>input_sequence_55352
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----------------------------------------ATGAAGGCAGCAATTGTTGGAGGGTCAATTGGAGGAGTTG
TGATGGTTGTGGTGTGGTGTATCATCTCATGTTTCAAGTGGATAGGGACAACAAGCCATGACTTTGTTGCCCGAAGTGGC
GGAGCTAGACAATTCGAGTACCGTGTTCTAGCTTCTGCAACAGACAACTTCTCTGAGGAGAGGGTTATTGGGAGAGGTAA
CTTTGGAGTAGTCTACAGGGGTATGTTCTCCAACAAATTATCATCAGGTGCACCCTCCACCGGATCAGATGGTCCATCCT
ATGGGGATGAGGTGGCTGTAAAGAAGATATTGAAAGAGACAAGGGGGGGAAATCTGGACTTCTTCACTGAGATGAACACC
ATTAGCGAAGCCAAGCACAAGAATCTCGTCAAGCTGAAAGGTTGGTGTTGCAAGGAAAACAACCGGAGCCTGCTTGATTT
TATGTGCTGGTGCTGCAGAAAGAAGAAGGATGACGAGCTCTTCCTTGTCTATGAATTGGTGCCTAACGGCAATCTACACC
ATCACCTTTGCGAGAGTACGCAAGCAATACTATGGGCAACAAGGTATACTAAGAT----------TTTTTCGGACCTTAC
ATTATTTATTTTTGCGAGGATTAATGAATCGATTACATACTATTATTAATATTCATTGGATTCATTAATGTGT----CTG
TCTGGC----TTTCAGGTACCAAATTGTGAAAGACATTGGCTCTGCTCTTGTTTACCTCCATCATGACAGTGCCCCATAC
ATTTTGCACAGAGATATCAAACCAGGCAACATACTCCTGGACAACAACTTTAACGCCAAGCTTGCCGATTTCGGGCTATC
AAGGATAGGCAACCAGGACAATGTGACATTGATGACATATGCTCTAGGAACGGAAGCGTACATGGCTCCAGAATGCAAGA
AAGATGGGAAAGTCAAATTCCACCCGAGATCTGACGTATACAGCTTTGGAATCGTCCTACTAGACATTGTATGCACAGGG
AAGTCAAGGGAGCAAGTGTGGGAGCTATATCAAGGAGGCAATGTCTTGGATGCTATAGATGAAAGGTTGTGTAG---GGA
CGACTCTGACTTGACA------CAGATGCAGATGCATCGTGTGGCTGTCTTGGGACTCTGGTGTTCTCTTCTTGAAAGTG
CCAAAAGGCCTACCATTCAGAAAGCAATGGAGGTCCTGGCACGTGAT---GAGCCATTTCCCGACCTTAACTACTCGGTG
AACACTTCGGTGCCCTCAGC------GCATCATGGAACAGACACCAGTA---GCTCTGACGAGCAGGCACTTGTACCAGA
TA-------ACAGCTAG---------------------------------------------------------------
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>chr2D_1_TraesCS2D01G017500
ATGATGCAAGACGCATCACCGGAACGGGGGCTAGGCGGGAAGACCTTTATTCCATTTTCAGGAAGCCGCCACCGTCTCGC
CTTCCTGAGCAGGACACAAACCCTAACAAAGCTCGAAAAAAGATCTTAAAACGGAGCCCTCCCACCGGCAAGGGCCGAGA
TCCACTCCGCCTCCATGGCCATAGGGCCACCGGAGACGGGATGGACCAGCACCGGCGCCGGTGGGAGGCAGAAAGCTAGG
GTTCTTGAGGCGGCTGCTAGACCTCATATGCATAATTGCATTTGTAATGTTCCTCATCACGAGGCCGTCGAAAGTAGACC
CGCATGGAATGTTTGAAAATCAACTTACCATGACAAAAAAAAAGCATGTGTTTAGTATAAACAAGTTTTTTCCTCACAAC
CGGGTAGGTACGTAGATGGGCTGGTATGAATGGTGTGGCCTAAAAACAAGTTTTACTGTTTAAAGAATATTTTAATACAA
TTTTAAGACTTGCCCTAAGTATTTTTTAAAAGAGAACTTGCGTGACAAAAAGTAAGTTATAAGAAACTAGTGCATACCCT
ATAAACAATGAGAAAGCAATTTTAATGATATGGAATGTTTTACCCCTCAATAATGTATAATAAATGATTGGCTTACCGTT
GTGGTAGAAAATTGATCCGAGCTAGAAAAAGCATGCTTGTTCAACAAACCTGCTTTTCATGACTCAAAGTTGATATCTAA
GAATATCCATCAGAACATCCCTGTGCAAGATTTAGTATCGAATATCTAATCGTGAGGAACACAACAGTGAAAACCGACTT
TGGGTTGGACAAAATGCATTTATGAAGGTTAGAAACTGTTTTGCAAGTTAGTGATGTCATATATATATATGGTTTAATGC
TGATTTTCTTTGTAGTACGGTATGTCTGCACTCGTGAACTGAAAAAGCGCATGAGCGTTCCCTAGCAGCATCATTTATAA
ATTACTAGCAATTATTTTGTGTATTCATACAAATCGTGACATGAAGGCAGCAATTGTTGGAGGGTCAATTGGAGGAGTTG
TGATGGTTGTGGTGTGGTGTATCATCTCATGTTTCAAGTGGATAGGGACAACAAGCCATGACTTTGTTGCCCGAAGTGGC
GGAGCTAGACAATTCGAGTACCGTGTTCTAGCTTCTGCAACAGACAACTTCTCTGAGGAGAGGGTTATTGGGAGAGGTAA
CTTTGGAGTAGTCTACAGGGGTATGTTCTCCAACAAATTATCATCAGGTGCACCCTCCACCGGATCAGATGGTCCATCCT
ATGGGGATGAGGTGGCTGTAAAGAAGATATTGAAAGAGACAAGGGGGGGAAATCTGGACTTCTTCACTGAGATGAACACC
ATTAGCGAAGCCAAGCACAAGAATCTCGTCAAGCTGAAAGGTTGGTGTTGCAAGGAAAACAACCGGAGCCTGCTTGATTT
TATGTGCTGGTGCTGCAGAAAGAAGAAGGATGACGAGCTCTTCCTTGTCTATGAATTGGTGCCTAACGGCAATCTACACC
ATCACCTTTGCGAGAGTACGCAAGCAATACTATGGGCAACAAGGTATACTAAGAT----------TTTTTCGGACCTTAC
ATTATTTATTTTTGCGAGGATTAATGAATCGATTACATACTATTATTAATATTCATTGGATTCATTAATGTGT----CTG
TCTGGC----TTTCAGGTACCAAATTGTGAAAGACATTGGCTCTGCTCTTGTTTACCTCCATCATGACAGTGCCCCATAC
ATTTTGCACAGAGATATCAAACCAGGCAACATACTCCTGGACAACAACTTTAACGCCAAGCTTGCCGATTTCGGGCTATC
AAGGATAGGCAACCAGGACAATGTGACATTGATGACATATGCTCTAGGAACGGAAGCGTACATGGCTCCAGAATGCAAGA
AAGATGGGAAAGTCAAATTCCACCCGAGATCTGACGTATACAGCTTTGGAATCGTCCTACTAGACATTGTATGCACAGGG
AAGTCAAGGGAGCAAGTGTGGGAGCTATATCAAGGAGGCAATGTCTTGGATGCTATAGATGAAAGGTTGTGTAG---GGA
CGACTCTGACTTGACA------CAGATGCAGATGCATCGTGTGGCTGTCTTGGGACTCTGGTGTTCTCTTCTTGAAAGTG
CCAAAAGGCCTACCATTCAGAAAGCAATGGAGGTCCTGGCACGTGAT---GAGCCATTTCCCGACCTTAACTACTCGGTG
AACACTTCGGTGCCCTCAGC------GCATCATGGAACAGACACCAGTA---GCTCTGACGAGCAGGCACTTGTACCAGA
TA-------ACAGCTAGACCTCTCGGTGAGCTGCATGCATGACTTTTGGGGTGGTTATGTTT---GTGGATATGAACTAT
TTCATTATATGTGTATGTATACATGGAGATAGTCAGCTCTCAACGTTCCTCAGTACGACATGGAGCGCATGCTTCTTACA
CATCTTGGTGGTAAATAATGTTGCTTCTTTCATCTATTATTGTAGTATGCATCATGCTGGCCTTTGTGGATCAACATGCA
TGTCAATGGCCCTCTAAAAAATGCAAGTCAATGGAAAATTTAATCTACACTCGGTAGGTTTTTCTCCTTATGACCGAACA
CTTGGCACACCATTGCATTTGAATCACGCGGTCACAATTTGATAGGAGCAGAGGTGCAGCCATACAAGCACTCTTCAATT
GTACCACAAGGCCTAAGATTTTTTTGAACACCTAATTACATCTGTATGTTTGCTCCAGTTTATAAGGAAAACTAGATCGA
AAACTTAACAAACTGACTCGTTTATGAGGGAAACTGGGCCGAAAACCGTACAAGTAACAACAAAAAAGGAAGATGAGAAA
AGGAAAGGGCGCCTAGAACATGGCACGACCTAGCTACCAGACAAAGACCATCACCAGTAGAGACATAAGTAGATGTGGGG
TGTCGTCGAGAGCTCACAATACCAATACTTTGCAAACAACTGCGCATCGGCAAGCATACCGACCCCCACGGCACAACTCA
GGAGCGTCCAAATCAACAAGTGTCATACCAGACATGATCCTTGACAGGACTCCACCACATGAAATCAGAACGGTTAGCAA
GATTGTGAGGCATCGTGCACCATCATTGAGCAAAACTGAGCCTACACAGCACCAAGAGCACAAAGATCGCCGCAACGCAA
CGACAACCATGAGAGAGTCTTGAGCAAGCATTACCGGATGGTGCAACACGTAAGGGGCCGAGGCGGATGGATGGCATCGA
AGGGCTCACATTGACGCCTTCAAGAAGGAGAACAACGTCCATAGATTGTGTCATCAATGG
>chr2A_1288
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-------TGAGGTGGCTGTAAAGAAAATCTTGAATGAGCCGAGGGGAGGATATCTTGACTTCTTCGCCGAGATGAACACC
ATTAGCGCAGCGAAGCACAAGAATCTCGTCAAACTGAAAGGTTGGTGCTGCCGGGAAAAAAGCCGGAACATGCTCATTTT
CTTGTGCTGGTGCT---GCAGGAAGGAGGATGACGAGCTCTTCCTTGTCTATGAACTAGTGCCCAACGGCAATCTGCACT
ACCACCTATGTGAGAGTGAGCAAGTGATAGCATGGCCAACAAGGTACTAGAATGTATACCCTGCATTTTTCAGTCCTTAT
ATTATTTATTTCCACGAGGATTAATAATCA-ATTATACTTTTTGTTTAACGTTCCATGGAAACATTAATTTGCTTGCATT
TCTGCC----TGTTAGGTACCAAATCATCAAAGACATTGGCTCTGCTCTTATTTACCTCCACCATGATTGTGCCCCTTAT
ATTCTGCATAGAGATATCAAACCAAGTAACATACTCCTGGACAACAACTTCAATGCCAAGCTTGCTGACTTCGGGCTGTC
GAGGATCGGCAACCAGGACAACGCGACGCTGTTGACAGCCGCTATAGGGACCGAAGGGTATATAGATCCAGAATGCAGGA
AAATGGGGAAAGTTAAGTTCTACCCGAGCTCTGACGTCTATAGCTTCGGCATCGTCCTGCTAGACATTGTATGCACAGGG
AAGTCCAGGGAGCAAGTCTGGGAGCTGTACATAAAAGGCAAGGTCGTGGAGGCTGCAGATGGAAGGCTTCATGGCGGCGA
CGACTTGGACA------------AGAGGCAGATGCAGCGCGTGGCTATCCTGGGACTCTGGTGCTCTCTTCGTGATAGTT
CCATGAGGCCTACCGTTAGGAAAGCAATGGAGGTCTTGGAACGTGAC---GAGCCGTTGCCTGACCTTAACCACTTGGCG
AACACTGCGGTACCCTCGGC------ACAGCAAGACACCTACATCATTA---GCTCTGACCAGCATGCACTTTTGTCAGA
TG-------GCAGCTAGATCTTTCAGTGAGCCAGAAGAATGACTTTTGGGATGGTTACGT--------------------
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>chr2A_1289
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--------GAGGTGGCTGTAAAGAAGATCTTGAAAGAGACAAGGGGAGGAAATATGGACTTCTTCACCGAGATGAACACC
ATTAGCGAAGCTAAGCACAAGAATCTTGTCAAGCTGAAAGGTTGGTGTTATAGAGAAAATAGCCGGAACCTGCTCGATTT
CATGTGTTGGTGTTGCAGCAAGAAGGAGGATGATGAGCTCTTCCTTGTTTATGAGCTAGTGTCTAATGGCAATCTGCACT
ACCACTTACGCGAGGGTAATCAAGTAATATCATGGCCAACAAGGTAT-----TGTACACCAAGGATTATTTTTTCCTTAC
ATTATTTCAATTTGCAAGGATTAAAAGTC---TTATATATTGTTATAAACGTTGCAGAGATTCATTAATTTGT----GTG
TCTGCC----TGTTAGGTACCAAATCGTGAAAGGTATTGGCTCTGCTCTTGTTTACCTCCACGATGAGTCCGACCCTTAC
ATTTTGCATAGAGATATCAAACCGAGCAACATACTCCTGGACAACAACTTCAACCCCAAGCTTGCTGACTTCGGGCTGTC
GAGGATCGGCAACCAGGACAACACGACGCCCATGAAAACTGCTTTAGGGACGGAAGGGTACATAGATCCAGAATGCAGGA
AAGATGGGAAAGTCAAGTTCCACCATAGTTCTGATGTATACAGCTTTGGAATCGTCCTACTAGACATTGTATGCACAGGG
AAGTCTAGGGAGCAAGTCTGGGAGCTATATAAAGGAGGCAATGTCATGGAGGCTGCATATGAAAGGTTGCATGGCCAGGA
CGACTTGGACAAGAGGCGGATGCAGATGCAGATGCAGCGTGTGGTTGTCCTGTGACTTTGGTGTTCTCTTCTTGATGGTG
CCAAAAGGCCTACCATTCAAAAGGCAATGGAGGTCCTTCAGCGTGAC---GAGCAGTTGCCTGACCTTAACTGCTTGTTA
AACACTTCGGCACCCTCAAC------ACAGCAAGACACTTACGCTAGTA---GCTCTGACCTGCAGGCACTTATATCACA
TG-------ACAGTTAGATCTTTCGGTGAAGGCCATG-ATGACCTTTTGGGTGGTTATGACGTCGGTCGATGTGGAGTAC
TTCAGAATAAATGCATG----CATGGATATAGTCGGCTCTCAACGTTCCTAACTACG-----------------------
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>chr2B_1625
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----------------------------------ACATACCGTTATTAACATTCCACTCATTCAATAATTTGT----TGG
TCTGCCTATTTTTTAGGTACCAAATTGTGAAAGACATAGGCTCGGCCCTTGTTTACCTCCACCACGAGTGCGAACCTTAC
ATTCTGCACAGAGATATCAAACCAGGCAACATACTCCTAGACAACAAATTCAATGCCAAGCTTGCTGACTTCGGGTTGTC
GAGGATCGGCAACCAGGATAACATGACTTTGATGACAACCGCGATAGGGACGGAAGGGTATATTGATCCAGAATGTAGGA
AAGATGGGAAAGTCAAGTTCTACCCTAAATCCGATGTCTACAGCTTTGGAATCGTTCTGCTAGACATTGTATGCACAGGG
AAGTCCAGGGAGCGAGTCTGGGAGTTGTACATTAGAGGCAAGGTCATGGAGGCTACAGATGGAAGGCTTCATGGCGGCGA
CGATTTGGACAG------------GAGGCAAATGAAGAGCGTGGCTGTCCTCGGACTCTGGTGTTCTCTTCCTGATGGTG
CCAAGAGGCCTACCGTTCGGAAAGCAATGGAGGTCCTGGAACGTGAT---GAGTCGTTGCCTGACCTTAACTACCGGGTG
AACACTTCGGTACCCTCAGCCTCAGGACATCAACACATCGACACCAGTA---GCTCTGACCAGCAGGCATTTATGTCAGA
TG-------AAAGCTAGATCTTTCAGTGAGCCGCATGCATGACTTTTGGGATGGTTA-----------------------
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>chr2B_1650
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-----------------------------------------------------------ATTTATTAAGTTGT----ATG
TTTGTG----TATCAGGTACCAAATTGTGAAAGGAATCGGCTCTGCTCTGGTTTACCTCCACCATGAGTGTGACCCTTAC
ATTCTGCATAGAGATATCAAACCAGCCAACATACTCCTTGACAACAACTTCAATGCCAAGCTTGCTGACTTCGGGTTGTC
AAGGGTTGGCAACCAGGACAATGCGACGTTGATGACACTCGCGCAAGGGACGGAAGGGTACATAGATCCAGAATGCAGGA
AAGATGGGAAAGTCAAGTTCTACCCTAGATCTGATGTCTACAGCTTTGGAATCGTCCTACTAGACATTGTATGCACACGG
AAGTCCAGGGAGCAAGTCTGGGAGCTATATAAAGGAGGCATGATCATCGAGGCTGTAGATGAAAGGTTGCATGG---GGA
TGACTTTGATAGGTG------GCAGACGCAGATGCAGCGTGTGGCCGTCCTAGGACTCTGGTGTTCTCTTCTTGATGGTG
CCAAAAGGCCTACCATTCAGAAAGCAATGGAGTTCCTGGAACGTGATCATGAGCCGTTGCCTAACCTCAACTATGCGGTG
AACTCTTGTGTACCCTCGAC------ACATCATGATGCCTACACTAGTCGCTGCTCTGATGAGCAGACACTTATGTCAGA
TGTCAAGTAACAGCTAGATCTTTCAGTGAGCCGCATACATGACTTTTCCGGTG---------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---------------------S-----------------S--------------------S------------
-----------S----------------------------------------S------S-S-----S------S-----
S-----------------S------S-----------------------------S-S-----------------S---S
-S-----S----------S-----S----SS----S-----------SSS--SS-----------------S-S------
-------------------------S-SSSS----------S-------S----SS-------------S-------S--
----S--------------------------------------------------------S-----SS-------S---
--------------------------------------------------S--------------S--S--------S--
------S--------------------S---------SS---------S-------S------S-S-----------S--
----------------S---------------------------------------------------------------
-----S-----------S------------S--------------S----S------------------SS-S-------
-----S----SS--SS--------------------S------------S-------------------------S----
---------------------------------------S---------------S--S--S------------------
-----------S--------------S-------SS--S---------------------------------S--S----
-S----------------S--S---------S----------------------------SS-----S---S--S-S--S
----SS---SS--S---SSSS------S------S---------------S-S----SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_425
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-----AGGTACGTAGATGGGCTGGT-------------------------------------------------------
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>reverse_1441
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TATGTGCTGGTGCTGCAGAA------------------------------------------------------------
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>forward_1012
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--------------------------------ATCGTGACATGAAGGCAGCA----------------------------
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>reverse_2880
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-------------------------------------------------------------------------------A
AGGAAAGGGCGCCTAGAAC-------------------------------------------------------------
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