>input_sequence_55432
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-----------------------------------------------------------------------ATGGCCCTC
CGCGCGCTGGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGGCCCAAGAAGGCCGCCAAGCTGCTCCCCACGGCGCC
------CGCCGTCACCCGCTCCCCCACCGGCAGCGGCGGCAACGGCAAGA------AGCAGCGCAACGACGAGAACTCTG
CGCCGCAGACCAAGCCCGCGTCGCCCGT---GGCGGCCGCGGCTGAGCCGGCCGTGGAGTACGTCCGGTCCGAGGACCTG
CAGCCCGTGCCCGCGCCCAAGGCCCGCGCCGCCGGCCTCGTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGCGA
GGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCGGCCCTCCTCGCCCCCATCCTGTAAGCTCCCCTCTGCCTCT
GAT--TTTTGTTCCTTCTCTTCTGGCGAATTATTTGGATCCCGTAACGGATCTGACTCGGACCTGCGGGTGAATCATGG-
--GGCAGGGAGAAGGTGGTGCTGGGGGTCGTGAAGACGATGAAGAACCCGCGCAGCGCGGTGCTCAAGACCTCCGTGATG
GCCTGCACGGACGTCTTCGCGGCCTTCGGCAACCTCATCTCCTCGGCCTCGGCCGACGCGTTCGACAAGCTGCTGCTGCA
GCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCGCGCCATGGCCACATCCA
TGCCGCCCCTGCCCCTGTTGAAGAAGCTCAGGGCCTACGTCCACCACGCCAACCTCAGGGTCCGGGCCAAGGCCGCCGTT
GCCATGGCGCACTGCGCCGCCAGGATGGTACGTACCGCTTGTCGACTCAAATC----CAGCGGAACTCGATCTGTTTGTT
TCGTTTTACTGACGCACGAGATCATGTGTGAATTGGCAGGACGTGGAGACGATGAAGGAGTTCGGGCTGCCGGCGCTGCT
GCAGGTGGCCGCGGAGCTGCTGAACGACCGGCTGCCGGAGGCGCGCGAGGCCGCCCGCAGCATCGTCGGCTCCACGCACG
CCGCCTTCTTCT---TCAAGGAGGCTGCCGAAAAA------GAGCAGGAGAAGAAGGAGAATGAGCTAAAGGAGCAGGAG
AAGGGGAAGAAGGAGCAAAAGGAGCAGGAGGAGGGGAAGAAGGAGAAGGAGGAAGAGGAGGAGAAGGAGAAGGAGAAGAA
GGCAGAGCCGTCGGGCGTGGCGGCGGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGCCCATCTCGGCGCAGGCCGTGG
CCAAGATCGTCTCGCAGTTGCAGGCACAATAA------------------------------------------------
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>chr3D_1_TraesCS3D01G441700
TCCAACAAGGACGCCGACACGAATCTAGATAGAATGCATCTGTTTTTGCTTTGCTGGTGCTGGCAGTTTTGGAGCTAGTA
CGAACGAACAATGAACTGGACACCTTAAGTTGTCTTGAGAAGA---GATGTGAAATTTCGATAGCTGAAGTCAGGTTTGA
TGTAAGCATATGTCGGCTTGTTAAGTGTAAGAACTAGGTAGCTCTTTGAAATGAAGGCATTCAGAAGTTTTTTCCTCTTG
CCAGAGAAGATGAGCATGCACTCTTTTTGAAAAT-GAAGTCTCATTTGGAGGCAGTGAGGCAGGGGTGGCAATGACAACT
CCAGCAGGTGGTCCACCATTCTCTGAGGTTTCTCCCGGTTATCTCGTGATCAATTTTCTTTCTAGAACCATCTCGTGATG
GTGGCAGTAGCAGTTGCATCTGTTATTTTTTTTTTCCTTTTAAATTTTCTTTTCAATAAGGGTGTGGCTAGGTTTTTGAG
ACTTCGCG----------AGCCAAGTGATTGAGCATATGAAAAGATGAAAGAAAATATTAAAAAGAAAATTTTACAGGGA
TCTTCATGTAAGATTTAACAAATATATATAGACTTCGTTAAGTCTCAGTTGACTGAGATTTAGCAATCCTGTTTCAATAA
ATTATATTAATAAATTATATCTTTTTAGGGGAATTCAGTAAATTAGGTACAGTAGATCTCAAGAGTTACTTCCTTCTTTA
ATTTTTCTTGAGCGAAATTCGCTGGCGAAGCTTTTGTCTGGCAACGGCACAAAAGGTAATCAGAGCCCGCATCGCGAAGC
AAACCC-TCCAACGTTCACTTGCCAGTTCGAATCTCAATCTCTTTATAGCCGTTGCAGCCACCCCCA-----TCCTCCAC
ATTTTAAACTCCGACGCCGCCGCAAACCCTTCC----TCCATCCAT-CCATCCACACGCCGCAGCGCAA-GCCCTCCCCC
AAATCTCT---CCTCCCTCCGAATCTCTGCGTCTCCATCCATCAGCAA--GCAAGCGATCCCGTCCCACCCATGGCCCTC
CGCGCGCTGGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGGCCCAAGAAGGCCGCCAAGCTGCTCCCCACGGCGCC
------CGCCGTCACCCGCTCCCCCACCGGCAGCGGCGGCAACGGCAAGA------AGCAGCGCAACGACGAGAACTCTG
CGCCGCAGACCAAGCCCGCGTCGCCCGT---GGCGGCCGCGGCTGAGCCGGCCGTGGAGTACGTCCGGTCCGAGGACCTG
CAGCCCGTGCCCGCGCCCAAGGCCCGCGCCGCCGGCCTCGTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGCGA
GGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCGGCCCTCCTCGCCCCCATCCTGTAAGCTCCCCTCTGCCTCT
GAT--TTTTGTTCCTTCTCTTCTGGCGAATTATTTGGATCCCGTAACGGATCTGACTCGGACCTGCGGGTGAATCATGG-
--GGCAGGGAGAAGGTGGTGCTGGGGGTCGTGAAGACGATGAAGAACCCGCGCAGCGCGGTGCTCAAGACCTCCGTGATG
GCCTGCACGGACGTCTTCGCGGCCTTCGGCAACCTCATCTCCTCGGCCTCGGCCGACGCGTTCGACAAGCTGCTGCTGCA
GCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCGCGCCATGGCCACATCCA
TGCCGCCCCTGCCCCTGTTGAAGAAGCTCAGGGCCTACGTCCACCACGCCAACCTCAGGGTCCGGGCCAAGGCCGCCGTT
GCCATGGCGCACTGCGCCGCCAGGATGGTACGTACCGCTTGTCGACTCAAATC----CAGCGGAACTCGATCTGTTTGTT
TCGTTTTACTGACGCACGAGATCATGTGTGAATTGGCAGGACGTGGAGACGATGAAGGAGTTCGGGCTGCCGGCGCTGCT
GCAGGTGGCCGCGGAGCTGCTGAACGACCGGCTGCCGGAGGCGCGCGAGGCCGCCCGCAGCATCGTCGGCTCCACGCACG
CCGCCTTCTTCT---TCAAGGAGGCTGCCGAAAAA------GAGCAGGAGAAGAAGGAGAATGAGCTAAAGGAGCAGGAG
AAGGGGAAGAAGGAGCAAAAGGAGCAGGAGGAGGGGAAGAAGGAGAAGGAGGAAGAGGAGGAGAAGGAGAAGGAGAAGAA
GGCAGAGCCGTCGGGCGTGGCGGCGGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGCCCATCTCGGCGCAGGCCGTGG
CCAAGATCGTCTCGCAGTTGCAGGCACAATAATCAACTGTTCGAATGA--------------------------------
----------------TCGTC-------------GCGATTCTGTCTGCGATTC-GTAGTGATGCATGCTATCTCGCATGA
TCTGC----CCATGTTCCAGTAGGCTCAAATTATTGGTGTTTCCAGTCCCCCCGATA-AAATTATCTACTACTATTACAG
TTGAAGAAAACATGGTTCCCG--GTCTCAGGAGTGGCTATTTCCCGGAAC-AAAAAAATGCGTCGCTCAGGAAATTCAGC
AGCTTTTCACTGCCTCGCCGGAAAAAACTCTGACCCAGGAGGGATGGTCCAAGACCTGTAGGTACATCGAAAACGACGA-
--CGAGGAG-----------------GCGTCCTATCTTTCAGCTAGTTTCGGTCCAAACGTGTCGCTTTCCAGTGAGCGA
GTG-GTGATCCACGCGAGAGTGACCAGCTGGTGC-----TTGCTTGCTTCCGGGAATCGGAATCCT------CATCTTCT
TCCT--CCCCATATCTCCTGTCGCCCTCCGCGTTCACGCAGCAGCAGCAGCAAAGGCGGCGTCGCACGTTCCTTCC----
---TGCGTCGAGTCCTTGTTCCTTTC---TTCTTGATGGACGGGGGCCAGAGCGTCGCCAAGCGGCACGG------CGCG
GCCGCCGGCGCCGAGGAGGACCCTGACCGGCACCGTGCTCCTCCTCCGGTCCATGAGGCGGCGGATGATCAGGACGACGG
CGACAAGAAGGCGCCTCGACAAGGG---AGCAGGCGGGTCGCTTCCCTCGACGTCTTCCGTGGCCTCACCGTCGCTGTAG
GTCCCCTCCACGGG----------------------------TGTTTAATTCCTCACCCA----GTGAGTTTCATGTCTG
CCTGACCCAAG---TTCCAACTGTGTTCGTTCGTTCGTGTCTGCGCCGCAGCTGATGATACTGGTGGACGGCGCCGGCGG
CGAGTGGCCGGTCATCGGGCACGCGCCGTGGCACGGCTGCAACCTCGCAGACTTCGTCATGCCCTGCTTCCTCTTCATCG
TCGGCATGGCCATCCCACTCTCCCTCAAGGTCCCCCTTCTGAACCCTACTTCCTTCCTTGTCCTGTCAGA
>chr3A_1
TCCGACAAGGACGCCGACACGAATTTAGATAGAATGCCTCTGTTTTTGTTTTGCTATTGCTGGCAGTTTTGGAGCTAGCA
TGAACGAACAATGAACTGGACACCATAAGTTGTCTTGAGAAGAGATGATGTGAAATTTCGATAGCTGAAGTCGGGCTTGG
TGTAAGCA-ATGTCGGCTTGTTATGTGTAAGAAGTAGGTAGCTCTTTGAAATGAAGGCATGCAGAAGTTTTTTCCTCTTG
CC--------------TGCACTCTTTTCGAAAATGGAAGTCTCCTTTGGAGGCAGTGAGGCAGGGGTGGCAATGACAACT
CCAGCAGGTGGTCCACCATTCTCTGAGGTTTCTCTCGGTTATCTCGTGATCAATTTTCTTTCTAGAACTATCTCGTGATG
GTGTCAGTAGCAGTTGCATCTGTTATTTT-----TCCTTTTAAATTACCGAAATCGCGTTGAGATCGCTTCATTGTCTTT
TCCATAGATCGAAGTCTCAGTCAAGTGACTGAACATATAAAAAGATG--------------AAAGAAAATTTTACACGGA
TCTTTATGTAAGAGCTATAAATATTACATCGACTAA--------------GACTGAGATTTAGCAATCTTGTTTCAATAA
ATTAGATTTTC-----------TTTTAGGGGAATTCAGTAAATTAGGTACAG---ATCTCAAGACTGAGATTTCCTTCCT
ATTTTTCCTTGACGCGAAACT----------TTTTGTCTGGCAACGGTGCAAAAAGCAATCAAAGCCCGCACCGCGAAGC
AAACCC--CCAACGTTCACTTGCCAGTTCGAATCTCAATCTCTTCATAGCCGTTGCAGCCACCCCCCTCG---CCTCCAC
ATTTTAAACTCCCACGCCGCCGCAAACCCTTCCTTCCTCCATCCATCCCATCCATACGCCGCAGCGCAAAGCCCTCCTCC
AAATCTCTCGTCCTCCCTCCCCATCTCGGCGTCTACATCTCCATCCATCGGCAAGCGACCCCATCCCACCCATGGCCCTC
CGCGCGCTCGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGCCCCAAGAAGGCCGCCAAGCTGT-------------
-----TCGCCGTCACCCGCTCCCCCACCGGCAGCGGCGGCAACGGC---A------AGAAGCGCAACGACGAGAACTCTG
CGCCGACGCCCAAGCCCGCGTCGCCGGT---TGCGGCTGCAGCGGAGCCCGCCGTGGAGTACGTCCGGTCCGAGGACCTG
CTGCCCGTGCCCGCGCCCAAGGCCCGCGCCGCCGGCCTCCTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGCGA
GGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCCGCCCTCCTCGCCCCCATCCTGTACGTTCCTTTCCGTCTCC
TCTGATTTTGTCTTTTAATTTCTGTCGAATT---------CCGTTCTGGATCTGACCTGAGATCCGTCCGCGGGTGATGA
TTGGCAGGGAGAAGGTGGTGCTGGGGATGGTGAAGACGATGAAGAACCCGCGGAGCGCGGTGCTCAAGACCTCCGTGATG
GCCTGCACGGACGTCTTCGCGGCCTTCGGCAACCTCATCTCCTCGGCGTCCGCGGACGCGTTCGACAAGCTGCTGCTGCA
GCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCGCGCCATGGCCACCTCCA
TGCCGCCCCTGCCGTTGCTGAAGAAGCTTAAATCCTACGTCCACCACGCCAACCTCCGGGTCCGCGCCAAGGCCGCCGTC
GCCATGGCGCACTGCGCCGCCAGGATGGTGCGTACCGCTTGCCGACTCAAATCCAGGCAGCGGAACTCGATCTGTCTGTT
TCGTTTTACTGACGCAGGAGATCATGTGTCGATTGGCAGGACGTGGAGACGATGAAGGACTTCGGGCTGCCGGCGCTGCT
GCAGGTGGCCGCCGAGCTGCTGAACGACCGGCTGCCGGAGGCTCGCGAGGCCGCCCGCAGCATCGTCGGCTCCACGCACG
CCGCCTTCTTCT---TCAAGGAGGCCGCCGAGAAGGAGCAGGAGCAGGAGAAGATGGAGAATGAGCTCCAGGAGCAGGAG
G---------------------------------AGGTGAAGGAGAATGAGGAAGAA------------ATGAAGAAGAA
GGACGAGCTGTCTGCCGTGGCGGCTGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGCCCATCTCGGCGCAGGCCGTCG
CCAAGATCGTCTCGCAGCCGCAGC--------------------------------------------CGCAGCCGCAGC
CGCAATAATTAATTTCTCGTC-------------GCGATTCTGTCCGCGATTTTGTAGTGATGCATGCTATCTCGCATGA
TCTGC----CCATGTTCTAGCAGGCTCAAATTATTGGTGTTCCCAGTTCCCCTGATA-ATAAATTATTTATT--------
---------ACATGGTTCCCA--GTCACCGGAGTAGCCATTTCCCGGAACAAAAAATATGTGTCGCTCAGGAAATTCAGC
AGCTTTTCACTGCCTCGCCGGAGAAAACTTTGACCCGTAGGTAGGCG---GCGTAGCTTC----CATCGAAAACGACGA-
--GGAGGGATAAGAGCAGCTCCGCGTGCGTCCAATCTTTGAGCCAGCTCCGATCCAAACGCGTCGCCGTCCGGTGAACGA
GCGAGTGATCCACGCGAGAGTGACCAGCTGGTGC-----TTGCTTGCTTCCGGGAATCGAAATCCTCCTCATCATCTTCT
CCTCTCCCCCATATCTCCTGTCTCCCTCCGCATTCACGCAGCAGCGGCGGCGGCGGCGGCGACGCATGTCCCTGCTTGCG
TTGTGCGTCGCGTCCTTGTTCATTCTTGATTCTTGATGGACGGGGGGCAGAGCGTCGCCAAGCGGCATGGCGCGGCCGCG
GCCGCCGGCGCCGAGGAGGACCCTGACCGGCACCGTGCTCCTTCACCGGCCCACGAGGCGGCGGATGATCACGACGACGG
CGACAAGAAGGCGCCTCGCAGGGGCAGCAACAGGCGCGTCGCCTCCCTCGACGTCTTCCGTGGCCTCACCGTCGCAGTAC
GTGGCCCGGCCCTCCCACCG--------------------CCTGCTTAATTCCTCTGCCA----CAAAGTTTCGTGTCCG
TCTGATCCAAG---TTCCAACCGTGCGTGTTCGTTTTGGTGCT----GCAGCTGATGATACTGGTGGACGGCGCCGGCGG
CGAGTGGCCGGTCATCGGGCACGCGCCGTGGCACGGCTGCAACCTCGCCGACTTCGTCATGCCCTTCTTCCTCTTCATCG
TCGGCATGGCCATCCCCCTCTCCCTCAAGGT---------------------------------------
>chr3B_732
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--------------CGAAACT----------TTTTGTCTGGCAACGGTACAAAAAGTAATCAAAGCCCGCATCGCGAAGC
AAACCCCTCCAACGTTCACTTGCCAGTTCGAATCTCAATCTCCTTATAGCCGTTGCAGCCCACCCCCCCTCCTCCTCCCC
ATTTTAAACTCCGACGCCGCCGCAC----------------------------------------------CCCTCCTCC
AAATCTCTCATCCTCCCTCCGAATCTCGGCGTCTCCATCCATCAGCAA--GTGATCCCGT---TCCCACCCATGGCCCTC
CGCGCGCTCGACAACACGCTGCCGGCCGCCGTGGCGGACCAGCGCCCCAAGAAGGCCGCCAAGCTGCTCCCCACGGCGCC
CGCCGTCGCCGTCGCCCGCTCCCCCACCGGCAGCGGCGGCAACGGCAGGAAGCAGCAGCAGCGCAACGACGAGAACTCGG
CGCCGCTGACCAAGCCCGCGTCGCCTGTGGCGGCGGCCGCGGCGGAGCCGGCCGTGGAGTACGTCCGGTCCGAGGACCTG
CTGCCCGTGCCGGCGCCCAAGGCCCGCGCCGCCGGCCTCGTGGCGGGGCTCGACTCCAAGGACTGGGTCAAGGTCTGCGA
GGCCCTCAACGACGCCCGCCGCCTCGCCATCCACCACCCGGCCCTCCTCGCCCCCATCCTGTAAGCTCCTCTCTGTCTCC
TCCGATTTTGCCTGTTAATTTCTGTCGAATT---------CCGTTCTGGATCTGATCTGAGATCCCTTTGGTTAA-----
-TGGCAGGGAGAAGGTGGTGCTGGGGATCGTGAAGACGATGAAGAACCCGCGCAGCGCGGTGCTCAAGACCTCCGTCATG
GCCTGCACGGACGTCTTCACGGGCTTCGGCAACCTCATCTCCTCGGCCTCCGCGGACGCGTTCGACAAGCTGCTGCTGCA
GCTGCTGCTCAAGGCGTCGCAGGACAAGCGGTTCGTGTGCGAGGAGGCCGAGAAGGCGATGCGCGCCATGGCCACCTCCA
TGCCGCCCCTGCCCCTGTTGAGGAAGCTTAAGTCGTACGTCCACCACGCCAACCTCAGGGTCCGCGCCAAGGCCGCCGTC
GCCATGGCGCACTGCGCAGCCAGGATGGTACGCACCGCTTGTCGACTCAAATCCAGGCAGCGGAACTCGCTCTGTTTGTT
TTATTTTCCTCACCCGCGA-ATCATGTGTGAATTGGCAGGACGTGGAGACGATGAAGGAGTTCGGCCTGCCGGCGCTGCT
GCAGGTGGCGGTGGAGCTGCTGAACGACCGGCTGCCGGAGGCGCGCGAGGCCGCCCGCAGCATCGTCGGGTCCACGCACG
CCGCCTTCTTCTTCTTCAAGGAGGCCGCCGAGAAG------GAGCAGGAGCAGAAGGAGAATGAGCTCAAGGAGGAGCAG
GAAGAGGGGAAGGAGAAT---GAGAACGACGAGAAGGTGAAGGAGAGTGAGGAAGAGGAG------------GAGAAGAA
GGAAGAGCCGTCGGCCGTGGCGGCAGCGTGGGAGAGCCTGTGCGCGCTGAGCCTGTCGCCCATCTCGGCGCAGGCCGTGG
CCAAGATCGTCTCGCAGTTGCAGGCCCAATAAATCCTATCTCGGCGCAGGCCGTGGCCAAGATCGTCTCGCAGTTGCAGG
CCCAATAATCAACTGCTCGATTCGATTGATCGCAGCGATTCTGTCCGCGATTC-GTAGTGATGCATGCTATCTCGCATGA
TCTGCTGCCCCATGTTCTAGTAGCCTCAAATTATTGGTGTTTCCAGTTCCCCCGATATAAATTATCTATTATTATTACAG
TCGAAGAAAACATGGTTCCCGTAGTCACGGGAGTAGCCATTTCCCGGAACAAAAAAAATGTGTCGCTCAGCAAATCCAGC
AGCTTTTCACTGCGTCGCCGGAAAAAACTTTGACCCAATGTTCCAAGATAGCGTAGCTTC----CGTCGAAAACGACGAC
GAGGAGGGATAAGAAGAGCTCCGTGTGCGTCCAATCTTTCAGCCAGCTCCGATCCAAACGCGTCGCTGTCCGGTGAGCGA
GTG-GTGATCCACGCGAGAGTGACCAGCTGGTGCGGTGCTTGCTTGCTTCCAGGAATCGGAATCCTCCTCCTCATCTTCT
TCCT--CCCCATATCCCCTGTCGCCCTCCGCGTT-----------------------GGCGACGCACGTCTCCTGCTTTG
CGTTGTC------------------------CTTGATGGACGGGGGCCAGAGCGTCGCCAAGCGGCACGGCGCGGCCGCG
GCCGCCGGCGCCGAGGAGGACCCTGAGCGGCACCGTGCTCTA---------CATGAGGCGGCGGATGATCACGATGGTGG
CGACAAGAAGGCGCCTCGCCGGAGCAGCAGCAGGCGGGTCGCCTCCCTCGACGTCTTCCGTGGCCTCACCGTCGCTGTAC
GCAGCCCGGCCCCTTCCCCTTCCACACCAACACGACCACACCTGCTTAGTTCCTATGCCACAAGCAAAGTTTCGTGTCTG
CCTGATCCAAGCTCTTCCAACCGTGCGTGTTCGTTTCGGTGCT----GCAGCTGATGATACTGGTGGACGGCGCCGGCGG
CGAGTGGCCGGTCATCGGGCACGCGCCGTGGCACGGCTGCAACCTCGCCGACTTCGTCATGCCCTGCTTCCTCTTCATCG
TTGGCATGGCCATCCCCCTATCCCTCAAGGT---------------------------------------
>SNPs
---S--------------------S------------S----------S------SS---------------------S-
S-----------------------S-----------------------------------------------S--S---S
--------S--------------S---------S--------------------------S-------------------
--SSSSSSSSSSSSSS-----------S---------------S------------------------------------
----------------------------------S---------------------------------S-----------
---S-------------------------SSSSS------------SS-SSSSSSSSSSS-SSS-S---SSS--S-SSSS
S-SSSSSS------------S-------S---S-----S--------SSSSSSSSSSSSSS---------------S---
----S--------SS--SS--SSS--S--S----SSSSSSSSSSSSSSSS------------------S-----------
----S---SSSSSSSSSSSSSS------------------------------SSS---------S-S-SS-SSSSS-SSS
-------S-SSS--SS-SS-SSSSSSSSSSS----------------S------S-------S-----------------
------------------------------------------------------------------S-------------
------------------------------------------------------S----------------------S--
---------------------------S------------------------------S---S-----------------
--------S-----------------------------------S-----------------------------------
-----------------------------------------------S--------------------------------
------S------------------S-----------------S------------------------------------
-S------------------------------------------------------------------------------
---------------------------------------------------------------------S-----S---S
SS---------SSS--SSS-----S------SSSSSSSSS----SSS---------SS-SSSSSS-SSSS-SSSSSSS--
--------------------------S-----------------------------------------------------
--------------------------------------------------S--S--------------------------
---------------------------------------------------------------------------S----
----------------------------S-S-S-------------------------------S--------------S
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-------------------------S-----S--S--------------------------------S------------
S-S-S-SS-------S-SSSS---S-S--S---SS-SS---------S------------SSSSSSSSS-S---------
--S-----------S---------S-------------------------------------------------------
-------------------------S------SSSSSSSS---SSSS---------------------------------
---------------------------------------------S----------------------------------
-----------------S-----------------------------S--------------------S--S--------
-S------------------------S-S-----S--S----------------------S-------------------
-----------------------------S-------SSS-SSSSS-SSSSS-SSSSS-SSSSS----------------
--S----SS-----------------------S----------S--S-S--S--------S------S---S--------
--------------------------------------------------------------------------------
---------------------------------------------S--S--SSS-------S-------S----------
----------S----------S--SS------------------------------------------------------
------------------------------------------S-S----S---------------------S--------
------------------S-SS--S-----------------S------------------------------------S
--SS--SSSS-SSS------------------------------S----------SS-------SSS------S------
-----S---------------S---SSS-------SSS--SSSSSSS---------------------------------
------------------------------------------------S-------------------------------
----------------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1019
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---------------------------------------TCCATCAGCAAGCAAGCGAT---------------------
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>reverse_2176
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---------------CAAAAGGAGCAGGAGGAGGG---------------------------------------------
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>forward_2167
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-------------------------------------------------------------------AAAGGAGCAGGAG
AAGGGGA-------------------------------------------------------------------------
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>reverse_3326
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---------------------------------------------CCGCAGCTGATGATACTGGT---------------
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