>input_sequence_55292
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------------------------------ATGGACTCCGTCCTTGAGATCCAGAGTCAAGCGAAGCAGCAACTTCAGCG
TGCAGCAATGGCAGCCGCACCGGCTGAAGTTCTCCCGCCTTGTAAGAGGCAAAAGAAGAACCCCAGTTGTCTGGGAACCT
CCGCCGTCCTTCCGGCCA---CGGCGACTGCCGACTGGTTCGCGCTCCAGCTCGACATAGTCCGCCGCATCGCCGACTCC
TTCCTCGCCACCAATGACATTGACTGCTACATGGACTTCCGCGCCGTCTGCCACAGCTGGCGTTCCGCCACCGACGACCC
CAAGGACAACATTTTGGACTACCGGTTCCTTCCGCGCCGATGGATCATCCTTGACGAGGTCTTTCAGAGTGGGACTCACC
GCCTCTTGGTAAACACCGCCACCGGCCGAATCCTTCACAGGGAGCTCCCGCTGCTCTCCGACTACTATATCGTCACCACC
ACTCTCGACGGCTTCTTCGTCCTGGCCGATAGGGGCCCCCCTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCGT
CATCCCTTTCACCGTGCCCGTGCCGCCTGAGGTAAAGGTCACCTGTTCGCTCTGCTTTGAGTTTGCTTCGCCCATGCTCA
CCTTGCTCTCCAAGTCATTTTGCAAGATATACACAGCCAGTCCTCACAGTATCCGCACCGAAGACT------TTGAGATT
TCACTCTATGGTCTGTTTCGGAGGGCGGTCGAAGGTGATTTGGCCGGCCTTTGGTGGCTACCAGCCGGAAGCTTGGAATC
AGCCGAAACAGCTGCTGTGAATGCGATTGGC-AAGATCTGCGATGTGATGAAGTCGCTCCATGTTGACCCGTTGAAGTTC
TTTTCTGGTGATCCTCCTGATATGGGGCTTGCAGACGACACCAAGTGTTTCCTAATGGATTTTGGTGGACAACTGCTGGC
CACCATCAAGGGACAAC---TCGTCCAGATTTTCAGGTACGAAGCCAAGAATGGCGTGCTTTTGCATTTGAAGAGCATCG
GCAACCATGCCATCTTCCTTGGTCATCATAGGTGCATAGCTGTGGATACTGATATGTTCCCATTGATCGAGGCAAACTGT
GTTTACTACACTGAACAACTGGGTTTGTATGCTCGTATCCGGAAATGCAACATCAAGGACGAGAAAGTAGAGAGCATCTC
GGAAGCCGTTGATTTTGTGAAGCAGGACAAGCAGTTTGTCCTCGTCGGCGACCGTCCTTTTACAATCATCCAGCTTCTGT
C-------------------------------------------------------------------------------
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-------------------------------------------------AAGCTACACCATCAACATCCGGGATTCTGAA
CTGGCCTTACATCAGATCACATGA--------------------------------------------------------
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>chr3A_1_TraesCS3A01G464700
TGTTTTTGTGGGCCGCGTTAAAAATTTTACAGGCCAGGCCGCGGATACGGTGTCTATTCTGACGAGAGAAACGAGCCGAA
CCCGTATACTCGCCGGAATTATACGAGTTCAGTTTTTTTTTGCGTAGTAATACGTGTCTCATTAATAAAATAAAGATTCA
CTTACAGGCCATGTAAACATCAACATTACATGACTGAAAAGATAAGATAACCTATGTAAAAGAAAAACTAGCACATGTTC
CTCTCCACTAAAAAAAGAAGACAGCATCACCTTTTCACTCGAGCTCGTTCTATCTTTTTTATGGGGTCGGCTAGAGATGC
TCTAAGTGAAAAGGAGGGAGTATTT---GTATAAATCTACGTCGTCTATATTGGAGACGCTTAAAAGGACACCATCCCCT
GTGCGTGCCAAATTGGC-GAACCTCCTT----CCTTTGGAAGAGACAAATCGCCGAGCGACTAGCGCGCCGCC------C
ACAAGGTTTGTCTCTTCTCCCCTCCCTCCCTC--TCTGCTGCGCCGCCGCTAGGGTTAGCCTGGGCCGCGCCG-------
-TCGCCTAGACTCCGCGGGACGCGATGTGGTTGCCCTCGCTCGGTCA----CGGCCAGGAGGGTGGACTGGCGGTCGACG
AGTTGCCGACCGAAGGAGGGCCGCCGCTTGCTCTGCCACCCCCGATCTGGAATAGAAGGGAGCAACTCCGGCGGCGAAGG
AGATG--------------------GGGAGAGGACGGCGGATTGGGGGCAGATGCTGCTGCTATTTGTATGGAGGATTGG
GGAAGAAGATGGATCTCTGTTT---GGGAGAGCAGAAAGGATTGCCTGCTGCATGAGAGAGCAGAGGGGATGCAGTGTAG
------------------TGTAGATATGAGGATCTGCTTGATTTGCTTGATGCTTGTGCTGCTGCTTGCTTTGCTTCATA
CTTTTGTTCGTTTCTCGTTTGCTCATCTCTTCTTAATCAACTGCTGTGA-TTCTTACAACTTGTGTCCTTTGTCCCTTTT
GCAGGGAGGATTAGGTTATTAGATTCTGCAATGGACTCCGTCCTTGAGATCCAGAGTCAAGCGAAGCAGCAACTTCAGCG
TGCAGCAATGGCAGCCGCACCGGCTGAAGTTCTCCCGCCTTGTAAGAGGCAAAAGAAGAACCCCAGTTGTCTGGGAACCT
CCGCCGTCCTTCCGGCCA---CGGCGACTGCCGACTGGTTCGCGCTCCAGCTCGACATAGTCCGCCGCATCGCCGACTCC
TTCCTCGCCACCAATGACATTGACTGCTACATGGACTTCCGCGCCGTCTGCCACAGCTGGCGTTCCGCCACCGACGACCC
CAAGGACAACATTTTGGACTACCGGTTCCTTCCGCGCCGATGGATCATCCTTGACGAGGTCTTTCAGAGTGGGACTCACC
GCCTCTTGGTAAACACCGCCACCGGCCGAATCCTTCACAGGGAGCTCCCGCTGCTCTCCGACTACTATATCGTCACCACC
ACTCTCGACGGCTTCTTCGTCCTGGCCGATAGGGGCCCCCCTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCGT
CATCCCTTTCACCGTGCCCGTGCCGCCTGAGGTAAAGGTCACCTGTTCGCTCTGCTTTGAGTTTGCTTCGCCCATGCTCA
CCTTGCTCTCCAAGTCATTTTGCAAGATATACACAGCCAGTCCTCACAGTATCCGCACCGAAGACT------TTGAGATT
TCACTCTATGGTCTGTTTCGGAGGGCGGTCGAAGGTGATTTGGCCGGCCTTTGGTGGCTACCAGCCGGAAGCTTGGAATC
AGCCGAAACAGCTGCTGTGAATGCGATTGGC-AAGATCTGCGATGTGATGAAGTCGCTCCATGTTGACCCGTTGAAGTTC
TTTTCTGGTGATCCTCCTGATATGGGGCTTGCAGACGACACCAAGTGTTTCCTAATGGATTTTGGTGGACAACTGCTGGC
CACCATCAAGGGACAAC---TCGTCCAGATTTTCAGGTACGAAGCCAAGAATGGCGTGCTTTTGCATTTGAAGAGCATCG
GCAACCATGCCATCTTCCTTGGTCATCATAGGTGCATAGCTGTGGATACTGATATGTTCCCATTGATCGAGGCAAACTGT
GTTTACTACACTGAACAACTGGGTTTGTATGCTCGTATCCGGAAATGCAACATCAAGGACGAGAAAGTAGAGAGCATCTC
GGAAGCCGTTGATTTTGTGAAGCAGGACAAGCAGTTTGTCCTCGTCGGCGACCGTCCTTTTACAATCATCCAGCTTCTGT
C-------------------------------------------------------------------------------
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-------------------------------------------------AAGCTACACCATCAACATCCGGGATTCTGAA
CTGGCCTTACATCAGATCACATGAGGTGCTGATAAACTGGATGA---TCTGGCC-----TATGGTATGCATTGCTAAGAA
AGGGTTCCTGTTTTGT------TACTTTGGTTAAGCGTTGATTTGTTCCGGGCAAGAAACGGATTGAATC-TAGGCTGTA
TCTTCTATGATGGAACTACTGTCTACTACATTAT---------------------GTCCTCCCCTGTTTAGCCATATGC-
--TATCTTGTGTGCAATGTGGTTCTTAATTTCTGCAGTAGATAACGTCAGCTAGACCTTTCCCCCTTTTTATGTATTTT-
--GCTCTGCAACTGAATCTTTGAAAATGTGGCATGCCTCATTGTTCTGTATAATCTTTGAAAATGTGGCATGCCTCATTG
TTCTGTATAATCTTTGAAAATGTGGCATGCCTCATTGTTCTGTATAGTATGCTTACCAGCGGTTTGTGGAACTACTGTAT
CTTGCGGCCAGGAAGGGCTTTAAGGCACCTCTGATAAATTGGATGATTGAGTCCATGGGTTCCTGTTTTCTCTCTGGTCT
TATGCTTTGTCATGCCGGTTATGCCTTGACTTGCTCCGGCCAAGAAACTGGTTGTCATGCTGGTTATGCCTTGACATGCT
GATATGTACCCAATGGTCCAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGC
AGCTGAATCATTGAATATATGCTGTG
>chr3D_324
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---AAATGGAAAGGAAGGAGTATTCTACGTATACATGTACGTCGTCTATATTGGAGACGCTTAAAAAGACACCATCCCCT
GTGCGAGCCAAATTGGCGGAACCTCCTTCCTTTGGATGGAAGAGGCAAATCGCCGAGCGACTCGCGCGCCGCC------C
AGAAGGTTTGTCTCTTCTCCCCTCCCTCCCTCCCTCTGCTGCGCCGCCGCTAGGGTTAGCCTGGGCTGCGCCGC------
--CGCCTAGACTCCGCGGGACGCGATGCGGTTGCCCTCCCTCCCTCTGTCGCGGCCAGGAGGGAGGACCGGCGGTGGACG
AGTTGCCGAGAGGAGGAGGGCCGCCGGTTGCTCTGCCACCCCCGATCTGGAAAAAAAAGGAGCAAGTCCGGCGGCGAAGG
AGATGGGGCGAGGTGGCCCGCTCGAGGGAGAGGACGGCGGATTGGGGG-AGATGCTGCTGCTATTTGTATGGAGGATTGG
GGGAGAAGATGGATCAGGGG---------GAGCAGAGAGTATGGCCTGCTGCATGAGAGAGCAGAGGAGATGCAGTATAG
ATATGAG--------------------------------GATTTGCTTGCTGCTTGTGCTGCTGCTTGCTTTGCTTGATA
CTTTTGTTCGTTTCTCGTTTACTCATTTCTTGGTGATCAATTGTTGCA--------------------------------
----GGAGGATTGGAGCATTGGATTCTGCAATGGACTCCGTCCTTGAGATCCAGAATCAAGCTAAACAGCAACTCCAGCG
TGTAGCAATGGCAGCCGCACCCATTGAAGTTCTCCCACCTTGCAAGAGGCAAAAGAAGAACCCCAGTTGTCTGGGAACCT
CGCCGGTCCTTCCGGCCA---CGTCAACTGCAGACTGGTCCTCACTCCAGCTCGACATAGTCCGCCGCATTGCCGACTCC
TTCCTCGCCACCAATGACATTGACTGCTACATGGACTTGCGCGCTGTCTGCCACAGCTGGCGTTACGCTACCGACGACCC
CAAGGAGAATATTTTGGACTACCAGTTCCTTCCGCGCCGATGGATCATCCTCGACGAGGTCTTCCAGAGTGGGACGCGCT
GCCTCTTGGTCAACACCGCCACCGGCCGAATCCTCCACAAGGAGCTCCCTCTGCTCTCCGACTACTATATCGTCACCACC
ACTCTCGACGGCTTCTTCGTCCTTGCCGATAGGAGGCCCCCTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCAT
CATCCCTTTCACGGTGCCCGTGCCGCCTGAGGTGAAGGTCACCTGTTCGCTCTGCTTTGAGTTTGCTTCGCCCATGCTCA
CCTTGCTCTCCAAGTCATGTTGCAAGATATACATATCCAGTCCTCACAGTATCCGCACCGAAAACT------TTGAGATT
TCACTCTATGGTCTCTTTCGGAGGGCTGTCAAAGGTGATTTGGCCGGCCTTTGGTGGCTACCAGCCGGAAGCTCGGAATC
AGCCGAAACAGCTGCTGTGAATGCGATTGGC-AAGATCTCCAATGTTATGAAGTCGCTCCATGTTGACCCGTTGAAGTTC
TTTTCTAGTGATCCTCCTGATATGGGGCTTGCAGACGACACCAAGTGTTTCCTAATGGATTTTGGTGGACAACTGCTGGC
CACCATCAAGGGACAAC---TCGTCCAGATTTTCAGGTACGAAGCGAAGAATGGCGTGCTTTTGCATTTGAAGAGCATCG
GCAACCATGCCATCTTCCTTGGTCATCATAAGTGCCTAGCTGTGGATACTGATATGTTCCCATTGATTGAGGCAAACTGT
GTTTACTACACTGAACAACTGGGTTTGTCTGCTCGTATCCGGAAATGCAACATCAAGGACGAGAAAGTAGAGAGCATCTC
GGAAGCCGTTGATTTTGTGAAGCAGGAGAAGCAGTTTGTCCTCGTTGGCGACCGTCCTTTTACGATCATCCAGCTTCTGG
C-------------------------------------------------------------------------------
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-------------------------------------------------CAGCTACACCATCAACATACGGGATTCTGAA
CTGGCCTTACATCAGATCACATGAGGTGCTGATAAACTGGATGA---TCTGACC-----TATGGTATGCATTGCTAAGAA
TGGGTTCCTGTTTTGT------TGCTTTGGTTAAGCGTTGATTTGTTCCGGGCAAGAAACGGATTGAATC-TAGGCTGTA
TCTTCTATGATGGAATTACTGTCTACTACCTTAT---------------------GTCCTCCACTGTTTAGCTTTATGC-
--TA----GTGTGCAATGTGGTTCTTAATTTCTTCAGTAGATAATGTCAGCTCAACCTGTCCCCCCTTTTATGTATTTA-
--GCTTTGCAACTGAATCTTTGAAAATGTGTCATGCCTCATTGTTCTCTATGATGTTT----------------------
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>chr3B_364
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----------------------------------------------TATATCGGAGACGCTTAAAAAGACACCATCCCCT
GTGCGTGCTAAATTGGC-GAACCTCCTTCCTTCCTTTGGAAGAGGCAAATCGCCGAGCGACTCGCGCGCCGCCGCCGCCC
AGAAGGTTTGTCTC---TCCCCTCCCTCCCTCTCTCTGCTGCGCCGCCGCTAGGGTTAGCCTGGGCTGCGTCTTCGGCTC
TTCGCCTGGACTCCGCGGGACGCGGTGTGGTTGCCCTCCCTCGCTCTGTCGCGGCCAGGAGGGAGGACCGGCGGTGGAGG
AGTTGCCGAGAGGAGGAGGGCCGCCGCTTGCTCTGCCGCCCCCGATCTGGAAAAAGAAGGAGCAACTCCGGCGGCGAAGG
AGACGGGGCGAGGTGTCCCGCTCGACGGAGAGGACGGCGGATTGGGGG-AGAAGATCT----------------------
----GAAGATGGATCAGGGGACTAGGGGAGAGCAGAGAGGATTGC------CATGAGAGAGCAGAGGGGACTAGGGGAGA
GCAGAGAGGATTGCCTGCTGTAAATATGAGGATCTGTTTGATTTGCTTGATGCTTGTGCTGCTGCTTGCTTTGCTTGACA
CTTTTGTTCGTTTCTCGTTTGCTCATTTCTTGGTGATCAATTGTTGCCATTTTTTACAACTAGTGTCCTTCGTCC-TTTT
GCAGGGAGGATTGGAGCATTGGATTCTGCAAAGGACGGAGTCCTTGAGATCCAGAATCAAGCTAAGCAGCAACTGCAGCG
TGCAGCAATGGCAGCCTCTCCGGCTGAAGTTCTCCAGCGTTGCAAGAGGCAAAAGAAGGACCCCAGTTGTCTGGGAAACT
CGCCGGTCCTTCCGGCCA---CGGCAACTGCAGACTGGTCCTCGCTCCAGCTCGACATAGTCCGCCGCATCGCCGACTCC
TTCCTCGCCACCAATGACATTGACTGCTACATGGACTTGCGCGCCGTCTGCCACAGCTGGCGTTCCGCCACCCACGACCC
CAAGGACAACATTTTGGACCACCGGTTCCTTCCGCGCCGATGGATCATCCTCGACGAGGTCTTTCAGAGTGGAACGCACC
GCCTCTTGGTCAACACCGCCACCGGCCGAATCCTCCACAAAGAGCTCCCTCTGCTCTCTGACTACTATATCGTCACTACG
TCTCTCGACGGCTTCTTCGTCCTGGCAGATAGGAGCCCCCCTCATGCTGCTCGTGTCTTCAACCCTCTCACTGGTGGCAT
CATCCCTTTCACGGTGCCCGTGCCGCCTGATGTGAATGCCCCCTGTTCGCTCTGCTTTGGGTTCGCTTCGCCCGTGCTCA
CCTTGCTCTCCAAGTCATGTTGCAAGATATACATAGCCAGTCCTCACAGTTTTGGCGCCCATGACT------TTGAGCTT
TCACTCTATGGTCTTATTAGGAGGCAGGTCAAAGGTGATTTGGCCGGCCCTTGGTGGCTATCAGCAAGAAACTTGGAATC
AGACGAAACAGCTGGCGTGGTTGT------CAAAGATCTGCGATGTGATGAAGTCGCTCCGTGTTGACCCGTTGAAGTTC
TTTTCTGGTGATCCTCCTGATATGGGGTTTGCAGACGACACCCGGTGTTTCCTAATGGATTTTGGTGGACAACTGATGGC
CATCATCAAGGGACAAC---TCGTCCAGAATTTAAGGTACGAAGCCAAGAATGGCGTGCTTTTGCATTTGAAGAGCATTG
GCAACCATGCCATCTTCCTTGGTCATCATAGGTGCCTAGCTGTGGATACTGATATGTTCCCATTGATTGAGGCAAACTGT
GTTTACTACACTGAACAACTGGGTTTATCTGCTCGTATATGGAAATGCAACATCAAGGACGAGAAAGTTGAGAGCATCTC
GGAAGCCGTTGATTTTGTGAAGCAGGATAAGCAGTTTGTCCTCGTCGGCGACCGTCCTTTAATGATCATCCAGCTTCTGT
C-------------------------------------------------------------------------------
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-------------------------------------------------AAGCTACACCATAAATATCCAGGATTCTGAA
CTGGCCTTACAGCAGATCGCATGAGGTGCTGATAAACTGGATGA---TCTGGCC-----TATGGTATGCATTGCTAAGAA
ATGGCACCTGTTTTGT------TATTTTGGTTAAGCCTTTGTTTCTTCCGGGCAAGAAACGGATTGACTCTTAGGTTGTA
TATTCTATGATGGAATTACTGTCTACTACCTTAT---------------------GTCCTCCACTGTTTAGATTTATGC-
--TA----GCGTGCAATGTGGTTCTTAATTTCTGCAGTAGATAATGTCAGCTCAACCTGTCCCCCCTTTTATGTATTTA-
--GCTTTGCAACTGAATCTTTGAAAATGTGTCATGCCTCATTGTTCTCTATAATCTTT----------------------
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>chr3D_1047
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----------------------------------------------------------------------------AGCG
AGCAGCAATGGCGGCCGCCCCCGCTGAAGTTCTTCCGCCGGCCAAGAGGTGGAAAAAGGACCCCAATTGCCTGGAAACCT
CACCGGTCCATCCGGCCAATGCGGTGACCGCAGACTGGCCCTCGCTCCCAGACGATATCATCCGCCGCATCGCCGACTCC
TTCCTCGCCGCCAACGACCTAGATTGGTACATGGATCTGCGCGCCGTCTGCCACAACTGGCGCTCCGCCACCGACGACCC
CAGGAACAACACCTCTGACCCCCGGTTCCTCCCATGCCGCTGGATCATCCTCGACGAGGTCTTCGAGAGCGACACGCGCC
GCCTCTTGGTCAACACCGCCATCGGCCGGTTCCTCCATAAGGAGCTCCCGGCGCTCCGCGGCTACCACGTTGTCGCCACC
ACTCTATGCGGCCTCTTCGTCATGGCCGACAGGAGCGCTCCTCACGCCGCTCGTGTCTTCAACCCTCTCACCGGCGATAT
CATCCGTTTCACGGCGCCA-TGCCGCCCGAGGTGCAGGTCACCGCCGCCGTCTGCTTTGACTTCTCTTGGCCCTTGCTCG
CCTTGTTCTGCGACTCATGTTGCAAGATGTACATAGTCAGTCCACACAGTTCTCACTCCCAAGACTATGTCTTTGATCCT
AGAGTTTACAGTTTCTTCCGGAGCGCGGTCGGAGGTGGTTTGGTCGGCCGTTGGTGG-----------------------
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>chr3A_1366
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------------------------------------------------------------------------------CC
GCCTCTTGCTCAACACCGCCACCGGCCGGTTCCTCCACAAGGAGCTCCCGGCGCTCCGCGACTACTGCGTCGTCGCCACC
ACCCTCCGCGGCTTCTTCGTCCTGGAAGACAGGAGCCCTCCTCACGCCGCACGCGTCTTGAACCCTCTCACCGGCGACAT
GATCCGTTTCACGGCGC------------------AGGTCACCGCTGGCGTCAGCACTGGCTTCTCTCCGCACATGCTCG
CCTTGTTCTGCAACTCATGTTGCAAGATGTACATGGCCAGTCCTCACAGCTTTGACGCCCCAGACA------TTGATCCT
TCGGTTTACAGTTTCTTCCGGAGGGCGGTTGGAGGTGGTTTGGTCGGCCATTGGCGA------------------GAATT
AAGCACAACAACTGACATGGCTCT------C-AAGATCTGCGAACTGAGGCAGTTGCTTAGTGTCGATCTGTCAAATTAC
ATTTTCGGTGGTGCTACCAAGATGGGAATCGCAGACGATGCCCTGTGTTTCCCAATGGAATTTGGTGGTCAGATGCTGGT
CGTCATCGAGGGACAAAGCTTCTTCTGGGTTTTAAGATTCCAAGCCGAGAGCGGCATGCTTTTGCCTGCGAAGAGCATCG
GCAACCATGCATTCTTCATTGGTCATCATAGGTGCCTTCCTGTGGATGCTGATATGTTCCCATCAATCGAGTCAGACTGT
ATCTACTATACTGAACACCACGCTTCGTCTGCTCACATCCGGAAGTACAAAATCAAGGAGTGTAAAGCAGAGAGGGTCTC
TGAAGCCGTCGATTTTGTGAAGCAGCGCAAGCAGTTTGTCCTCGTGGGCGAACGTCCTTTCACGATCATCCAGCTTCTGT
CGAGTTACACCATCAGCACCCGGGA-------------------------------------------------------
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---------------------------------------------------------------------GGGATTCTGAA
CTGGCTA------------------GCACTGCTAAACTTGATGT---TTGAGCC-----TATGGTATGCATTGCTTAGAA
AGGTTTGCTCTTTTGTAGATTGTTATTTGGCTATGCCTTCACTTGTTCTGGGCAATA--------GAACC-TAGGTTGTA
TCTTCTGTGATGGAATTACTCTTAGCTATCTTAATTAGGACATGGTATGTACCCAGTGCTACGCTGTTTAGCTTGATGCT
GTTATCTTGTGTGCAATGTGGTTCTTAATTTCTGCAGCAGATGATGTCAGATCAACCTTTTCCCCCCTTTTTCTATATTT
TAGCCCTGCCAGTGAATCTATGAATATATGAAATGCCTCGTTGTTGTCCATAAGCTTTGAA-------------------
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>chr3A_1792
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------------------------------C-AAGATCTACGAAGTGGGGCAGTCGCTTTGCGTTGATCTGTTGAAGTTT
TTCTCCGATGATCCTACTGAGATGGGACTTGCAAACGATGCCCGGTGTTTCCCAATGGAATTCCGTGGACAGAAGCTGGT
CGCCATCAAGGGACAACATTTCTTCCAGGTTTTAAGATT------CGAGAGCGGCGAGCTTTTGTATGTGAAGAGCATCT
TGAACCATGCCATCTTCATTGGTCATCATAGGTGCCTTGTTGTGGATGCTGATATGTTCCCATTGATTGAGGCAAACTGT
ATCTACTACACCGAACACCACGGGTCGTCTGCTCACATCTGGAAGTACAATATCAAGGACCGGAAAGCTGAGAGGATCTC
GGAAGCTGCCGATTTTGTGAAGCGGGACAAGCATTTTCTCCTCATTGGCAACCGTCCTTTCACGATCGTCCAGCTTCTGT
C-------------------------------------------------------------------------------
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-------------------------------------------------AAGCTACACCATCAGCATCCGGGATTCTGAA
CTGGCCTTGCAGCAGACCACACAAGGCGCTGATGAACTGCATGACATTTGAGCCTATCGTATCGTATGCATTGCTAAGAA
AGGGTTCCTGTTTT------------------------------------------------------------------
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>chr3D_1792
GTGTTTA-------------------------------------------------------------------------
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---------------------------------------------------CCAATGGAATTTGTTGGACAGATGCTGAT
CATCATCAAGGGACAACAATTCTTCCATGTCTTAAGATTCAAAACCGAGAGCGCCGAGCTTTTGCATGTGGAGACCATCT
GCAACCATGCCATCTTCATTGGTCGTCATAGGTGCCTTGCTGTGGATGCTCACATGTTTCCATCCATAGAGGCAAACTGT
ATCTACTACACTGAACACCAGGGCTCGTCTGCCCACATCTGGAAGTACAACATCAAGGACCGAAAAGCAGACAGGATCTC
AGAAGCTGTCGATTTTGTGAAGCAGGACAAGCAGTTTGTCCTGATCGGCGACCGTCCTTCCACGATCATCCAGCTTCTGT
CGAGCTACACCATCAGCACCCGGGATTCTGAAATGGCTGGCGCCGTTAAACTTGATGATTGATCCTATGGTATGCATTGC
TTAGAAAGGGTTGCTGTTTTCTAGGTTGTTTATTTTGGTTATGCCTTCAATTGTCCTAGGCAAGAATCTAGGTTGTATCT
TCTGTGATGGAATTACTCTTAGCTATCTTATTAATTAGAACGTGATATGTACCCAATGCTACCCTTAGCTTGATGCTGTT
ATCTTTTGTGCAATGTGGTTCTTACTATCTGCAACAGATAATGTCAGCTCAACCTTTCCCCCCTTTTTCTATATTTAGCC
CTGCAAGTGAATCTATGAACATATCACGTGCCTCATTGTTCTCCATAAGCTTTATAATTTGCAACAGCCTGTTCTCGGCA
AGAAACATGTTTCACATTTGCTTACTGGTTGTCTGTGGAACGACTGTATGCTGCAACTATTTCCTTTTGTAGCTTGTTCA
TTGTTCGATTTCTGGGCATTGCCGCAGAATGGTAACAATTTGTAGCACAACTCATGTCGGGAACTTTGGATGTTCTTTCC
AGCTTGACATGGTTGTTAAGAACTTAAGATGTGCTTTGCTTAGAAAAAAAAATTTGACACAATTTATTGTTGCTGTTTCT
AGATGGATTTTGTAGATTCAGCTATTCACATAGTTTTGCCTGAAAGGTGTTTTATTTTAGCACACACAATATGTTGTTCG
GAGGATACGGGTGTTGATTACACTAACATACCATGAAATTTAATTTTGTGCAATGCTCATCGGCGGGAGATTGCAGTCAA
GAATCAGTAACTGAAATTTGTACCGTCAATGAAAGACAATAGTTGGCAGGGAGTTCAAAATAGTAGCTGCAACTTGGAAC
ATATAAAAGACTGACCTATCTGCGAGAGTGATCCATGGAACGGCCGGTACAAGCACATCCTGTGAGGCCTGTGGTTCCTG
GGTGACCCTGGTTCTTGGGGGGCCAAGTTTGGTGCCTTCTTTGGGTCCTGGTAAGTTGGATCTTCAGCTAACTAACAATT
TTTTGAAATATTTGGGTCCAATTATGCCGAGATAGTAGCGACCATGCCTCTTGGCCTTGTGTCTTAAACTCTTGTCTAAC
TTCTTATTTAATGGATGAGGCAAGTCTTTTGTCTCCGTTTCAACAACAACAACAACAAAAACCACTTGGCATATTTGCTT
TTGCAATTTGTTCTTCGTTGGATCTCCTGGCCGTTACTGAAGAATGGTCTAACAGAGTCTGCAGCACAGCTGTAGCTTGG
AAACTTAAGATGCACTTTGCGCATAAAACTTCCAACACTGTACGCAATTGCTGTGTCTAAATGGGTTTTTCAGATTGAGA
TGTTTACGTAACTTTGCTGGACAGGCACTGTACGCGCACCCACACACGCACACGCTGGCGCTGGACGCTGTTCGCAGGAC
AGACGTGTTGATTAGATCAGATCAGCCATATGATGCATGGAATGATCTGACATGAGCATGATAGTGCAGGTCCAAGTGAT
CAGCCGACGGATATGGCGTTTAAATTGAATCTACTACCAAACCTTGTCCCTGTGATGCCAGGCAAGACGCAAGAGGTCTA
GGCAGATAGTTCAGAATACTAGTAGCTGGAGCATAGACTGACTGACTGACCAGAATACCAGTGGGTGATCCATGGAAGAT
GGAACAGCAGGTGCAAGCACAACTAGTGGCTCTCTGCTCTCACCATGGGCCTATGAATTCTTCTTTAACCTCACTCCAAC
TGTTGATACGATTGTGAGACTTGTTCACTCTGTTTTCTAAAGAAGAAACAGTGCTTCAGTTGAGCTCTTGTGTAGCCGTA
GTTCAACATTCAGCAGCAGCTGTTTCTCATGGTGACATCGATTCTAATGGGCCCGGAGGACCGGGTTGAGGACACCCTGC
TGGATGGTGCCCTGGTGCGTGGGCTCCAGTGCCTTGAGGGCCTGGGTTCCCGGTTGGCCCTGGCTCTTGGGGGCCTGGGC
TGGGCTTGATGACTTGCTCCGGTCCTGCTGAGTTGGGGCTTCAGCTGCGAACTAATGGAAGTTTAAACTTTCTATTTCCT
CTGAAGTTTTCTTTTCATTTTGGTTCTGATTCTGTGAAACTCTGAGCTAGTGTTTCACCTGCAGCTTCTACCTCCTCTGC
TGCTGTTGCTTGCTCCAAGATTGCTTGCTCTGCTGCTGTCCCCGTTGGTAGGAATTAGCCAGAACAACTGACATAGCTCT
CAAGATCTGCGAAATGGGGCAGTCGCTTCGCGTCAATCTGTCAAAGATTTTTCAGGTGATCATACTGAGCTGGGACTTGC
AAATGATGCCCTGTGTTTCCCAATGGAATTCGGTGGACAAATGTTGGTCGTCATCAAGGGACAAAACTTCTTCTGGGTTT
TAAGATTCGAAGCCGAGAGCTTCATGCTTTTACATTTGAAGAGCATCGGCAACAATGCCATCTTCATTGGTCATCATAGG
TGCCTTGCTGTGGACGATGATATGTTCCCATCAATCGAGGCAAAATGTATCTACTATACTGAACACCACGGTTTGTCTGC
TCACTTATGGAAGTACAACATCAAGGACTGAAAATTAGAGAGGATCTCGGAAGCCGTCGATTTTGTGAAGCAGGACAAGC
AGTATGTCCTGGTCAGCAACCGTCCTTTCATGATCATCCAGCTTCTCTCCAGCTACACCATCAACATCCGGGATTCTGAA
CTAGCCTTATAGCAGACCACATTAGGCGCTGATGAACTGGATGACATTTGAGCC-----TATCATATGTATTGCTAAGAA
AGGTTTGTTGTTTT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>SNPs
SSS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS--S--S------S--------S--------S--S-----------------------------S-------------
--------------------------------------------S-----------------S-----------------
-S----------------------------------------------------------------S-------------
--------------------------------------S----S--S----------------S----S------S----
---------SS-S---------------------------------------S-S--S----------------------
------------------------------------------------S-------------------------------
--S------------SSS-SSS--------------S-------------------------------------------
----------------------S-------------S---------------------------------------S---
--------------------------S----SS-S-----S--S--SS----S--------S--------S----S----
------------S-SSS---S----------------------------------S------S-----------S-----
------------------------------------------S-------------------------------------
-SS-S--------------------------S-------S-S--------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------S-----------------------S----
----------S-----------------------S----S----------------------------------------
---------------------------------S--------------------------------------------S-
------------S--------------------S----------------------------------------------
------------------S--------------S----------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
----------------------------S---------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
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---------------S-------------S--------------------------------S---------SS------
--------------------------------------------S-------SS-----------S--------------
------------------------------S----------------S-------------SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_91
-----------------------------------------------------------------------CGAGCCGAA
CCCGTATACTC---------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------
>reverse_1096
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTCAAGCGAAGCAGCAACTT-----
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>forward_92
------------------------------------------------------------------------GAGCCGAA
CCCGTATACTCG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_1103
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GAAGCAGCAACTTCAGCG
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------
>forward_100
--------------------------------------------------------------------------------
CCCGTATACTCGCCGGAATT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>reverse_1634
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAAGGTCACCTGTTCGCTCT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------
>forward_1163
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------CTGAAGTTCTCCCGCCTTGT-------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------
>reverse_5607
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TTGTCATGCCGGTTATGCCT------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
