>input_sequence_55213
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----------------------------------------ATGTCCCCGGTCTCCATCTGCATGGCCCTCGTCGTCCTCC
TCATCACGCTCCTCGCGCCGCCTTCCTCCTCCCCCTCCGCGCCGCCCCCCGTCACCGCCGCCACGCTCGTCTACCTCGAG
TCCCCCTCCGACTCCCCGGCCCAGAAGCTCCTCGGCGCGCTCCTCGACGCCGCCGTCTTCGTCGCGCTCGTCGCCGTCGT
CACCTTCATCCTCGTCGCGCTCTACTACTACCGCTGCACCGGCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCG
TCCTCTTCTCCATGGGCGGCGCCATCCCAGTCGCCCTCCTCCGCCGCCTCGACGCCCCGCTCGACGCGCCCACCGCGCTC
CTCCTCCTCTTCAACGCCTCCGCCGTCGGCGTCCTCTCCGTCTTCGCCTCCGCGGTCCCCATCCTCGTCCGCCAGGGCTA
CATGGTCGCGCTCGCCGTCATCGTCGCCGCCTGGCTCTCCAGGCTCCCCGAGTGGACCACCTGGATCATGCTCCTCGCCC
TCGCCGTCTATGACCTCGTCGCCGTGCTCGCGCCAAGGGGCCCGCTCAGGATGCTTGTGGAGCTCGCCTCCTCCAGGGAC
GACGAACTCCCGGCGCTCATCTACGAATCACGCCCCACGGTAGGCCCACCCGAGACTTCCTCCTCCTATGCTCCGGCAAT
GTGGTCCGAGGAGTCGCAGCACCCCGATTCTGCCGCCCGATCGGGCCCAAACCTGTATGACAGGGTGGGTCAGCAGGATG
ATTCCGGTCCTGCCATGGTAGAAATGAGGGATCTTGGCTCAGCAAGCCGTGACATGACTACCTCAAATCAAGGTGTAACA
GGGCAGACATCAAATCAAGGTGGGAGCGCACAGCATGCTGTCATTCTGATCGAGCAGGGTCAGGAAGAAGAAGAGGCAGC
TCCATTGGTGTCAGCGGCATCTGCCAACCCTACCGTCGCCAATGAGGAGCATACACAAATTTCTACATCAGAACCTCCCG
AGGAGGAGTTTGAGATGTTTGAGTCTAGCAGGGGCATCAAGCTGGGACTTGGCGATTTTGTCTTCTACAGCGTGCTTGTG
GGGAGGGCTGCCATGTATGACCTCATGACGGTCTATGCGTGCTACCTTGCCATCATCGCTGGGCTTGGCTGCACCCTCAT
CTTGCTGTCAATATGCAGGCACGCATTGCCTGCACTCCCGATCTCTATCATGCTGGGAGTCGTGTTCTACTTCTTGACGC
GGTTGCTGATGGAGCCATTCGTTGTCGGCGCTTCGACCAATTTGGTGATGTTCTGA------------------------
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>chr3B_1_TraesCS3B01G218100
TCTTAGAAAAAGTATATAGAATTATTAAAGCAAGAGGACTTGCTAAATTGTTGAGGTGAAGAAGTTGTACTTTGTTACAA
TGTTCAAGTGGGTGGTGTTGCTGATTCCTTGGTGATAGTTGGAATTTGACTAGAGCCATTGGGTCGCTGTGCGATCACCG
AAAGTGAAAAATAATACAGTACTAGCACGCGCACATCTTTTCCAAGTTAGGCCGAACATGGTGTGCAGTGATTCATATGG
TTCTTTCACTCTTTTGTTTCTGTTGGTTTGGAAGCGACTGACGAGGACCATGTGCAATAATTTATGGCTCGCTCTTGGGG
TGTTTTTGGCTTGGAGGCCCCATCACCACCACCAGCGTGGAAGCGGCGGGCATGCCTCTCATTTTCCTTTTCCTTTTTTT
TTGAAATGTCATTTTCCTTTTCCTGAGATAAAATTGTGAAACACCTACGCGACTTACACAAAACAAAACGAGTGAATCGA
TTGGATAGCCAAAACTAATCAACAAAGTTCTTTGTTTCGCAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGAGGTGCTCGCGGTCATGTCCCCGGTCTCCATCTGCATGGCCCTCGTCGTCCTCC
TCATCACGCTCCTCGCGCCGCCTTCCTCCTCCCCCTCCGCGCCGCCCCCCGTCACCGCCGCCACGCTCGTCTACCTCGAG
TCCCCCTCCGACTCCCCGGCCCAGAAGCTCCTCGGCGCGCTCCTCGACGCCGCCGTCTTCGTCGCGCTCGTCGCCGTCGT
CACCTTCATCCTCGTCGCGCTCTACTACTACCGCTGCACCGGCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCG
TCCTCTTCTCCATGGGCGGCGCCATCCCAGTCGCCCTCCTCCGCCGCCTCGACGCCCCGCTCGACGCGCCCACCGCGCTC
CTCCTCCTCTTCAACGCCTCCGCCGTCGGCGTCCTCTCCGTCTTCGCCTCCGCGGTCCCCATCCTCGTCCGCCAGGGCTA
CATGGTCGCGCTCGCCGTCATCGTCGCCGCCTGGCTCTCCAGGCTCCCCGAGTGGACCACCTGGATCATGCTCCTCGCCC
TCGCCGTCTATGACCTCGTCGCCGTGCTCGCGCCAAGGGGCCCGCTCAGGATGCTTGTGGAGCTCGCCTCCTCCAGGGAC
GACGAACTCCCGGCGCTCATCTACGAATCACGCCCCACGGTAGGCCCACCCGAGACTTCCTCCTCCTATGCTCCGGCAAT
GTGGTCCGAGGAGTCGCAGCACCCCGATTCTGCCGCCCGATCGGGCCCAAACCTGTATGACAGGGTGGGTCAGCAGGATG
ATTCCGGTCCTGCCATGGTAGAAATGAGGGATCTTGGCTCAGCAAGCCGTGACATGACTACCTCAAATCAAGGTGTAACA
GGGCAGACATCAAATCAAGGTGGGAGCGCACAGCATGCTGTCATTCTGATCGAGCAGGGTCAGGAAGAAGAAGAGGCAGC
TCCATTGGTGTCAGCGGCATCTGCCAACCCTACCGTCGCCAATGAGGAGCATACACAAATTTCTACATCAGAACCTCCCG
AGGAGGAGTTTGAGATGTTTGAGTCTAGCAGGGGCATCAAGCTGGGACTTGGCGATTTTGTCTTCTACAGCGTGCTTGTG
GGGAGGGCTGCCATGTATGACCTCATGACGGTCTATGCGTGCTACCTTGCCATCATCGCTGGGCTTGGCTGCACCCTCAT
CTTGCTGTCAATATGCAGGCACGCATTGCCTGCACTCCCGATCTCTATCATGCTGGGAGTCGTGTTCTACTTCTTGACGC
GGTTGCTGATGGAGCCATTCGTTGTCGGCGCTTCGACCAATTTGGTGATGTTCTGAGTTCTGACTAATGTTCTGTTGTCG
TAGTTACATGTGTGCCAAGTGAAAAAGCAATTGAGAACATCATGTGGAAGTGACTACTACTTTGTTGGTCACATCTTGTA
GGTAGACTGTCATGTAGTTATGACTAGGAAATGGCATTGAGACTTTAGACTCTTATAAGTAAGGTAGCATCAGTTTTATC
TGGGATCAACTAGTCCATGTCTTGTCGTATAGGTCTATCAACATGGCATGGTATTCAAGGAGAACACATTTGCATTTCAG
TTTCATTTTTTATTCTTGCATTCTTCTTGTTTTTTGCTGGCGTTCTCCCTTTAGAT-TAGTGATAAAGTATAAATCTAT-
---------C-ATCTGCCTGCAATTTTCTTTTATTTTCTTTTCGTGTCTGGTATTATTTCTTACATTTTACT--------
---------AATAGAGAATAGAGTTAATCAAGCGAATGTATT-ATTTGAAAACCATTTATGGGCAATTCAGGAAC---GC
AGCACTTGGTAATTTTG----TTCTCATTTGATTCTATGACTGACCATATTCCTCCTGTCTGCATGAACTGACAAGGTGA
GAATATTTGGTTTTGTTTGTCTTTT--------------------CTCCTTGTATTCAAATTCAGGAGTAGCGTTTTGAG
CAGTGTTTTAAATAGCGGCGGACCTCCAAATCAACTATAGCGGAGCTATAGCATGAGACCATTTAGCGGCACCCTGCTGA
AAAGGCTATAGTTTTGAGTGAGTGTCCAGATAAGAGTAACAAAATCAAGC-TTTTGTTGG-TTGTAGGTGCTTATTTTAC
TGCATTGTGCTTTTTGTTGTTTATCATGGACGCTGGA-AGCCAAGCATTTAGCTGTATTTAGTTGTAGTGAGCAGAAGTG
CTT--GAGTCTTTTGTTTTGCCCTAGCTTGCATACATACATTCATTCATT----------------CATTCAGTACTCTC
CTCAGCGAATCTACTAGGAGTACTTG--CTGTACATGTTGTTTGTCCGTCTGTCTATTGTGTGAGACGGCTGGCTCAACG
TCATTTGGTTAGGGTA
>chr3D_986
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-------------------------GAGGTGCTCGCGGTCATGTCCCCGGTCTCCATCTGCATGGCCCTCGTCGTCCTCC
TCATCACGCTCCTCGCGCCGCCCTCCTCCTCCCCCTCCGCGCCGCCCCCCGTCACCGCCGCCACGCTCGTCTACCTCGAG
TCCCCCTCCGACTCCCCGGCCCAGAAGCTCGTCGGCGCGCTCCTCGACGCCGCCGTCTTCGTCGCGCTCGTCGCCGTCGT
CACCTTCATCCTCGTCGCGCTCTACTACTACCGCTGCACCGGCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCG
TCCTCTTCTCCATGGGCGGCGCCATCGCCGTCGCCCTCCTCCGCCGCCTCGACGCCCCGCTCGACGCGCCCACCGCGCTC
CTCCTCCTCTTCAACGCATCCGCCGTCGGCGTCCTCTCCGTCTTCGCCTCCGCGGTCCCCATCCTCGTCCGCCAGGGCTA
CATGGTCGCGCTCGCCGTCATCGTCGCCGCCTGGCTCTCCAGGCTCCCCGAGTGGACCACCTGGATCATGCTCCTCGCCC
TCGCAGTCTATGACCTCGTCGCCGTGCTCGCGCCAAGGGGCCCGCTCAGGATGCTTGTGGAGCTCGCATCCTCCAGGGAC
GACGAACTCCCGGCGCTCATCTACGAATCACGCCCCACGGTAGGCCCAGCCGAGACTTCCTCCTCCTATGCTCCGGCAAT
GTGGTCCGAGGAGTCGCAGCACCCCGATTCTGCCGCCCGATCGGGCCCAAACCTGTATGACAGGGTGGGTCAGCAGGATG
ATTCGGGTCCTGCCATGGTAGAAATGAGGGATCTTGGCTCAACAAGCCGTGACATGGCTACCTCAAATCAAGGTGTAACA
GGGCAGACATCAAATCAAGGTGGGAGCGCACAGCATGCTGTCATTCAGATCGAGCAGCGTCAGGAAGAAGAAGAAACAGC
TCCATTGGTGTCAGCAGCATCGGCCAACCCTACTGTCGCCAATGAGGAGCATACACAAATTTCTTCATCAGAACCTCCCG
AGGAGGAGTTTGAGATGTTTGAGTCTAGCAGGGGCATCAAGCTGGGGCTTGGCGATTTTGTCTTCTACAGTGTGCTTGTG
GGGAGGGCTGCCATGTATGATCTCATGACGGTGTATGCGTGCTACCTTGCCATCATCGCTGGGCTTGGCTGCACCCTCAT
CCTGCTGTCGATATGCAGGCACGCATTGCCCGCACTCCCGATCTCCATCATGCTGGGAGTCGTGTTCTACTTCTTGACGC
GGTTGCTGATGGAGCCATTCGTTGTCGGTGCTTCGACCAATTTGGTGATGTTCTGAGTTCTGACTAATGTTCTGTTGTCG
TTGTTACATGTTTGTCAAGCTAAAAAGCAATTGAGAACATCATGTGGGAGTGATTACTACTTTGTTGGTCACATCTTGTA
GGTAGAGAGTCATGTAGTTATGACTAGGAAATGTCATTGAGACTTTAGGTAACG---------------TCAGTTTTATC
TGGGATCAACTAGTCCATGTCTCGTCGTATAGTTCTATCAACATGGCATGGTATTCGAGAAGAACACATTTGCATTTCAG
TTTCATTTTTCATTCTTGCGTTCTTCTTGTTTTTTGCTGGTGTTCTCCCTTAGATTATAGTGATAAAGTAAAGTGATCAT
GCTTTTAAACAATCAGCCTGCAATTTTCTTTTCAT--------GTCTGTTATTTTTTTTCTTATATGGTACCCCCTTACA
GAGGGAGTAAATAGAGAATAGAGTT-ATCAAGCAAATGCATTAATTTGAAAACCATTTATGTGCACTTCAGGAGTTCAGC
AGCACTTGGTAATGTTTGCCTTTCTCATTTGATTCTAGG---GACCATATTCCTCCTGTCTGCTTGAATTGACAAGCTGA
GAATATTCGTTTTTGTTTGTCTTTTGAAGGAAAAATAGCATGAAACTCCTTGTGTTCAAATTCACA----GC--------
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----------GTTTCGAGT---------GATAGGAGTAACAAAATCAAGCCATTGGTTAGTTTGTAGGTGCTTATTTTAC
TGCATTGTGCTTTATGTTGTTTATCATGGACGCTGGAGAGCCACGCATTTAGCTGTATTTAGTTGTAGTGAGCAGAAGTG
CCC--GAGTCTTTTGTTGTGCCCT--------------------------------------------------------
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>chr3A_986
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-------------------------GAGGTGCTGGCGGTCATGTCCCCGGTCTCCATCTGCATGGCCCTCGTCGTCCTCC
TCATCACGCTCCTCGCGCCGCCCTCCTCCTCCCCCTCCGCGCCCCCGCCCGTCACCGCCGCCACGCTCGTCTACCTCGAG
TCCCCCTCCGACTCCCCGGCCCAGAAGCTCGTCGGCGCGCTCCTCGACGCCGCCGTCTTCGTCGCGCTCGTCGCCGTCGT
CACCTTCATCCTCGTCGCGCTCTACTACTACCGCTGCACCGGCTTCCTCAAGAACTACATGCGCTTCTCCGCCTTCTTCG
TCCTCTTCTCCATGGGCGGCGCCATCGCCGTCGCCCTCCTCCGCCGCCTCGACGCCCCGCTCGACGCGCCCACCGCGCTC
CTCCTCCTCTTCAACGCATCCGCCGTCGGCGTCCTCTCCGTCTTTGCCTCCGCGGTCCCCATCCTCGTCCGCCAGGGCTA
CATGGTCGCGCTCGCCGTCATCGTCGCCGCCTGGCTCTCCAGGCTCCCCGAGTGGACCACCTGGATCATGCTCCTCGCCC
TCGCCGTCTATGACCTCGTCGCCGTGCTCGCGCCAAGGGGCCCGCTCAGGATGCTTGTGGAGCTCGCCTCCTCCAGGGAC
GACGAACTCCCGGCGCTCATCTACGAATCACGCCCCACGGTAGGCCCAGTCGAGACTTCCTCCTCCTATGCTCCGGCAAT
GTGGTCCGAGGAGTCGCAGCACCGCGATTCGGCTGCCCGATCGGGTCCAAACCTGTATGACAGGGTGGGTCAGCAGGATG
ATTCCGGTCCTGCCATGGTAGAAATGAGGGATCTTGGCTCAACAAGCCGTGACATGGCTACCTCAAATCAAGCTGTAACA
GGGCAGACATCAAATCAAGGTGGGAATGCACAGCATGCTGTCATTCAGATCGAGCAGCGCGAGGAGGAAGAAGAGACAGC
TCCATTGGTGTCAGCGGCATCTGCCAACCCTACCATCGCCAATGAGGAGCACACACAAATTTCTTCATCAGAACCTCCCG
AGGAGGAGTTTGAGATGTTTGAGTCTAGCAGGGGCATCAAGCTGGGACTTGGCGATTTTGTCTTCTACAGTGTGCTTGTG
GGGAGGGCTGCCATGTATGATCTCATGACGGTCTATGCGTGCTACCTTGCCATCATCGCTGGGCTTGGCTGCACCCTCAT
CTTGCTGTCGATATGCAGGCACGCATTGCCCGCACTCCCGATCTCCATCATGCTGGGAGTCGTGTTCTACTTCTTGACGC
GGTTGTTGATGGAGCCATTCGTTGTCGGTGCTTCGACCAATTTGGTGATGTTCTGAGTTCTGACTAATGTTCTGTCGTTG
TTGTTACATGTGTGTCAAGCTGAAAAGCAACTGTGAACATCATGTGGGAGTGACTACTACTTTGTTGGTCACGTCTTGTA
GGTAGACAGTCATGTAGTTATGACTAGGAAATGTCATTGGGACTTTAGACTCTTATAAGGTAGT----ATCAGTTTTATC
TGGGATCAACTAGTCCATGTCTTGTCGTATAGTCAGTTTT---------------------------------ATTTCAG
TTTCAATTTTTATTCTTGCGTTCTTGTTTTTTTTTTCTCGCGTTCTCCCTTAGATTAGTGATAAA----ATAAATCTAT-
---------CAATCTGCCTGCAATTTTCTTTTATTTTATTTTCGTGTCTGGTATTGTTTCTTACATTGTAGT--------
---------AATAGATAATAGAGTT-ATCAAGCGAATGTATT-CTTTGAAAACCATTTATGGGCAATTCAGGAGT---GC
AGCACTTGGTAATTTTTGTCTTTCTCATTTGAATCTAGGACTGACCATATTCCTCCTGTCAGCATGAATTGACAAGCTGA
GAATATTTGGTTTTGTTTGTCTTTT--------------------CTCCTCGTATTCAAATTCAGGAGTGGC--------
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----------GTTTTGAGTGAGTGTCCAGACAAGAGTAACAAAATCAAGCTTTTTGTTCG-TTGTAGGTGCTTATTTTAC
TGCATTGCGCTTTGTGTTGTTTATCATGGACGTTGGAGAGCCAAGCATTTAGCTGTATTTAGTTGTAGTGAGCAGAAGTC
CTCGAGAGTCTTTTGTCGTTACCTTGCATGCATGCATACATGCATGCATACATGCATGCATACATACATTCAGTATTCTC
CTCAGCGAATCTACTAGGAGTACTTGAGCTGTACATGTTCTTTGGGCGCCTGTCTGTTGTGTGAGACGGCTGGCTCAACG
TCATCTGGTTAGGGTA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
----------------------S---------------------------------------------------------
------------------------------S-------------------------------------------------
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--------------------------S-S---------------------------------------------------
-----------------S--------------------------------------------------------------
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------------------------------------------------S-------------------------------
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-----------------------------------------S--------------S-----------------------
----------------------------------------------S----------S-----------------S----
----------------------------------------------------------------S---------------
----------------------------------------------------------------------S---------
--------------------S-----------------------------------------------------------
---------S--------------------S--------------S----------------------------------
----------------------------S---------------------------------------------------
-S------------S----SS--------------------------S--------------------------------
-------S-------------------------S-------------------------SS--SSSSS------------
--------------------------------S-----------------------S--S--------------------
-------------------S-------------------------------SSSS-------------------------
-------------------------------------S-----------------S-----------S------------
-------------------------S-----------------------------------------------SS-----
----------------S--------------------S------------------------------S-------S---
---------------------------------------------------------------------S--SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS------------------------------------------------S---------------------
-------------S------------------------------------------------------------------
--S--------------S------S--S-----S-------S---S---S-------------------------S----
---------------------------------------S----SS--S------S------------------------
----S-----------
>forward_329
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---------------------------------------------------------------------CGCTCTTGGGG
TGTTTTTGG-----------------------------------------------------------------------
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>reverse_2101
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--------------------CCTCATGACGGTCTATGCGT----------------------------------------
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>forward_330
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----------------------------------------------------------------------GCTCTTGGGG
TGTTTTTGGC----------------------------------------------------------------------
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>reverse_2206
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---------------------------------------------TATCATGCTGGGAGTCGTGT---------------
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>forward_2170
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----------------------------------------------------------------------GCACCCTCAT
CTTGCTGTCA----------------------------------------------------------------------
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>reverse_3029
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--------------------------------------------------------------------GCACCCTGCTGA
AAAGGCTA------------------------------------------------------------------------
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