>input_sequence_55460
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-------------------AGAAACCACGAGCTCAAACTCAAATAAGCCATAGCATAGCAGGGAAGCTAGAGAGCCCAAA
GCGTATACTGCAAACACATGCTGCCGCTGGTGAACATGCAGGCTTCTCCGGAGAAAGAGGCCAGCAGGCAGCAGCAGATG
ATGACCAAGGTGTCCATCTCCATCCTGGTGATGGCGCTGCCGGTGCTCTACGTCTCCGTCCTCCGCGTGCCGCCGGCCAC
GCTCTTCCGGGACACCACCTTCTGGTTCCTCATGTCCAACTCCATCATCGTCGTCATCGCCGCCGACTCCGGCATGCTCT
TCTTCGGCTCCTCCGCTTCCGCTTCCCCGGGCGTCGACGACCGCCCATTCGTCGTCTCCAACTACAACGGCGACGCAGCG
GCGGTGCC---AATGGTTAGCGTCTCCAGCGACGAGCCGCTGCTGCCTGTGGCCGTCGTCGAGGACCAACCGTTGGTTGT
CGCGAGGGACATCCTCGTACATGGCGACACGGCCGTGGACAGCCATGCACACGCATTGGTTGTACGAGGCGAAGAAGATG
CTCGGCCGAAGATGGCCATGTCCGGCAAACCGTCCTATGCTTACCCCACCGGTGAGGGTGACGACGACGGCGTGGTGGTG
AAAGCGAGGCTGACGGCAAGCAGGAGCCTGGCGAGGGAGGAGAGGGCGGCGAGGAGGCGGCGGAGCAGGTCCCACTCGCA
CGCGCTCGTGCCCGACACTGACACGGTGGTGGTGCAGGACAAGAGCGTGGTCGTTGTGAGGGACGAGAAGCTCCGGCGCA
CGGCCACGGAGGGCCGGCGCCAGCCCACCGCCGCAGAGGAGGAGGAGAGCGAGTACTACGCGCGGCTCTCCGACGAGGAG
CTCAACCGGAGGGTGGAGGACTTCATCACCAGGTTCAACAGGGAGATCAGGCTGCAGGTCGAGAAGGAGGAGCTACAAGC
CTGATCTGATCGATGAAACCTCAGTCCAAAAACGCAAGAATTCCACAGGAACCAGTTCAGTTCAGTTCCTGACGGTCGAA
AAAAATTCCTGCCTTCCAAACGGGACCTCAGCCGAAGCTTCGTGCCGCCATGTCGCGACGCGTGTCGCGCCGCGACCATG
TACATGTTGTTCTTAGGAGGTTGGGGGTATTAGTTGTCTAGTAAGTTAGTAAGGAGCTTCCTCTTTTTTTGGGTAGA---
-TCTTCTGGTGCAGATGGAGTGAGAGTGAGTGAGAGGTACATCAGCGACAGCGAGATTGTAGCACTTCGATGAGGCTTTG
TAATATTTTGCATGCATGAGAACAGTGAATAAA-----------------------------------------------
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>chr5A_1_TraesCS5A01G031000
TCTTCTCCACATGGCATGTTTTTTGTTCCCTTCAACTAAGAGTCATCGGTTTAACACATGTTCCA----ATGTGCCCTAA
CCCCATGTGATAAATTGTGCAAGTTTTGTTGATCCGTACACATGTTCCGATGGAAGCTAGCATATGGGCGTACTATA---
TATATGATACACTCTCAAAAGG-GGTTGATCATGTGGTGTGTTGAATTTAAGCAGAGTACATAAAGCAAGCCATTTCAAA
AAAACAAAAACACGGAAGATTCATTAACATGTTTTTT---CAAAAGCTTACTCAATAATGTCATACTGCGAAAAGAAACA
AACAACAAATTGACAAGCAATTTTCACAAGCATGCATGGTTCAATAGGCACAACAAGGCAGTGGTTTAT-ACGGATG-GC
ACCATGGTTTTGATCCTATCTTGGTATA----GCTAGGTTGGGTGTGTGGTGTAGATATAAGAAAGTATGCTCTTATCTT
TGCTTTTCCAAAACGCACAGCCATACATGCATGGTTTTCTCACCATATCATTGGTTGTCCTGCACTGCCGGCCAACATGT
GCCACAATGCCCATTTGCTCTCATCTAAACAGTGTCCCCCTCCCCCTCTAGCAAATTGCACCCCAAAATATCAGACTCAA
AT---GCAGCACCGTCATCCAGCC----CCTAGCTTGCCCTCTCTAATCAGGCATGCAAAACCACCATACCTTTCTTTAC
CCCATCTCCATCCATCCAGCCAC--------ACACATGATTATTGGAGAGCTACTACTAGTAGTACTA---GTGATGCTC
ACACTCCCCCTCCCATGCATGCACTCCCTCTCTCTCTCTAGAC----ACACACCAATCATTCTCACTCACATACAACCAC
AAACCTACACCTACACAACAACAATTTTTTTTAGAGACAACACAACAATTAGCATGCATTTACTCTCTCTCTCTCTCTCT
C--------------------TCTCTACTTCTCTCCCTCTCTCTCTCCCTCTCTACCTCTCCCCTATAAAAGGACATCTC
ATTCACACCACAAGTCCACAGAAACCACGAGCTCAAACTCAAATAAGCCATAGCATAGCAGGGAAGCTAGAGAGCCCAAA
GCGTATACTGCAAACACATGCTGCCGCTGGTGAACATGCAGGCTTCTCCGGAGAAAGAGGCCAGCAGGCAGCAGCAGATG
ATGACCAAGGTGTCCATCTCCATCCTGGTGATGGCGCTGCCGGTGCTCTACGTCTCCGTCCTCCGCGTGCCGCCGGCCAC
GCTCTTCCGGGACACCACCTTCTGGTTCCTCATGTCCAACTCCATCATCGTCGTCATCGCCGCCGACTCCGGCATGCTCT
TCTTCGGCTCCTCCGCTTCCGCTTCCCCGGGCGTCGACGACCGCCCATTCGTCGTCTCCAACTACAACGGCGACGCAGCG
GCGGTGCC---AATGGTTAGCGTCTCCAGCGACGAGCCGCTGCTGCCTGTGGCCGTCGTCGAGGACCAACCGTTGGTTGT
CGCGAGGGACATCCTCGTACATGGCGACACGGCCGTGGACAGCCATGCACACGCATTGGTTGTACGAGGCGAAGAAGATG
CTCGGCCGAAGATGGCCATGTCCGGCAAACCGTCCTATGCTTACCCCACCGGTGAGGGTGACGACGACGGCGTGGTGGTG
AAAGCGAGGCTGACGGCAAGCAGGAGCCTGGCGAGGGAGGAGAGGGCGGCGAGGAGGCGGCGGAGCAGGTCCCACTCGCA
CGCGCTCGTGCCCGACACTGACACGGTGGTGGTGCAGGACAAGAGCGTGGTCGTTGTGAGGGACGAGAAGCTCCGGCGCA
CGGCCACGGAGGGCCGGCGCCAGCCCACCGCCGCAGAGGAGGAGGAGAGCGAGTACTACGCGCGGCTCTCCGACGAGGAG
CTCAACCGGAGGGTGGAGGACTTCATCACCAGGTTCAACAGGGAGATCAGGCTGCAGGTCGAGAAGGAGGAGCTACAAGC
CTGATCTGATCGATGAAACCTCAGTCCAAAAACGCAAGAATTCCACAGGAACCAGTTCAGTTCAGTTCCTGACGGTCGAA
AAAAATTCCTGCCTTCCAAACGGGACCTCAGCCGAAGCTTCGTGCCGCCATGTCGCGACGCGTGTCGCGCCGCGACCATG
TACATGTTGTTCTTAGGAGGTTGGGGGTATTAGTTGTCTAGTAAGTTAGTAAGGAGCTTCCTCTTTTTTTGGGTAGA---
-TCTTCTGGTGCAGATGGAGTGAGAGTGAGTGAGAGGTACATCAGCGACAGCGAGATTGTAGCACTTCGATGAGGCTTTG
TAATATTTTGCATGCATGAGAACAGTGAATAAACTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGGGAGATGGATTA
GTAAT---ATATATCTGTTGTGCCATTATCTAAAAGATTATGCTATATCTTGTTTACACTAGCTTCCATTGACAAACAAG
CTGTACTCTGTCTGTACTTCCTGCAGGAAGATCTTGTCCTGTGGAGAATGGTCAGAAAGTGGGCCCAGCTCAAGAAAAAA
CCATATTTATACACAGACACCCAAATCTTGGTCATGTGCAGTAAAAATGCTAAAATGGAAACTTTAAGTCAGTTTGAGAA
TTTTTAAACTGTCTAGTTGTAAGTTGGATAAAAACTTTAA-----------GTCTGCTCACTTGATCTCCTTTGGCGAAT
-------------CAACTGAAGATCCTCTTCTACAATCAACTGAGGGATCTTGTTTTTGCAATGGACTGTCTCTGTGACA
AGATCTTGTCCTGGAGATCTACACAAGTACACAATCGTTTTTGATTAATGGCTCCCGAGGAGAATCTAAATCTGTTATTT
TGTAGTGTATCATTTATTGGTTAATCTGCCTTGACATGAGGATCCAGATGCAGGGGAGGAGCAGAGCAGCTGCATAAAAA
T--TAAA--TAGGAGACAGTGAAACAGCTCCTGTCATGTATTAGTACGGCTTGCCTGCCTAATTGCACTATGAGTAGTAA
GTAGTACTAGTAGTAACTCATGACATAAGTAGGGTAGGTTTAGATCT----------------------------TGAGG
TACTGTGAACAACAGTCAGTTGATGGGCATCAGGCTCTTAGATATTTCTTGGGATGAACAGGGTTAAAAATATTTGTTAA
TTTGTTCACTGTTA-TTTGGTGGTGTTAACTGTTAAGTGAGCATGAGTTCTTTCTTTCCCATCTTAACACAAGG-AAAGT
CCTCTCTGCAAGCAAATTAAGCAAATGATTAAAGTAATTAACCAATCACTTACTACTTAGCTGGCTTGCTCCAAGGTTAA
TCAAGCTCTATTTTATCATTTTGGTAAGTTGATGATTGATGGCTAGCAAGAAAA
>chr5D_1
TCTTCTCCTCATGGCATGTTTTTTGATCCCTTCAAGTAAGA---ATAGGTTTAAATTGCACAAGTTCTGGTGTGCCCTAA
CCCCATGTGATAAATTGTACAAGTTTT--TGAACCGT------------------GCTTGCATATGGTTGTACTATATAG
TATATGATACACTCTCAAAAGAGGCT--ATCATGTGGTGTGTTATATTTAT--------CATAAAGCAAGCCATTTTCG-
AAAAAGAAAACATGGAAGATTGATGAACATGTTTTTTTTTCGAAAGCTCACTCAATAATGTTATACGGCG-AAAGAAACA
AATAATAAATTGACAATCAATTTTCACAAGCATGCATGGTTCAATAGCCACAACAAGGCAGTGGTTTAT-ACGGATGAGC
ACCATGGTTTTGATCCTATCTTGGTATATATAGCTAGGTAGGGTGTGCGGTGTAGATATAAGAAAGTATGCTCTTAACTT
TGCTTTTCCAAAACGCACAGCCATACGTGCATGGTTTTCTCACCATATCATTGGTTGTCCTGCACTGCCGGCCAACATGT
GCTACAATGCCCATTTGCTCTCATCTA--CAGTGTCCCCCTCCCTCTCTAGCAAATTGCACCCCAAAATATCAAGATCAA
AT---GCAGCACCATCATCCAGCCAGCACCTAGCTTGCCCTCTCTAATCAGGCATGCAAAACCACCATGCCTTTCTTTAC
CCCATCTCCATCCATCCAGCCAG--------ACACATGATTATTGGAGAGCTACTACTAGTAGTACTACTAGTGATGCTC
ACACTCCCCCTCCCATGCATGCACTCCCTCT----------CTCTAGACACACCAATCATTCTCACTCACATACAACCAC
AAACCTACACCTACACAACAACAATATTTTTTAGAGACAACACAACAATTAGCATGCATTTACTCTCTCTCTCTTTCTCT
C--------------------TCTCTCTC-------------------------------CCCCTATAAAAGGACATCTC
ATTCACACCACAAGTCCACAGAAACCACGAGCTCAAACTCAAATAAGCCATAGCATAGCAAGGAAGCTAGAAAGCCCAAA
GCGTACACTGCAAACACATGCTGCCGCTGGTGAACATGCAGGCTCCGCCGGAGAGAGAGATCAGCAGGCAGCAGCAGATG
ATGACCAAGGTGTCCATCACCATCCTGGTGATGGCGCTGCCGGTGCTCTACGTCTCCGTCCTCCGCGTGCCGCCGGCCAC
GCTCTTCCGGGACACCACCTTCTGGTTCCTCATGTCCAACTCCATCATCGTCGTCATCGCCGCCGACTCCGGCATGCTCT
TCTTCGGCTCCTCCGCTTCCGCTTCCCCGGGCGTCGACGACCGCCCCTTCGTCGTCTCCAACTACAACGGCGACGCAGCA
GCGGTGCC---AATGGTTAGCGTCTCCAGTGACGAGCCGCTGCTGCCTGTGGTCGTCGTCGAGGACCAACCGTTGGTTGT
CGCGAGGGACATCCTCCTCCATGGCGACACGGCCGTGGACAGCCATGCACACGCATTGGTTGTACGAGGCGAAGAAGATG
TTCGGCCGAAGATGGCCATGTCCGGCACGCCGTCCTACGCTTACCCCACCCGTGAGGGTGACGACGACGGTGTGATGGTG
AAAGCGAGGCTGACGGCGAGCAGGAGCCTGGCGAGGGAGGAGAGGGCGGCGAGGAGGCGGCGGAGCAGGTCCCACTCGCA
CGCGCTCGTGGCCGCCGTGCCCGACCCCGTGGTGGAGGACAAGAGCGTGGTCGTCGTGAGGGACGAGAAGCTCCGGCGCA
CGGCCACGGAGGGCCGGCGCCAGCCCACCGCCGCAGAGGAGGAGGAGAGCGAGTACTACGCGCGGCTCTCCGACGAGGAG
CTCAACCGGAGGGTGGAGGACTTCATCACCAGGTTCAACAGGGAGATCAGGCTGCAGGTCGAGAAGGAGGAGCTACAAGC
CTGATCC-----ATGAAACCTCAGTCCAAAACA-CAAGAATTCCACAGGAAAGGAACCAGTTCAGTTCCTGACGGTCGAA
AAAAATTCCTGCCTTCCAAACGGGACCTCAGCCGAAGCTTCGTGCCGCCATGTCGCGACGCGTGTCGCGCCGCGACCATG
TACATGTTGTTCTTAGGAGGTTGGGGGTATTAGCTGGCTAGTAACTTAGTAAGGAGCTTCCTCTTTTTTTGGGTAGATCG
ATCTTCTGGTGGAGATGGAGTGAGAGTGAG----AGGTACATCAGCGACAGAGAGATTGTAGCACTTCGATGAGGCTTTG
---TATTTTGCATGCATGAGAACAGTGAATAAACTAAGAGAGAGG----------------GAGCAAGGGAGATGGATTA
GTAAT---ATATATGTGCTGTGTCATTATCTAAAAGATTATGCTATATCTTGTTTACACTAGCTTCCATTGACAAACAAG
CTGTACTCTGTCTGTACTTCCTGCAGGAAGATCTTGTCCTGTGGAGAAATGGT--AAAGTGGGCCCACCTCAAGAGCAAA
CCATATTTATACACAGATACCCAAATCTTGGTCATGTGCAGTAAAAATGCTAAAATGGAAACTTGAAGTGAGTTTCAGAG
TTTGTCATTTGTCTAGTTGTAAGTTGGATAAAATTCAATTCCATATCTGTGGTCTGCCCACTTGGTC-------------
TCCTTTGGCAAATCAGCTGAAGATCCTCTTTTGCAATCAACCGAGGGATCTTG-TTTTGCAATGGACTGTCTCTGTGACA
AGATCTTGTCCTGGAGATCTACACAAGTACACAATCGTTTTTGATTAATGGCTCCCGAGGAGAATCTAAATCTGTTATTT
TGTAGCGTATCATTTATTGTTTCATCTGCCTTGACATGAGGATCCAGATGCAGGGGAGGAGCAGAGCAGCTGCATAAAAA
TAAATACAGTAGGAGACAGTGAAACAGCTCCTGTCATGTATTAGTACGGCTTGCCTGCCTAATTGCACTATGAGTAGTAA
GTA--AGTAGTGGTAACTCGTGACATAAGTATGGTAGATTTAGATCTCAGTCCCTGAAAGAGGGGCCAGTTTGCCTGAGG
CACTGTGAACAACAGTCACTTGATGGGCATCAGGCTCTTAGATATTTCTTGGGATGAACAGGGTTAAAA-TATTTGTTAA
TATGTTCACTGTTA-TTTGGTGGTGTTAACTGTTAAGTGAGCATGAGTTGTTTCTTTCCCATCTTAACACAAGGAAAAGT
CTTCTCTGCAAGCAAATTAAGCAAATGAGTAAAGTAGCTAACCAATCACTTACTACTTAGCTGGCTTGCTCCAAGGTTAA
TCAAGCTCTATTTTATCATTTTGGTAAGCTGATGATTGATGGCTAGCAAGAAAA
>chr5B_1
TCTTCTCCTCGTGGCATG-TTTTTGTTCCCTTCAACTAAGAGTCATCGGTTTAAATTGAGCAAGTTCTGATGTGCCCTAA
CCCCATGTGATAAATTGCACAAGTTATGTTGAATCAT------------------GCTTGTATATGGGCGTACAATA---
TATATGATACACTTTCAAAAAGAGGTTGATCATGTGGTGTGTTATATTTAAGCAGAGTACATAAAGCAAGCCATTTCAAA
AAAACGAAAACACGGAAGATTCATGAACATGTTTTTT---CGAAAGCTCACTCAATAATGGCATACTGTGAAAAGAAACA
AATAACAAATTGACAAGCAATTTTCACAAGCATGCATGGTTCAATAGCCACAACAAGGCAGTGGTTTTACACGGATGAGC
ACCATGGTTTTGATCCTACCTTGGTATATGTAGCTAGGTAGGGTGTGTGGTGTAGATATAAGAAAGTATGCTCTTAACTT
TGCTTTTCCGAAACGCACAGCCATACATGCATGGTTTTCTCACCATATCATTGGTTGTCCTGCACTGCCGGCCAACATGT
GCCACAATGCCCATTTGCTCTCATCTAAACAGTGTCCCCCTCCCCCTCTAGCAAATTGCACCCCAAAATATCAAAACCAA
ATGCAGCAGCACCATCATCCAGCCAGCACCTAGCTTGCCCTCTCTAATCAGGCATGCAAAACCACCATACCTTTCTTTAC
CCCATCTCCATCCATCCAGCCACTGAGCCACACACATGATTATTGGAGAGCTACTACTAGTACTACTA---GTGATGCTC
ACACTCCCCCTCCCATGCATGCACTCCCTCTCTCTCTCTCTCTCTAGACACACCAATCATTCTCACTCACATACAACCAC
AAACCTACACCTACACAACAACAATATTTTTTAGAGACAACACAACAATTAGCATGCATTTACTCTCTCTCTCTCTCTCT
CTCTACCTCTCTCTCTATACCTCTCTCTC-------------------------------CCCCTATAAAAGGACATCTC
ATTCACACCACAAGTGCACAGAAACCACGAGCTCAAACGCAAATAAGCCATAGCATAGCAGGGAAGCTAGAAAGCCCAAA
GCGTACACTGCAAACACATGCTGCCGCTGGTGAACATGCAGGCTCCGCCGGGGAGAGAGATCAGCAGGCAGCAGCAGATG
ATGACCAAGGTGTCCATCTCCATCCTGGTGATGGCGCTGCCGGTGCTCTACGTCTCCGTCCTCCGCGTGCCGCCGGCCAC
GCTCTTCCGGGACACCACCTTCTGGTTCCTCATGTCCAACTCCATCATCGTCGTCATCGCCGCCGACTCCGGCATGCTCT
TCTTCGGCTCCTCCCCGTCCACCTCCCCCTGCGTCGACGACCGCCCCTTCGTCGTCTCCAACTACAACGGCGACGCAGCA
GCGGTGCCGCCAATGGTTAGCGTCTCCAGCGACGAGCCGCTGCTGCCTGTGGTGGTCGTCGAGGACCAACCGTTGGTTGT
CGCGAGGGACGTCCTCCTCCATGGCGACACGGCCGTGGACAGCCATGCACACGCATTGGTTGTACGAGGCGAAGAAGGTG
TTCGGCCGAAGATGGCCACGTCCGGCACACCGTCCCATGCTTACGCCACCGGTGAGGGTGACGACGACGGCGTGACGGTG
AAAGCCAGGCTGACGGCGAGCAGGAGCCTGGCGAGGGAGGAGAGGGCGGCGAGGAGGCGGCGGAGCAGGTCCCACTCGCA
CGCGCTCGTGCCCGACAC------GGTGGTGGTGCAGGACAAGAGCGTGGTCGTCGTGAGGGACGAGAAGCTCCGGCGCA
CGGCCACGGAGGGCCGGCGCCCGCCCACCGCCGCAGAGGAGGAGGAGAGCGAGTACTACGCGCGGCTCTCCGACGAGGAG
CTCAACCGGAGGGTGGAGGACTTCATCACCAGGTTCAACAGGGAGATCAGGCTGCAGGTCGAGAAGGAGGAGCTGCAAGC
CTGATCTGATCGATGAAACCTCAGCCCAAAAACGCAAGAATTCCACAGGAGCCAGATCAGTTCA-----TGACGGTCTAC
AAAAATTCCTGCCTTCCAAACGGGACCTCAGCCGAAGCTTCGTGCCGCCATGCCGCGACGCGTGTCGCGGCGCGACCATG
TACATGTTGTTCTTAGGAGGTTGGGGGCATTAGCTGGCTAGTAACTTAGTAAGGAGCTTCCTCTTTTCTGGGTA-----G
ATCTTCTGGTGCAGATGGAGTGAGAGTGAGTGAGAGGTACATCAGCGACAGAGAGATTGTAGCACTTCGATGAGGCTTTG
---TATTTTGCATGCATGAGAACAGTGAATAAACTAAGAGAGAGG----------------GAGCAAGGGGGATGGATTA
GCAATACTATATATGTGCTGTGTCATTATCTAAAAGATTATGCTGTATCTTGTTTACACTAGCTTCCATTGACAAACAAG
CTGTACTCTGTCTGTACTTCCTGCAGGAAGATCTTGCCCTGTGGAGAATGGTCAGAAAGTGGGCCCACATCAAGAGAAAA
CCCTATTTATACGCAGACACCCAAATCTTGGCCATGTGCAGTAAAAATGCTAAAATGGAAACTTTAAGTTAGTTTCAGAG
TTTGTAAATTGTCTAGTTGTAAGTTGGATAAAATTCAATTCCATATCTGTGGTCTGCTCACTTGATCTCCTTTGGTGAAT
TCCTTTGGCAAATCAACTGAAGATCCTCTTTTGCAATCAACTGAGGGATCTTG-TTCTGCAATGGACTCTCTCTGTGACA
AGATCTTGTCCTGGAGATCTACACAAGTACACAATCGTTTTTGATTAATGGCCCCCGAGGAGAATCTAAATCTGTTATTT
TGTAGTGTATCATTTATTGTTTCATCTGCCTTGACATGAGGATCCAGATGCAGGGGAGTAGCACAGCAGCTGCATAAAAA
TAATAAA--TAGGAGACAGTGAAACAGCTCCTGTCATGTATTAGTACGGCTTGCCTGCCTAATTGCACTATGAGTCAGTA
GTA--ACTAGTAGTAACTCATGACATAAGTAGGGTAGGTTTAGATCTCAGTCCCTGAAAGAGGGGCCAGTTTGCCTGAGG
CACTGTGAACAACAGTCACTTGATGTGCATCAGGCTCTTAGATATTTCTTGGGATGAACAGGGTGAAAA-AATTTGTTAA
TTTGTTCACTGTGTTTTTGGTGGTGCCAACTGTTAAGTGAGCATGAGTTCTTTCTTTCCCATCTTAACACAAGGAAAAGT
CTTCTCTGCAAGCAAATTAAGCAAATGGGTAAAGTAATTAACCAATCGCTTACTACTTAGCTGGCTTGCTCCAAGGTTAA
TCAAGCTCTATTTTATCATTTTGTTGAGCTGATGATTGATGGCTAGCAAGAAAA
>SNPs
--------S---------------------------------------------SSSSS-SSSSS---------------
------------------S-------------S----SSSSSSSSSSSSSSSSSS---S---------------------
-------------------------------------------SS-----------------------------------
-----S------------------S----------------S------S-------------------------------
--S--------------------------------------------S--------------------------------
---------------------------------------S------------------------------------S---
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S-S----
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------SSSS-------------------------------------
-------------------------S------------------------------------------------------
--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
-----------------------------------------------------------------------S--------
-----S--------------------------------------S-S-------S----SS-------------------
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----------------------------------------------S--------------------------------S
----------------------------------------------------S---------------------------
----------------S-S-------------------------------------------------------------
S--------------------------S----------------------------------------------S-----
-----------------S--------------------------------------------------------------
------------------SSS-SS------------------------------S-------------------------
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-------------------------------------------------------S------------------------
--------------------------------------------------------------------------------
---------------------------------S--S-------S-----------------------------------
---------------------------------------------------S----------------------------
SSS-----------------------------------------SSSSSSSSSSSSSSSSS-------------------
--------------S--S----S---------------------------------------------------------
-------------------------------------------------------------------S-------S----
---------------------------------------------------------------------S-----S---S
---S----S------------------------SSSSSSS-----------------------------------S----
------------------------------S-S--------------------S--------------------------
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-------------------S--S---------------------------------------------------------
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---SS---------------------------------------------------------------------------
S-----------------S--------------------------------------------------S----------
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-S--------------------------S---------------------------------------------------
----------------------------S-------------------------
>forward_654
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--------------------------------------------------------------------------CAGACT
CAAATGCAGCACCG------------------------------------------------------------------
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>reverse_1628
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---------------------------AACCGTCCTATGCTTACCCC---------------------------------
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>forward_1167
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---------------------------TGGTGAACATGCAGGCTTCT---------------------------------
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>reverse_3139
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------------------GTTGATGGGCATCAGGCTCT------------------------------------------
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