>input_sequence_55453
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-------------------------------------------------------------------------ATGAAGG
GCGGGGTCGTCGACGACTTGAGGGTTATGTTCACCAGGAAGGAGTCCTCCACCTGCCTCGCCAGGTCAGTGATGTTCCTC
GTGATCTTCGCGGTCGGCGTGATCGCCGGCCTCTGGACGGCCACCGGGCCGCGCACCCAGTACACCAGGACCTACAACAA
CATCGTCTTCCCCAGCACCACCACCAC---TGTCTATGCTGAGGCCGGCGCCGAGGCGGAGGCCGGCTTCGCGGAGTTCG
TGGCCCCGACGCGGCTCATGCACGACATGACGGACGACCAGCTCTTCTGGCGCGCCTCCATGGTGCCGGTGGCCGCCGAG
TACCCGTTCAACCGCGTGCCCAAGGTGGCCTTCATGTTCCTCACCGGCCGCGGCGAGCTGCCGCTCGCCCCGCTCTGGGA
GCGCTTCTTCCGCGGCAACGAGGACCGCTTCTCCGTCTACGTCCACGCGCCGCCGGGAATGACCGTCAACGTCTCCACCG
ACTCGCCCTTCTACGGCCGCCAAATCCCAAGCCAGGTACGTAACGTACATGCT-----ACACGACACGGCACAGCACAAT
GCCGCCGGTGCCATGACCGGCGGCATGC----ATCCTCACGTGCGGCCATTAATTCTTTTCCGCGTGCGTG----CGTGC
AGGAGACGGCGTGGGGGTCGATATCGCTGATGGACGCGGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAAC
GAGCGCTTCGTGCTGCTCTCGGAGAGCTGCATCCCGCTGCACAGCTTCCGGGCGGTCTACGACTACCTCATCGGCTCACG
GCACAGCTTCGTGGAGGTCTACTTCCAGCAGACGAAGCAGTGCCAGGGCCGGTACAGCCGCCGCATGGCGCCGGCGATCA
GGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGCCGCGACCTGGCCATCGACGTCCTCGCCGACACCAAG
TACTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCGGACGAGCACTACCTCCCGACCACCGTGAACATGCT
GCACGGCGCCAGGAACGCCAACCGCACGGTGACGTACGTCGACTGGTCCAAGGGCGGCGCGCACCCGGCCAAGTACACGG
CCGGGAACGTGACGGCGGCGGCGATCCAGGGCATAAGGAGGAGGAGGTGGAGGAACGACAGGCCCTGCTATTACAACCAG
AGGCCGACGTCCATGTGCTTCCTGTTCGCCAGGAAGTTCGCGCCCGACACGCTCGGGCCCCTGCTCAACATGTCGTCGGC
GGTCATGGGGTACTAG----------------------------------------------------------------
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>chr3D_1_TraesCS3D01G379500
CTTCTCCCCGTATCACAAAAGCCCCTTGAGGCCATCATCTTGCTAGAGTCGACCGACCACCACCGCCGCATGTGCTTGGA
TCGTCTCCTTTCTGATCTATGTTTGTCTACCAATTTCACTAGTCTATTTACCCTAACCCACGACGCCTTCATATATTTGC
GCCAGATTACACATATCCGACACCTATCTACCAAACTTCACCTTGGCGAATATGCCCGTTGCTATCCTTGAAATTGCCGT
CTTCGCGTATTCGCGCTAGTACATGC-AATCATACGTCCTTCATGTACTTCT---AAAACCGATATGTATTTTGAGGAAG
CTTCCATACACAACCCGGAACGGAAGCTGCGCGCGCGCACGTACGCGCCTTGGATTCCTATGCATATACGTCCTCGAAAC
TATAACTGACATATATCCCGTCAAGCTGGACAGCATAT--CGATCGAGCATACCTAGGGCTTGACATTACCGAGAAGACT
CGTGTGTCCCCGCGACGGCGCTCGCCGTATATAAATCGCCTTCCCAGGTGCACACGCTACGTACTTCAAACGCGGGAGAT
CCTCCTCTCTCGCGCGCCTCGCCCCCTTTTTGTTCCCTCGATCCCTATCTCGGTCTCC---CCTCCTTTTGGCCGCATCT
CGGCCTGTTTTTCGCACGTTACCACCGCCATCCTGGGAAACACCGATCGATCGG-CCCGCGGCTGCATATACCTTTCTCC
GGCTCTCCGCCTCTCTCCATGGCTTGCCCGTGAAGGCTAGCTAGCTCCCGGGAA---TCAGGAGCCAGAGAGGTATACGT
ACTGGAGTGCGCGGCTCGTCCTGGCATCGCATCGTATGCTTTGCTAGCCGAGCCTCGCAAGCGAT---CCGCCGAGCTTC
CCGTTTAAATCCGTCGACCGA--------TCGAGCAGCAGAGCTCTCCCCGTCGTTCATGTCGAGGAGG---GGTTTTG-
-----GTTTTGCCGCGTAGTGGAGTTGTACGTTTGCGTCTTGTTGCGTGGCGTGGAGACAAGGGAGCTCGGCCATGAAGG
GCGGGGTCGTCGACGACTTGAGGGTTATGTTCACCAGGAAGGAGTCCTCCACCTGCCTCGCCAGGTCAGTGATGTTCCTC
GTGATCTTCGCGGTCGGCGTGATCGCCGGCCTCTGGACGGCCACCGGGCCGCGCACCCAGTACACCAGGACCTACAACAA
CATCGTCTTCCCCAGCACCACCACCAC---TGTCTATGCTGAGGCCGGCGCCGAGGCGGAGGCCGGCTTCGCGGAGTTCG
TGGCCCCGACGCGGCTCATGCACGACATGACGGACGACCAGCTCTTCTGGCGCGCCTCCATGGTGCCGGTGGCCGCCGAG
TACCCGTTCAACCGCGTGCCCAAGGTGGCCTTCATGTTCCTCACCGGCCGCGGCGAGCTGCCGCTCGCCCCGCTCTGGGA
GCGCTTCTTCCGCGGCAACGAGGACCGCTTCTCCGTCTACGTCCACGCGCCGCCGGGAATGACCGTCAACGTCTCCACCG
ACTCGCCCTTCTACGGCCGCCAAATCCCAAGCCAGGTACGTAACGTACATGCT-----ACACGACACGGCACAGCACAAT
GCCGCCGGTGCCATGACCGGCGGCATGC----ATCCTCACGTGCGGCCATTAATTCTTTTCCGCGTGCGTG----CGTGC
AGGAGACGGCGTGGGGGTCGATATCGCTGATGGACGCGGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAAC
GAGCGCTTCGTGCTGCTCTCGGAGAGCTGCATCCCGCTGCACAGCTTCCGGGCGGTCTACGACTACCTCATCGGCTCACG
GCACAGCTTCGTGGAGGTCTACTTCCAGCAGACGAAGCAGTGCCAGGGCCGGTACAGCCGCCGCATGGCGCCGGCGATCA
GGCTGCCGCAGTGGAGGAAGGGCTCCCAGTGGTTCGAGCTCAGCCGCGACCTGGCCATCGACGTCCTCGCCGACACCAAG
TACTACCCGCTCTTCCGGCGGCACTGCCGGCCGTCGTGCTACCCGGACGAGCACTACCTCCCGACCACCGTGAACATGCT
GCACGGCGCCAGGAACGCCAACCGCACGGTGACGTACGTCGACTGGTCCAAGGGCGGCGCGCACCCGGCCAAGTACACGG
CCGGGAACGTGACGGCGGCGGCGATCCAGGGCATAAGGAGGAGGAGGTGGAGGAACGACAGGCCCTGCTATTACAACCAG
AGGCCGACGTCCATGTGCTTCCTGTTCGCCAGGAAGTTCGCGCCCGACACGCTCGGGCCCCTGCTCAACATGTCGTCGGC
GGTCATGGGGTACTAGCTAGTCCCCGCCGCGCCGCCGC-CGGCGATGATCGGACCAATTCTTCCATGTTTGTAACTTAGG
ATC--TATATTCAGCAGCCTCTTGACCATCCTGTGACCCGTGAACATAAAACGCCTCCTCTTCATTTGCCGGCACCACAT
CTTGTCGAATTCGCTACAGTATGCATGGTCTGAGAAAAGAG-----AAAAAAAAGGAAGGTTAGTTTAGGGATAAGCATT
CAGCAGCATATCTCCACCACGTTGACTGGTGGAGAACTTGTTGCCTAGTTGTCCCAAGGTGTTTGTGCAGCACCTACTGG
CACTAGTGCAGCACACACACAAGTTGCTCCGTTCTGCTGCTGCTGGGCTACCAAACGCCAATTGGCACTGAACCACCACA
ACTCCCAAACAGGGTTGGTTTGGTTGCTCTTTCCTTTCCAGGAGCATCAGGGGCCCAACATCTGCTGGAGGAACTGCGCT
GCACCAACCATCAATTCCAGCTCCTCCTCCCCTCCCCTCCCTTCCCATCAGCTAGATCATTTCATTCAATTTGCACGCTC
GAGTACGAGCGATTCATTGCCATGGTCCAGTTTCGTCGATTTCTCCGGATCGCCCGGGCTTTTCTCGCCTACCAAATGGC
CCATCCACGATCCAAGCATCT---GCAGCAGTATGATTAACTGGTGAAACTGTCCTGAATTCCTTGAGATTTAAGCACCA
CCAGGT---------TGTCAGTTGGTGACAAGGAAAAGCTGGGGAA---TGCACAAAGCAAACC-----TGTAATGTAAA
TTCCTCGGCCAAGCAAGGGATTATCGCGAAGCTGGCACCAGCGCACGCTAGTAACTGACGGAACGAGCACCAATTAACTG
CACCTTCAGATAGTTAA------------TGGAATGAATGAACTGGAGGCATCAAGAGGCCAAGAAAACAAGGCGAGATC
TCGCGTGTACATACAGCTCATGGACCAAACATTTACTATACTATCCACATAATGCTTGCCTCACGTTTCATCATATATCA
TATATAGAGAGAGAGA
>chr3B_12
ATCACAAG------------GCCCCTTGAGGCCATCATCTTGCCAGAGTCGACCGACCACCACCGCCGCGTGTGCTTGGA
TCGTCTCCTTTCTGATCTATGTTTGTCGACCAATTTCACTAGTCTGCCTATCCTAACCCACGATGCCGTTATACATTTGC
GCCAGATTACACATATCCGACACCAATCCACCAAACTTCATCTTGACGAATATGCCCTATGCCATCCTTGAAGTTGTCG-
-----CGTATTCGCGCGAATACGTGCAAATCATACATCCTCCATGTACTTCTGAAAAAAACGATATGTATTTTGAGGAAG
CTTCCATACACAATCCGGAACGGAAGCTGTGCGCGCGCACGTACGCGCCTTGGATTCCTATGCATATACGTCCTCGAAAC
TA--ACTCACATATACCCCGTCAAGCTGGACAGCATAT--CGATCGAACATACCTAGGGC-TGACATTACCGAGAAGACT
CGCGTGTCTCCACGACGGCGCTCGCCGTATATAAATCGCCTTCCCAGGTGCACACGCTACGTACTTCAAACTCGGGATAT
CCTCCCTCTCGCG------CGCCCCCTTCTTGTTCCCTCGATCCCTATCTCGGTCTCCTCCCCTCCTTTTGGCCGCATCT
CGGCCTGTTTTTCGCACGTTACCACCGCCATCTTGGGAAACACCGATCGACCGATCCCGCGGCTGCATATACCTTTCTCC
GGCTCTCCGCCTCTCTCCATGGCTTGCTCGTGAAGGCTGGCTAGCTCCCGGGAA---TCAGGAGCCAGAGAGGTATACGT
ACTGGAGTGCGCGGCTCGTCCTGGCATCGCATCGTATGCTTTGCTAGCCGAGCCTCGCAAGCGAT---CCGCCGAGCTTC
CCGTTTAAATCCGTCGACCGATCGATCGATCAAGCGGCAGAGCTCTCCCCGTCGTTCATGTCGAGGGGTTTTGGTTTTG-
-----GTTTTGCCGCGTAGTGGCGTTGTACGCTTGCGTTTTGTTGCGTGGCGAGGCGACAAGGGAGCTCGGCCATGAAGG
GCGGGGTCGTCGACGACTTGAGGGTTATGTTCACGAGGAAGGAGTCCTCCACCTGCCTCGCCAGGTCAGTGATGTTCCTC
GTGATCTTCGCGGTCGGCGTGATCGCCGGCCTCTGGACGGCCACCGGGCCGCGCACCCAGTACACCAGGACCATCAACAA
CATCGTCTTCCCCAGCAGCAGCACCACCACCGTGTACGCC------------------GAGGCCGGCTTCGCGGAGTTCG
TGGCCCCGACGCGGCTCATGCACGACATGACGGACGAGCAACTCTTCTGGCGCGCCTCCATGGTGCCGGTGGCCGCCGAG
TACCCGTTCAAGCGCGTGCCCAAGGTGGCCTTCATGTTCCTCACCGGCCGCGGCGAGCTGCCGCTCGCCCCGCTCTGGGA
GCGCTTCTTCCGGGGCAATGAGGACCGCTTCTCCGTCTACGTCCACGCGCCGCCGGGGATGACGGTGAACGTCTCCACCA
ACTCGCCCTTCTACGGCCGCCAAATCCCAAGCCAGGTACGTAACGCACGTGCCACACGACACGACACAGCACAGCACAAT
GCCGCCGGCGCCATGACCGGCGGCATGC----ATCCTCACGTGCGGCCATTAATTCTTTTCCGCGTGCGTA----CGTGC
AGGAGACGGCGTGGGGATCGATATCGCTGATGGACGCGGAGAAGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAAC
GAGCGCTTCGTGCTGCTCTCGGAGAGCTGCATCCCGCTGCACAGCTTCCGGGCGGTCTACGACTACCTCATCGGCTCACG
GCACAGCTTCGTGGAGGTCTACTTCCAGCAGACGAAGCAGTGCCAGGGCCGGTACAGCCGCCGCATGGCGCCGGCGATCA
CGCTGCAGCAGTGGAGGAAAGGCTCCCAGTGGTTCGAGCTGAGCCGCGACCTGGCCATCAGCGTCCTCGCCGACACCAAG
TACTACCCGCTCTTCAGGCGGCACTGCCGGCCGTCGTGCTACCCGGACGAGCACTACCTCCCGACCACCGTGAGCATGCT
GCACGGCGCGCGGAACGCCAACCGCACGGTGACGTACGTCGACTGGTCCAAGGGCGGCGCCCACCCGGCCAAGCACACGG
CCGAGAACGTGACGGCGGCGGCGATCCAGGGCATCAGGAGGAGGAGGTGGAGGAACGACAGGCCCTGCTATTACAACCAG
AGGCCGACGTCGATGTGCTTCCTGTTCGCCAGGAAGTTCGCGCCCGACACGCTCGGGCCCCTGCTCAACATGTCGTCGGC
GGTCATGGGGTACTAGCTAGCCCCCGCTGCCGCCGGCGGCGGCGATGATCGGACCGATTCTTCCATGTTTGTAACTTAGG
ATCTATATATTCAGCAGCCTCTTGACCACATTGTGACCCGTGAACATAAAACGCCTTCTCTTCATTTGCCGGCACCACAT
CTTGTCGAATTCGCTACAGTATGTATGGCCTTCGAAAAGAGGGGAAAAAAAGAAGGAAGGTTAGTTTAGGCATAATCATT
CAGCAGCATGTCTCCACCACGTTGACTGGTGGAGAACTTGTTGCCTAGTTGTCCCAAGGTGTTTGTGCAGCACCTACTGG
CACTAGTGCAGCACACACA--AGTTGCTCTCTTCTGTTGCTGCTGGGCTACCAAACGCCAATTGGCACTGAACCACCGCA
GCTCCCAAACAGGGTTGGTTTGGTTGCTCTTTCCTTTCCAGGAGCATCAGGGGCCCAACATCTGCTGGAGGAACTGCGCT
GCACCAACCATCAATTCCAGCTCCTCCTCCCCTCCCCTCACC-----TCAGCTAGATCATTTCATTCAATTTGCGCGCTC
GAGTACGAGCGATTCATTGCCATGGTCCAGTTCTGTCGAATTCTCCGGATCGCCCGGGCTTTTCTCGCCTACCAAATGGC
CCATCCACGATCCAAGCATCT---GCAGCAGTATGATTAACTGGTGAAACTGTCCTGAATTCCTTGAGATTTAAGCACCA
CCAGCATCAACAGCGTGTCAGTAGGTGACAAGGAAAAGCTGGGGAA---TGCACAAAGCAAACC-----TG-----TAAA
TTCCTCGGCCAAGCAAGGGATTAG-GCGAAGCTGGCACCAGCGCACGCTAGTAACTGACGGAATGAGCACCAATTAACTG
CACTCTGAGGTTGTTAA------------TGGAATGAATGAGCTGGAGGCATCAAGAGGCCAAGAAAACAAGGCGAGATC
TCGCGTGTACATACAGCTCATGGACCAAACATTTACTATACTATCCACATAATGCTTGGCTCACGTTTCATCATATCATA
TATATAGAGAGA----
>chr3A_14
--CACAAA------------GCCACTTGAGGCCATCATCTTGCCAGAATCAACCGACCACCACCGCCGCTTGTGCTTGGA
TCATCTTCTTTCTGACCTATGTTTGTCTACCAATTTCACTAGTCTATTTATCCTAACCCACGGTGCCTTTATACATTTGC
GCCAGATTACACATATCCGACACCAATCTACCAAACTTCACCTTGGCGAATATGCCCTCTGCCATCCTTGAAGTTGTCGT
CTTCG--------------------------------------TGTACTTCT---AAAACCGATATGTATTTTGAGGAAG
CTTCCATACACAATCCGGAACGGAAGCTGCGCGCGCGCACGTACGCGCCTTGGATTCCTATGCATATACGTCCTCGAAAC
TATAACTGACATATATCCCGTCAAGCTGGACAGCATATATCGATCGAGCATACC-AGGGCTTGACATTACCGAGAAGACT
CGTGTGTCCCCGCGACGGCGCTCGCCGTATATAAATCGCCTTCCCGCGTGCACACGCTACGTACTTCAAACGCGGGAGAT
CCTCCTCTCTCGCGCGCCTCGCCCTCTTGTTGTTCCCTCGATCCCTGTCTCGAT---CTCCCCTCCTTTTGGCCGCATCC
CGGCCTGTTTTTCGCACGTTACCACCGCCATCCTGGGAAACACCGATCGATCGATCCCGCGGCTGCATATACCTTTCTCC
GGCTCTCCGCCTCCCTCCATGGCTTGCCCGTGAAGGCTAGCTAGCTCCCGGGAATAATCAGGAGCCGGAGAGGTGTACGT
ACTGGAGTGCGCGGCTCGCCCTGGCATCGCATCGTATGCTTTGCTAGCCGAGCCTCGCACGCGATCCGCCGCCGACCTTC
TCGTTTAAATCCGTCGACCGACCGATCGATCGAGCAACGGAGCTCTCCCCGTCGTTCATGTCGAGGGGTTTTGGTTTTGG
TTTTGGTTTTGCCGCGTAGTGGCGTTGTACGCTTGCGTCTTGTAGCGTGGCGTGGCGACAAGGGAGCTCGGCCATGAAGG
GCGGGGTCGTCGACGACTTGAGGGTTATGTTCACGAGGAAGGAGTCCTCCACCTGCCTCGCCAGGTCAGTGATGCTCCTC
GTGATCTTCGCGGTCGGCGTGATCGCCGGCCTCTGGACGGCCACCGGGCCGCGCACCCAGTACACCAGGACCTACAACAG
CATCGTCTTCCCCAGCACCACCACCACCACTGTCTATGCCGAGGCCGGCGCCGAGGCGGAGGCCGGCTTCGCGGAGTTCG
TGGCCCCGACGCGGCTCATGCACGACATGACGGACGACCAGCTCTTCTGGCGCGCCTCCATGGTGCCGGTGGCCGCCGAG
TACCCGTTCAAGCGCGTGCCCAAGGTGGCCTTCATGTTCCTCACCGGCCGCGGCGAGCTGCCGCTCGCGCCGCTCTGGGA
GCGCTTCTTCCGCGGCAACGAGGACCGCTTCTCCGTCTACGTCCACGCGCCGCCGGGGATGACGGTGAACGTCTCCGCCG
ACTCGCCCTTCTACGGCCGCCAAATCCCAAGCCAGGTACGTAACGTCCGCGCTACACTCCACGACAAGGCACAGCACAAT
GCCGCCGGCGCCATGACCGGCGGCATGCATGCATCCTCACGTGCGGCCATTAATCCTTTTCCGCGTGCGTGCGTGCGTGC
AGGAGACGGAGTGGGGATCGATATCGCTGATGGACGCGGAGCGGCGGCTGCTGGCGAACGCGCTGCTGGACTTCTCCAAC
GAGCGCTTCGTGCTGCTCTCCGAGAGCTGCATCCCGTTGCACAGCTTCCGGGCGGTCTACGACTACCTCGTCGGCTCGCG
GCAAAGCTTCGTGGAGGTCTACTACCAGCAGACGAAGCAGTGCCAGGGCCGGTACAGCCGCCGCATGGCGCCGGCGATCA
GGCTGGCGCAGTGGAGGAAGGGCTCGCAGTGGTTCGAGCTCAGCCGCGACCTGGCCGTCAGCGTGCTCGCCGACACCAAG
TACTACCCGCTCTTCCGGCGGCACTGCCGGCCGACGTGCTACCCGGACGAGCACTACCTCCCGACCACGGTGAACATGCT
GCACGGCGCGCGGAACGCCAACCGCACGGTGACGTACGTGGACTGGAGCAAGGGCGGCGCGCACCCGGCCAAGTACACGG
CCGAGAACGTGACGGCGGCGGCGATCCAGGGCATCAGGAGGAGGAGGTGGAGGAGCGACAGGCCCTGCTATTACAACCAG
AGGCCGACGTCCATGTGCTTCCTGTTCGCCAGGAAGTTCGCGCCCGACACGCTCGGGCCCCTGCTCAACATGTCGTCGGC
GGTCATGGGGTACTAGCTAATCCCCGCCGCGCCGCCGC-CGGCGATGATCCGACCGATTCTTCCATGTTTGTAACTTAGG
ATC--TATATTCAGCAGCCTCTTGACCACCCTGTGACACGTGAACATAAAATGCCTTCTCTTCCTTTGCCGGCACCACAT
CTTGTCGAATTCGCTACAGTATGCATGGTCTGAGAAAGGAG------AAAAAAAGGAAGGTTAGTTTAGGCATAAGCATT
CAGCAGCATATC-------------------GAGAACTTGTTGCCAAGTTGTCCCAAGGTGTTTGTGCAGCACCTACTGG
CACTAGTGCAGCACACACACAAGTTGCTCTCTTCTGTTGCTGCTGGGCTACCAAACGCCAATTGGCACTGAACCACCGCA
ACTCCCAAACAGGGTTGGTTTGGTTGCTCTTTCCTTTCCAGGAGCATCAGGGGCCCAACATCTGCTGGAGGAACTGCACT
GCACCAACCATCAATTCCAGCTCCT-----CCTCCCCTCAGC-----TCAACTAGATCATTTCATTCAATTTTCGCGCTC
GAGTACGAGCGATTCATTGCCATGGTCCAGTTTCGTCGAATTCTCCGGATCGCGCGGGCTTTTCTCGCCTACCAAATGGC
CCATCCACGATCCTTGCACCTGCAGCAGCAGTATGATTAACTGGTGAAACTGTCCTGAATTCCTTGAGATTTAAGCACCA
CCAGCATCAACAGGGTGTCAGTTGGTGACAAGGAAAAGCTGGGGAAGAATGCACAAAGCAAACCTGCAATG-----TAAA
TTCCTCGGCCAAGCAAGGGATTAGCGCGAGGCTGGCACCAGCGCACGCTAGTAACTGACGGAACGAGCACCAATTAACTG
CACTCTGAGATAGTTAACTCGATAGTTAATGCAATGAATGAACTGGATGCATCAATAGGCCAAGAAAACAAGGCGAGATC
TCGCGTGCACATACAGCTCATGGACCAAACATGTACTATACTAGCCACATAATGCTTGCCTCACGTTTTAT------ATA
TTTATAGAGAGA----
>SNPs
S-SSSSSSSSSSSSSSSSSS-----------------------S-------------------------S----------
--------------------------------------------------S------------S-----S---S------
------------------------S--------------------------------SS---S---------S---S---
----------------S-S---S------------S----S---------------------------------------
-------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------S---------------------------------------------------
-----------------------------------------------------S--------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------S-S-----------
----------------------S--------S-----------------------S------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
---------------------------------------------------------S-----S--S-------------
------------------------------------------------S-------------------------------
--------S-----------------------------------------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------SS-------------------
--------------------------------------------------------------------------------
---------SS---------------------------------------------------------------------
---S------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
----------------------------S---------------------------S-----------------------
----------------------------------------------------------------------S---------
--------------------------------------------------------------------------------
-----------------------------SS-----S----------------------------------------S--
--------------------------------------------------------------------------------
---------------------------------------S-SSSSSS---------------------------S-----
---------------------------------------S----------------------------------------
--------------------------------------------------------------------------------
----SS-----------------------------------------------------------------SSSSS----
-----------------------S--------------------------------------------------------
---SS-S-------------------------------------------------------------------------
----------------------------------------------------------------------------SSS-
------------SSSS
>forward_992
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------------CGCGTAGTGGAGTTGTACGT------------------------------------------------
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>reverse_2195
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----------------------------------AAGGAGGAGGAGGTGGAGGA--------------------------
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>forward_1240
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--------------------CCACCACCACTGTCTATGCT----------------------------------------
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>reverse_3115
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--------------------------------------------------------------------------TGTAAA
TTCCTCGGCCAAGCA-----------------------------------------------------------------
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