>input_sequence_55479
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---------ATGGAGGTCCAGATGAGACGGGGCGGCGCGACGTGCCTGGTCCAGGTGGCGGCGGC---GGTCTCCTACGT
GGTGCTGATGGCGT------CGGCGGGGGTGCGCGCGCAGCTGCGGGTGGGGTTCTACGACAGCTCGTGCCCGGCCGCGG
AGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCCGCCAACCCGGGCCTCGCCGCGGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTCGGCGGCTGCGAGGCGTCGGTGCTGGTCGACTCCACAAAGGGCAACACGGCGGAGAAGGACGCCGG
GCCCAACACGAGCCTGCGCGGGTTCGAGGTCATCGACCGGATCAAGGCCCGGGTGGAGCAGGCGTGCTTCGGCGTCGTCT
CCTGCGCCGACATCCTCGCCTTCGCTGCCAGGGACAGCGTCGCGCTGGTACGTGC---AAAGCAAAGC----CATCATTA
GCCCCGGCTTTAAT-----CGGCTGCATTTTGTGGTTA--------ATATATAAACTGTCACTTTAGGAAACCAGACAGC
ACATGATCATATGGGTTTATCAGAATCTCAGTACGTAAAGCCTATGTGATCTGCCATCTGTGT-CCCCTACCTTTCTCCT
TTTCTCTCTGTGCACCACATGGACATGACGCTACTAGCTGCACCTGCATGCGCACACGATGCCTGCCGTTGTTTAGTCTG
TTAATCGTTGCTGATGGTGACTGTGTGTGCGCACGCAGACTGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGAGGGAC
GGGGGCGTGTCGCGGGCGCAGGACACGGGCGGTAACCTGCCGCCCCCGACCCCCAACGTGAACCAGCTCACCAAGATCTT
CGCCTCCAAGGGGCTCAACCAGAAGGACCTGGTGACCCTGTCCGGCGCGCACACCATCGGCGGCTCGCACTGCAGCTCCT
TCAGCAGCCGCCTGCAGACGCCGTCGCCGACAGCGCAGGACCCGACCATGGACCCCGGCTACGTGGCGCAGCTGGCGCAG
CAGTGCGGCGCGTCCGCCTCGCCGGGGCCGCTGGTGCCCATGGACGCCGTCACCCCCAACTCCTTCGACGAAGGGTTCTA
CAAAGGCATCATGTCCAACCGGGGCCTGCTCGCCTCCGACCAGGCGCTGCTCAGCGACGGGAACACCGCCGTGCAGGTGG
TCTCCTACGCCAACGACCCGGCCACCTTCCAGAGCGACTTCGCCGCTGCCATGGTCAAGATGGGCTACATCGGCGCGCTC
ACCGGCAGCAGCGGCAAGATCAGGGCCAACTGTAGAGTCGTATGA-----------------------------------
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>chr1D_1_TraesCS1D01G203700
GCTGGATTCGTTTCGTTCTAGCTGTGGCGCATTTGCTATT-CTGCATGCATCTCTACACTGACTGGATTGGATGGAGCTT
GCCTGTCAGGAATCGGGATTTGCTAGCTATGCATGCCGATGCCGTGTGTATCCGATGCCTG---CCCTTTTAGGCCTTTG
CTACATGCAGGAAAAAA-AA-GACACAGCAGCATCTAAAATCTAAAATAGAGTAAAGGTACTAATTGGACCATTCCGGTT
ATATAGTTAAGATTGAGCAATCGGATCCCCCCAACAACATGCAACGAGGCCTCAATGATTAAGCTTAGCTTGCTAACAGG
TACTGGTGGAGT-----------ATCTCACTACCAGAGAGGAACGAGACTACCAGCTCAGACAGAGTTGAATTACCAGGT
GTCAAGGAGACGCAGGTCATACTTCAGTGTTGGCAGA----AACTAAATCGTCCAAACAACACACAAGTACTAACTTTGT
ACAAAATCAGCGACACTTATTTTGAAGGAAGTAGTATCTGCCAATTCTTTTTAATTAGTTCTAGTGTCAGGACACCGCAG
TTCTTGCATGCACGACGCCGCCGTGGCATCACAAGATGCGGGAACAACCACCACTTCATCTTCCTAAGAG-AATGGCATG
CATACACAGCTCCGGGGGAATCCATGGCTCGACCGCGGCGTACTGCATGCATCTGCGCGCAGGTGAAAACATTGGAGTAC
CGATGTACCGCAGATCTCGCAGCCTTTCCATTGCCACCAATCATGGCAGAAAAGCCATGGCCTCGCCGCGGCCCCACTCT
CTCCACCACATATTTCCACTACCAACCCTTTTCCCCCTCCGGCCGCACATGCACCGACAATCGGTCGAGATTCCCCTTAA
TCCCT-----CCAATGCTTAATTGTAACCCTT-------CTATTTAACACGCTCCACTCATCAGCTCTCCCCTTCCTTAG
CAAGGAAGTATAG--------CTAAGCCAGTGTATAAAGAGGGTGTCAGTGCCACTGCCACCAGAGG----GAGTACGTG
C---CGGCAATGGAGGTCCAGATGAGACGGGGCGGCGCGACGTGCCTGGTCCAGGTGGCGGCGGC---GGTCTCCTACGT
GGTGCTGATGGCGT------CGGCGGGGGTGCGCGCGCAGCTGCGGGTGGGGTTCTACGACAGCTCGTGCCCGGCCGCGG
AGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCCGCCAACCCGGGCCTCGCCGCGGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTCGGCGGCTGCGAGGCGTCGGTGCTGGTCGACTCCACAAAGGGCAACACGGCGGAGAAGGACGCCGG
GCCCAACACGAGCCTGCGCGGGTTCGAGGTCATCGACCGGATCAAGGCCCGGGTGGAGCAGGCGTGCTTCGGCGTCGTCT
CCTGCGCCGACATCCTCGCCTTCGCTGCCAGGGACAGCGTCGCGCTGGTACGTGC---AAAGCAAAGC----CATCATTA
GCCCCGGCTTTAAT-----CGGCTGCATTTTGTGGTTA--------ATATATAAACTGTCACTTTAGGAAACCAGACAGC
ACATGATCATATGGGTTTATCAGAATCTCAGTACGTAAAGCCTATGTGATCTGCCATCTGTGT-CCCCTACCTTTCTCCT
TTTCTCTCTGTGCACCACATGGACATGACGCTACTAGCTGCACCTGCATGCGCACACGATGCCTGCCGTTGTTTAGTCTG
TTAATCGTTGCTGATGGTGACTGTGTGTGCGCACGCAGACTGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGAGGGAC
GGGGGCGTGTCGCGGGCGCAGGACACGGGCGGTAACCTGCCGCCCCCGACCCCCAACGTGAACCAGCTCACCAAGATCTT
CGCCTCCAAGGGGCTCAACCAGAAGGACCTGGTGACCCTGTCCGGCGCGCACACCATCGGCGGCTCGCACTGCAGCTCCT
TCAGCAGCCGCCTGCAGACGCCGTCGCCGACAGCGCAGGACCCGACCATGGACCCCGGCTACGTGGCGCAGCTGGCGCAG
CAGTGCGGCGCGTCCGCCTCGCCGGGGCCGCTGGTGCCCATGGACGCCGTCACCCCCAACTCCTTCGACGAAGGGTTCTA
CAAAGGCATCATGTCCAACCGGGGCCTGCTCGCCTCCGACCAGGCGCTGCTCAGCGACGGGAACACCGCCGTGCAGGTGG
TCTCCTACGCCAACGACCCGGCCACCTTCCAGAGCGACTTCGCCGCTGCCATGGTCAAGATGGGCTACATCGGCGCGCTC
ACCGGCAGCAGCGGCAAGATCAGGGCCAACTGTAGAGTCGTATGATCGGTCCATCCATGGCGACATGCATCAAGGGTCAT
CTTTCTCGTTTAGAAGAGCGGCGCTGGGTTGATTTGGATTGGACGTGGACCCGTGGTAGCATTTAGCGTTCTTATTTGAC
CATGTACGTAGGTACTCCGCCTATTCTTTTGCTCATCGATCGATCTGTGTTGATTCTTTTTCGGCTGAGGTGTGTGTGTC
TTTTGAGGAAATTGTAACTAGCTACTACCAGCT-------TTGTGAGTGTTCGTGTGCCAAATTGATGATACTAAATAAA
TAAAAATACAACGTTAATTATCTTGCAGTGATATTAAG------------------------ACGTGTTTGACCTTTGAA
CAGAGTATGATCCGGACCATCAATCGAAGCATGAAAAATGTCTTTCGAAAAAACAAGCATGAAAAATGCCATCGTGCATG
CTACCTTTTTCCTTGAAGGAAAGTCAACATGTTACATATCAAAGG-AAAATAAATTGATTACTGAAAATTTAAAATTC-T
TCTGCTTCATTTGTCATCACCTCACGCACTCACGCACTCTCTCTCTCTCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG-------------------------
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-------ACACAGGAAGAAGACCACACTGCCACTCGTCATGATTCTG---------------------------------
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-------------------------AAGAGTTGCCTAGTTGGGTTGTGGCAGCTCAGCAGCCCAATAAATCATCTGTTGC
CACGTTGTAAGGAAGAATTTTTATGACTTGTGTGAATAGTTTTAGTAG
>chr1B_1
GCTGGATTCGTTTCGTTCTAGCTGTGCCGCATTTGCTATT-CTGCATGCATCTCTACACTGACTA-----GATGGAGCTT
GTCTGTCAGGAATCGGGATTTGCTAGCATTGC------ATGCCGTGTGTATCCGATGCCTG---CCCTTTTAGGCCTTTG
CTACATGCAGAAAAAAA-AAGGACACAGCAGCATCTAAAATCTATAATAGAGTAAAGGTACTAATTGGACCATTCCGGTT
ATATAGTTAAAATTGAGCAATCGGACTCCCC---CAACATGCAACGAGGCCTCAATGATTAAGCTTGGTTTGGTCACAAA
TATAGTACTACTACGTACTACAAATCTCACTTCTGGAGACGAACAAGAATACCAGCTGAGACAGAGCTGAATTACCAGGT
GTCAAGGAGACGCAAGTCACA-TTCAGTCTTGGCAGTAATTAATTAAATCGTCCAAACAACAACGCGAGC----------
-----------------------------AGTATCTGCCAACTT-TTTTT----TTAGTTCTAGTGTCAGGACATGACAG
TTCTTGCATGCACGACGCCGCCGTAGCATTACAAGATGCAGCAACAATCACCACTTCATCTTCCTCGCAAAAATGGCGTG
CATACGCAGCTGTGGGGGAATCCACGGCTTGACGTAGTA-------------CTGCATGCAGGTGAAAACACCGGAGTG-
-------CCGCAGATCTCGCAGGCTTTCCATTGCCACCAATCATGGCAGAAAAGCCATGGCCTCGCCGCGACCCCACTCT
CTCCACCACATATTTCCGCCACCAACCCTTTTCCCCCTCCGCGCGCACATGCACCGCCAATCGGTCGAGATTCCCCTTAA
TCCCT-----CCAACGTTTAACCATAAACCTT-------CTATTTAACACGCTCCACTCATCAGCTCTCCCCTTCCTTAG
CAAGGAAGTATAG--------CTAAGCCAGTGTATAAAGAGGGTGTCAGTGCCACTGCCACCAGAGCGATCGAGTACGTG
C---CGGCAATGGAGGTCCAGATGAGACGGGGCGGCGCGACGCACCTGGTCCAGGCGGCGGCGGTGGTGGTCTCCTACGT
GGTGCTGATGGCGT------CGGCGGGGGTGCGCGCGCAGCTGCGGGTGGGGTTCTACGACAGCTCGTGCCCGGCCGCGG
AGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCCGCCAACCCGGGCCTCGCCGCGGGCCTCCTCCGCCTCCACTTC
CACGACTGCTTCGTCGGCGGCTGCGAGGCGTCGGTGCTGGTCGACTCCACCAAGGGCAACACGGCGGAGAAGGACGCCGG
GCCCAACACGAGCCTGCGCGGGTTCGAGGTCATCGACCGGATCAAGGCGCGGGTGGAGCAGGCGTGCTTCGGCGTCGTCT
CCTGCGCCGACATCCTCGCCTTCGCTGCCAGGGACAGCGTTGCGCTGGTACGTGC---AAAGCAAATCCATGCATCATTA
GCCCCGGCTTTAAT-----C--CTGCATTTTGTGGTTAATTAATATATATATAAACTGTCACTTTAGGAAACCACACAGC
ACATGATCATATGGGTTTATCAGAATCTCAGTACGTAAAGCTTATTTGATCCGCCATCTGTGTCCCCCTACCTTTCTCCT
TTTCTCTCTGTGCACCACATGGACATGACGCTACTAGCTGCACCTGCATGCGCACACGATGCC----GTTGTTTAGTCTG
TCAATCGTTGCTGATGGTGACTGTGTGCGCGCACGCAGACTGGCGGGAACGCGTACCAGGTGCCGGCGGGGCGGAGGGAC
GGGGGCGTGTCGCGGGCGCAGGACACGGGCGGCAACCTGCCGCCCCCGACCCCCAACGTGAACCAGCTCACCAAGATCTT
CGCCTCCAAGGGGCTCAACCAGAAGGACCTGGTCACCCTGTCCGGCGCGCACACCATCGGCGGCTCGCACTGCAGCTCCT
TCAGCAGCCGCTTGCAGACGCCGTCCCCGACGGCGCAGGACCCGACCATGGACCCCGGCTACGTGGCGCAACTGGCGCAG
CAGTGCGGCGCGTCCGCCTCGCCGGGGCAGCTGGTGCCCATGGACGCCGTCACCCCCAACTCCTTCGACGAAGGGTTCTA
CAAAGGCATCATGTCCAACCGGGGCCTGCTCGCCTCCGACCAGGCGCTGCTCAGCGACGGGAACACCGCCGTGCAGGTGG
TCTCCTACGCCAACGACCCGGCCACCTTCCAGAGCGACTTCGCCGCTGCCATGGTCAAGATGGGTTACATCGGCGCGCTC
ACCGGCAGCAGCGGCAAGATCAGGGCCAACTGCAGAGTCGTATGATCGGTCCATCCATGGCGACATGCATCAAGGATCAT
CTTTCTCATTTAGAAGAGTGGCGATGGATTAATTTGGATTGGACGTGCACCCGTGCTAGCATTTAGCGTTCTTGTTTGAC
CATGTACGTA-GTACTCCGCCTATTCTTTTGCTCATCGATCGATCTGTATTGATTCTTTCTCGGCTGAGGTGTGTGTGTC
TTTTGAGGAAATTGTAACTAGCTACTACCAGCT-------TTGTGAGTCTTCGTGTGCCAAATTGATGATACTAAATAAA
TAAAAATACAATGTTAATTATCTTGTAGTGAGATTAAG------------------------ACGTGTTTGAACTTTGAA
CAGAGTATGATCCGGACCATCAATCGAAGCATGAAAAATGCCTTTCGAGAAAACAAGCATGAAAAATGCCATCGTGCATG
CTACCTTTTTCCTTGAAGGAAAATCAACATGTTACATATCAAAGGAAAAATAAATGGATTACTGAAAATTTAAAATTCCT
TCTGCTTCATTTGTCATCACCTCACGCACACACACTCTCTCTCTTTTCTCTTTTCCT-----------------------
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-------------------------------------------------------TTTTTTTTTGAAACAATCACCTCAC
GCACTCAACACAGGAAGAAGACCACACTGCCACTCGTCATGATTCTGAAGAGTTTTATTTTTTTTCGCGAATACGCGCGG
AGGCATATCATTCCATTGGTAGATAGGAGAGAAAACAAGGGTTTGTGGTTACCCCAAAGGCTTGAACAACTAGGGCGCCT
TCAAGGTTACCAATGAGCATAGGAGAAGGGGTTGCTCAGCCTCACAAGAGGGGGATCAGATTACATGGATAATTCTATCT
AAACCCTTGGCACCAGCGCGTGCCCATCGCCTCACTTCGTCTTTGATGGCACTAGAGAGGTGGGAGTTGGACGGTTGCAG
GCCATCGAAGATGACTGCGTTTCTATGCTTCCAAATGTACCAAGCTGTGATGATCGCTAGAGAGGCGAAACCTTTGCACT
GCTGAGGCGGGGCCGCGGCGGTGCACTCCAGCCACCAGTCTAAGAAGGTGGCCTGGCCGTCCGGGATGGGTAGCGGTAGT
CGACACCAAGACAGGATCTTGTGCCAGGTGATCCTCGAGAAAACGCAATGAGCAAGGAGGTGTTCCAGGGATTCTTCTTC
CTGAGAGCATAAGCAGCATACGGGTGGGTGTTGGAGGCCACGCTTGGCCAAGCAGTCCGCCGTCCAACAACGGTTTTGAG
ACACGAGCCGGAGGAAGAACTTCACGTTGAGCGGGGCCCAGCTACGCCAAATGATCTTCCAGAATGGTGCCGTCTAGATC
CCTCGAACATGATATGGTAGCAGGAATGCGCCGAATATTGCCCATTGGCAGTCCAACGCCAGGATAGGGTATCCGGTTCA
GTGGAAAGAGAGACTCTCTGGATGTGCCTCCAGAGATCCACATACTCGATCATGGCGAGAGGACCAAGGCCTCCGGTAAT
GTTGGAGATCCAGGTACGCTGAGTAAGGGCGTCGCAGACCAGCCGGGCGTGACGGCGGCGGCGTGGGACTAGGGATACTA
GAGTGGGCGCAATCTCAGCGATGGAGCTCCCATAAAGCTAGTGGTCGAGCCAGAACTGACAGGACTGGCCATTGCCCAGC
CTCTAGACCGTAGAGGCACGGAACATCTATTGCGCCTCGGGCTCACAGGGGAGGGGGAGGTGTCGCCAGGGACGGCTAGC
ATCGGTGGCTTGAAGCCACATCGGGTGCAAAGAGCGATGCCGGTGCGCGGGAGATCGCGGACCCCAAGCCCCTCAAGCTC
GAGGAGCCAACAAACCTTGGCCCAACTGGCCAGACAACAACCGGCACGCGCGTCCTTGCAGCCCTGCCAAAGGAAGTCGC
GGACAATCCGGTTGATCTTCTTGAGGATAGTGGGGAGATCGCCATGGCCTGTAGGATGTGAGTCGGCATTCCCATGAGGA
CGTGACACACAAGGGTGAGCCGCTCACCGCGGTTGAGGAGCACGGCCTTCCATGTGGCTAGCTTGAGGAGTAGCTTGTCG
ACGAGTGGCATGAGTCCGAAGGAGGGGGTTTTGCAGACCGAGAGTGGCAAATCATCTGATGTTTCAACCTAAGATTCTGA
AACTAGTCGACCTTCCATGATTCTGAAGAGTTGCCTAGTTGGGTTGTGGCAGCTCAGCAACCCAAAAAATC---------
------------------------------------------------
>chr1A_12
-----------TTCGTTCTAGCTGTGGCGCATTTGCTATTTCTGCTTGCATCTCTACACTGACTG-----GATGGAGCTT
GCCTGTCAGGAATCGGGATTTGCTAGCTATGC------ATGCCGTGTGTATCCGATGCCTCTGCCCCTTTTAGGCGTTTG
CTACATGCAGAAAAAACGAA-GACACAGCAGCATCTAAAATCTAAAATAGAGTAAAGGTACTCATTGGACCATTCAGGTT
ATATAGTTAAGATTGAGCAATCGGACTCCCC---CAACATGCAACGAGGCCTCAATGATTAAGCTTGGTTTGGTCACAAA
TATAGTAGTACGTACTACTACAAATCTCAGTTCCGGAGATGAACAAGACTACCAGCTCAGACAGAGCTGAATTA------
-TCAAGGAGACGCAAGTCATACTTCAGTCTTGGCTG----TAATTAAATCGTCCAAACAACAACGCAAGC----------
-----------------------------AGTAGTATCTGCCAACTTTTT----TTAGTTCTAGTGTCAGGACATGACAG
TTCTTGCATGCACGACGCCGCCGTGGCATTACAAGATGCTGCAACAATCGCCACTTCATCTTCCTCGCAAAAATGGCGTG
CATACGCAGCTCTGGGGGAATCCATGGCTTGACATAGTA-------------CTGCATGCAGGTGAAAATATTGGAGTG-
-------CCGCAGATCTCGCAGCCTTTCCATTGCCAGCAATCATGGCAGAAAAGCCATGGCCGCG-CGCGACCCCACTCT
GTCCACCACATATTTCCACTACCAACCCTTTTCCTCCTCCGGCCGCACATGCACCGCCAATCGGTCGAGATTCCCCTTAA
TCCCTTCCCTCCAATGTTTAATCGTTCGTAAACCTTCTACTATTTAACACGCTCCACTCATCAGCTCTCCCCTTCCTTAG
CAGAGAAGTATAGCTAAGCCACTAAGCCAGTGTATAAAGAG--------TGTCAGTGCCAACAGAGC----GAGTACCAG
CAAGCGGCAATGGAGGTCCAGATGAGACGGGGCGGCGCGATGGGCCTGGTCCAGGCGGCGGCGGTGGTACTCTCCTACGT
GGTGCTGATCATGGCGTCGACGGCGGGGGTGCGCGCGCAGCTGCGGGTGGGGTTCTACGACAGCTCGTGCCCGGCGGCGG
AGATCATCGTGCAGCAGGAGGTGAGCAAGGCGGTGTCCGGCAACCCGGGCCTCGCGGCGGGCCTCCTCCGGCTCCACTTC
CACGACTGCTTCGTGGGCGGCTGCGAGGCGTCGGTGCTGGTCGACTCCAGCAAGGGCAACACGGCGGAGAAGGACGCCGG
GCCCAACACGAGCCTGCGCGGGTTCGAGGTGGTCGACCGGATCAAGGCGCGGGTGGAGCAGGCCTGCTTCGGCGTCGTCT
CCTGCGCCGACATCCTCGCCTTCGCTGCCAGGGACAGCGTCGCGCTGGTACGTGCCGTAAAGCAAACCCATGCATCATTA
GCCCCGGCTTTAATATAATCGGCTGCATTTTGTGGTTAATACAG---TATATAAACTGTCGCTTTAGGAAACCACACAGC
ACATGATCATATGGGTTTATCAGAATCTGAGTACGTAAAGCTTATGTGATCTGCCATCTGTGTCCCCTG-CCTTTCTCCT
TTTCTTTCTGTGCACC------ACATGACGCTACTAGCTGCACCTGCATGCGCACACGATGCC----GTTGTTTAGTCTG
TCAATC---GCTGATGGTGACTGCGTGTGCGCACGCAGACCGGCGGGAACGCGTACCAGGTGCCCGCGGGGCGGAGGGAC
GGGGGCGTGTCGCGGGCGCAGGACACGGGCGGCAACCTGCCGCCCCCGACCCCCAACGTGAACCAGCTCACCAAGATCTT
CGCCTCCAAGGGGCTCAGCCAGAAGGACCTGGTGACCCTGTCCGGCGCGCACACCATCGGCGGCTCGCACTGCAGCTCCT
TCAGCAGCCGCCTGCAGACGCCGTCCCCGACGGCGCAGGACCCGACCATGGACCCCGGCTACGTGGCGCAGCTGGCGCAG
CAGTGCGGCGCGTCCGCTGCGCCGGGGCCGCTGGTGCCCATGGACGCCGTCACCCCCAACTCCTTCGACGAAGGGTTCTA
CAAGGGCGTCATGTCCAACCGGGGCCTGCTCGCCTCCGACCAGGCGCTGCTCAGCGACGGGAACACCGCGGTGCAGGTGG
TCTCCTACGCCAACGACCCGGCCACCTTCCAGAGCGACTTCGCCGCTGCCATGGTCAAGATGGGCTACATCGGCGCGCTC
ACCGGCAGCAGCGGCAAGATCAGGGCCAACTGCAGAGTCGTATGATCGGTCCATCCATGGCGACATGCATCAAGGATCAT
CTTTCTTGTTTAGAAGAGTGGCGATGGATTCATTTGGATTGGACGTGGACCCGTGGTAGCACTTAGCGTTCTTATTTGAC
CATGTACGTA-GTACTGCGCCTATTCTTTTGCTCATCGATCGATATGTATTGATTCATTCTCGGCTGAGGTGTGTGTGTC
TTTTGAGGAAATTGTAACTAGCTACTACTAGCTTTGTGAATTGTGAGTGTTCGTGTGCCAAATTGATGATACTAAATAAA
TAAAAATACAATGTTAATTATCTTGTAGTGAGATTAAGGATTCATCTGTCAGCTCCATCCGGACGTGTTTCAACTTTGAA
CAGAGTATGGTCCGGACCATCAATCGAAGCATTAAAAATGTCTTTCAAAAAAACGAGCATGAAAAATGCCATCGTGCATG
CTACCTTTTTCCTTGAAGGAAAATCAACATGTTACATATCAAAGG-AAAATAAATGGATTACTGAAAATTTAAAATTC-T
TCCGCTTCATTTGTCATCACCTCACGCTCTCTCTCTCTCTCTCTCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCTCTCCTTTTTCCTTTTTTTTTGAAACAATCACCTCAC
GCACTCAACACAGGAAGAAGACCACACTGCCACTCGTCATGATTCTGAAGAGTT--------------------------
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--------------------------------GCCTAATTGGGTTGCGGCAGCTCAGCAACCCAATAAATCATCTG----
------------------------------------------------
>SNPs
-----------------------------------------------------------------SSSSS----------
--------------------------------SSSSSS------------------------------------------
----------S---------------------------------------------------------------------
-------------------------SS----SSS--------------------------------S-S---S-S---SS
--SS-SS-S-S--------------------S--S----S----S---------------------S-------------
--------------S-------------S-------S------S------------------SSSS-SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-S---SSSS--------------------SSS---
-----------------------------S---------S-S-----S-----------------SSS-S-------S--
-----S------S----------------S---SSS-SSSSSSSSSSSSSSS----SS--------------------SS
SSSSSSS---------------------------------------------------------------S---------
--------------------------------------------------------S-----------------------
----------------S-----S----S----------------------------------------------------
------------------------------------------------------------------S-------------
------------------------------------------S------------S--------S---------------
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--------------------------------------------------S-----------------------------
------------------------------------------------S-------------------------------
------------------------------------------------------------------S-------------
--------------------------------------------------------------------------S-----
-----------------------------------------S--------------------------------------
---------------------------------------------------------------SSSS-------------
-S------------------------------------------------------------------------------
--------------------------------S-----------------------------------------------
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-------------------------S-----S------------------------------------------------
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--------------------------------S------------------------------------------S----
------------------S----S---S--S-------------------------------------------------
----------S-------------------------------------S----------S--------------------
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-----------S-------------S-----S----------------------------------------S-------
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----------------------S--------------------------------S------------------------
---------------------------------S-S-----------SSSS-S--SSSS---------------------
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-----------------------------------------------------------S----------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_653
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-------------------------------------------------------------------------TGGCATG
CATACACAGCTCC-------------------------------------------------------------------
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>reverse_2540
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-----------------------------------------------------------TTCGGCTGAGGTGTGTGTG--
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