>input_sequence_55260
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------------ATGGCGCCGGAGTGGGAGGCAGCCTTGGGCATGGAGCTCGGCATGGGCTCGCACTACCACCACGCGCC
GCCATCCGCTGCCGCCTCGCCCATGAACCAC---------CACCACCACCACCACCACTCGGCCTACACCCACTCCCAGC
CCCCGCACCAGTACCATTTCTACGGGGGCGCCGCGGGCGGGGACGG---CACCGCCGACCCCATGCGCGTCGACGAGATG
CTCGACCTCTCCTCACACCTCGGCGCGCACGACTTCTTCTCCGGCGCGAATAATGGCGGCGCCGGCCAGGGCGGCGACAA
CGCGCCGGCCCCGCCTGCGGCTGCTGCGGCCTCCTCGTCGGACCACCAGCACCACCACCCGTCGTCCTTCAACCTCTCCT
TCGCCGACGAGTTTTACCTGCCTGTCCCGGTAATTATTCACTTCAACAT---------------------TCGATCGCGT
GGTTGATCTTAATTCTTGAAGAAATGTGTGAGAAACTGAGAATTAAGCAACGGAAGAAATTGG--------------TGA
TTGAGATCTAGCTAGCCAGCTAGTAA-TAAAAGCTTACTTAAATGCTTGATGTGTACGTGC-TGCAGACTGAGGAAGCCG
CGGAGCTGGAGTGGCTGTCCAACTTCGTGGACGACTCCTACCCGGACATCCCCAACTACCCGCCGGCCGTGCAGGCGGCG
ATGGCGGCCGCC------GCGAGGAA---------------------------CGGGGGCGTCGTGGTGAAGCAGGAGAA
TTCCGCGTCGGCGGCCGCGCCTGGCCGCGGCGCGCGGAGCAAGAGGTCGCGGGCGGCCTCCGCGGCCGCGGCCGCATGGC
ACGCCCTGGCGCCGCGCCA------GCCGTCCCCGTCCTCGTCCTCGTCGTCCTCCGA------------CTCGAAGCCG
GCGCGGTCAGGCGGCGGCGGT---G------GCGTCAAGAAGAGCGGGCTCGTGGTTGGGGCAGCCGAGCTAGGGGGCGG
AGGGGACCAGAACGGCGAGGTGCGTCGGTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGCTGG
GGCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACCGCCCGGCGGCGAGC
CCCACGTTCGTGCTGACGCAGCACTCCAACTCCCACCGCAAGGTGATGGAGCTGCGCCGGCAGAACGAGCTGGTCCACCT
CCGCGGCGGCGTGAGCGGG---GGCGTCGTGTCGGCGTCCTCCGGCTCCGGCGGCGCGGCGGAGCACATGTTCCGCGACT
ACGGCGTGTGCTTACCGACTCGATCGCCGGCCGGATCCAGCAGCCTAGCTAGCTACTAG---------------------
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---------------
>chr5A_1_TraesCS5A01G538600
GGCCATGATGCACGCTGGCAGATCATGTGGCCAGGAGCAGGAGGTTTGGTTCCATTATTCCATCCGAGCGAGTACG----
TAAATTGACAGGACCGTTATGTT--ATGGTGGTGAATGGGCGTGGGCCCACGCACGTCCT------TGGTAAGAAGACGC
TGGCGTCTGACAAACTACAGCTTGTCACTGGAGTGTCCCGCGGC----TGCAACAAA----CCGGCCAGGTGCCCCACCG
TGTACACGATGGTGATAAGGTGGGGGTGATCGATCGA----TATGCCCGTGCCGTGCCTAAGTAAATGTATCAACACATG
CTACGTACGTACAGAG-------------------------------------------------AATTACCACTAA---
-------TAAACCATG------------------------------CACACACGGTGAAAGTA-----------GCTAAT
TTAACTGATCCAGGGAGAGGCTCAAC-----TCAATGATTGTGTGATGGGCGTGAGTGGCCGG----TGGGGCGTGCATG
CATATGCATGGCATATGGTATGCATATGAGTGAGTGAGCCTCTGAGTACGGGCAGTGCAGTGCATGGGCCCTGTTCCTCG
TG----TTGGGT-----TGCACCTAGCTCACTCT----------ACCATGCAGCTGGCGCTAGCCCTGCACACTCACACT
ACACGTCTACACCACGACACAAGCTGCT---TCCTCACTCCT--------------CTGCCAGTGGTAGTAATAATTTAC
CACCATGGCATGGACCTCCCCGGCTAGCTCAGTTCCCCTTTCATGTGCTCATCATGCATCACCTCTCACCCTC--ACCTC
GCCTAGCGC------TAGCTAGCTTGGCTTGCTTTCCTCCTC----TATATTAATGGTTTTGCTTCGGCGGCTTTCCTGT
TACTGGTGCGAGACGCGACTGGAGCTCCCCAGAGCCAAGCCTAGCTTGCCCCCAAGCCAAGCTTAGCCTCTGCCGGCAGC
TACAGC------CACTGTCACACTCTCACTCTCGCTCAGTG---------TACTGCCAC-----------CCCGCCATTA
CTGCGAGCTACTACTAGCTAGCTAGCCACTCCA-----CTCCACTCGCTGCACGTTCCAGTACGTTCCGGTAGTATAATT
AAGCTGGCAGGCATGGCGCCGGAGTGGGAGGCAGCCTTGGGCATGGAGCTCGGCATGGGCTCGCACTACCACCACGCGCC
GCCATCCGCTGCCGCCTCGCCCATGAACCAC---------CACCACCACCACCACCACTCGGCCTACACCCACTCCCAGC
CCCCGCACCAGTACCATTTCTACGGGGGCGCCGCGGGCGGGGACGG---CACCGCCGACCCCATGCGCGTCGACGAGATG
CTCGACCTCTCCTCACACCTCGGCGCGCACGACTTCTTCTCCGGCGCGAATAATGGCGGCGCCGGCCAGGGCGGCGACAA
CGCGCCGGCCCCGCCTGCGGCTGCTGCGGCCTCCTCGTCGGACCACCAGCACCACCACCCGTCGTCCTTCAACCTCTCCT
TCGCCGACGAGTTTTACCTGCCTGTCCCGGTAATTATTCACTTCAACAT---------------------TCGATCGCGT
GGTTGATCTTAATTCTTGAAGAAATGTGTGAGAAACTGAGAATTAAGCAACGGAAGAAATTGG--------------TGA
TTGAGATCTAGCTAGCCAGCTAGTAA-TAAAAGCTTACTTAAATGCTTGATGTGTACGTGC-TGCAGACTGAGGAAGCCG
CGGAGCTGGAGTGGCTGTCCAACTTCGTGGACGACTCCTACCCGGACATCCCCAACTACCCGCCGGCCGTGCAGGCGGCG
ATGGCGGCCGCC------GCGAGGAA---------------------------CGGGGGCGTCGTGGTGAAGCAGGAGAA
TTCCGCGTCGGCGGCCGCGCCTGGCCGCGGCGCGCGGAGCAAGAGGTCGCGGGCGGCCTCCGCGGCCGCGGCCGCATGGC
ACGCCCTGGCGCCGCGCCA------GCCGTCCCCGTCCTCGTCCTCGTCGTCCTCCGA------------CTCGAAGCCG
GCGCGGTCAGGCGGCGGCGGT---G------GCGTCAAGAAGAGCGGGCTCGTGGTTGGGGCAGCCGAGCTAGGGGGCGG
AGGGGACCAGAACGGCGAGGTGCGTCGGTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGCTGG
GGCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACCGCCCGGCGGCGAGC
CCCACGTTCGTGCTGACGCAGCACTCCAACTCCCACCGCAAGGTGATGGAGCTGCGCCGGCAGAACGAGCTGGTCCACCT
CCGCGGCGGCGTGAGCGGG---GGCGTCGTGTCGGCGTCCTCCGGCTCCGGCGGCGCGGCGGAGCACATGTTCCGCGACT
ACGGCGTGTGCTTACCGACTCGATCGCCGGCCGGATCCAGCAGCCTAGCTAGCTACTAGTAAGCAAGCAAGCTTGGAGTC
ACCGATCGACCGACCATGGATGGATATGGAT------GTGGATGATCCACATTAGCGGCACGACGACGATCTGCTTAATT
TTGCATGCAAATTCCTTT--TTCCTTGCTTTCTTC----CGTGTACTATTTCGCGTTGCTTTCTTTCTGTAGTTTATATA
TGGGTCTCATCATC---TTTCTTTTGTCGGAAATAAATAAGGAAATCTGTTCAAAAAC-CCCGGGAATAAGTTGAAAATG
TTG-ATCTTCTGCTTA----ATGTGAGCTGATTGCGTGAGCTTCGTTCTGCACGCACACTGT------------------
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---------------CGACCACTGTGGTGTCAGTGGCGCAGAGTGAAGAGAAGAGTCAGTATTGCATGTGTATCGTACAG
TGGTGGTCATCAGTGGGTAGTAGGAGTACTACGTGGTAGGTCAAGCGAGTGAGCTTGCTTTTTTAAAGGAA---AGGTAA
AGGACGAGTGAGTGAGGCGGGAGGTGCGTCAGCACGTGAGTTGGTTCGTTGGTGGGCTGCAACTTTTGTCAGGCCGGGCG
GGCCGGGAACAATGCTATGTT---CCCC--CTCACCTCACCTCACCTCACGTGATGGCTCCTC---CTCCACTTGCTTCC
TACTACCTTCATTCTATCATGTTTCATCTTT----------TTTCTGTTTTCTTTTCCTCCCACAAGTGATCATTTTCTG
TTCTTGTGCATTGGAATTGGAATTGTCGGTTCATTATTTATGATCAAACCAATCC-ATGTTTAAGACCACGCGCAGTAGG
TTAAAGCGGGTGGCTAGAGAGATTTCATCCAACATGGATGGCAGCATGATCATCACATCGGTCCACCAACTCTGTCGACG
AAGGCATATTGTCTATCCTATATGACTTTATTGTTGCACGTATGCTCGTTTTCTTACTTTTATTTTGCCAGAATGTCCAT
GTTTGCTCGTGTGCATCTTAGCTGTACGGAGGCTGGATGTTGCTCATCTTTCTTTGTATCTGCTTCATGCTACATTTGGA
GTTAATAAAAGCGCC
>chr4D_2
-GCCATGATGCACGCTGGCAAATCATGTGGCCAGGAGCAGGAGGTTTGGTTCCATTATTCCATCCGAGTGAGTACGTACG
TAAATTGACAGGACCGTTATGTT--ATGGTGGTGAATGGGCGCGGGCCCACGCACGTCCT------TGGTAAGAAGACGC
TGGCGTCTGACAAACTACAGCTTGTCACTGGAGTGTCCCGCGGC----TGCAACAAACCAGCCAGCCAGGTGCCCCACCG
TGTAAACGATGGCGATAAGGTCGGGGTGATGGATCGATCGATATGCCCG-GCCGTGCCTAAGTAAATGTGTCAACACATG
CTACGTG----CAGAG-------------------------------------------------AATTACTACGTACGT
ACTAGTCTAAACCATG------------------------------CATGCACGGTGAAAGTAACTACTTACTTGCTAAT
TTAACTGATCCAGAGAGGGG-----C-----TCAATGATTGTGTGATGGGCGTGAGTGGCCGGCCGGTGGGGCATGCAT-
----------GCATATGGTATGCATATGGGTGAGT--------------ACGG---GCAGTGCACGGGCCCTGTTCCTTG
TGCGTGTTGGGTTGCAATGCACCTAGCTCACTCT----------ACCATGCGGCTGGCGCTAGCTCTGCACGCTCACACT
ACACGTCTACACCACGACACAAGCAGCTGCTTCCTCACTCCT----CTGCTAGCTACTGCCAGTGGTGGTAATAATTTAC
CACCATGGCATGGACCTCCCCGGCAAGCTCAGTTGCCCTTTCATGTGCTCATCACGCATCACCTCTCACC---TCACCTC
GCCCATCCCTAGTCTTAGCTAGCTTGGCTTGCTCTCCTCCTC----TATATTAATGGTTTTGCCTCGGCGGCTTTCCTGT
TACTGGTGCGAGACGCGACTGGAGCTCCTCAGAGCCAAGCCTAGCTTGCCCCCAAGCCAAGCTTAGCTTCTGCCGGCAGC
CACAGC------CACTCTCACTCCCGCTCACTGCCACTGCCACTGCCACTACCAGCTCGCTGTACCGCCACCCGCCATTA
CTGCGAGCTACTA---GCTAGCTAGCCACCCCA-----CTCCACTCGCTGCACGCTCCTGTACGTTCCGGTAGTATAATT
AAGCTGGCAGGCATGGCGCCGGAGTGGGAGGCAGCCTTGGGCATGGAGCTCGGCATGGGCTCGCACTACCACCACGCGCC
GCCATCCGCCGCCGCCTCGCCCATGAACCAA---------CACCACCACCACCAC---TCCGCATACTCCCACTCCCAGC
CCCCGCACCAGTACCATTTCTACGGGGGCGCCGCGGGCGGCGACGG---C---GCCGACCCCATGCGCGTCGACGAGATG
CTCGACCTCTCCTCCCACCTCGGCGCGCACGACTTCTTCTCCGGCGCGAATAATGGCGCCGC------------CGACAA
CGCGCCGGCCCAGCCCGCGGCTGCTGCGGCCTCCTCGTCCGACCACCAGCACCACCACCCGTCGTCCTTCAACCTCTCCT
TCGCCGACGAGTTTTACCTGCCTGTCCCGGTAATTACTTACTTCAACGT---------------------TCGATCGCGT
GGTCGATCTTAGTTCCTGAAGAAATGTGTGAGAAACTAAGAATTAAGCA-CGGAAGAACTGGGTG------ATGAGATGA
TTGAGATCTAGCTAGCCAGAG----------CACTTACTTACATGCTTGATGTGTACGTGC-TGCAGACTGAGGAAGCCG
CGGAGCTGGAGTGGCTGTCCAACTTCGTGGACGACTCCTACCCGGACATCCCCAACTACCCGCCGGCCGTGCAGGCGGCG
ATGGCGGCCGCC------GCGAGGAA---------------------------CGGCGGCGTCGTGGTGAAGCAGGAGAA
TTCCGCGTCGGCGGCCGCGCCTGGCCGCGGCGCGCGGAGCAAGAGGTCGCGTGCGGCCTCCGCGGCCGCGGCAGCGTGGC
ACGCCCTGGCGCCGCGCCA------GCCGTCCCCGTCCTCCTCCTCGTCATCCTCCGA------------CTCGAAGCCG
GCGCGGTCAGGCGGCGGCGGCGGCG------GCGTCAAGAAGAGCGGCCTCGTGGTCGGGGCGGCCGAGCT---GGGCGG
AGGGGAGCAGAGCGGCGAGGTGCGCCGGTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGCTGG
GCCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACCGCCCGGCGGCGAGC
CCCACGTTCGTGCTCACGCAGCACTCCAACTCCCACCGCAAGGTGATGGAGCTGCGCCGGCAGAACGAGCTGGTGCACCT
CCGCGGCGGCGTGGGCGGG---GGCGTCGTGTCGGCGTCCTCCGGGTCCGGCGGCGCGGCGGAGCACATGTTCCGCGACT
ACGGCGTGTGCTGAACTGCCGACTCGCCGCACGGATCGAGCAGCCTAGCTAGCTAGC---AAGCAAGCAAGCATG-----
---GACCGACCGACCATGGATGGATACGGAT------GATCCG-------ATTAGCGCCACGACGACGATCTGCTTAATT
TTGCATGCAAATTCCTTTTTTTCCTTGCTTTCTTC----CGTGTACTATTTCGCGTTGCTTG-TTTATGTAGTTTATATA
TGGGTCTCATCATC---T---TTTTGTCGGAAATAAATAAGGAAATCTGTTCAAAAAA-CCCGGGAATAAATTGAAAATG
TTTGATCTTTTGCATTATCTATGTGAGCTGGTTGCGTGAGCTTCGTTCTGCACGTACACTGT------------------
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-----------CTGTCGATCACTGTGGTGTCAGTGGTGCAGAGTGAAGAGAAGAGTCAGCACTGCATGTGTATCGTACAG
TGGTGGCCATCAGTGAGTAGC--------AGGTCAAGCG----AGCGAGCGAGGTTGCTTTTTTAACGGAAGAAAGGTAA
GGGACGAAGGA---------GAGGTGCGTCAGCACGTGAGTTGGTTCGTTGGTGCGCTGCAACTTTTGTCAGGCCGGCCG
GGCCGGGAACAATGCTATGTCCCCCCCC--CTCGCCTCACCTCACCTCACGTGATGGCTTCTCCTCCTTCACTTGCTTCC
GACT----------------------------------------------------------------------------
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---------------
>chr4B_4
---CATGATGCACGCTGGCAGATCATGTGGCCAGGAGCAGGGGGTTTGGCTCCATTATTCCGTCCGAGTGA----GTACG
TAAATTGACAGGACCGTTATGTGTGATGGTGGTGAACGGGCGTGGGCCCACGCACGTCGTCCTTGGTGGTAAGAAGACGC
TGGCGTCTGACAAACTACAGCTTGTCACTGGAGTGTCCCTGGGCTGCATGCAACAAACCAGCCCGCCGGGTGCCCCACCG
TGTACACCATGGTGATAAGGTGGGGGTGATCGGTCGA----TATGCCGG-GCCGTGCCCAAGTAAATGTATCAACACATG
CTTCGTTCTAAAATAGATGACTCCACTTTGTATCGATTCAACTTTGTACTAACTTTATACTACTAAATTACTACTTACCA
CATATTTGAGTCATCTATTTTGAAAGGAGGGTACTATGTACTAAACCATGGATGGTGAAAGTAACTAGTA----GCTAAT
TTAACTGATCCAGAGAGAGG-----CTCAAGTCAATGATTGTGTGATGGGCGTGAGTGGCCGGCCGGTGGGGCATGCAT-
----------GCATATGGTATGCATATGGGTGAGTGAGCCTCTCTGAGTACGG---GCAGTGCATGGGCCCTGTTCCTTG
TG----TTGGGTTGGGCTGCACCTAGCTCACTCTACTCGTCTACACCATGCAGCTGGCGCTAGCTCTGCACGCTCACACT
ACACGTCTACACCACGACACAAGCTGCTGCTTCCTCACTCCCTCAGCTGCTAGCTACTGCCAGTGGTAGTAATAATTTAC
CACCATGGCGTGGACCTCCCCGGCAAGCTCGGTTGCCCTTTCATGTGCTCATCATGCATCACCTCTCACCCTCTCACCTC
GCCTAGCTAGG----TAGCTAGCTTGGCTTGCTCTCCTCCTCGCTCTATATTAATGGTTTTGCCTCGGCGGCTTTCCTGT
TACTGGTGCGAGACGCGACTGGAGCTCCCCAGAGCCAAGCCTAGCTTGCCCCCAAGCCAAGCTTAGCTTCTGCCGGCAGC
CACAGCCACTCTCAGTCTCACTCCCGCTCACTGCCACTACCACCTCACTCTACTGCCAC-----------CCCGCCATTA
CTGCGAGCTACTA---GCTAGCTAGCCACCCCACTCCACTCCACTCGCTGCACGCTCCTGTACGTCCCGGTAGTATAATT
AAGCTGGCGGGCATGGCGCCGGAGTGGGAGGCGGCCTTGGGCATGGAGCTCGGCATGGGCTCGCACTACCACCACGCGCC
GCCATCCGCCGCCGCCTCGCCCATGAACCACCACCACCACCACCACCACCACCAC---TCCGCATACTCCCACTCCCAGC
CCCCCCACCAGTACAATTTTTACGGGGGCGCCGCGGGCGGGGACGGCGCC---GCCGACCCCATGCGCGTCGACGAGATG
CTCGACCTCTCCTCCCACCTCGGCGCGCACGACTTCTTCTCCGGCGCGAACAATGGCGCCGC------------CGACAA
CGCGCCGGCCCCGCCCGCGGCTGCCGCGGCCTCCTCGTCCGACCACCAGCACCACCACCCCTCGTCCTTCAACCTCTCCT
TCGCCGACGAGTTTTACCTGCCTGTCCCGGTAATTACTTTCTTCCTTCAACATCCGCAGTCAATTGTTGCTCGATCGCGC
GCTCGATCTCAATTCCTGAAGAAATGGGA--------GAGAATTAAGCAGCTCGATCAAGAACTGAGAGTAATGAGATGA
TTGAGATCTACTACCCATATAGCTAGCTAAACACTTAACTAATTGGTTGATGTGTACGTACGTGCAGACTGAGGAAGCCG
CGGAGCTGGAGTGGCTGTCCAACTTCGTGGACGACTCCTACCCGGACATCCCCAACTACCCGCCGGCCGTGCAGGCGGCG
ATGGCGGCCGCC------GCGAGGAA---------------------------CGGCGGCGTTGTGGTGAAGCAGGAGAA
TTCCGCGTCGGCGGCCGCGCCAGGCCGCGGCGCGCGGAGCAAGCGCTCGCGGGCGGTCTCCGCGGCCGCGGCCGCGTGGC
ACGCCCTGGCTCCGCGCCA------GCCCTCCCCGTCCTCCTCCTCGTCGTCCTCCGA------------CTCCAAGCCG
GCGCGGTCAGGCGGCGGCGGCGGCGGCGGAGGCGTCAAGAAGAGCGGCCTCGTGGTCGGGGCGGCCGAGCTAGGGGGCGG
CGGGGACCAGAGCGGCGAGGTGCGCCGGTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGGACGGGGCCGCTGG
GCCCCAAGACGCTGTGCAACGCGTGCGGGGTGCGGTACAAGTCGGGGCGGCTGGTGCCGGAGTACCGCCCGGCGGCGAGC
CCCACGTTCGTGCTGACGCAGCACTCCAACTCCCACCGCAAGGTGATGGAGCTGCGCCGGCAGAACGAGCTGGTGCACCT
CCACGGCGGCGTGGGCGGGGCCGGCGTCGTGTCGGCGTCCTCCGGCTCCGGCGGCGCGGCGGAGCACATGTTCCGCGACT
ACGGCGTGTGCTGACCGGCCGACTCGCCGGCCGGATCCAGCAGCCTAGCTAGCTACTA----------AAGCTTGGAGTC
ACCGATCGACGGACCATGGATGGATATGGATATGGACGATCCG-------ATTAGCGCCACGACGGCGATCCGCTTAATT
TTGCATGCAAATTCCTTTTT--CCTTGCTTTCTTCCGTACGTGTACTATTTCGCGTTGCTTG-TTTCTGTAGTTCATATA
TGGGTCTCATCATCTTTT---TTTTGTCGGAAATAAATAAGGAAATCTGTTCAAAAAAACCCGGGAATAAATTGGAAATG
TTC-ATCTTTTGCATT----ATGTGAGCTGATTGCGTGAGCTTCGTTCTGCACGTACACTGTCTATCGAAAAAAAATCCT
ATGCGACCTGGTCGTATACTTCTAATCTGGAGACCCATTCCGTTGAGTGACACCTGGCAGTACTAATCTCAACGCAGCAA
GGAGCTTCTTCTTAGTCTGAATCTCAGTTGTGAAATCCCGACTGTCACTGCCAGCCGCCGGTACAGCCGCACACCTCGAC
GCCGGCGCGGATTTTCCCCTGGCCACAACACGTTGGATGATTGCTCTGTCGCTCGCGGCCATACTCCTCGATGCCGGCGC
AATTACGACGCTTGCCCCTGTTCGGTCGCGGCCAGTATCCTCGACGCCGGCGCAACTCCGCTGCTCGCCGGGGCCTCGCG
GATGCAGCAGCAACTGAACCTGGCTGGAACGCATGAATTCACGGTGGTGTAGAACAAGACCATCTCCGGCATCCACAAGA
AAAAACACAAACCAGTCAGCGATCAGTGTTGCTAATCTCCGGTGAGAAACCAACGGGCATCCTCAAGAGAAACTTTCAGC
TTGTCACCCATCTCCGGTGAGATTCGCAGGCGGAAGACGCTCACACAACCCACCTACGTCGGTATAGAAAAAAAAATCCT
GCCGTGCCGGAGGAAGCTCGCCGCCGTGCGGAATTCTAATCGACATGGGGATTTCGCAGTGGAGAAGAAGACGTTGTTTT
TTTCTTTGTTGCTTTGAGATTCGTAAATCCACGTGTCAGCTGGTCGATGGGGTCTCATGAGATGAACCGTACGACCAGGT
CGATGGGGTCCCTGTCGATCACTGTGGTGTCAGTGGTGCAGAGGGAAGAGAAGAGTCAGTACTGCATGTGTATCGTACAG
TGGTGGCCATCAGTGAGTGAGTACTGGGTAGGTCAAGCG----AGCGAGTGAGCTTGCTTTTTTAACGGAA---AGGTAG
AGGACGAGTGAGTGAGGGGGGAGGTGTGTCAGCACGTGAGTTGGTTCGTTGGTGGGCTGCAACTTTTGTCAGGCCGGCCG
GGCCGGGAACAATGCTATGTCCCCCCTCAGCTCACCTCACCTCACCTCACGTGATGGCTCCTCTTCCTCCACTTGCTTCC
TAGAGTAGTACTCTACTTCCTTCTAGTATCACGTTTCACTATTTCTGTTTTCTTTTCCTCCCACAAGTGATCATTTTCTG
TTCTTGTGC------ATTGCAATGGTTGGTTCATTATTTACGATCGAACCAAACCGATGTTTAAGACGGTGTGCAGTAGG
TTGACGTGGATGGCCACAGAGATTTCATCCAACATGGGTGGCAGCATCATCATCAGATCGGTCCAC--------------
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>chr1D_1550
A-------------------------------------------------------------------------------
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----------------------------------------------------TGTGTGTGT-TTCAGAGCGAGGAAGCTG
CGGAGCTCGAATGGCTATCCAAGTTCGTGGACGACTCCTACTCGGACATGCCGAATTACTCATCGGCCGCGCATGCGGCA
ATGGCGGCGGCTAACGCGGCGAACAACGGCGGTGGCAGCTCGGCTGGTCAAGACAGCTGCGTCACAGCGGT---------
------------------GCCAGGCCGCGGAGCGCGAAGCAAGCGGTCGCGCGCGAGCGCCGCGGCCGCCGCCGCATGGC
ACTCCCTCATGCCGCACCCGCCTTCGCAGCCATCGCCCTCGTCCTCGTGTTCATCGTCCGACTTCCCGTCCTCAACGACG
GCACGACCTAGCGGCTCCAACTGCGGCGGTCGCGGCAAGAAGCATGGACCCGTTGCCGGCGCGGAGGTGGGCCTGGT---
---------GGAGGGCGGCGTGCGGCGCTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGAACGGGGCCCCTGG
GGCCCAAGACGCTGTGCAACGCGTGCGGTGTGCGGTTCAAGTCTGGACGGCTGGTGCCGGAGTACCGGCCGGCGGCAAGC
CCCACGTTCCTGCTGACACAGCACTCCAACTCTCACCGCAAGGTCATGGAGCTGCGCCGCCAGAAGGAGCTCGTTCTCAT
CCGCGGCAGC----------------------------------------------------------------------
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>chr1B_1550
A-------------------------------------------------------------------------------
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----------------------------------------------------TGTGTGCGT-TTCAGAGCGAGGAAGCCG
CGGAGCTCGAATGGCTATCCAAGTTCGTGGACGACTCCTACTCGGACATGCCGAATTACTCATCGGCCGCGCATGCGGCA
ATGGCGGCGGCTAACGCGGTGAATAACGGCGGTGGCAGCTCGGCTGGTCAAGACAGCTGCGTCACAGCGGT---------
------------------GCCAGGCCGCGGAGCACGAAGCAAGCGGTCGCGCGCGAGCGCCGCGGCCGCCGCCGCATGGC
ACTCCCTCATGCCGCGCCCGCCTTCGCAGCCATCGCCCTCGTCCTCGTGTTCCTCGTCCGACTTCCCGTCCTCAACGACG
GCACGACCTAGCGGCTCCAACTGCGGCAGTCGCGGCAAGAAGCAGGGACCCGTTGCCGGCGGGGAGGTGGGCCTAGT---
---------GGAGGGCGGCGTGCGGCGCTGCACGCACTGCGCGTCGGAGAAGACGCCGCAGTGGCGAACGGGGCCCCTGG
GGCCCAAGACGCTGTGCAACGCGTGCGGCGTGCGGTTCAAGTCAGGTCGGTTGGTGCCGGAGTACCGGCCGGCGGCAAGC
CCCACGTTCCTGCTCACACAGCACTCCAACTCTCACCGCAAGGTGATGGAGCTGCGCCGCCAGAAGGAGCTCGTTCTCAT
CCGCGG--------------------------------------------------------------------------
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>chr1A_1564
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----------------------------------------------------------------CAGAGCGAGGAAGCCG
CGGAGCTCGAATGGCTATCCAAGTTCGTGGACGACTCCTACTCGGACATGCCGAATTACTCATCGACCGCGCATGCGGCA
ATGGCGGCGGCTAACGCGGCGAACAA---------------------------CAGCTGCGTCACAGCGGA---------
------------------GCCAGGCCGCGGAGCGCGAAGCAAGCGGTCGCGCGCGAGCGCCGCGGCCGCCGCCGCATGGC
ACTCCCTCATGCCGCACCCGCCTTCGCAGCCATCGCCCTCGTCCTCGTGTTCCTCGTCCGACTTCCCGTCCTCGACGACG
GCACGACCTAGCGGCTCCAACTGCGGCAGTCGCGGCAAGAAGCAGGGACCCGTCGCCGGCGGCGAGGTGGGCCTGGT---
---------GGAGGGCGGCGTGCGGCGCTGCACGCACTGCGCCTCGGAGAAGACGCCGCAGTGGCGAACGGGGCCGCTGG
GGCCCAAGACGCTGTGCAACGCGTGCGGCGTGCGGTTCAAGTCAGGACGGCTGGTGCCGGAGTACCGGCCGGCGGCAAGC
CCCACGTTCCTGCTGACGCAGCACTCCAACTCTCACCGCAAGGTGATGGAGCTGCGCCGCCAGAAGGAGCTCGTTCTCAT
CCGCGGC-------------------------------------------------------------------------
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>SNPs
S-------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------------------------------S------------------------------
------S-SS-------------------------------------------------------------S---S----
------------------------------------------------SS------------------------------
-------------S------SSSSS------------------------------------------------S-----S
SSSSSSSSSS------------------S--------------SS-SSSSS-SSSS----------------------S-
----------------------------------------------------------------S------S--------
--------------------------------------------------------------------------------
------------------------S---------S---------------------------------------------
-------S-------------------------S-----------------------------S----------------
-------------------------------------------------------------------S------------
S---------------S----S-S-S-S-S--SS-S-S-SS---------------------------------------
-------------SSS-------------S------------------------S---S---------------------
--------------------------------------------------------------------------------
---------S---------------------------------------------SSS--S--S---S------------
--------------------------------------------------SSS---------------------------
--------------S-------------------------------------------S---SSSSSSSSSSSS------
---------------S-----------------------S----------------------------------------
------------------------------------S-S--------S--------------------------------
---S-----------S---------------------------------S----------S-------------------
-------------------SSSS--S-----SS-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
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--------------------S--------------------------S--------S-----S-----------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
-------------S------------------------------------------------------------------
------------S----S-SSSS-----------------------------------SS--------------------
--------------------------------------SSSSSSSSSSSS-------S----------------------
-------------------------------------------------------------SS-----------------
------------------SSS------------------------------------S------------S---------
--S------S---S-S--------------------------------------S-------------------------
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------------------S-----------------S------------------------S------------------
------S--------S----SSSSS-SSSSSSSSSSSS-SSSS-----------------------S-------------
-----------------S-----------------------------------------------------------S--
--------------------S-----------------------------------------------------------
----SSSS-SS-SSSS-SSSS-S-SS-S-SS-------------------------------------------------
---------SSSSSS----S---S--S-------------S----S------S--------------SSS-S--------
--S-S-S--S----S-S--------------------S---------S-------S----------SSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_1062
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--CAGCTACAGCCACTGTCACA----------------------------------------------------------
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>reverse_3795
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----------------------------------GGTAGGTCAAGCGAGTGAGC--------------------------
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---------------
