>input_sequence_55240
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---------------------------------------------------------------ATGGACAGGCTTATCTC
TTCGCCGCTCCACCTCACCCGCGCGCCCGCCTCCTCCTCCGCC---T------CCAGGCCCCGCGCCGGCGGCCACCACC
ACCTCCTCCCCGCCACCGCCGCGCCAAGGTCCTTCGCGCCCCTCCACGGACTCAGGCTGCATCCTCTGGCGCCGCTCCTC
CCCAGGCCGCCCCCGTCCCTCCTCGCCGCGGCCTCCGCCTTCTCCCGCGCCGACGCCGTCAATCCCGCGCCACCGGAACC
AGATGACGAGGCCGCCGACGCCTCTGCGCAGGCTCCGGCCACCGGAGTCACCCGCTTCTTCCAGAAGGTCAGTGCGCCAG
TGCTCTGCTCTG-----TTTCCTTCATTGCCTGAACCTGAATTCTCGGCCACAAACGAACGATGAGCCAGAGGTGGAACG
GATGATAAGGCGGCGAAATTTACGTTCTTGCCGGGAATAATCCACAG------------------GT-------------
-----CGCCTTGGTGGCGGCGCTGGTGGTGGCGGCAGTCGGGCCGTCGTCCATGGTGCCGCCGGCGCTGGCCTCGGCGCT
GCACAACCACTCCCACTCGGCGGCCGTCACGGCGGGCCGGAGCATCTTCAAGTCGGAGCTGCTGGGCAGCGCGTGGACGG
GGTTCCTGGCCGGCTGCCTGCACACGCTCTCGGGCCCGGACCACCTGGCCGCGCTGGCGCCGCTCTCCATCGGGCGGTCG
CCGGTGGAGAGCGCGGCGGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATGTTCGGCCTGCTCTTCCT
CGGCCTCAAGGACCGGCTCCACATCGAGGTGCTCCGCACCTGGGGCACCCGCGTCGTCGGCCTCACCCTGCTCGTCATCG
GCGCCATCGGCATCCGGGAGGCGACGCAGGCGGCGCCCTGCGTGGCCGCCGCGCTGGAGGGCGGCACCAGCGCGCACCAG
CACGGCGGCAACAACAGCGACGCGCTGGAGAAGGCGCTGCTGGGCGCCGGCGGCAAGAAGAAGGAGATCAGCTTCGCGAC
GTTCGCGACGGGGATCGTGCACGGGCTGCAGCCGGACGCGCTCATGATCATCCTGCCGGCGCTGGCCATGCCGTCGCGCG
CCGCGGGGGGCGCCTTCCTCGGCATGTTCCTCGTGGGCACCGTGCTGTCCATGGCCAGCTACACCGTGCTCATCGGCACC
TGCACCGAGGCGCTCAAGGAGAGGGTGCCCCGGATCACAGAGAAGCTCACCTGGGCGGCCTCCCTCGTCGCCATCTCCAT
GGGGGTCGCCATCATCGTCAGCGAGTCCTTCGGGGTGAGCTTGTACTGA-------------------------------
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>chr7A_1_TraesCS7A01G049500
TCAATATTATCGGTATGATTCTCCATCTATGTATGTATGGAAGTGGCATTTGATATACTCATACTTCACCTGGGTGCTTC
ATGGTGGTCACCACTGACATATAAAGCTTTTGCAATTATGAAGCTCTTTTTGCTTGTGCAGGGGATATCAGATAGTGTAT
GGGTTTGTTTGGATGGCAGCCGAGAGTTGCCATGCCAAACATTTGACATTGACCGCCAAAGTAGACACACATTTGGATTG
CCGCAACCTTTTTCTTTTGATTCCAATATTTTAGTATTTCAATTCACAACTAGTTCACTTTCTCTCCTTTGGGTGATAAC
CGAATGGCCCCTATGTGTTTTGATGCAACAACTGGATTGATTGCACCCTACAACATCTAGTGGGCAAACCCGTTGGGGGG
AGGGAGAATATTTCCCGTCGGAGTCCGCTAGCTGGGACAACAGAAAGGACAACCGATCTTCTCTAGATAAGAGAGTCGTA
GGTCTTTACTTCTTGACATCTTCATGAAATGCGGGAACTCATAAGCAGCAATAACA-----------GAGCCTATCAGAT
ACAAA-TGCAGATTGCTCATGTGAAATAATCTCCGATAAAGCATTTTTCAACTGCTTAGCATGCACTTTAAAGGTTTTTA
AAAGGTTACGTTGCACAAACTCATACTGACTTTTTTAGGGTAATATGGAATTTTTTAGGGGTATACGTGGACTTTTTTTA
GAATT-ATACGGACCCTCTTTTGGGTATATGAACTTTTTTTTGAGGGGTA------TATGAACTTTTTGTTAGAAAAGGA
TATCTTTCCTGGTCCACAAAGAACAAACTGAAAATTAGTTTCTCACTGCCAAAAAGGCCCATCTCAGCCCCACAACAGTT
T--GACATAGCCGCCCAACCCGGCCCGTCCGAAGCCCCCCAAAATATGTCTTCAATTCTTATTTCATTTTTG--ATTTTG
AAACTTATTATTATAATCTGTCTTCCGTTGAGCCACACCGAAACCCCAGCACGAGCACCCGCAATGGACAGGCTTATCTC
TTCGCCGCTCCACCTCACCCGCGCGCCCGCCTCCTCCTCCGCC---T------CCAGGCCCCGCGCCGGCGGCCACCACC
ACCTCCTCCCCGCCACCGCCGCGCCAAGGTCCTTCGCGCCCCTCCACGGACTCAGGCTGCATCCTCTGGCGCCGCTCCTC
CCCAGGCCGCCCCCGTCCCTCCTCGCCGCGGCCTCCGCCTTCTCCCGCGCCGACGCCGTCAATCCCGCGCCACCGGAACC
AGATGACGAGGCCGCCGACGCCTCTGCGCAGGCTCCGGCCACCGGAGTCACCCGCTTCTTCCAGAAGGTCAGTGCGCCAG
TGCTCTGCTCTG-----TTTCCTTCATTGCCTGAACCTGAATTCTCGGCCACAAACGAACGATGAGCCAGAGGTGGAACG
GATGATAAGGCGGCGAAATTTACGTTCTTGCCGGGAATAATCCACAG------------------GT-------------
-----CGCCTTGGTGGCGGCGCTGGTGGTGGCGGCAGTCGGGCCGTCGTCCATGGTGCCGCCGGCGCTGGCCTCGGCGCT
GCACAACCACTCCCACTCGGCGGCCGTCACGGCGGGCCGGAGCATCTTCAAGTCGGAGCTGCTGGGCAGCGCGTGGACGG
GGTTCCTGGCCGGCTGCCTGCACACGCTCTCGGGCCCGGACCACCTGGCCGCGCTGGCGCCGCTCTCCATCGGGCGGTCG
CCGGTGGAGAGCGCGGCGGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATGTTCGGCCTGCTCTTCCT
CGGCCTCAAGGACCGGCTCCACATCGAGGTGCTCCGCACCTGGGGCACCCGCGTCGTCGGCCTCACCCTGCTCGTCATCG
GCGCCATCGGCATCCGGGAGGCGACGCAGGCGGCGCCCTGCGTGGCCGCCGCGCTGGAGGGCGGCACCAGCGCGCACCAG
CACGGCGGCAACAACAGCGACGCGCTGGAGAAGGCGCTGCTGGGCGCCGGCGGCAAGAAGAAGGAGATCAGCTTCGCGAC
GTTCGCGACGGGGATCGTGCACGGGCTGCAGCCGGACGCGCTCATGATCATCCTGCCGGCGCTGGCCATGCCGTCGCGCG
CCGCGGGGGGCGCCTTCCTCGGCATGTTCCTCGTGGGCACCGTGCTGTCCATGGCCAGCTACACCGTGCTCATCGGCACC
TGCACCGAGGCGCTCAAGGAGAGGGTGCCCCGGATCACAGAGAAGCTCACCTGGGCGGCCTCCCTCGTCGCCATCTCCAT
GGGGGTCGCCATCATCGTCAGCGAGTCCTTCGGGGTGAGCTTGTACTGAACTACTACTGATCATCATCATCATCATCCCC
TGCGCCTGCAACAACAACAAC------GACGACGATATTGCCTTGCTTCGAATCGAACGAATGAACCCGCCATGGAAATT
TTGCTACGTCACGTCCTTCCTCTTGAGATCGAGCAGCAGCAACTAGGATGTAGTTTACGATTCAAGAAAGGAAATCTTAT
ATTAGAATTTG-CTTAGCTGCTGTTGAGGCGAGTGGCAATTTGCCGCCATTGTTGTTATGATGATCTGGAATTCTGGATG
CACTACCAACTTTACTTGAGCGATTGGCCGGAAGAAATTCAGGAAATGACCCGTTTCCTATTGTGATGAT------TGCT
GGTTGATTGGTGTTTTTGTACCGTGATGAGGTTTATCATGGACCAACCTTAGCACACTGATTCTGAACGTAGACTTAG--
-----------CTTCAAATTTCGAAGGTTTGTGCTGGCTTAAAATTTGTACTTAC-TCATTTTTCTTGTCTCTGATACGG
AAAGG----GAGAAAGGCTTGGTGGAACAAAAAAAATG--AGAGTTAAAATCCGTATAGATGACATGATGTATACTCCGC
CCATCACATATGCCCGTGCGTTGCAACGGGAGAGCTATTTCTTTGCGAGAAGCAATGGGAGAGATAATTGATTTGTCCAC
CAAAAACGATCTCCATAGTGGTGTGATAGAGAGGAGTTGTGGTCTTCTCGCGGGTCATGTTTGTCCCATGAGATCTTGAT
ATTGGTGGGGTTAGTTGGCGTGGAGGCAACCATGCAACACGTGCCTTTTTTTCCTCTGGGTCCGCCTCTGTCTCGGGGTT
GTGTCTGCCTCCTCATGTGGTAGCTATGCGGTGACCTTCAAGGCGCGGTTGTTTTGACCACTCTCTCTTACGATTGCCCG
GATGGATTACTAATTGTAGCGCATAAATCCCGTTTTATTAGCATATTTAGCGCATAACCAGACATCATTGTCCCTTCTTT
ACTAGGGTTTATTTTTTATTTTATTTTAGCACTAACGTGCCC
>chr4A_464
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---------------------------------------------------------------TAGATAACAGAGTCAAA
GGTCTTTACTTCTTGACATCTTCATGAAATGCGGGTACTCATAAGCAGCAACAACATTACTCGTAATGAGCCTTCCAGAT
ACAAATTGCAGATTGCTCATGTGAAATAATCTCCGATAAAATATTTTTCAACTGGTTATCATGCATTTTTAAATAATATT
AAAGGTTACACTGCACGAACTAAAATGGACTTATTAAGGGTAATATGGAC------------------------------
--------------------------------------TTTTTAGGGGTA------TATTGACTTTTT-TTAGAAAAGGA
TACTTTTCCTGGTGCACCAAGAAGAAACTAAAAATTTGTTTCTCACTCCCAAAAAGGCCCTTCCCAGCCCAACAACAGAT
GACGACATAGGCGCTCAACCCGGCCCGTCCTAAGCCCGCAAAA-TTTGTCTTCTATTTTTATTTCATCTTTTTTATTTTG
AAACTT---ATTATTATCTGTCTTCCGTTGAGCCACACCGAAACCCCAGCACGAGCACCCGCAATGGACAGGCTTATCTC
TTCGCCGCTCCACCTCACCCGCGCGCCCGCCTCCTCCTCCGCCGCCT------CCAGGCCACGCGCCGGCGGCCACCACC
ACCTCCTCCCTGCCGCCGCCGCGCCAAGGTCCTTCGCGCCCCTACACGGCCTCGGGCTGCACCCTCTCGCGCCGCTCCTC
CCCAGGCCGCCCCTGCCCCTCCTCGCCGCGGCCTCCGCCTCCTCCCGCGCCGACGCCGTCAATCCCGCGCCACCGGAACA
AGATGACGAGGCCGCCGT---------GCAGGCTCCGCCCAACGGATTCACCCGCTTCTTCCAGAAGGTCAGTGCGCCAG
TGCTCTGCTCTGCTCTGTTCCCTCCATTGCCTGAACCTGAATTCTCGGCCACAAACGAC----GAACCAGACGTGAAATG
G--GATAAGGCGGCGAAATTCACGTTCTTCCGCGCGGAAATCTGCAGGTCGCGTCGGCCGCGGCTGT-------------
-----CGCCTTGGTAGCGGCGCTGGTGGTGGCCGCAGTCGGGTCGTCGTCCATGGTGCCGCCGGCGCTGGCCTCGGCGCT
GCACGGGCACTCGCACACGGCGGTCGTCACGGCGGGCCGGAGCATCTTCAAGTCGGAGCTACTGGGCAGCGCGTGGACGG
GGTTCCTGGCCGGCTGCCTGCACACGCTCTCGGGCCCGGACCACCTGGCCGCGCTGGCGCCGCTCTCCATCGGGCGGTCG
CCGGTGGAGAGCGCGGCGGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATGTTCGGCCTGCTCTTCCT
CGGCCTCAAGGACCGGCTCCACATCGAGGTGCTCCGCACCTGGGGCACCCGCGTCGTCGGCCTCACCCTGCTCGTCATCG
GCGCCATCGGCATCCGGGAGGCCACCCAGGCGACGCCCTGCGTCGCCGCCGCGCTCGAGGGCG------GCGCGCACCAG
CACGGCGGCAACAACAGCAACGCGCTGGAGAAGGCGCTGCTGGGCGCCGGCGGCAAGAAGAAGGAGATCAGCTTCGCGAC
GTTCGCCACGGGGATCGTGCACGGGCTGCAGCCGGACGCGCTCATGATCATCCTGCCGGCGCTGGCCATGCCGTCGCGCG
CCGCGGGGGCCGCCTTCCTCGGCATGTTCCTCGTGGGCACCGTGCTGTCCATGGCCAGCTACACCGTGCTCATCGGCACC
TGCACCGAGGCGCTCAAGGAGAGGGTGCCCCGGATCACGGAGAAGCTCACCTGGGCGGCCTCCCTCGTCGCCATCTCCAT
GGGGGTCGCCATCATCGTCAGCGAGTCCTTCGGGGTGAGCCTGTACTGAACCACTT------ATCATCATCGTCCTCCCC
TTCGCCTGCAACAACAACAACAACGACGACGACGACATTGCCTTGCTTCGAATCGAACGAATGAACCCGCCATGGAAATT
TTGCTACGTCACGTCCTTCCTCTTGAGATCGAGCAGCAGCAACTAGGATGTAGTTTACGAATCAAGAAAG-AAATCTTAT
GTTAGAATTTGCCTTAGCTGCTGCTGAGACGAGTGGCAGTTTGCCGCCATTGTTGTTATGATGATCTGGAATTCTGGATG
CACTACCAACTTTACTTGAGCGATTGGCCGGAAGAAATTCAGGAAATGCCCCGTTTCCTATTGTGATGGTTGCTGCTGCT
GGTTAATTCTCGTTTTTGTACCGCGACGAGGTTCTTCATGGACCAACCTTAGCACATTGTTTCTGAACAGACCCTTCTAT
-----AGTGTTCTTCAAATTTCAGAGGTTTGTGGTAGCTTAAAATTTGTACTTGTTTCATTTCTCTTGTCTCTGATACGA
AAGGGA----AGAAAGGCTTGGTGGAACAAAAAAAATGGCAGAGTTAAAATCCATACAGTGA------------------
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>chr7D_695
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------------------------------------------------------------------GTGGACTTTTTTTT
AGACAAATATGGACTTTTTTTACGGACTATGGACTTTTTTTAGGGGGTAAAGCCATTATGGACTTTTTGTTAGAAGGTCT
TA-TTTCCCTGTCCCACAAAGAAGAAACTGGAAATTAGTTTCTCACTGCCAAAAAGGCCCATCTCAGCCCAGCAACAGTT
A--GACATAGCCGGCCAACCCGGCCCGTCCAAAGCCCCCCAAA-TATGTCTTCAATTCTTATTTCATTTTTG--ATTTTG
AAACTT---ATTATTATCTGTCTTCCGTTGAGCCACACCGAAACCCCAGCACGAGCAGCCGCAATGGACAGGCTTATCTC
TTCGCCGCTCCACCTCACCCGCGCGCCATCCTCCTCCGCCGCC---TCCAGGGCCAGGCCCCGCGCCGGCGGCCACAACC
ACCTCCTCCCCGCCACCGCCGCGCCAAGGTCCTTCGCGCCCCTCCACGGCCTCAGGCTGCACCCTCTGGCGCCGCTCCTC
CCCAGGCCGCCCCAGTCCCTCCTCGCCGCGGCATCCGCCTCCTCCCGCGCC------GTCAATCCCGCCCCACCGGAACA
AGATGACGAGGCCGCCGACGCCTCTGCGCAGGCTCCGGCCACCGGAGTCACACGTTTCTTCCAGAAGGTCAGTGCGCCAG
TGCTCTGCTT-----TGTTCCCTTCATTCCCTGAACCTGAATTCTCGGCCACAAACGAACGATGAGCCAGAGGTGGAATG
GATGATAAGGCGGCGAAATTTACGTTCTTGCCGGGAATATTCCACAG------------------GTCGCATCGGCCGCG
GCAGTCGCCTTGGTAGCGGCGCTGGTGGTGGCGGCAGTCGGGCCGTCGTCCATGGTGCCGCCGGCGCTGGCCTCGGCGCT
GCACAGGCACTCCCACTCGGCGGCCGTCACGGCGGGCCGGAGCATCTTCAAGTCGGAGCTGCTGGGCAGCGCGTGGACGG
GCTTCCTGGCCGGCTGCCTGCACACGCTCTCGGGCCCGGACCACCTGGCCGCGCTGGCGCCGCTCTCCATCGGGCGGTCG
CCGGTGGAGAGCGCGGCGGTGGGCGCGCTCTGGGGCTGCGGCCACGACGCCGGCCAGGTCATGTTCGGCCTGCTCTTCCT
CGGCCTCAAGGACCGGCTCCACATCGAGGTGCTCCGCACCTGGGGCACCCGCGTCGTCGGCCTCACCCTGCTCGTCATCG
GCGCCATCGGCATCCGGGAGGCCACGCAGGCGGCGCCCTGCGTCGCCGCGGCGCTCGAGGGCG------GCGCGCACCAG
CACGGCGGCAACAACAGCGACGCGCTGGAGAAGGCGCTGCTGGGCGCCGGCGGCAAGAAGAAGGAGATCAGCTTCGCGAC
GTTCGCCACGGGGATCGTGCACGGCCTTCAGCCGGACGCTCTCATGATCATCCTGCCGGCGCTGGCCATGCCGTCGCGCG
CTGCGGGGGCCGCCTTCCTCGGCATGTTCCTCGTGGGCACCGTGCTCTCCATGGCCAGCTACACCGTGCTCATCGGCACC
TGCACCGAGGCGCTCAAGGAGAGGGTGCCCCGGATCACGGAGAAGCTCACCTGGGCGGCCTCCCTCGTCGCCATCTCCAT
GGGGGTCGCCATCATCGTCAGCGAGTCCTTCGGGGTGAGCTTGTACTGAACCACTGATCATCATCATCATCATCATCCCC
TGCGCCTGCAACAACAAC------------GACGACATTGCCTTGCTT---------CGAATGAACCCGCCATGGAAATT
TTGCTACGTCATGCCCTTCCTCTTGAGATCGAGCAGCAGCGACTAGGATGTAGTTTACGATTCAAGAAAGGAAATCTCAT
GTTAGAATTTG-CTTAGCTGCTGCTGAGACGAGTGGCAATTTGCCGCCATTGTTGTTATGATGATCTGGAATTCTGGATG
CACTACCAACTTTACTTGAGCGATTGGCCCGAAGAAATCAAGGAAATGCCCCGTTTCCTATTGTGATGGTTGCTT---CT
GGTTAATTGTCGTTTTTGTACCGTGACGAGGTTTTTCATGGACCAACCTTAGCACATTGTTCCTGAACGTAGCCTTAGCT
TCTAGAGTATTCTTCAAATTTCAGAGGTTTGTGGTAGCTTAAAATTTGTACTTGCTTCATTTCTCTTGTCTCTGGTACGA
AAAGGGAGCGAGAAAGGCTTGGTGGAACG-AAAAAATGGCAGAGTTAAAATTCGTACAGATGTCATGATTTATACTCCCT
CCGTCAC-------------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S------SS-
-----------------------------------S---------------S---------------------SS-----
----------------------------------------SS------------S---S------S---S--SSSS-S-S
---------SS-----S----S-S-SS-----S--S-------------SSSSSSSSSSSSSSSSS-------------S
SS-SS----S----SS-S---SS--SS----S----------------------------S-------------------
--SS-------------------S----------------------------------------------S---------
S-----------------------------S------------S------------------------------------
------SSS-----S-----------------------------------------------------------------
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-------------------------------------------------S-----------S------------------
-------------S--------------------------S--------------------------------------S
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-------------------S----------------------------------------------------------S-
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--------------S-----------------------------------------------------------------
-----SS-------------------------------------------------------------------------
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----------------------S--------------------S-----------S-------SSSSSS-----------
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------S-------------------------------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------------------------S---SS-S---------------------
-----------------------------------S--------------------------------------------
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S----------------------S----S---------------------------------------------------
------------------------------------------------S-------------------S-----------
----S----SS---------------S-------S---------------------S--S------------S-------
----------------------SS---------S-S-----------------S--------S----------------S
--------------------------------------------------------S-----S------S--------SS
--S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_445
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-------------------------CGCTAGCTGGGACAACAGAA-----------------------------------
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>reverse_1439
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------------------------------------------------------------------------------CG
GATGATAAGGCGGCGAAA--------------------------------------------------------------
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>forward_881
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-------------------------------------------------------------TCTCAGCCCCACAACAGTT
T-------------------------------------------------------------------------------
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>reverse_2963
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--ATCACATATGCCCGTGCGTT----------------------------------------------------------
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