>input_sequence_55420
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---------------------------------------------------------ATGAGTTTCGAGGAAGTGAGGCG
ACGACGCTTGGAGGCATTGTAAGATTGTTCTTACATTTACCAATGTATATATGTCCAGGTCAAAGAACATCATTTTCTAA
CGGTTTTTTTCCTAACAGGGTGGCTAGTTGTATAAAGAAGTTCAGGACGAAGAAGCCTGAAGGGTACAAGGAGTGGTCAT
GGCGGAAGAAGCCATATTGTGGTTGTGATATATTTCCCGGTGTGCTGACCCAGGGAAACCGAAACGTCTGCCAATTCTGT
GCTGTCACATCAGCTGGGCAAATGGAGCTGAATGCAAAGTTCGCCAAGTGGAGCAAATCAACGTGCAGATTGAGGTTTCA
GTGGGAATCACTTTTGACACGCTTTTTTGAGTTGAATGGATTCATACCAGAATCAGACCATGGAGAAGAGGAGAGGAAAA
TGATGGAGCTAAAGTATATCGTTCAAGATGAGTCTATATATGATTGGGATGATGCGAGTGCCTGGTGTTTCGAGAACCTA
GGTGTGTTGGCTGATGGTGACAAGGCAGTGGTGCAATATCCACTAATGTCAGCCTCCAACATGTATAGGAGATTCTCGAC
AACTACCGATGATAAGATAAAGGAAATCATGGAGAACTCGCGTCTTGTGTCCAAGGATAATACTGATGTCAACGTAGGAA
TTGATGGTTACAAGTATTTCGAGGACCTGACACTGCAGGAGATCTGGGACTACGTGGAAAACGGTAGAGCTGTTGTGGCT
GGGGTTCTTGCCGGGAAGAATTTTGACTATCTTAAACCGGATGAAATTTATGCATGGATTCCGAAGACCAAAGTTGAGAA
TGGAGTGAGGAAATGGTTTGATAAACCAGTCGCTCACGCAATAGTTCTGATGGGAAACGGGAACGCTGGACCTCTGATGC
AACATGAGCAGTATCATCCCTTCCTCAATTCCTATGGAGAGGAATATGCTGGAGGTGGTGTTGGATCTCTGTTTGCCAAG
GCACTATATGGTGGATTCACTCTCTTGGAAGTGAATGACAAGCTAAAGCATGTCAAAACCACAATGTGTGACCTTAATGA
TGATTTTCCTCGTCCAAAGCTGTACGAGGATGGTCCTCCGTCTGCCACCTCCTCTTCACCTCCAGGCATCCATGCCGTCA
CTGCTCGTCCGGCTCCTCATGTCGGGTCCCGTTCACTGCAACGCCTGGGGCGGTCTACTGCTGAGTACGACTCTGCCGTA
CCACTCTACCGCCCGCCTCCACTCCGCAATCGCTTGCCC-----TGCCCAGATGGAGAAAAGTGCGCATAG---------
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>chr7B_1_TraesCS7B01G281600
TCAGAAGCTAGCTTGCTTTGCTGCTCGTGGACATCTCGAGTTCAGGGCGTCTTGGCTTCATCAGTCTGTTAGAATTTCTA
GGTACCCTCCTTGTATGCAGGGGCGAATTTAGCAGCTAGGCTTCGTTAAGTCGTTAGAATTTACGATAAGTGGGGCAAAG
GCAGGAGTTTGGACGATAATCAAGGTGAATGCTTGAGTTAAAATTTGCAATTTCTAAACTTTTTTCTCGCAATCATGCGT
ACCAGTGTTGTCTTGACTC--TTGCTAGCTGATGGCAGATCTGATGATCCGTAAATTTGTGCATCTTGACGGGCTGTGAC
GTCTCTCTATAATTCTAGAATATAGCAGTTGTGTGAATTGGTTATACTTGCATCAGACCCCATAACTTCTGATGTTCGCA
GAAAACAAAATATTGC---TTTATGTCCATGTTATGATGTTAAGAGGGATTTCTCAGTCAAGTGTTTTTTTAACGACTTT
TCTGCCACCAAAACGTATAGAACCTGTACAATTCTCCTACTTTCTTTGGTGTAATTTGATGCTAAAACTTTAGTTCTGTT
AGTTTCATGAAGAAAGTTCCCTGGTGTTAATTTTCTTGTCCAGTAGTTTTTTTTCCGCCTTCTTAAAGCGGTATAATGTT
CTAAATCCCACTGGTAGCTAATCCTCCAGTGGTTGCGTAATCAGTGCAGCTGAGTACATAAATGCAAAAACGAGACACTG
CTCTTTGTATTTTCAGCCCATCAGTACATATTTAATTATCTCGATAATTGGTGTTCCGTGTGATTATTATGGAATCGAAT
TGCTTTTGCATATCACTGTGTCATAATGATCTAATTTTAATGTCACCTTCTGTCAGTCTGCAGGTTGACTTCTTGGCACT
TCTGTGACATTAGAAGCTGAACCGCTG-----------TTAACCACTCATTTGCTACAGCCTGC-GGTGCCTTGATCTAT
TCTGGTTATTAGTCGCACTGAACTGAAGGTCACTCCTTTGCTGCGTCCTCCTCGGCTATGAGTTTCGAGGAAGTGAGGCG
ACGACGCTTGGAGGCATTGTAAGATTGTTCTTACATTTACCAATGTATATATGTCCAGGTCAAAGAACATCATTTTCTAA
CGGTTTTTTTCCTAACAGGGTGGCTAGTTGTATAAAGAAGTTCAGGACGAAGAAGCCTGAAGGGTACAAGGAGTGGTCAT
GGCGGAAGAAGCCATATTGTGGTTGTGATATATTTCCCGGTGTGCTGACCCAGGGAAACCGAAACGTCTGCCAATTCTGT
GCTGTCACATCAGCTGGGCAAATGGAGCTGAATGCAAAGTTCGCCAAGTGGAGCAAATCAACGTGCAGATTGAGGTTTCA
GTGGGAATCACTTTTGACACGCTTTTTTGAGTTGAATGGATTCATACCAGAATCAGACCATGGAGAAGAGGAGAGGAAAA
TGATGGAGCTAAAGTATATCGTTCAAGATGAGTCTATATATGATTGGGATGATGCGAGTGCCTGGTGTTTCGAGAACCTA
GGTGTGTTGGCTGATGGTGACAAGGCAGTGGTGCAATATCCACTAATGTCAGCCTCCAACATGTATAGGAGATTCTCGAC
AACTACCGATGATAAGATAAAGGAAATCATGGAGAACTCGCGTCTTGTGTCCAAGGATAATACTGATGTCAACGTAGGAA
TTGATGGTTACAAGTATTTCGAGGACCTGACACTGCAGGAGATCTGGGACTACGTGGAAAACGGTAGAGCTGTTGTGGCT
GGGGTTCTTGCCGGGAAGAATTTTGACTATCTTAAACCGGATGAAATTTATGCATGGATTCCGAAGACCAAAGTTGAGAA
TGGAGTGAGGAAATGGTTTGATAAACCAGTCGCTCACGCAATAGTTCTGATGGGAAACGGGAACGCTGGACCTCTGATGC
AACATGAGCAGTATCATCCCTTCCTCAATTCCTATGGAGAGGAATATGCTGGAGGTGGTGTTGGATCTCTGTTTGCCAAG
GCACTATATGGTGGATTCACTCTCTTGGAAGTGAATGACAAGCTAAAGCATGTCAAAACCACAATGTGTGACCTTAATGA
TGATTTTCCTCGTCCAAAGCTGTACGAGGATGGTCCTCCGTCTGCCACCTCCTCTTCACCTCCAGGCATCCATGCCGTCA
CTGCTCGTCCGGCTCCTCATGTCGGGTCCCGTTCACTGCAACGCCTGGGGCGGTCTACTGCTGAGTACGACTCTGCCGTA
CCACTCTACCGCCCGCCTCCACTCCGCAATCGCTTGCCC-----TGCCCAGATGGAGAAAAGTGCGCATAGACAGTGTGA
AATGAAGTAATGAGAAGGTCCTGATGTCCTCCTGAGTCGGAGTCTATTTATCCCAGCAGATGTGCCTGCAGGTGAGATCA
GCAATGTTTGCATACTGTTTTGTTCGAAGCAGCCTGTATGATTCTGGCTATTCATTGCAGCAGACTTGCCTACATGTGAG
ATGAGCAATTAGTTTGAATTCTAGCATATTGGCTGATGTTATCACTGTTAACAACATCTTGCATTTCTCTTTATCTCTGT
GTGGTGCATACATGTGAGATTGAATGCTTTGCATAATGTTTTATTCGAAGCAAGCTTTAGCATTTTGGCACTTGAAGATC
AATGTTTTATTTGAAGCAAGCTTTAGCATCAGTTGAAAACCTGATGGATGGTTAGCTAAATACAAGCTTCTCACTTTAGC
TCTGTCCCCATGTTTAGCATCACTTGAAAACCTGATGGTTAGCTAAATACAAGCTTCTCGCTTTAGCTCTTTCCCATGTT
TATTTTATCAGTTGAGCAGATATTAGCTTAGAATGTTATATTGCCTTGACCTAATGTAGTGAGTGATACAGAAGTGTACC
AATTGTGTGTCTAAAAGTAGTTTTCATCATCTGCTATCCAATCATGGAAGAGGAAAGGTTTACCTCCTTGGTCTGGATGC
ACATATTTTGTGTTGCATGCCATGTGTATATATATGTTTATAATGTCGATGAGATGAGCTAGTTAGAAGCTGCAGCAGCA
GAGACTGTTGAGGTATGAAATTAGCGACGCGAGTAGTCTAGACTTGCCCTCAGTGGCTAATATTTCCTGGAGTTGAGGTA
TGAAGATTTTCCTTGTCGATTAGGAAGCCTATGGATGAAATAGACCAACAGACTGAAGACATGAAGCAGATATAAGATGC
TTTGTCAGCAGCAGCTGCTTCTGACGAGGGAGAGAACAGAAAAGCGACGTCACTTGTCTGCTTCCTCAGAGTTTCCCATC
CCAACACAAGAGGGCGACACCGTGTTTTTCA
>chr1B_1
TCAGAAGCTAGCTTGCCTTGCTGCTCCTGGACATCTTGAGTTCCGGCCGTCTTGGCTTCATCAGTCTGTTAGAATTTCCA
GGTACCCTCCTTGTATGCAGGGGCCAATTTAGCAGCTAGGCTTCGTTAAGTCGTTAGAATTTACGATAAGTGGGGCAAAG
GCAGGAGTTTGGACGATAATCAAGGTGAATGCTTGAGTTAAAATTGGCAATTTCTAAACTTTTTTCTTGCAATCATGCCT
ACCAGTGTTGTGTTGACTCTATTGCTAGCTGATGTCAGATCTGATTATCCGCAAATATGTGCATCTTGACGGGCTGCGAC
GTGTCCCTGTGATTCTAGAATATAGCAGTTGTGTGAATTGGTTATACTTGCATCAGACCCCATAACTTCTGATGTTCGCA
GAAAACATCAAAATATTGGTTTATTTCCATCTTATGACGTTAAGAGGGATTTCTCAGTCA---GTGTTTTTACCGACTTT
TCTGCCACCAAAATGTATAGAATCTGTACAATTCTCCTACTTTCTTTGGTGTAATTTGATGCTAAAACCTCAGTCCTGTT
AGTTTCGTGGAGAAAGTTCCCTGGTGTTAATTTTCTTGTCCAGTAGA-TTTTTTTCGCCTTCTTAAAGCGATATAATGTT
CTAAATCCCACTGGTAGCTAATCCTCCAGTGGTTGCGTAATCAGTGCAGCTGAGTACATAAATGCAAAAACGAGACACCG
CTCTTTG-ATTTTCAGCCCATCAGTACAGATTTAATTATCTTGATAATTGGTGTTCCGTGTGATTATTATGGAATCAAAT
TGCTTTTGCTTATCAGTGTGTCGTAATGATCTAATTTTAATGTCACCTTCTGTCAGTCTGCAGTTTGACTTCTCGGCACT
TCTGTGGCATTAGAAGCTGAACCGTCGTTGGTGCTCCTTTAACCACTCATCTGCTACAGCTTTGTGGTGCCTTGATCTCT
TCTGGTTATCAGTCGCACTGAACTGAACGGTCAC----------------------------------------------
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-------------------------------------------------TCCTAGGATAATACTGTCATCAACCTAGGAA
TTGATGGTTACAAGTATTTCGAGGACCTGACAGAGCAGGAGATTTGGAACTACGTGGAAAACGGTAGAGCTGTTGTGGCT
GGGGTTCT------------------------------------------------------------------------
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-------ATGGTGGATTCACGCTCTTGGAAGTGAATGACAAGCTAAAGCATGTCTCAACCACAATGCGCGACCTTAATGA
TGATTTTCCTCGTCCAAAGCTGCACGAGGATGGTCCTCCGTCTCCCCCCTCCTCTTCACCTCCAGGCATCCATGCCGTCA
CCGCTCCTCTGGCTCCTCACGTCGGGTCCCCTTCACTGCGATGCCTGGAGCTGTCTACTGCTGAGTACGACTCAGCCGTA
CCAGTCTACCGCCCGCCTCCACTCCGCAATCGCCTGCCCCCTGCTGCCCAGATGAAGAAAAATGCGCATAGACAGTGTGA
AATGAAGTTATGAGAAGGTCCTGATGTCCAG-TGAGTCGGAGTCTATTTATCCCAGCAGATGTGCCTGCAGGTGAGATCA
GCAATGTTTGCATACTGTTTTGTTCGAAGCAGCCTGTATGATTCTGGCTATTCATCGCAGCAGACTTGCCTACATGTGAG
ATGAGCAATTAGTTTGAATTCTAGCATATTGGCTGATGTTATCACTGTTAACAACATCTTGCATTTCTCTTTATCTCTGT
GTGATGCATACATGTGAGATTGAATACTTTGCATAATGTTTAATTCGAAGCAAGCTTTAGCATTTTGGCACTTGAAGATC
AATGTTTTATTTGAAGCAAGCTTTAGCATCAGTTGAAAACCTGATGGATGGTTAGCTAAATAAAAGCTTCTCACTTTAGC
TCTGTCCC-ATGTTTAGCATCACTTGAAAACCTGATGGTTAGCTAAATACAAGCT-------------------------
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>SNPs
----------------S---------S---------S------S--S-------------------------------S-
------------------------S-------------------------------------------------------
---------------------------------------------S---------------------S----------S-
-----------S----------------------S----------S-----S----S-------------------S---
--S--S--S-S---------------------------------------------------------------------
-------SS-S-S-SS--------S-----S------S----------------------SSS--S------S-------
-------------S--------S---------------------------------------------S-S---S-----
------S--S------------------------------------SS------S---------------S---------
------------------------------------------------------------------------------S-
-------S--------------------S------------S----------------------------------S---
---------S-----S------S----------------------------------------S---------S------
------S-----------------SS------------------------S---------S-SS--------------S-
---------S-----------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S------------SSS-----S------
--------------------------------SS---------S---S--------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------------S---------------------------------SS----------S-S-----------
----------------------S--------------------S--S---------------------------------
-S----S--S---------S----------S--------S-S------S--S---------------------S------
---S-----------------------------S--------------------S------S------------------
--------S--------------------SSS------------------------------------------------
-------------------------------------------------------S------------------------
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---S---------------------S---------------S--------------------------------------
--------------------------------------------------------------S-----------------
--------S----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_27
-------CTAGCTTGCTTTGCTGCTCG-----------------------------------------------------
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>reverse_1496
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-------------------------------------------------------GAGTGCCTGGTGTTTCGAGA-----
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>forward_1250
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------------------------------TATTTCCCGGTGTGCTGACC------------------------------
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>reverse_3035
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--------------------------------------------------------------------------GCAGCA
GAGACTGTTGAGGT------------------------------------------------------------------
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