACTACCGAGGAGGTTTTTGATTAA--TTAAGGTTG
GGTCG----TCGGGTGTCATGTAGGCGTCGTCGTGCATGTGTGTCTTGAATACGTCGGTGGGATATGGAGGAGGGGCACT
TTTGCATGTGCACTCCCGCGCCCACTGTCACTGTACCAGTGTGTAAGCAGACCATAAGTTATTACTGTTTGTGTGTACTC
CTGCTTAACTCTTGTCCCTCCTTCAGTCTCTCATCAGTACTGCCAGTACTCAACAGTTCGTATTGCCCTAGTACTTGTCA
AACTTGATTGTGCGCGCCAAGGATTAATTGCACGCCAGGAATTCGATCCTGACTTTCTAACGAACGTACGGCCACGGCAA
GTGGAAATTCTACTCCGTTCCGGTAGATTCGACGAT-CCTGGAAAGGTCGGTACGTCATAATTTTTGCAACGACCAAGCA
AAGCACGCAGTCGAGTATGTCTGCGTCATATCAGTTACCACCGACTAGCTAGTGCGTCTATCCAACGCAAAGGGTGCCAA
TCTCCCGGCACATGTCTTTCACTTTCAAAAGCTCCTTTTCTTTCCGTATGGTAACCACTAACCAATTCGTTCGTTCTATA
ACCGTCAGTCTTAGCTAC--CTAATGATAGTGAATGATTCGGATTAACTTTTACACGAGCGACT-GCCGGCAACATCGCC
GCCTAAAAGTTCACTCTAG--------------------CTAAGAAAGTTGTTTAACGACTAGCATGCATGCTAGTAGAG
ACCGCTGGATCGTCGCCGTAAATACTGGCGCTAAACTCTCCCAATCGCCGAGCTAGTCTTTGGTCATGTTCTTTTAGTGA
AATAACAGGACTCTGCTCCGTTTAGTCTTTGGTCAATGTTCTCAAATTAAACTACTCCTAAATGTGAACCAACCTACAGT
TGGATGGCTAAGAGGACAGTGTT
>chr1A_1
TTGATTCCAACAAGAGTCAGTCAGGCCAACGTCCACGCTTTAATTGTAACGCAAACATTGCTGTTCCTGCTGTTCCCGCC
CGAATCTCTCGTTCCTAACGCGGCATCGTCGCCAAAGGCAGCACTTAGCTGTACGTTCCTGAAAGAGAATACGATTTTCC
AGAGTA---CTG------TGCGTATCTCTTTCTAGCAGAAATGGAACACAGCTCAGAGCATCAGCCTGAGCAGGGCAGGT
AGGGGTGCAAGCTGACGGCGTCCCCATGTCCACGACCGTCGTCGAAGC-AAAAATTACACGACGGGGTCGGCATGTCCAC
GACTGTCCGTGAACAGAAATATGCAGATGATGT------------CTAAGGGCGAGTTTTGCTACATCTACGGAAAATAG
TCTTA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACTTATGTAGTACTCCCTCCGTTCCAAAATAGATGATCCAACTTTGTACTAACTTTATACTAACGCTA
GTACAAAGTTGAATCATCTATTTTGGAACGGAGGGAGTACAGTACAAGCTTACATGG-----------------------
----TCAGGCCTATCCGTGAAATTCAAGGGGAAGGTGATTAGTTTATACAAAGAAAAGTTACGTAACATCATG--TAAGA
GGTTACATAGGTGTATCATTTTTGCTCAAGGGCAGGTCCGCACTACGCAGTGTGGACAGAAACATGCAATGTGTAACT--
----GCCGAGCCGTGATTTCTCGCAGGATTTGCTCCGGTAGCCATGTGACCCCTACACAAAGCACGTCGTCGGGTGCAAC
AACCGTGGATGGCGATCGCGTCGCCCTGCACTGCGCCTGCCTATAAATACCCCGGCAATAT-GTTACTCCCAGAACATCA
AAGCATACATAGCTCAGCCTCCCAGCCCGACCTGCT--CAGTGCGCTGGTACACTACCCCCACAAGCTCGAAGAAGCGGT
GGTGCTTTGACATGGCTCCTCTTTCGTCCAAGGCCGTTGCACTCGTTGCACTGTCCTCCCTCCTCGTCACCTACGCCTCT
GCCGGCGCCGGGAACTTCAACGACTCCGCCTTCACCGCCGACCCCAACTGGGAGGACGCCAGGGCCACCTGGTACGGCGC
GCCCACCGGCGCCGGCCCCGACGACGACGGTACGTCCGTATGCGCCGGCCGGTGCA-TGCATGGCGCCGCGGCCTTCGC-
-----TTAACTGATCGTTTGTGTAATAACATGCGGTGATCGATGTGCATTCAGGCGGTGCGTGCGGGTTCAAGAACACCA
ACCAGTACCCCTTCTCCTCCATGACATCCTGCGGCAACGAGCCCATCTTCAAGGACGGCAAGGGGTGCGGCTCCTGCTAC
CAGGTAGCTACACTAGCTCGTT---------------------------------------------CGTCATATTTTTG
GTGGTTTGCCCCTGCCGTACGTGGTGGAAATGGAGCTGGTGACACAGTGCTAGTCTTGACTTGTGATCGTTTACTATCGC
CTTTTCAGATACGGTGCACCAACGACCAGTCCTGCTCCGGCAACCCGGAGACGGTGGTCATCACCGACATGAACTACTAC
CCGGTTGCCAAGTACCACTTCGACCTGAGCGGCACCGCGTTCGGCGCCATGGCCAAGCCCGGCCTCAGCGAGAAGCTCCG
CCACTCGGGCATCATCGACATCCAGTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--AGAGGTCGGTGGCATGCATTTCATCACTCGTTGCACGAATCCTATCTGGCCCTACCTGAACGATGAACAGTCTCATAC
TCTATATAACCAGTGCTTTTGTTGCC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAACAA
AACTTTCACGACGGCGACCGGTTTAACTGGGACCCAAATAGATTCGCAGCGAATAATACTACTCTATTTTGAGTACCGTC
GCCTCACACTTATTTGCCGTCGTCCCGGCTCGGTTACGAAGTAAGCTACAATGGCACATGGGTTGCTGATTGCTGCTGAT
GATGATTGATGCAGAGTGCCGTGCGAGTTCCCCGGTCTCAAGGTGACCTTCCACGTGGAGCAGGGGTCGAACCCGGTGTA
CTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGGAGGCCAACTC--------
-CGGGACGTGGACGCCGATGCGCGAGTCGTGGGGATCCATCTGGCGGCTGGACTCCGGCCACCGCCTCCAGGCGCCCTTC
TCCATGCGCATCACCAACGAGTCCGGCAAGACGCTGGTGGCCGACAAGGTCATCCCGGCCAACTGGGCGCCCAGCACCTT
CTACCGCTCCATCGTCCAGTACAGCTGAAGCTGCT---------------CATCATCTGGAATCATGGCATGCATTGGCT
TGATTTGGTATCTGTACTATCATGGATCGTTTTGCATGGGTACGTACTACCGAGGAGGTTTTTGATTAAGGTTAAGGTTG
GGTCGTCGATCGGGTGTCATGTAGGCGTCGTCGTGCATGTGTGTGTCGAATACGTCGGTGGGATATGGAGGAGGGGCACT
TTTGCATGTGCACTCCCGCGCCCACTGTCACTGTACCAGTGTGTAAGCAGACCATAAGTTATTACTGTTTGTGTGCACTC
CTGCTTAACTCTTGTCCCTCCTTCAGTCTCTCATCAGTACTGCCGGTACTCATCTCTTCGTATTGCCCTAGTACTTGTCA
AACTTGATTATGC------------------ACGCCAGGAATTCGATCCTAACTTTCTAACCAACGTACGGGCACGGCCA
GTGGAAATTCTACTCCGTTCCGGTAGATTCGACGAT-CTTGGAGAGGTCGGTACGTCATAATTTTTGAAACGACCAGAGA
AAGCACGCAGTCGAGTATGTCTGCGTCATATCAGTTACCACCGACTAGCTAGTGCGTCTATCGAACGCAAAGGGCGCCAA
TCACCCGGCACATGTCTTTCACTTTCGAAAGCTCCTTTTCTTTCCGTATGGTAACCACTAACCAATTCGTTCGTTCTGTA
ACCGTCAGTCTTATGGCTTGCTAATGATAGTGAATGATTTGTAGTAACTTTTACACGAGAGACG-GCCGGCAACATCGCC
GCCTAAAAGTTCACTCT------------CTTCCCTTTCCTAAGAAAGTTGTTTAAC---TGGCATGCATGCTACTAGAG
ACCGCTGGATCGTCGCCGTAAATACTGGCGCTAACCCCTCCCAATCGCCGAGCTAGTCTTTGGTCATGTT----------
--------------------------------------------------------------------------------
-----------------------
>chr1B_1
TTGATCCCAACAAGAGTCAGTCAGGCCAACGTCCACGCTTTAATTGTATTGCAAACT----------TGCTGTTCCCGCC
CGAATCTCTCCTTCCTAACGCGGCATCATCGCCAAAGGCAGCACTTAGCTGTACGTTCCTGAAAGAGAATACGATTTTCC
AGAGTAGTACTG------TGCGTATCTCTTTCTAGCAGAAATGGAACACAGCTCATAGCATCAGCGAGAGCAGGGCAGGT
AGGGATGCAAGCTGACGGCGTCCGCATGTCCACGACCGTCCTCAATGCAAAAAATTACATGACCGCGTCCGCATGTCCAC
-ACTGTCCGTGAACAGAAAAATGCAGACGATGT------------CTAAGGGCGAGCTTTGCTACATCTACGTAAAAAAG
TCTTATG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AAACTTATGTATG---------------------------------------------------------
----------------------------------------------AGCTTATGCGGTCTGATTTGGTTAAAAGTAAAAA
CGGCTCGGGCCCACCCGTAAAATTCAAGGGGAAGGTGAGTAGTTTATAGAAAGGAAAGTTAAGTAACATCATATCTAAGA
GGTTACGTGGGTGTAGCATTTTTGCTCAAGGGCAGGTACGCACTACGCAGTGTGGACAGAAACATGCAATGTGTAACTGC
CGATGCCGAGCCGTGATTTCTCGCAGGATTTGCTCCCGTAGCCATGTGACCTCTACACAAAGCACGTCGTCGGGTGCAAC
AACCGTGGATGGCGATCGCGTCGCCCTGCACTGCGCCTGCCTATAAATACCCCGGCAATATAGTTACTCCCAGAACATCA
AAGCATA----GCTCAGCCCTCCAGCCCGACCCGGT--CAGTGCGCTGGTACACTACCCCCACAAGCTCGAAGAAGCAGC
GGTACTTTAACATGGCTCCTCTTTCGTCCAAGGCCGTTGCACTCGTTGCACTGTCCTCCCTCCTCGTCACCTACGCC---
GCCGGCGCCGGGAACTTCAACGATTCCGCCTTCACCGCCGACCCCAACTGGGAGGACGCCAGGGCCACCTGGTACGGCGC
GCCCACCGGTGCCGGCCCCGACGACGACGGTACGTCCGTATGC----GCCGGTGCA-TGCATGGCGCCGCGGCCTTGGC-
-----TTAATTGATCGTTTGTGTAATAACATGCAGTAATCGATGTGCATTCAGGTGGTGCGTGCGGGTTCAAAAACACCA
ACCAGTACCCCTTCTCCTCCATGACATCGTGCGGCAACGAGCCCATCTTCAAGGACGGCAAGGGATGCGGCTCCTGCTAC
CAGGTAGCTAGACTAGCTCGTTGATTTTTTCATGACGAGGGTTATTATTTCTTAAAAAAACGACGATCGCCATATTGTTG
GTGCTTTGCCCCTGCT----GTGGTGGAAATGGAGCTGGTGAAACAGTGTTAATCTTGACTTCTGATCGTTTACTATTGC
CTTTTCAGATACGATGCACCAACGACCAGTCCTGCTCCGGCAACCCGGAGACGGTGGTCATCACCGACATGAACTACTAC
CCGGTTGCCAAGTACCACTTCGACCTGAGTGGCACCGCCTTCGGCGCCATGGCCAAGCCCGGCCTCAGCGAGAAGCTCCG
CCACTCGGGCATCATCGACATCCAGTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--AGAGGTCGGTGGCATTTCATCATA---TCGTTGCACGAATCCTATCTGGCCCTACCTGAACGATGAACAGTGTCATAC
TCTATATAACTAGTGCTT---TTGCC------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAACAA
AACTTTCACGACAACGACCGGTTTAACTGGGACCCAAATAGATTCGCAGCGAATAA---TACTCTATTTTGAGTACCGTC
GCCTCACACTTATTTGCCGTCGTCCCGGCTCGGTTACAGACTAAGTAACAATGGCACATGGGTTGCTGATTGCTTCTGCT
GATGATTGATGCAGAGTGCCGTGCGAGTTCCCCGGTCTCAAGGTGACGTTCCACGTGGAGCAGGGGTCGAACCCGGTGTA
CTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGGAGGCCAACTC--------
-CGGGACGTGGACGCCGATGCGCGAGTCATGGGGGTCTATCTGGCGGCTGGACTCCGGCCACCGCCTCCAGGCGCCCTTC
TCCATGCGCATCACCAACGAGTCCGGCAAGACGCTGGTGGCCGACAAGGTCATCCCGGCCAACTGGGCGCCCAGCACCTT
CTACCGTTCCATCGTCCAGTACAGCTGAAGCTGCTGAACTGAAC-----TCATCATTTGGAATCAT-GCATGCATTGGCT
TGATTTGGTATTTGTACTACCATGGATCGTTTTGCATGG----GTACTACTGAGGAGGTTTTTGATTAA--TTAAGGTTG
GGTC----ATCGGGTGTCATGTAGGCGTCGTCGTGCATGTGTGTCTTGAATACGTCGGTGGGATATGGAGGAGGGGCACT
TTTGCATGTGCACTCCCGCGCCCACCGTCACTGTACCAGTGTGTAAGCAGACCATAAGTTATTACTGTTTGTGTGTACTC
CTGCTTATCTGTTGTCCCTCCCTCAGTCTCTCATCAGTACTGCCAGTACTCATCAGTTCGTATTGCCCTAGTACTTATCA
AACTTGATTATGCGCGCCAAAGATTAATGA-ACGCCGGGAATTTGGTCCTGACTTTCTAACCAACGTACGGCCACGGCCA
GTGGAAATTCTACTCTGTTCCGGTAGATTCGACGATCCTTGGAAAGGTCGGTACGTCATAATTTTTGCAACGACCAAGCA
AAGCACGCAGTCGAGTATGTCTGCGTCATATCAGTTACCACCGACTAGCTAGTGCGTCTATCCAACGCAAAGGGTGCCAA
TCTCCCGGCACATGTCTTTCACTTTCAAAAGCTCCTTTTCTTTCCGTATGGTAACCACTAACCAATTCGTTCGTTCTATA
ACCGTCAGGCTTAGCTAC--CTAATGATAGTGAATGATTCGGAGTAACTTTTACACGAGACGAGAGCCGGCAACATCGCC
GCCTAAAAGTTCACTCTATCTAAGCTGGCCTTCCCTTTCCTAAGAAAGTTGTTTAAC---TAGCATGCATGCTAGTAGAG
ACCGCTGGATCGTCGCCGTAAATACTGGCGCTAACCTCTCCAAATCGCCGAGCTAGTCTTTGGTCATGTT----------
--------------------------------------------------------------------------------
-----------------------
>chr1D_1480
CTGACGTTTTTGTTGTG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TTTCAGATCAGATGCAGGAAGGACATGTCCTGCTCCGGCAGGACGGAGACGGTGATCATCACCGACATGAACTACTAC
CCGGTGGCGCCCTTCCACTTCGACCTCAGCGGCACGGCGTTCGGCAGGCTCGCCAAGCCCGGCCTCAACGACAGGCTCCG
CCACTCCGGCATCATCGACATCGAGTTCACACGGTAAGAAGAGCGAGCAACACCTGCAGCGCCGTAGCAGTACCAGTGCA
ACATTGAGAGAATTTGTACCGCCATTTTGCAAAATTCTTGGTTGAATTTGCTGTCCATCGTCCGGGCAGTTAAAAGTTGA
AAAAAAGTCGGGTGCATTGGATCCACCCAAACCCAACCGCCCGCATTACTCCTGGCCGACCGGACACGGGCGCCACACAC
ACACACACACACACACACTCTCCTCTGCCCTGCACATGCATGTGCAACAGCTAGTAGTAAGCACACAGGGCTCAGCTTTA
TTACTCGGGCCCAACCCACCCTCCTTTTGCAGCACGGCATATGCGTGCCCTGCCACCATACGCCACCGGCCAGCCCATCC
CCGTCTCGTATCACAGAGCAGCGGCTGGGCCCCTGGCCGAAAGATACAATATTCCGCCGCAACATCGAGCAAGGCAACAA
AACT-----------------------------------------------AATAA---TACGCATGGACTAGTAGACTA
CCAGCGGCAACTTCTTCCATACAACAATTTA---TACGAAGTACGATCTTGTGATGAAT---------------------
---------TGCAGGGTGCCGTGTGAGTTCCCGGGGCTGAAGATCGGGTTCCACGTGGAGGAGTACTCGAACCCCGTCTA
CTTCGCGGTGCTGGTGGAGTACGAGGACGGCGACGGCGACGTGGTGCAGGTGGACCTCATGGAGTCGCGGGGGCCGGGCG
GCGGCAAGTGGACGAGGATGAGGGAGTCGTGGGGCTCCGTGTGGCGCCTCGACTCCAACCACCGCCTCCAGGCGCCCTTC
TCCATCCGCATCCGCAACGAGTCCGGCAAGACGCTCGTCGCCAACAAGGTCATCCCGGCCAACTGGAGGCCCAACACCTT
CTACCGCTCCTTCGTGCAGTACAGCTGAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>SNPs
--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
-S----------SSSSSS--------------------------------------S-----------------------
----------SSS------------------------S--S-S----------------S---S----------------
-------S-------------------------SSSSSSSSSSSS---------------------------S----SSS
-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS--------S--S----------------------------------------------------------
-------------------------------------------------------S-------------SS---------
SS---S----------------------------------S----S------------S------S--------------
------S-------------S-----------------------------------------------------------
-------S------------------------------------------------------------------------
---------------------------------------------------------------S----------------
------------S-S---------------------SS------------------------------------------
------------------------------------------------------S-------------------------
--------------------------------------------------------------------------------
S-----------------S--------S--------S-S------------SSS-SS---------------SS---S-S
SSSSS--------S------------S------------S--------------------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------S----------------------------------S-------------------------S------
--S-------------------------------S------S--------------------------------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------SSSSS-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S---------------------------
---------S----------S-------SSS------------------------------S----------------S-
--------------------------------------S-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S---------------S---S----------------
------------------S--------------------------------------SSS--------------------
----------------------------------S-----------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS
>forward_475
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------ATCATTTGCCCACCCCTGAG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_1400
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GGATGTGCATTCAGGTGGTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_511
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGGGACACTTGCCATTGAGA-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_1685
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CCAGATACGATGCACCAACG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_512
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GGGACACTTGCCATTGAGAC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_2394
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CACCGTC
GCTTCACACTTAT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>forward_1421
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATGTGCATTCAGGTGGTGCC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>reverse_3210
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GTGCGCGCCAAGGATTAATT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
