>input_sequence_55457
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-------------------------------------------------------------------------ATGGCCA
TGGAGGACGACGAGAACGCGACCCAGAAGAGCCGCTTCTTCCGCGACGCGCGCGTGGAGGCCATGCAGCGGCGCGTGGAC
GAGGTGCACGCGGAGGCCGAGGACCCCTGCACCATCTTCCGCCTCCCCGCGGCCGTGCGCGAGCGCCACCCCGACCTGTA
CGAGCCCAAGGTCGTGTCCGTGGGGCCCTACTACCACGGCCGCGCCGGGCTCGCCGCCGCGCAGCAGCACAAGTGGCGCC
TCCTGCGCGACTTCCTGTCGCGGGCAAACGGGAAGGGG------------------CTGGGCGCCTACTTGCGCTGCGCG
AGCGCGCTCGAGGCCGACGCGCGGCGGTGCTACGCGGAGGGGTTCGACGCCGTGGGAGCCGACGACTTCGCGGAGATGCT
GGTGCTCGACGGCTGCTTCCTGCTCGAGTTCTTCCTGCGGAAGGGCGAGGGCCAGCTCGCCGCGCCCGGGGGCGCCAAGT
GGGCGTGGCAGCACATGTACCACGACGTCCTCCTGCTCGAGAACCAGATCCCCTTCTTCGTCGTCGAGAAGCTGCACGCC
ATCGCCTTCCCCGGCGAGGACGGCGGGCCCGACAGCGAGGGGCTCCTCGACATCTTCTGCAAGGCCCTGGCCGGCGACCT
GCCGTCGAGCCGCGCCATCCGGCCGCGGAGCGGCAAGACGATACACCACCTCCTGCACCTGCACTACGAGTGCAACGTCC
GCAGCGCGTCCGCGGACGCCAGCGACGCCAAGGGGCGCAGCAACGGCAAGGCCGACGCCAACGGCGCCTCGTCGCTGGCC
GTGTGGAAGCAGTCGCCGGTCCCGTCCCCGCGCTCCAGCGACGGCGCCGTGAAGGGCCGGCTGACGTCGATGGTCCCGCA
GGCGGCCAAGATGGAGGAGGCCGGCGTGACGTTCAAGAGGAAGGCGACCCCGCGCGACATGTTCGACGTGAGCTTCCGGT
ACGGCGTGCTGCACATGCCGGCGTTCGTGGTGGACGAGGCCGCCAAGGTGCTGCTGGCCAACCTGGTGGCGTTCGAGCAG
GGCGGCGGCCGCGCCGCCAGGCAGCTGGACGGGGGCAACCTGGTGACGGGGTTCGTGGCGCTGGTGGGGTCCCTGGTGAA
CACGACGAGGGACGTGGAGGTGCTCCGGCGGTGTGGCGTCATGCACTGCAT--------GCTCACCCACGACGAGGCCGT
CAGGTACTTCAGCCACGTGGTGCAATACACGACCATGGACTACGACCGCCACCTGCTCGCCTGCTTGTTCCGAGACATCC
GAGAGCACTGCCAGTGGAG--CCGATGA----------------------------------------------------
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-----------------
>chr4A_1_TraesCS4A01G123000
TGGCGGCATTGTACATGGGGTCGTGCGTGTGCGGTATGCGATGTGAGCTTGTGGCATACTCCAAGGTGCGGAGCATGATC
TACCAAACGGCACTCCTTGACGTGCGACCCCGTCGTGCCTGTACGTCAGCCGTCACAACCAATGTACTGTAATCACCATT
GGAAAATATGCATGGCAATGCCAGGCTGCTTAGTGCTTACGACGTCGACTTCATCTCCGCGGCCAAGTAAAAAAGCTTTT
TTTTTCTTTCATTCGCAAAAAAAAAACTTTTTTCTTACCGTTCTTGTTTGCCACGCCTATGACCCCGTCCACGCTTGAAG
GCCTGAACTCGAACCGGTCATTTTTGTCATCCGTCACCGATTTCATAAACTGATTTTGTACGTCCCAATCCTGTAGAGTC
CAGGTGTATGCTAAACATGAAATATAAGAACCACTGGCCAAAGTTAAA-TTGACATCACAATCATCACTGCCGTACCGCC
ATAAACACGCCGAAGCTGCGTAAGCTCGTATTCTAATT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TATCAGCGATGGCGACCGGCTAAAAATAAGCTTTCCCGGTGTGTGTGTG--------GCTGTAAAGCATCAGTAAT
TATTTTTT-GTCCTCCTTTCCTCCATTTTGATTTTTGAGATCCCGAATATGCGAAAATTGGGTAGTACTTTCATTTTGCC
CTGCC------------------------------------------GAATCAAAGTCTGCGCGAGAGTAGCGTAGACTA
GGAGTGGAGAGATGCAACTTTTCCAAGCACATTTCGTCA-AAGTACGCTGCGTGGGTACATGGAAGTTTTAGACACGGCG
ATAAGAAAAAGCTACTAACATACACGACGCAACGATCCAGGTGAG-----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GTGAGGTACAGCTCCCGCGAC
GCCCCATCATTTTTGTTGGCGAAGCGCGTCCCATCCTCGGATCGTGGCCGCGGCGTTCAATTTCGACGCGCGCTTCCCTC
TTTAAAGCCCCTTGCCGGCGCCTCGCCGCGCAGTGTGTTGTGTCCTCCCCAAGTGCGCGCGTTCGCTCGATCCATGGCCA
TGGAGGACGACGAGAACGCGACCCAGAAGAGCCGCTTCTTCCGCGACGCGCGCGTGGAGGCCATGCAGCGGCGCGTGGAC
GAGGTGCACGCGGAGGCCGAGGACCCCTGCACCATCTTCCGCCTCCCCGCGGCCGTGCGCGAGCGCCACCCCGACCTGTA
CGAGCCCAAGGTCGTGTCCGTGGGGCCCTACTACCACGGCCGCGCCGGGCTCGCCGCCGCGCAGCAGCACAAGTGGCGCC
TCCTGCGCGACTTCCTGTCGCGGGCAAACGGGAAGGGG------------------CTGGGCGCCTACTTGCGCTGCGCG
AGCGCGCTCGAGGCCGACGCGCGGCGGTGCTACGCGGAGGGGTTCGACGCCGTGGGAGCCGACGACTTCGCGGAGATGCT
GGTGCTCGACGGCTGCTTCCTGCTCGAGTTCTTCCTGCGGAAGGGCGAGGGCCAGCTCGCCGCGCCCGGGGGCGCCAAGT
GGGCGTGGCAGCACATGTACCACGACGTCCTCCTGCTCGAGAACCAGATCCCCTTCTTCGTCGTCGAGAAGCTGCACGCC
ATCGCCTTCCCCGGCGAGGACGGCGGGCCCGACAGCGAGGGGCTCCTCGACATCTTCTGCAAGGCCCTGGCCGGCGACCT
GCCGTCGAGCCGCGCCATCCGGCCGCGGAGCGGCAAGACGATACACCACCTCCTGCACCTGCACTACGAGTGCAACGTCC
GCAGCGCGTCCGCGGACGCCAGCGACGCCAAGGGGCGCAGCAACGGCAAGGCCGACGCCAACGGCGCCTCGTCGCTGGCC
GTGTGGAAGCAGTCGCCGGTCCCGTCCCCGCGCTCCAGCGACGGCGCCGTGAAGGGCCGGCTGACGTCGATGGTCCCGCA
GGCGGCCAAGATGGAGGAGGCCGGCGTGACGTTCAAGAGGAAGGCGACCCCGCGCGACATGTTCGACGTGAGCTTCCGGT
ACGGCGTGCTGCACATGCCGGCGTTCGTGGTGGACGAGGCCGCCAAGGTGCTGCTGGCCAACCTGGTGGCGTTCGAGCAG
GGCGGCGGCCGCGCCGCCAGGCAGCTGGACGGGGGCAACCTGGTGACGGGGTTCGTGGCGCTGGTGGGGTCCCTGGTGAA
CACGACGAGGGACGTGGAGGTGCTCCGGCGGTGTGGCGTCATGCACTGCAT--------GCTCACCCACGACGAGGCCGT
CAGGTACTTCAGCCACGTGGTGCAATACACGACCATGGACTACGACCGCCACCTGCTCGCCTGCTTGTTCCGAGACATCC
GAGAGCACTGCCAGTGGAG--CCGATGACCGAT-CGTGCGCACGTAGCTGATTCTTTGCTCGACTATTATTAAGTCGATC
TCCACCACTTTGTTTCTG--CTCTACATGCCAATACGTTTCCTTTTTTCTGTTCTACTCTCTTTTT--TTCCAATGGTTA
CTCTACTCTCTCTTGTCACAAAATATAAAGATGTACTCCCTCCATCGCAAGGTGTA-TTATTTTCGGCACAGTGATCAAG
ACACATAATTATGCATAATTTAGGATGA-----------GCTAAATCATTGATTAGTGGCAAGTAAATCATTTAGTCTAG
AAAA-TGAAAAGATACACGCAATCAGAAGAGAGACACTTTTTTTTCT---TCTCTCCAAGAAAAGATATATGCAATCGCG
AGAGAGATACTTTCCTATTTCTAGAGGGTTGAAAACAGAATTTAAAAAAAATAGATAAAATGCACCTTACATTATAGAAT
CTTATAAAAAAAAACAAATGCATCTTAG--AAAGGAACGGAGAGAGTACTACACTATTGCGGTATGTTGCTTTGTTAAGA
TATGACCGGACAATTACTCCACTGGATGGGTGTGATTAATAAGCTCTTTTAGGACACTTCTAAATTGATCAATACAGGCC
ATTTATTTTTGTTAATCCAGTGACTAATATTAGGAGTATTAGGTAAGATGCTACTAAAGATTTTGTAGTGCTGAGAGTAA
CTCCTACGGATCCCGTATCCATAAAATAACTACCCTTTAGGAAAAGTTTGGGCAAAAAACGTCGCCAACAAATCCCGTAA
ACATGGAATAAATTTGCAGGATCTTGTAAACTTGACCTCAACTTTCCTTTGATACACGCGAAGTTTTGCTTCCCATAAAC
TTTTGGCAGCAAGGTAACCGCCTAAAACTTCACGCCGCGCCGCCGGTAAGCCGGTGCGCCATCGCGAAAGCCACCACGCC
ACTGGAAAGCCGACGCGTAGATGTGCCCCACCAGCCTGCCGGAATGCCGTCATGCA----TGTCACTGACTAGTGGG--C
CCTAGACCATTATCTAG
>chr4D_1
TGGCGGCATCGAACATGGGGTCGTGCGTGTGCAGTATGGGAC--GAGCTTGTGGCATACTCCGAGGTGCGGAGCATGATC
TACCAAACGGCACTCCTTGACGTGCGACCCCGTCGTGCGTGTACGTCAGCCGTCACAACCAATGTACT-TAATCACCATT
GGAAAATATGCATGGAAATGCCAGGC-------TGCTTACGACGTCGACTTCATCTCCGCGGCCAAGTAAAAAGC---TT
TTTTTCTTTCATTCGCAAAAAAAAAACTTTTTTCTTACCGTTCTTGTTTGCCACGCCTATGACCCCGTCCACGCTTGAAG
GCCTGAACTCGAACCAGTCATTTTTGTCATCCGTCACCGATTTCACAAACTGATTTTGTACATCCCAATCCTGTAGAGTC
CAGGTGTATGGTAAACATGAAATATAAGAACCACTGACCAAAGTAAAA-TTGACATCACAATCATCACTGCCGTACCGCC
ATAAACACGCCGAAGCTGCGTAAGCTCGTATTCTAATT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TATCAGCGATGGTGACCGGTTAAAAATAAGCTTTCCCGGTGTGTGTGTGTGTGTTTAGCTGTAAAGCATCAGTAAT
TATTTTTTTGTCCTCCTTTGCTCCATTTTGGTTTTTGAGATCCCGAATATACAAAAATTGGGTAGTACTTTAATTTTGCC
CT------------TTTTTTTGAGGATTAACATAAATTTGCCCTGTCCAATCAAAGTCTACGCGAGACTAGCGTAGACTA
GGAGTGGAGAGATGCAACTTTTCCAAACACATTTCGTCA-A-GTACGCTGCGTGGGTACATGGAAGTTTTAGACACGGCG
ATAAGAAAAAGCTACTAAGATACACGATGTAACAATCCAGGTGAGT----------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------TGAGGTACAGCTCCCGCGAC
GCCCCATCATTTTTGTTGGTGAAGCGCGTCCCATCCTCGGATCGTGGCCGCGGCGTTCAATTTCGACGCGCGCTTCCCTC
TTTAAAGCCCCTTGCCGGCGCCTCGCCGCGTAGTGCGTTGTGTCCTCCCCAAGTGCGCGCGTTCGCTCGATCCATGGCCA
TGGAGGACGACGAGACGGCGACCCAGAAGAGCCGCTTCTTCCGCGACGCGCGCGTGGAGGCCATGCAGCGGCGCGTGGAC
GAGGTGCACGCGGATGCCGAGGACCCCTACACCATCTTCCGCCTCCCCGCGGCCGTGCGCGAGCGCCACCCCGACCTGTA
CGAGCCCCAGCTCGTGTCCGTGGGGCCCTACTACCACGGCCGCGCCGGGCTCGCCGCCGCGCAGCAGCACAAGTGGCGCC
TCCTGCGCGACTTCCTCTCGCGGACAAACGAGAAGGGGGCAGCCGGCGGCAGCCAGCTGGGCGCCTACTTGCGCTGCGCG
AGCGCGATCGAGGCCGACGCGCGGCGGTGCTACGCGGAGGGGTTCGACGGCGTGGGCGCGGACGACTTCGCGGAGATGCT
GGTGCTCGACGGCTGCTTCCTGCTCGAGTTCTTCCTGCGGAAGGGCGAGGGCCAGCTCGCCGCGCCCGGGGGCGCCAAGT
GGGCGTGGCAGCACATGTACCACGACGTCCTCCTGCTCGAGAACCAGATCCCCTTCTTCGTCGTCGAGAAGCTGCACGCC
ATCGCCTTCCCCGGCGAGGACGGCGGGCCCGACAGCGAGGGGCTCCTCGACATCTTCTGCAAGGCCCTGGCCGGCGACCT
GCCGTCGAGCCGCGCCATCCGGCCGCGGAGCGGCAAGACGATACACCACCTCCTGCACCTGCACTACGAGTGCAACGTCC
GCAGCGCGTCCGCGGACGCCAGCGACGCCAAGGGGCGCAACAACGGCAAGGCCGACGCCAACGGCGCGTCGTCGCTGGCC
GTGTGGAAGCAATCGCCGGTCCCGTCCCCGCGCTCCAGCGACGGCGCCGTGAAGGGCCGGCTGACGTCGATGGTCCCGCA
AGCGGCCAAGATGGAGGAGGCCGGCGTGACGTTCAAGAGGAAGGCGACCCCGCGCGACATGTTCGACGTGAGCTTCCGCT
ACGGCGTGCTGCACATGCCGGCGTTCGTGGTGGACGAGGCCGCCAAGGTGCTGCTGGCCAACCTGGTGGCGTTCGAGCAG
GGCGGCGGCCGCGCCGCCAGGCAGCTGGACGGGGGCAACCTGGTGACGGGGTTCGTGGCGCTAGTGGGGTCCCTGGTGAA
CACGACGAGGGACGTGGAGGTGCTCCGGCGGTGTGGCGTCATGCACTGCAT--------GGTCACCCACGACGAGGCCGT
CAGGTACTTCAGCCACGTGGTGCAGTACACGACCATGGACTACGACCGCCACCTGCTCGCCTGCTTGTTCCGAGACATCC
GAGAGCACTGCCAGTGGAG--CCGATGACCGATGCGTGCGCACGTAGCTGATTCTTTGCTCGACTATTATCAAGTCGATC
TCCACCACTTTGTTTGTTCTCTATACATGACAATACGTTTCCTTCTT-CTGTTCTAC--TCTTTTTTTCCCCAATGGTTA
CTCTACTCTCTCCTGTCACAAAATATAA-GATGTACTCCCTTCATTGTAAGGTCTA-TTATTTTCGGCACGGTGAACAAG
ACACATAATTATGCATAATTTAGGATGAAAATAACCTTGGCCAAATCACTGGTTAGTGT-AAGTAAATCATTTAGTCTAG
AAAAATGAAGAGATACACGCAATCAGGAGAGAGACACTTTTCTT--TTCTTCTCTCCAAAGAAAGATATATGCAATCGGG
AGAGAGATACTTTCTT-TTTCTAGAGGGTTGAAAACAGAATTTC-AAAAAATAGATAAAATGCATCTTACATTGTGGAAT
TTTATA---AAAAACAAATACATCTTAT--ATAGGG--------------------------------------------
----------CAATTACTCCATTTGATGGGTGTAATTAATAAGCTCTTTTAGGACACTTCTAAATTGATTGATACAAGCC
ATTTATTTTTGTTAATCCAGTGACTAATATTAGGAGTATTAGGTAAGATGCTACCAAAGATTTTGTAGTGCTGAGAGTAA
TTCCTACGGATCCCGTATCCATAAAATAACTACCGTTCAGAAAAAGTTTGGGC-AAAAACGTCGCCAACAGATCCCGTAA
ACATGGAATAAATT-GCAGGATCTTGTAAACTTGACCTTAACTTTCCTTTGGTACACGCGAAGTTTTGCTTCCCGTAAAC
ATTTGGCAGCAAAGTAACCACCTGAAACTTCACGCCGCGCCGCCGGTAAGCCGGCGCGCCATCGCGAAAGCCACCACGCC
GCCGGAAAGCCGACGCGTCGATGTGCCCCGCCGACCTGCCGGAATGCCGT----CA----TGTCACTGACTAGCGGG--C
CCTAGAGCATTATCTAG
>chr4B_1
TGGCGGCGTCGAACATGGGGTGGTGCGTGTGCAGTATGGGA--TGAGCTTGTGGCATACTCCAAGGTGCGGAGCATGATC
---CAAACGGCACTCCTTGACGTGCGACCCCGTCGTGCGTGTACGTCAGCCGTCACAACCAATGTACT-TAATCACCATT
GGAAAATATGCATGGAAATGCCAGGC-------TGCTTACGACGTCGACTTCATCTCCGCGACCAAGTAAAAAAC---TT
TTTTT-----ATTCGCAAAAAAAC----TTTTTCTTACCGTTCTTGTTTGCCACGCCTATGACCCCGTCCACGCTTGAAG
GCCTGAACTCGAACCAGTCATTTTTGCCATCCGTCACCGATTTCATAAACTGATTTTGGACATCCCAATCCTGTAGGGTC
CAGGTGTATGCTAAACATGAAATATAAGAACCACTGACCAAAGTAAAAATTGACGTCACAATCATCACTGCCGTACCGCC
ATAAACACGCCGAAGCTGGGTAAGCTCGTATTCTAAGGGCATGTACAACGGGAGCAGCACTTGGTGCTGCCCCAGTACAT
CCACGACAGCAAAAAAAAATGAGACCATCGTCCTTACTCTAGCCACCCAACGGGAACCACCATCTGTGGAACCTAGTGAC
GCATACAAAGAAGGATGAGTGCTCGTCCTTTTCTCAAGCAAGGACAGCATGAGCACAGCAAGCAAGCGGGGGTCATTTCG
CTTGCTTTTTCTTCTTAATCTAGCTTTTGGCAGCGAGGAGACGAGTTCTTCTGCAAGAGTCCGCTTTCATCTGCAAGCAG
CAGGTAGATGTGAGCTGGACTGTAGAATCCAACTTGGAGACCTGGGGCATCTGTCCAGCCTGGCCCGTTGGCCATGCCCT
AATGTATCAGCGATGGTGACCGATTT----------------GTGTGTGTGTGTGTGTTTAGCTGTAAAGTATCAGTAAT
TATTTTTTTGTCCTCCTTTGCCCCATTTTGGTTTTTGAGATCCCGAATATACAAAAAATTGGTAGTACTTTAATTTTGCC
CTGTCTTTTTTTTTTTTTTTTGAGGATTAGCATAATTTTGCCCTGTAGATTCAAAGCCTACGCGAGACTGGCGTAGACTA
GGAGTGGAGAGATGCAACTTTTCCAAGCACATTTCGTCAAA-GTACGCTGCGTGGGTATATGGAAGTTTTAGACACGTCG
AAG-----------CTAACATACACGACGTAACAATCCAGGTGAGGCAGGGGCGGCGCTAGGGGTATTCTTGTGTCTTCA
TGTGAATACCCATGATTTTTACAAAACAGTGTTGATTTTGGTAAAAGAGTCACAATTTTTAAAAAACAGCAATGATTTTA
GTAAAATGAATACACATGAATATCCGGTTGCAAATTCGTGGAGCCGCCACTGAGGTGAGGTGAGGTACAGCTCCCGCGAC
GCCCCATCATTTTTGTTGGTGAAGCGCGTCCCATCCTCGGATCGTGGCC-----------------CGCGCGCTTCCCTC
TTTAAAGCC-------GGCGCCTCGCCGCGTAGTGTATTGTGTCCTCCCCAAGTGCGCGCGTTCGCTCGATCCATGGCCA
TGGAGGACGACGAGACCGCGACCCAGAAGAGCCGCTTCTTCCGCGACGCGCGCGTGGAGGCCATGCAGCGGCGCGTCGAC
GAGGTGCACGCGGAGTCCGAGGACCCCTACACCATCTTCCGCCTCCCCGCGGCGGTGCGCGAGCGCCACCCCGACCTGTA
CGAGCCCAAGCTCGTGTCCGTGGGGCCCTACTACCACGGCCGCGCCGGGCTCGCCGCCGCGCAGCAGCACAAGTGGCGCC
TCCTGCGCGACTTCCTGTCGCGGACAAACGGGAAGGGG------------------CTGGGCGCCTACTTGCGCTGCGCG
AGCGCGCTCGAGGCCGACGCGCGCCGGTGCTACGCGGAGGGGTTCGACGCCGTGGGAGCCGACGACTTCGCGGAGATGCT
GGTGCTCGACGGCTGCTTCCTGCTCGAGTTCTTCCTGCGGAAGGGCGAGGGCCAGCTCGCCGCGCCCGGGGGCGCCAAGT
GGGCGTGGCAGCACATGTACCACGACGTCCTCCTGCTCGAGAACCAGATCCCCTTCTTCGTCGTCGAGAAGCTGCACGCC
ATCGCCTTCCCCGGCGAGGACGGCGGGCCCGACAGCGAGGGGCTCCTCGACATCTTCTGCAAGGCCCTGGCCGGCGACCT
GCCGTCGAGCCGCGCCATCCGGCCGCGGAGCGGCAAGACGATACACCACCTCCTGCACCTGCACTACGAGTGCAACGTCC
GCAGCGCGTCCGCGGACGCCAGCGACGCCAAGGGGCGCAACAACGGCAAGGCCGACGCCAACGTCGCGTCGTCGCTGGCC
GTGTGGAAGCAGTCGCCGGTCCCGTCCCCGCGCTCCAGCGACGGCGCCGTGAAGGGCCGGCTGACGTCGATGGTCCCGCA
GGCGGCCAAGATGGAGGAGGCCGGCGTTACGTTCAAGAGGAAGGCGACCCCGCGCGACATGTTCGACGTGAGCTTCCGGT
ACGGCGTGCTGCACATGCCGGCGTTCGTGGTGGACGAGGCCGCCAAGGTGCTGCTGGCCAACCTGGTGGCGTTCGAGCAG
GGCGGCGGCCGCGCCGCCAGGCAGCTGGACGGGGGCAACCTGGTGACGGGTTTCGTGGCGCTGGTGGGGTCCCTGGTGAA
CACGACGAGGGACGTGGAGGTGCTCCGGCGGTGTGGCGTCATGCACTGCATGGTCAGTTGGTCACCCACGACGAGGCCGT
CAGGTACTTCAGCCACGTGGTGCAGTACACGACCATGGACTACGACCGCCACCTGCTCGCCTGCTTGTTCCGAGACATCC
GAGAGCACTGCCAGTGGAGAGCCGATGACCGAT-CGTGCGCACGTAGCTGATTCTTTGCTCGACTATTAT-AAGTCGATC
TCCACCACTTTGTTTGTTCTCTA--CATGCCAATACGTTTCCTTCTTTCTTTTCTACTATCTTTTTTTTTCCAATGGCTA
CTCTACTCTCTCTTGTCACAAAATATAA-GATGTACTCCCTTCATTGTAAGGTGTATTTATTTTTGGCACGGTAACCAAG
ACAAATAATTATGCATAAGTTAGAATGAAATTAACCTTGGTCAAATCATTGATTAGTGGCAAGTAAATCATTTAGTTTAG
GAAA-TGAAGAGATGCACGCAATCAGGAGAGAGACAGTTTTCTT--T---TCTCTCTAAGGAAAGATATATGCAATCGGG
AGAGAGATACTTTTCT-TTTTTAGAGGGTTGAAAACAGAATTTC-AAAAAGTAGATAAAATGCACCTTACATTGTGGAAT
TTTATA---GAAAACAAATGCATCTTATATAAAGGAACGGAGAGAGTGCTCCACTGTCGTGGTATG--------------
-------------TTGCTCCACTGGATGGGTGTGATTAATAAGCTCTTTTAGGACACTTCTAAATTGATCGATACAGGCC
ATTTATTTTTGTTAATCCAGTGACTAATATTAGGAGCATTAGGTAAGATGCTACCAAAGATTTTGTAGTGCTGAGAGTAA
CTCCTACGGATCCCGTATCCATAAAATAACTATCATTTAGGAAAAGTTTGGGTAAAAAACGTCGCCAACAGATCCCATAA
ACATGGAATAAATTT---GGAGCTTGTAAACTTGACCTCAACTTTCCTTTGGTACATGTGAAATTTTGCTTCCCATAAAC
TTTTGACAGCATGGTAACCACCTGAAACTTGACAACGCGCTGCCGGTAAGCCGGCGCGCCATCGCGGAAGCCACCACGCC
GCCGGAAAGCCGACGCATCGATGTGCCCCGACGGCCTGCCGAAATGCCGT----CATGCGTGTCACTGACTGGCGGGGAC
CCTAGACCATTATCTAG
>SNPs
---------S-S--------------------S-----S--SS-------------------------------------
--------------------------------------S-----------------------------S-----------
---------------S----------SSSSSSS-----------------------------------------SSSS--
--------------------------------------------------------------------------------
---------------S---------------------------------------------S------------------
------------------------------------S-------S-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------S------S--------------------------------------------------------
-------------------S----------S-------------------S-S------------------S--------
---S-------------------------------------------------------S-------S------------
-----------------------------------------S--------------------------------------
-----------------------------S---S----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------S------------------------------------------------------------
------------------------------S-------------------------------------------------
---------------S----------------------------------------------------------------
----------------------------S---------------------------------------------------
----------S---------------------------------------------------------------------
-----------------------S--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S---------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------S-------------------
------------------------S-------------------------------------------------------
----------------------------------------------------------------------S---------
---------------S-S----S---------------------S-------------S---------------------
----------------------------S------------S---S-S----------------------S----S----
-----------------------------------------S--------------------------------------
---------S----------------S--------------S--SS--------------S-----------------S-
----------------S--------------------------SS----------------------------S-S----
S-----SSS------------------S-------------------S--S----S-S-S------SSSSSSSSSSSSSS
SSSSSSSSSS------------------------------------------------------------S---------
------------------------------------------------------S-------------------------
----------------------------------S-----------------------------------S---------
---------------------------------------------------S----------------------------
-------------------S---S------------------------------S-------------------------
S-S---------------S----------S--S-----------------SSSS-------------------S------
-----------------
>forward_336
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAG
GCCTGAACTCGAACCG----------------------------------------------------------------
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>reverse_2825
--------------------------------------------------------------------------------
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------------------------ATACACGACCATGGACTACGAC----------------------------------
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-----------------
>forward_1100
--------------------------------------------------------------------------------
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----------------------------------------CCCTGCCGAATCAAAGTCTG--------------------
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>reverse_3069
--------------------------------------------------------------------------------
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----------------------------AGATGTACTCCCTCCATCGC--------------------------------
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-----------------
