>input_sequence_55407
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----CCCACCCCCGCCGCAGCCGCA-------------------------------GCAGCAGCCGTAGCCCGATGGAAG
TCGACAGAGCCCCGACCGCTGCCGCGGCAGGAGGATCCTCCTCTGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAG
AAGCCGCGGTTCGACGCCCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCGCCGCA
CCGCTTTGCGCCGCTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGA
ACCTCAAGGTTGGTAACCCGGCTGCGTTTTCTAATGTCCCGTTGCTGCTTCTCTGAATAGTAAGAGCAAGTCCGAATTCG
TGTGACCTGT----GTTCCCTTCCTCTCATTTAAAACGCGTCATCCGGTCAGTAATTGCGGAGAAAATTATTGGTCTGCT
GTTGATCATCGTTTCTTGTACTGTTTGGTTCAAGCACTTGTGTATTATGGAGAAAATCCGCACTAGCTTGTAGCACCTGT
GGTTAA--------------------------------------------------------------------------
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----------TGGGGGACAACTTGTAAGATATCTCTGAATGTTTAGCATTTAGCTGTCTCCTTTGTAGCAATTTCATTAG
TCTGTTTTTTTTCATCAACAGGCAAAAAGGGTTGAGCTGAAAACAAGGCATGATACACCAGATGTGAGCAACCTTCAGAA
GTGTGCGGACTTCGTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCCGTTGCCTTGCTTCGTCTTGATGACCTGT
ATGTGGACTCCTTCGAGATCAAGGATGTGAAGACACTTCGAGGGGAGCATCTGTCGCGTGCCATTGGCCGCCTATCAGGG
AAAGGAGGCAAGACCAAGTATGCCATTGAGAACTCTACCAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACT
TGGATCCTTTGTTAACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGAAAGGTCTATT
CGAAGCTAAGGGCTGTATCTGCTAGGATGGCAGAAAGGTATTAGTTGAGTCTGGGTCACATTATATAGCTGCAGTTTTGG
CCTTGTAAGGTGTTGTATCCGCTGATTTGTGTCCCTGTGCTATGCATTGTCTTGATATGAAGAACAACTTGGAAGTGCCG
AGAGATCTGTGGTGATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGGGAAAATGCTGTTCTGATACATGT---TATAT
GTTTGCTTCGACTACTATTTATATATGCCAAACACTATTGTGTAAGTTGTGTGGT-------------------------
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>chr3B_1_TraesCS3B01G179200
GTTCTGCTAGTTCTTT-TTTGCTATAAGCCCATCAGGCAACCCTTTTATCCTTGCCCTCACCGGCAGTTTATTCAGCTTA
TACTCAGCCACATCAGTAAAGCCATCGTACTCTTGAAGGATCACTGGAGCATTTCGAAAAATTCATGGCCCTCCTTCCAT
CACCCTCTTCCACTCTCCAAGGCAATGACACTGAACTAGGAACAAGTTCAGGCCCTTCACGTTAATTGTCACACCCTGTG
CAGACGCCCACACGTTCCTCATCTGCCTGAGCAGCGCAGCATGGCTGAAGGGTTTGGTAGTGTGAACCCTAAACAGACTT
AGCCAGCGCACTCCTTCAATCAGGTCTTCAACCTCGCCCGACAGGTCCAGATCGTCCTCCTCCTCCCCATGTAGATGCAT
ACCTGTGAATTTGTCCTCCAGATCTGGTTCTGGGCCATAGCCCCAATCTTCATCTTCATCCTCCCCGACTGCCGCGCCAA
GATCTGCTCC----------------------------------------------------------------------
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--------------------------------------------------CGGCTCCACCGGCGCCCTGCCATCTCCAAC
TCCATCCGCCAACTGGCTTCCCTCTCCTATCTCCATCTCCTTCCCTGCATCATCTACTTCCTTCCCTCTACTAACTCTAC
CCCCCAGCTCCATCGCCAAAGGCGTCGGTCCTGCCATGCAGCCTGGCCTGCAAAACTCTCTCGATTGATAGGACTTCAGG
CCGCCGAACGGATCTGGCCACCGTGAAGGATTGACGTGGACTCCGCCATCACCGCTGGAGGTCAGGTTGGAACCCTAGAT
GGGGATAACTCTTGTTTCTACAAAAAAAAAAAAAACAGGCGTTAGTTT-CTGTCGCTAGCTCTGACTGTGCTCGCTGGGC
CAGGCCCATGTCACGCATGGGACGCGAGCGCACCATCTCCCTTTTCGTTCGTCTTGTGCTGGCCCAAACT-AGCCTTCCA
CAGCCCAATATAAGCCTCTCCGTTCCAAGGTGTC-CACTCCTCTCGGTCCCAAAACCCTAGCAGCCTCTCCCACCCCGCG
CCATCCCACCCCCGCCGCAGCCGCA-------------------------------GCAGCAGCCGTAGCCCGATGGAAG
TCGACAGAGCCCCGACCGCTGCCGCGGCAGGAGGATCCTCCTCTGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAG
AAGCCGCGGTTCGACGCCCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCGCCGCA
CCGCTTTGCGCCGCTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGA
ACCTCAAGGTTGGTAACCCGGCTGCGTTTTCTAATGTCCCGTTGCTGCTTCTCTGAATAGTAAGAGCAAGTCCGAATTCG
TGTGACCTGT----GTTCCCTTCCTCTCATTTAAAACGCGTCATCCGGTCAGTAATTGCGGAGAAAATTATTGGTCTGCT
GTTGATCATCGTTTCTTGTACTGTTTGGTTCAAGCACTTGTGTATTATGGAGAAAATCCGCACTAGCTTGTAGCACCTGT
GGTTAA--------------------------------------------------------------------------
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----------TGGGGGACAACTTGTAAGATATCTCTGAATGTTTAGCATTTAGCTGTCTCCTTTGTAGCAATTTCATTAG
TCTGTTTTTTTTCATCAACAGGCAAAAAGGGTTGAGCTGAAAACAAGGCATGATACACCAGATGTGAGCAACCTTCAGAA
GTGTGCGGACTTCGTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCCGTTGCCTTGCTTCGTCTTGATGACCTGT
ATGTGGACTCCTTCGAGATCAAGGATGTGAAGACACTTCGAGGGGAGCATCTGTCGCGTGCCATTGGCCGCCTATCAGGG
AAAGGAGGCAAGACCAAGTATGCCATTGAGAACTCTACCAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACT
TGGATCCTTTGTTAACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGAAAGGTCTATT
CGAAGCTAAGGGCTGTATCTGCTAGGATGGCAGAAAGGTATTAGTTGAGTCTGGGTCACATTATATAGCTGCAGTTTTGG
CCTTGTAAGGTGTTGTATCCGCTGATTTGTGTCCCTGTGCTATGCATTGTCTTGATATGAAGAACAACTTGGAAGTGCCG
AGAGATCTGTGGTGATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGGGAAAATGCTGTTCTGATACATGT---TATAT
GTTTGCTTCGACTACTATTTATATATGCCAAACACTATTGTGTAAGTTGTGTGGTCTCTTTTTCTTCGA-GTGTGTATTT
TATACTCTATA--GCATGGCTATGGATGTGGAGAATGATCAAGTTAACCTAGAATCTTGAATTGTCAGATTTGGTTGA-T
TTACCCTTAGAAATGGACCACAACAATGGTTGTGAATCCTACAGAAAGTTTTGCATTTCTCTTGAGCAGTATGGCGAGCC
CTTCGCACAGGAGGCTCACCCAAAACATATAGCATTGGTACAGTACTTTATTGCCATGTAAATTCATCTTAGCTTGGCTA
TGTTTGTTTAGATGCCATTGTTTTTCTCTTTGGTGCTTTGTTCTTTTAATCTTGGATTACCATCCTGTGCATGCACTGCG
GTGCTTCTGCAGAGTTTGAGCTGGATAACAGTGCTCAA------------------------------------------
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------------------------TCTCCTGCCTCCAATGGTCCTTTACACTACAGTGACACCTATAACCAATCTGTCTC
TCTTACGTCGTCACAGTCAGTAAGAG------TTAGGATCAGACTTTGGAGAAGGTAAACATGTAGAG------------
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-------------------------------------------------------------------------------C
ATAATTGGTTTGCTACCAACATTTGGCATTGCCAATATTTGGTAAGCCAACATTTGGCAAAAACAAAAGTTGCCAACTTT
TGGCAACTTTTTGTGAGATTGGCAACAAGAATTGGCAAGCAACCAATCTCTAGCCAATATTTGTAGTTCCTCAGCTACTA
TTCATACATATACCATGATTTTAGTTCCTCAAATTATAATTATAATTTCAGCTTATCTGTAGAAACTATTGAGAAAAGAA
TTATCTTAGTCTTCCACTATATTTTT------------------------------------------------------
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-------------------------------------------------------------------------------C
TTAGTTTTGTTGCTATA---------------------------------------------------------------
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----------------------------------------------------------------AATATTTATTGCAATT
TAGGTTTATAGATGTTGTAAAGTGGTGTGCATCAC---------------------------------------------
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----------------------------------------GTGGTACCAAGAGAAATTGTTTCTTGGTTGTTTGATGAGT
TCTCCAACTGTTTTATTTGACACCAGAAATCTTAATTCTAATTGATATGTTTAATCTGTGTAACCATTTGTTACGTCTTA
TAGCAATTGGAACCCTTTGGGGAAGATATGATATGTTTAATCTGTGT
>chr1D_1
GTTCTGCTAGTTCTTTTTTTGCTGTGAGCCCATCAGGCAGCCCTTTTATCCTTGCCCACACCGGCAGTTTATTCAGCTTA
TACTCCGCCACATCAGTAAAGCCGTCATACTCTTGAAGGATCACTGGAGCGTTGCGAAAAACCCATGGCCCTCCTTCCAT
CACCCTCTTCCAATCTCCAAGGCAATGACACTGAACCAGGAACAAGTTCGGGCCCTTCACGTTAATTGTCACACCTTGTG
CAGACGCCCACGCGTTCTT-ATCTGCCTGAGCAGCGCGACATGGCTGAAGGGTTTGGTAGTGTGAACCCTAAACAGACTT
AGCCAGCGCACTCCTTCAATCAAGTCTTCAACCTCGCCCGACAGGTCCAGATCGTCCTGCTCCTCCCCATGCAGATGCAT
ACCTGCGAATTTGTCCTCCAGATCTGGTTCTGGGCCATAGCCCCAATCCTCATCTTCATCCTCCCTGACTGCCGCGCCAA
GATCTGCTCT----------------------------------------------------------------------
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--------------------------------------------------CGGCTCCACCGGCACCCTGCCATCTCCAAC
TCCATCCGCCACCTGGCTACCCTCTCCTATCTCCATCTTTTTCCTTGCATCGTCTACTTCCTTCCATGTACTAACTCTAC
CTCCCATCTCCATCGCAAGAGGCATCGGTCCCGCCATGCAGCCTGGCCTGCAAACCTTTCTCGATTGGTAGGACTTCAAG
CCGCCGAACGGATCCGGCAACCTTGAAGGATTAACGTGGACTCCGCCGTCGCCGCCGGAGGTCAGGTTGGAACCC-----
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>chr1A_1
GTTCTGCATGTTCTTTCTTTGCTATAAGCCCATCAGGCAGCCCTTTTATCCTTGCCCACACCGGTAATTTATTCAGCTTA
TACTCTGCCATATCAGTAAAGCCATCATACTCTTGAAGGATCACTGGAGCGTTGCAGAAGATCCATGGCCCTCCTTCCAT
CACCCTCTTCCAATCTCCAAGGCAGTGACATTGAACCAGGAACAAGTTCGGGCCCTTCACGTTAATTATCACACCCTGTG
CAGACGCCCACGCGTTCCTCATCTGCCTGAGCAGCGCGACATGGCTGAAGGGTTTGGTGGTGTGAACCCTAAAGAGACTC
AGCCATCACACTCCTTCAATCAAGTCTTCTACCTCACCCGACAGGTGCATATCGTCCTCCTCCTCCCCATGCAGATGCAT
ACCTGCAAATTTGTCTTCCAGATCTGGTTCAGGGCCATAGGCCCAATCCTCATCTTCATCCTCCCCGACTACCGCGCCAA
CATCTGCTCC----------------------------------------------------------------------
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--------------------------------------------------CGGCTCCTCCGGCGCCCTACCATCTCCAAC
TCCATCCATCACCCGCCTACCCTCCCTTGTCTCCATCTTCTTCCTTGCATCATCTACTTCCTTCCCTATACTAACTCTAC
CTCCCGTCTCCAACGCTAGAGGCGTCGGTCCCTCCATGCAGCTTGGCCTGCAAAAC-CTCTC----GGTAGGACTTCAAG
CCGCCGAACGGATCCGGCAAACTTGAAGGATTAACGTGGACTCCGCCGTCGCCGCCGGAGGTCAGGTTGGAACCCTAGAT
GGGGA---------------------------------------------------------------------------
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>chr2A_1
GTTCTGCAAGTTCTTTCTTTGCTGTAAGCCCATCAGGCAGCCCTTTTATCCTTGCCCACACCGGTAATTTATTCAGCTTA
TACTCTGCCACGTCAGTAAAGCCATCATACTCTTGAAGGATCACTGGAGCGTTGCGGAAGATCCATGGCCCTCCTTCCAT
CAACCTCTTCCAATCTCCAAGGCAGTGACATTGAACCAGGAACAAGTTCGGGCCCTTCACGTTAATTGTCACACCCTGTG
CAGACGCCCACGCGTTCCTCATCTGCCTGAGCAGCGCGACATGGCTGAAGGGTTTGGTGGTGTGTACCCTAAAGAGACTC
AGCCAGCGCACTCCTTCAATCAAGTCTTCTACCTCGCCCGACAGGTCCAGATCATCCTCCTCCTCCCCATGCAGATGCAT
ACCTGCAAATTTGTCTTCCAGATCTGGTTCAGGGCCATAGGCCCACTCCTCATCTTCATCCTGCCCGACTGCCGCGCCAA
CATCTGCTCC----------------------------------------------------------------------
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--------------------------------------------------CGGCTCCTCCAGCGCCCTAACATCTCCAAC
TCCATCCGTCACCCGGCTACCCTCCCCTGTCTCCATCTTCTTCCTTGCATCGACTACTTCCTTCCCTGTGCTCACTCTAC
CTCCCGTCCCCAACGCTAGAGGCGTCGGTCCCTCCATGCAGCTTGGCTTGCAAAAC-CTCTCGATTGGTAGGACTTCAAG
TCGCCGAACGGATCCGGCAGACTTGAAGGATTAACGTGGACTCCGCCGTCGCCGCCGGAGGTCAGGTTGGAACCCTAGAT
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>chr1B_2
-TTCCGCTAGTTCTTTTTTTGCTATAAGCCCATCAGGCAGCCCTTTTATCCTTGCCCACGCCGGTAGTTCATTCAGCTTA
TACTCAGCCACATCGGTAAAGCCATCGTACTCTTTAAGGATCACTGGAGCATTGCGAAAAATCCATGGCCCTCCTTCCAT
CACCCTCTTCCAATCTCCAAGATAATGACACTGAACCAGGAACAAGTTCGGGCCCTTCACATTGATTGTCACGACCTGTG
CAGATGCCCACGCGTTCCTCATCTGCCTGAGCAGCGCGACATGGCTGAAGGGTTTGGTGGTGTGAACCCTAAAAATACTT
AGCCAATGCACTCCTTCAATCAGGTCTTCAACCTCGCCTGACAAGTCCAGATCGTCCTCCTCCTCCCCATGCAGATGCAT
AACTGCGAATTTGTCCTCCAGATCTGGTTCTGGGCCATAGCCCCAATCTTCATCTTCATCCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCTCCACCAGCGCCCTGCCATCTCCATC
TCCATCCGCCAACTGGCTTCCCTCTCCTATCTCCATTTCCTTCCCTGCGTCGTCTACTTCCTTCCCTCCACTAACTCTAA
CCCCCGGCTCCATCGCCAAAGGCGTCGGTCCGGCCATGGAGCCTGGCTTGCAAACT-CTCTCCATTGATAGGACTTCATG
CCGCCGAACAAATCCGGCCACCGTGAAGGATTGACGTGGACTCCGCCGTCGCGGACGAAGGTCAGGTTGGAACCCTAGAT
GGGGAT--------------------------------------------------------------------------
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>chr3A_779
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-------------------ACAAAAAAACAAAAAACATGCGTGAGTTTTCTGTCGCTAGCTCTGACTGTGCTCGCTGGGC
CAGGCCCATGTCGCACAGGGGAAGGAACAGTCCA--------------TCGTCTTGTGCTGGCCCAAACT---CCTTCCA
CAGCCCAATATAAGCCTCTCCGTTCCGAAGTTT-TCACTCCTCTCGGTCCCAAAACCCTAGCAGCCTC--CCACCCGGCG
CCATCCCACCCCCGCCGCAGCCTCCTACCCGGCGCCATCGCACCCCCGCCGCAGCCGCATCAGCCGTAGCCCGATGGAAG
TCGACAGAGCCCCGGCCGCTGCCGCGGGAGGAGGATCCTCCTCTGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAG
AAGCCGCGGTTCGACGCGCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCGCCGCA
CCGCTTCGCGCCGCTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGA
ACCTCAAGGTTGGTGACCCGGCTCAGTTTTCTAGTCTGTCGTTGCAGCGTCCTAATAGTTAGGG---------GAAGTCG
TGTGACCTGTGTTCGTTCTCTCCCTGTCATTTAAAGCACGCCGTTCGGTGAGTAATTATGGAGAAATTTGTTGGTCTGTT
GATGATCTTATA-TCCTGTACGGTTTGGTTCAAGCACTTGTATATCATGGGGAAAATCCGCACTAGCTTAAAGCACCTGT
GGTTAGACATTCGGGTCAAAAAGACACGTGATGTATGTCATGTTCCTTCAGTTCACTGTACTAGCACTTTTATCAGGATA
AAACATGTTCTGTTTTCAAACTTCAGTGTTCAGTATTTTAATTCCCTGTGCACTTGACCTGAAAAAATGGGAGGTAGTCA
TGATAGCCATGGTGATAAAATAGACTATTTTTCGAACTTGATTGTTCAGTGTTTTAGCAGTATGTATTGAATCTGATCGA
TTAGCTTTGATTAGAGGATTCTTCATGAATTCGATCAATTGGATAAACGCTAGCAGTATGTCTTGAAGCAAGTAAACGTC
TGCTGGCTATCCTGATTATTTGCATATACATATTTATTTCAGTTCATCATGATGTGAAGCTACTGATTTGAATTATTGCC
ACCAACTGAGCACCTGACATGATCAATTAGCTTAGTGGTGTTCTTATTTTTGTGGGAAAGCATAGTGTTCTAGAAGAATA
CAGATACACGTGACTCAATTGGTTTGCCTTGTGGCCGGTGTTTCTCTCATGGTTTTTGGGTCTGCAGGGAGTTCTTCCAG
TGCTTATTATTGGGGCAGAACTTGTCAGATA--TCTGAATGTTAAGCATTTCTCTGTCTCCTTTGCAGCAATTTCATTAG
TCTGTTTTGTTTTTT--ACAGGCAAAAAGGGTCGAGCTGAAGACGAGGCATGATACACCAGATGTGAGCAACCTTCAGAA
GTGCGCGGACTTCGTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCCGTTGCCTTGCTTCGTCTTGATGACCTGT
ATGTGGACTCCTTTGAGATCAAGGATGTGAAGACACTCAGAGGGGAGCATCTGTCACGTGCCATTGGGCGCCTGTCAGGG
AAAGGAGGCAAGACCAAGTATGCCATCGAGAACTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACT
TGGATCCTTTGTTAACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGCAAGGTCTATT
CTAAGCTTAGGGCTGTATCTGCTAGGTTGGCAGAAAGGTATTAGTTGAGTCTGGGTCACATTATATAGCTGCAGTTTTGG
CCTTGTAAGGTGTTGTATCCGCTGATTTGTGTCCCTGTGCTATGCATTGTCTTGATACGAAGAACAACTTCGAAGTGCCG
AGAGATCTGTGGTGATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGAGAAAATGCTGTTCTGATACACGTTACTATAT
GTTTGCTTCGACTACTATTTATATATGCCAAATACTGTTGTGTAACTTGTGTTGTCTCTTTTTCTTCAGTGTGTGTATTT
TATACTCTATA--ACATGGCTATGGATGTGGAGAATGATCAAGTTAACCTAGAATCTTGAATTGTCAAATTTGGTCGA-T
TTACCCTTACAAATTGACCACAATAATGGTTGTGAATCCTACAGAAAGTTCTGCATTGCTCTTGAGCAGTATGGCGAGCC
CTTCTCACAGGAGGCTCACCCAAAACATATAGCATTGGTGCAGTACTTTATTGCCATGTAAATCCATCTTAGCTTGGCTA
TGTTTCTTTGGACGCCATAGTTTCTTTCTTTGGTGCTTTGTTAATCCAATCTTGGATTACCATCCTGTGCGTGCGCTACG
GTGCTTCTGCAGAGTTTGAGCTGGATAACAGTTCTCAAGGCCTGTTCGGAATTTCACCAGCTCCACGAAATTTCAGGAGT
TGTGGAGTTAGGAAATAGCTGCTTCGCAGTTTTCAACTGCAACTCCACCAACTCCGGGAAATTTCAGGAGTTGTGGAGTG
GAGGTTCTCCGAACAGGGCCTCAATCTCCTGCCTCCAATGGTCCTTTACACTACAGCGACACCTATAACCAATCCGTCGC
ACTTATGTCGTCACAGTCAGTATAAGTTACCCTTAGGATCAGACTTTGGAGAAGGTAAACATGTAGTCTACATATGGTTA
TCCTTATGATAGC-TATGTATTATTACTGTCTCAAGATCGGACAATTTAACTGCAGC--------------------ACA
TGGGCAGTGGAGAGCCATAAAGGGTTTGGTCTGCATCTCCTGCTGCAGTATGTTATCCCTGTAGTATCTGCTACATGAAG
TTTATAGAAGGATTTACATATTTGGTATATGCAAATGTTTGGACAAGATGCAGAAGATGTGATATGCATCCCTTCCGGCA
ACACCATGTAAT--------------------------------------------------------------------
-----------CTCTGCTACAGCGAAGGTACCTACTGGTACTCTGTTCTAATACCTATTTTCTGATTCTTATTCC-----
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----------------------TTGGGCTTAGAAATCGTTAACTGGGCAACATTCTA-----------------------
---------------------------------------------------------------------CTCAGCCACG-
------CATAGACCATGATTTTAGTTCCTCAAATTACAATTAAAATTTCAGCTTATCTGTAGAAACTATTGAGAAAAGAA
TTATCTTAGTCTTCCACTATATTTTT------------------------------------------------------
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-------------------------------------------------------------------------------C
TTAGTTTTGTTGCTATAT--------------------------------------------------------------
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-----------------------------------------------------------------ATATTTATTGCAATT
TAGGTTTGTAGATTTTGTAAAGTGGTGTGCATCAT---------------------------------------------
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----------------------------------------GTGGTACCA-GAGAAATTGTTTCTTGGTCGTTTGATGAGT
TCTCCAACTGTTTTATTTGACACCACAAATCTCAATTCCAATTGATATGTTTAATCTGTGTAACCATTCGTTATGTCTTT
AGC--ATTGGAACCCTTTGGGGAAGATATGATAT-------------
>chr3D_887
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------------------------------------------------TCGCCTTGTAGTGGCCCAAACACAGCCTTCCA
CAGCCCAATATAAGCCTCTCCGTTCCAAAGTTTTTCACTCCTCTCGGTCCCAAAACCCTAGCAGCCTC--CCACCCGGCG
CCATCCCACCCCCGCCGCAGCCTCCTACCCGGCGCCATCCCACCCCCGCCGCAGCCGCAGCAACCGTAGCCCGATGGAAG
TCGACAGAGCCCCGACCGCTGCCGCGGGAGGAGGATCCTCCTCCGGCGCGATGGCGGTGGACGCGGCCGGCGGCGTGGAG
AAGCCGCGGTTCGACGCGCTGATGCCAAGCGAGATGAGCGGCGGGAGGCCACAGTACCGCAAGGTCCAGGTGCCTCCGCA
CCGCTTTGCGCCGCTGAAGAAGGCGTGGCTGGAGATCTACACCCCCGTCTACGAGCACATGAAGGTCGACATCCGCATGA
ACCTCAAGGTTGGTAACCCGGCTCGGTTTTCTAATGTCTCGTTGCAGCGTCCTAATAGTTAGAG---------GAAGTCG
TGTGACCTGT----GTTCTCTCCCTGTCATTTAAAGCACGCCGTTTGGTGAGTAATTATGGAGAAAATTGTTGGTCTGTT
GATGATCT--TA-TCCTGTACGGTTTGGTTCAAGCACTTGTGTATCATGGAGAAAATCCGGACTAGCTT-----------
--TTAAACATTTAGGTCAAAAATACACCCGATGCATGCCATGTTCCTTCAATTCACTGTACTAGCACTTTTATCAGGATA
AAGCATATTCTGTTTTCAAACTTCAGTGTTCAGTATTTTAATTCCCTGTGCACTTGACCTGAAAAAATGGGAGGTA-TCA
TGATAGTCATGGTGATAAAGTAGACTATTTTTCGAACTTAATTGTTCAGTGTGTTAGCAGTATGTATTGAATCTGATCGA
TTAGCTTTGATTAGAGGATTCTTCATGAATTCGATCGATTGGATAAACGCTAGCAGTATGTCTTGAAGCAAGTAAACGTC
TGCTGCCTATCCTGATTATTTGCATATACATATTTATTTCAGTTCATCATGAT--GAAGCTACTGATTCGTATTATTGCC
ACCAACTGAGCACTTGACCTGATTAATTAGCTTAGTGGTGTTCTTATTTTTGTGGGAAAGCATAGTGTTCTAGAAGAATA
CAGATACACGTGAGTCAATTGGTTTGCCTTGTGGCTGGTGTTTCTCTCATGGTTTTTGGGTCTGCAGGGAGTTCTTCCGG
TGCTTATTATTGAGGCAGAACTTGTCAGATA--TCTGAATGTTAAGCATTTTTCTGTCTCCTTTGCAGCAATTTCATTAG
TCTGTTTTGTTTTTT--ACAGGCAAAAAGGGTCGAGCTGAAGACAAGGCATGATACACCAGATGTGAGCAACCTTCAGAA
GTGCGCGGACTTCGTGCATGCTTTTATGCTTGGATTTGACATTGCCGATGCTGTTGCCTTGCTTCGTCTTGATGACCTGT
ATGTGGACTCCTTCGAGATCAAGGATGTGAAGACACTCAGAGGGGAGCATCTGTCGCGTGCCATTGGGCGCCTATCAGGG
AAAGGAGGCAAGACCAAGTATGCCATCGAGAACTCTACCAGGACTCGCATAGTTATCGCTGATACGAAGATCCACATACT
CGGATCCTTTGTTAACATCAAGGTTGCCAGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCCGGCAAGGTCTATT
CTAAGCTTAGGGCTGTATCTGCTAGGTTGGCAGAAAGGTATTAGTTGAGTCTCGGTCACATTATATAGCTGCAGTTTTGG
CCTTGTAAGGTGTTGTATCCGCTGATTTGTGTCACTGTGCTATGCATTGTCTTGATACGAAGAACAACTTGGATGTGCCG
AGAGATCTGTGGTGATATTCCTTGTGTTCTGTTCTCGGCTTTTTCTTGAGAAAATGCTGTTCTGATACATGT---TATAT
GTTTGCTTCGACTACTCGTTCTATATGCCACATACTATTGTGTAAGCTGTGTTGTCTCTTTTTCTTTGAC---TGTATTT
TATACTCTATATAACATGGCTGTGGATGTGGGGAATGATAAAGTTAACCTAGAATGTTGAATTGTCAGATTTGGTCCATT
TTACCCTTACAAATCGACCACAGTAATGGTTGTGAATCGTACAGAAACTTTTGCATTTCTCTGGATCAGTATGGCGAGCC
CTTCACACAGGAGGCTCACCCAAAACATATAGCATTGGTACAGTAATTTATTGCCATGTAAATTCATCTTAGCTTGGCTA
TGTTTGTTTAGATGCCATAGTTTCTTTCTTTGGTGCTTCGTTCTTCTAATCTTGGATTACCATCCTGTGCATGCGCTGCG
GTGCTTCTGCAGAGTTTGAGCTGGATAACAGTGCTCAA------------------------------------------
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------------------------TCTCCTGCCTCCAATGGTCCTT----CTACAGCGACACCTATGACCAATCTGTCTC
TCTTACGTCGTCACAGTCAGTAAGAG------TTAGGATCAGACTTTAGA--AGGTAAACATGTAGTCTACATATGGTTA
TCCTTATGATAGCTTATATATTATTATTGTCTAAAGATCCGACAATTTAACTGCAATCCCTATGGTTGATACAGCGGACA
TGGGAAGCGGAGTGCCATAAAGGGTTTGGTCTGCTTCTCCTGCTACAGCATGTTATCCCTGTAGTAGCTGCTACATGAAG
TTTATAGAAGGATTTACATATTTGGTATATGTAAATGTTGGGACAAGATGCAGAAGATGTGATATGCATCCCTTCTGGCA
ACACCATGTAAT--------------------------------------------------------------------
-----------CTCTGCTATAGCGAAGGTACCTGCTGGTACTCTGTTCTTATACCTATTTTCTGATTCCTATTCG-----
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----------------------TTGGGCTTAGAAATCGTTAACTGGGCAACATTCTA-----------------------
---------------------------------------------------------------------CTCAGCTACTA
TTCATACATAGACCATGATTTTAGGTCCTCAAATTATAATTATAATTTCAGCTTATCTGTAGAAACTATTGAGAAAAGAA
TTATCTTAGTCTTCCACTATATTTTATTTAAAAGCAGTGTTAGTTACCACTACCTTCTCTGACCTCCACGTGTCCCTCTC
CCCCATCCCTCAAGGCGTGGCATAAAGTCAACCGGGTAAATGGATACTGTTAGCGGGTGCATGCAATTTAGTAGGCAGAA
ACTAGTTAAGTTTTTATAATTTAATAATCCGGCAAGCCCGTGATAGGCTGTTGCAACAGACTCCTTAATTCTTGGGTGCG
TACGATAGTATCATGAGATAAGCATGTGAACATGATTATTCTTGATAGGTAAATGGTAAAAAAATATCTACAGTATATAC
TTAGTTTTGTTTTCTCTTGAACAAGTAGTTTTTGTTGAAAATAGGTAGTATGGGAACATCTAACTCTTTTTGGATTCTTC
CAATATAGTTGTACGAAATATCTTGCCTTTTTAGAACCGCATAGAGTATATTCATGTCTACTGTAGTATGTAGTATTAAC
ATGTAACCCTTTTCTGCATGGCATATTAACATGTAAGTACTGTAGTATGGTGTATGCACTACTAACGTAAAATTGTAAGT
ATGAAGTACAAACAATTGATTATTGGAGTGTGGAGTATTAACACCAAGCTGGAGTATGGAGTATTAACACCAAGCTGGAG
TATGGAGTATTAATACTCTTTTAAAATATGTGTCCTAAAAAACTACTCTCTCCGTCTCATAATATAGAATAATTTTTCAA
GCTATGTTAGCTTGAGAAACGATCTTATATTATGGGACGGAGGGAGTAGTATTTTGTATGTTATATACTAGTTTGTTTCA
GAATTATGGTGCATACTACATACGACTATAGTATGGAGTATATTTATAAAAGTATGGAGTATATGCACACATGAAAACCG
TGTATATAAACTTTTATTGAAGTATGGAGAATATATAATATCTTTTTTGAGCTCTATATAGTGTAATTTTTATTGGAAAT
GGAGTATATAGAATTTTTTTTAGTATGGAGTATATGGCACTATTATTTACGGACTATGGAGTATATAGCATTATTTTTGG
AGTATGGAGTATGGTGTATATGGTATTATTTTTTGAGTATGGATTAGATGGAGTATGAAGTATACTTCACGTCGTGCATA
CTCCTTGCACGTTTTAGAAGAAATATATACTCTGTACTCATTAAGGAGTATACACATTGTGAAGTATATATAGCTTTTTC
TAAAAGAAGTATGGAGTATATATGGTTTTAAGTAGATACAGTATAATCTTTTTAGAGTACGAAGTATATGGTATGACCTA
TGAAATATTTTAGTTCGTATATCAGCAGGCCACATCCATGTCCAAATTTAATCATTATCGTTGCAGTGACTACACATAAA
AGTGTTATTCTATCAACAATCGTAGTGTAGATGGATTAAATAGTCGATCAGTATTGTACTACATGTCATGCATGCGTCTG
ATGCAGATGTGATGCCATGCTTGCATCATATAATAGGTATTGACGACGGGCCGGTTGGCCGCATGGCGGCGAGGACAAGT
AGATAGTGGCAAACGAGGACGCCGATGTCAGGTTGCCAACGATGTTGGAGCATGTCTACGTACAGCGTGCAGTTTGGCCG
TCTCTCTTCGTGGTTAAAGCTCACACGATGGCCATGCATGGATGTATAGATTCTTGACGGACAGCCTGCAAAATACTTAT
CAAATAAGTATTCTCAAGTTGGAACTCTGAACAAAATCATGAGCGCACATGCCGGTCGTTGCTGGCCTTAATAGTGGCGG
GACAGATCATGGAATCATGGAGTGAAATAGCAGTACCTGATAGACGGCTTCACCATAGGCGGCCCAAGAATTTGACCGCT
CCGTTGTACATGTCGCCGGTGAAAATTAGAAGCACCATGTCCATGGTGGAGGCTAAAACCTACAACACGACAGATCGTAT
TAGTGATCGATCCAACCATGTACATACGTGTAGTACAAGATGAAAAACATGAAGAATCAGCACAAAAACCTAGATCTCAC
CATTTTCTGTCTACCGCGGTGTTGACGGCCGCTTTTGAAAAGGGCTCAATAGATCAGGGGTAGTTATACATTGGCGTTAG
ATGCCCACAAAAATAGGATACGGTTGGTAAGTTTAATTAATAAAAAACAACGGACTAGTCTCACAACCAAACCCGTTAAT
CAACATCCACTCCAAACGAGATCTGACGGCAATGGGAGCAGTGGTACCA-GAGGAATTGTTTCTTGGTCGTTTGACGCGT
TCTCCAACTGTTATATTTGACACCAGAAATCTCAATTCCAATTGATATGTTTAATCTGTGTAACCATTTGTTACGTCTTA
TAGCAATGGGAACCCTTTGGGGAAGATATGATAT-------------
>chr3A_2782
AATTGGTTTGCTACCAACATTTGGCATTGCCAATATTTGGTAAGCCAACATTTGGCAAAAACAAAAGTTGCCAACATTTG
GCAACTTTTTGTGAGATTGGCAACAAGAATTGGCAAGCAACCAATCTCTAGCCA--------------------------
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-----------------ATATTTGGCAGTTGCCAAAATTTGGCATGCCAATTTTTGGCATCAAACCAATTATGCTCAAAG
TGCCAACCACTCCATGACGAAGGCAACGACACACCACAGTGGCGAGCAGCCGACGGGCCCCACTGTCTGGCATCAGGCAA
TGACACCAGGGCCCTGCGCCCGTGTAGATTTACCCTTGTACCCTGGGGAGCCAGCCTATAAAACCCCCCAGGGGCCCTCC
ATGCAAAGGGTCTTTGACTCCTTCGGCTAGTTCGTTCCACACACACACTCATACGCAAGGGGAAGAGGAGGGCTAGTAGC
ATAATTGGTTTGCTACCAACATTTGGCATTGCCAATATTTGGTAAGCCAACATTTGGCAAAAACAAAAGTTGCCAACATT
TGGCAACTTTTTGTGAGATTGGCAACAAGAATTGGCAAGCAACCAATCTCTAGCCAATATTTG-----------------
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>SNPs
---------------------------------------S-----------------S----------------------
-----------------------------------------------------S--------S-----------------
------------S-----------------------S------------S------------------------------
-----------S-------------------------SS-----------------------------------------
-----------------------------------------------------------------------S--------
-----S--------------------------------------------------------------------------
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-------------------------------S----------------------------------------------S-
--------------S--------------------------------S--S----S------------------------
------SSSSSSSSSSSSS---------S--------S----S-------------------------------------
------------S-S--S----S-SS-SS-SS-SSSSSSSSSSSSSSS--------------------------------
----------------------------S--S-S----------------------------------SS------S---
----------------------S-S-------------------------------------------------------
---------------------------S----------------------------------------------------
-----------------S--------------------------------------------------------------
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-----------------------SS-------------S------S--S--SSSSS-SSSSS--SSSSSSSSS---S---
------------------S--S---S---------S-S--S-S-S----S-------SS----------S--------S-
-S-----S-SSSS--S-----S-----------------------S-----------------------SS---------
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---------------S-S-------S-----SS----------S-------SS------------S--------------
--------S---SS-SS---------------S--------S--------------------------------------
---S----------------------------------------------------------------------------
-------------------------------------SS----------------------------S------------
--------------------------S-----------------------------------------------------
---------------------------------------------------------------------S----------
-S-----S------------------S-----------------------------------------------------
---------------------------------------------------------S----------------------
------------------------------------------------S-------------------------------
--------------------------------S-------------------S---------------------------
-------------S-------------------------------------------------------------S----
---------S----S--------S--------------------------------------------------------
----S---------------------------------------------------------------------------
------------------S----S-S-------------------S----------------------------S-----
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--------------------------------------------------------S-----------------------
------------------------------------------------------------------SS------------
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-----------------------------------------------------------------------------S--
---------------------------------------------------------------SSSSSS-----------
----------S---------------------------------------------------------------------
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-------------S--------------------S---------------------------------------------
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-------------------------------------------------S------------------S-----------
--------------------------------S-----S-----------------------------------------
----------------------------------SSSSSSSSSSSSS
>forward_1234
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--------------CCTCTCCGTTCCAAGGTGTC----------------------------------------------
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>reverse_2708
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-------------------------------------------------------------------CCGCCTATCAGGG
AAAGGAG-------------------------------------------------------------------------
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>forward_1702
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--CGTGTGACCTGTGTTCCCTT----------------------------------------------------------
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>reverse_3214
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-------------GCATGGCTATGGATGTGGAGA----------------------------------------------
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