>input_sequence_55179
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-------------------------------------------------------------------ATGGGTAACTGCC
AGGCGGCCGACGCGGCGGCGGTGGTGATCCAGCACCCGGCCAGCGGCCGCACGGAGCTGGCCTACTGGTCGCTCCCGGCG
GGCGAGGTCATGGCCGCCAACCCGGGCCACTACGTCGCCGCCGTCATCACCGCCCCG--CACGCCGCGTCTTCCGAGGG-
------------CCCCGGCGGCGCCCCGCCCGTGAAGCACCTCAAGCTGCTCCGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCGCCTCGTCAGCTTCGAAGGTACGTCGCGTCTGCCGCCTCCAAGCTCGCTCCCGCCGCCCCCTCCGATCGCT
TGCGTTG-------GGACGCCGCGCCGAAAA-TGTTTCCCGGCGTCAACTTGTTGCGCGTGTACGTGCGTA--------C
CTTCGACTGCGACGGGCGAGGGAGGGATTAAGCTGCGATTCCCGCCTCTCGCCGTCCGATTAAATGCCGTTTTTTGACTA
CTCGAGCGGCGGATTAAGTGGAGCTTTACCCGTAATAACTTTCTGGGGCGAGCTGGCGTTCTAGGTGTCACCGTGCTCCA
TTATTTGCCAGTATCTTCTTCCCTATTCTATTCCCGCCGAGGAGTAACTAACGAGATCTTCTCCATTGATTGGTGCTGTG
CGG----CGATCGATCGAGCAGAGGTGCTGAAGGAGTTCGCGACGAAGCGGCACGTCAAGCTCAGCCGCGTCATGGTCAA
GGCCAAGGACGAGGTG---GCGGCGCCCACGAAGCCGGCCAAGCCCAGGCGCCGGCGTGGCAGCAGCGGCGGCGGCGGCG
CCGACGCCGGCGTCGTGCGCGAGGAATCCGACCGGTCGCTCGCAAAGGTGCGTTCGCATGCTTCTCCTAGCTTCCGAATG
TTCACTGGCACATGCATTGCAACCACCGGCTCGGCCC-AAATCTTT-GGTGATCCGTTCGGTCGCCATCGACGGGGATCA
TGGGCCGATCCATCGCGGCTCGTACCAATATCTGCGCCGAATTG-ACTGCCAGTCCTCGTCATCGCTGTCCGAACTAGTT
AATGCCCCGAAACGGCCGTGTCACCAACCCTGCG-CTTTTTCCCTTAT-TCCAGATCATGCGCCAGTCGGTGGAGGAGGA
A------GAGGCCGCGGCCGCACCGAGCTCCGGGCGCGTACCGAAGGCAGGAACAAACGACAACAATGGCGTCGCGGCGT
CCGAGCCCGGCCTCGA---CGACGACGACGACGACTGCGACCTGGAGTCGCTGCTGCCGCCCGGGCTGGCGCTCGGCAGG
CGGCTCGGCCGGCAGTGGCGGCCGGCCCTGCAGAGCATCGCGGAAGGGCGAGACTGA-----------------------
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>chr4A_1_TraesCS4A01G039700
TAATTCAATAAACTAAAACCTCGACAAGTAATTTGGAACGGAGGTAAAACCACGACAAGTAATTTGGAACGGAGGGAGTA
ACTATTAATGTCCATTATTTGCTTAAGAGAAAAGTATAATTTCGGTCCCTCAGGTTTACTGAAC----------------
CTCAATTGTCTTTGGGTGACATTTAGTCCGTTAAGTCTCAAAACCGGAAAAGTTTCGTCCAAAACCAAATTGTCTTCATA
TTTTCATTTTTTCCTACGA------TTGTCCCAATTTTGGTTGCGAACCAGACGTGCTCCAAGTTTTCCCTCTTAATCCA
CGATTGGGTCCTTGCCAGGGGG-CCTCGTGTCCTTGGTGGCACTACGTACGTCCTCTGCCGGCCCATCCTCATTCCACAC
TTTCCTAGCAGTCCTATACATATACGTATAGTACATACATACATATACATAACATGTTACAGATTCATTGTTCTCGCAAG
CTTGACATCAACTTTAGGACAATTTCTAATCATTTTTTGTACGCCTGCCACATATTGGTAGACCACCAAACACGCTCAAC
ATTTCCCCACTGAGTAGTTCCTAGTGTTTTGGTACTCTCCCCGGTTTGTCTCATTCGTGCCACCACACCCCTCGACCGGT
CGAGCCGCACCCGGCCACCGCACGCACGCGAGAGCCGAAAAAAGGCAACGCAACGGGGGACTCGCCGGCCTGCATCGCTT
GATGCGTGCACGGCCTAGTAACGTGGACTGTAGCTAAATTCGGCACACCGGCCCGGTCGAGTTAGGCGTCGACCCGCCGG
GTGGGAGGGAAATACCACCACTTCCAATAATTAACTTCGGTCACACAGAGTAGCCGGCCGCACCCGCACGTATCTCTCTC
TCTCT------------------------------------------------------------------CCATCGGCG
TCGACGGCACCA---------------GCCTTGTTATAAAACGGTCGCCGCTGCCACCTGCGACGGTCACTCGCCCGCCC
CCGACCTCCCGAC-CCCCTCGCCTCTCGA-ACGCACGAGGGAACAGACGCCGGCGTGTGC-AGAGCCATGGGTAACTGCC
AGGCGGCCGACGCGGCGGCGGTGGTGATCCAGCACCCGGCCAGCGGCCGCACGGAGCTGGCCTACTGGTCGCTCCCGGCG
GGCGAGGTCATGGCCGCCAACCCGGGCCACTACGTCGCCGCCGTCATCACCGCCCCG--CACGCCGCGTCTTCCGAGGG-
------------CCCCGGCGGCGCCCCGCCCGTGAAGCACCTCAAGCTGCTCCGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCGCCTCGTCAGCTTCGAAGGTACGTCGCGTCTGCCGCCTCCAAGCTCGCTCCCGCCGCCCCCTCCGATCGCT
TGCGTTG-------GGACGCCGCGCCGAAAA-TGTTTCCCGGCGTCAACTTGTTGCGCGTGTACGTGCGTA--------C
CTTCGACTGCGACGGGCGAGGGAGGGATTAAGCTGCGATTCCCGCCTCTCGCCGTCCGATTAAATGCCGTTTTTTGACTA
CTCGAGCGGCGGATTAAGTGGAGCTTTACCCGTAATAACTTTCTGGGGCGAGCTGGCGTTCTAGGTGTCACCGTGCTCCA
TTATTTGCCAGTATCTTCTTCCCTATTCTATTCCCGCCGAGGAGTAACTAACGAGATCTTCTCCATTGATTGGTGCTGTG
CGG----CGATCGATCGAGCAGAGGTGCTGAAGGAGTTCGCGACGAAGCGGCACGTCAAGCTCAGCCGCGTCATGGTCAA
GGCCAAGGACGAGGTG---GCGGCGCCCACGAAGCCGGCCAAGCCCAGGCGCCGGCGTGGCAGCAGCGGCGGCGGCGGCG
CCGACGCCGGCGTCGTGCGCGAGGAATCCGACCGGTCGCTCGCAAAGGTGCGTTCGCATGCTTCTCCTAGCTTCCGAATG
TTCACTGGCACATGCATTGCAACCACCGGCTCGGCCC-AAATCTTT-GGTGATCCGTTCGGTCGCCATCGACGGGGATCA
TGGGCCGATCCATCGCGGCTCGTACCAATATCTGCGCCGAATTG-ACTGCCAGTCCTCGTCATCGCTGTCCGAACTAGTT
AATGCCCCGAAACGGCCGTGTCACCAACCCTGCG-CTTTTTCCCTTAT-TCCAGATCATGCGCCAGTCGGTGGAGGAGGA
A------GAGGCCGCGGCCGCACCGAGCTCCGGGCGCGTACCGAAGGCAGGAACAAACGACAACAATGGCGTCGCGGCGT
CCGAGCCCGGCCTCGA---CGACGACGACGACGACTGCGACCTGGAGTCGCTGCTGCCGCCCGGGCTGGCGCTCGGCAGG
CGGCTCGGCCGGCAGTGGCGGCCGGCCCTGCAGAGCATCGCGGAAGGGCGAGACTGAAGCGGAGTAGTACACGGCCGGAT
CAGACGCACGGCTCCGTCTCTCTCTGTGTGTATGTATGTGTAAAATGT-----------------------------TGC
GTGGCTGCGGCTCCAGATGGATGCC--TAGTGGTAGTAGTAGCAACTGTGCAAGTATGGGTCACTGGGTGTAAAAGTGTG
TAACGTGACGGATGATATGGA---CTATTGACTGGTCCTCGAGAACCAAAATGACCACGCGATCAAACTGCTCGAGCCGT
GGGTCGAGCGTCCCGGGCGGCGAG-CCCTCCCACATTATTACGTATCGGGAGGCTCAATCTCTTTTGATCGGGAGAGAAA
GATCGGGATGCTCAATTGATCGATCGATCGATCGATCTCCAGTCAGAGGCCTGCTCGTTTGGGCATCTGAACAGCGGCCG
GGCCAAGCGCTGAGCAG-CCATCATGCACGTGTAGCAGAGACTATCATCCAACACGTGCACGGCGATCTCTGATAGTCTG
ATCTCCCTCGCTCCTCCGCAGGGAAAAGCCCCGGTTTGCTCTGCCTGCCT------GGTCTCTGGGCTG---ATCTGATC
AGCTCCGTGACAAA-GCCAGGGAGGGATTCGGCGGTGCTTCAGACGATGCATGGATGGAGGGACAGATGGCGTGTGGGAG
ATGGGTCGGGGACTGACCC---------GACCTGACCTGACCTGATCGAACTTGACCGGCGACGTGATCGCCA---TGCC
CATGCACTGCAGCTGGTATCTGTATCTGCCTGTCCGTCTGGAGACGGCGACGCTGCACTGCAGCAGGCGTGTGGTAGCTC
GGTAGCCTAGCTTCCGAGACAAGAAAAGTCGACACGGAAAGTGCCTGCATAGATAGCTCCCGGAGGGCAAAATTCCTGGC
GCAGCATATGCTCTACGTACGTGCAGGGGCACGTGATGCGCCGAAAGATTCGTTGGCCTCGTTAACCTGATGGACTGATC
GGAGCTAGCACTGGTGCTATGGCCTGCCTAGCCGCGGCTGGAATCGTTTCGTTTTGTTCTCCCATGGGCACTGTG
>chr4B_78
-----------------------------------------------------------------------------GTA
ACTGTTCATGTCCATTATTTGCTTCAGACAAAAGTATAATTTCGGTCGCTCGGGTTTACTGAAAGTCTACATCTAGCACT
CTCAATTGTTTTTGGGTGACATTTAGTCCCTTGAGTCTAAAAACCGGATATGTTTCATCCAAAACCAAATTGTCTTCATA
TTTTCAAAAAAAATAAAATCTATGCTTGTCACAGTTTTGGTTGCGAACCAAACGTGCTCCAAGTTT--CCCCTTAATCCA
CCATTGGGTCCTTGCCAGGGGGGCCTTGTGTCCTTCGTGGACTT---------CTCTGCCTGCCCATCCTCATTCCACAC
TTTCCAAGCAGTCCTATGCATAGTTCTAAAAAAACAGATC-------------------------CATTGTTCTTGTAAA
CTTGACATTAACTTTAGGACAATTTTTCATCA-TTTTTGTACGCTTGCCACATTTTGGTAGACCACCAAACACGCTCAAT
ATTTCCCCACTA-------------GTTTTGGTACTCTCCCCGGTTTGTCTCATTCATGCCACCACACCCCTCGACCGGT
CGAGCCGCACCCGGCAATCCCACACACGCGAGAGCCAGAAAAAGGCAA-----CGGGCGATTCGCCGGCCTGCATCGCTT
AATGCGTGCACGGTCAAGTAACGTGGATTGTAGCTAAATTCGGCACACCGGCCCGGTCGAGTTAGGCGTCGACCCGCTGG
GCGGGAGAGAAATACC---ACTTCCAATTATTAACTCCGGCCACACACAGCCGG---------CCGCACGTATCTCTCTC
CCCCTCTCTCTCTCCTTTCCTTGTAAACATCCGAGACCTTGCCAAGTAGAGTACATACCGTGCTACAGCACCCATCGGCA
TCGACGGCACCAGCCGGGCGCGGAACCGCCTTATTATAAAACGGTCGCCACTGCCACCTGCGACGGTCACTCGCCCGCCC
CGACCCCCCTCTCTCCCCTCGCCTCTCAA-ACGCACAAGAGAACAAACGCCGGCGTGTGCTGCAGACATGGGTAACTGCC
AGGCGGCCGACGCGGCGGCGGTGGTGATCCAGCACCCGGCCAGCGGCCGCACGGAGCTGGCCTACTGGTCGCTCCCGGCC
GGGGAGGTCATGGCCGCCAACCCGGGCCACTACGTCGCCGCCGTCATCACCGCCCCG--CACACCGCC---TCCGAGGG-
------------GCCCGGCGCCGCCCCGCCCGTCAAGCACCTCAAGCTGCTCCGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCGCCTCGTCAGCTTCGAAGGTACGTCGCTTCCGATACCACCAA----GCTCCCGCCGCCCCCTTCGATCGCT
TGCGTTG-------AGACGCCGCGCCG-AAAATGTTTCCCGGCGTTAACTTGTTGCGCGTGTACGTTCGTA--------C
CTTCGATTGCGACGGGCGAGGGAGGGATTAATCTGCGATTCCCGCCTCTCGCCGTCCGATTAAATGCCGTTTTTTGACTA
CTCGTGCGGCGGATTAAGTGGAGCTTTACCCGTAATAACTTTCTGGGCCGAGCTGGCGTTCTAGGTGTCACCGTACTCCA
TTATTTGCTAGTATCGTCTTTCCTATTCTGTTCCCACCGAGGAGTAACTAACGAGATCTTCTCCATTGATTGGTGCTATG
CGG----CGATCA----AACAGAGGTGCTGAAGGAGTTCGCGACGAAGCGGCACGTCAAGCTCAGCCGCGTCATGGTCAA
GGCCAAGGACGATGTG---GCG---CCCACGAAGCCGGCCAAGCCCAGGCGCCGGCGTGGCAGCA---------GCGGCG
CCGACGCCGGCGTCGTGCGCGAGGAATCCGACCGGTCGCTCGCAAAGGTGCGTTCGCATC--TCTCCCAGTTTCCGAATG
TTCACTCGCACATGCATTGCAACCACCGGCTCGCCCCAAAATCTTT-TGTGATCCGTTCGGTCGCCGTCGATGGAGATCA
TGGATCGATCCATCGCAGCTCCTACGAATATCTTCGTCGCATTGAACTGCCAGTCCTCGTCATCGCTGTCCAAACTAGTT
AATGCAGCGAAACGGCCGTGTCACCAACCCTGCA-CTTTTCTCTCTCAATCCAGATCATGCGCCAGTCGGTGGAGGAGGA
GGAGAAGGAGGCCGCGGCTGGACCGACCTCCGGCCCCGTGCCGAAGCCAGGAGCAGACGACAACAATGGCGTCGCGGCGT
CCGAGCCCGGCCTCGA---CGACGACGACGACGACTGCGACCTGGAGTCGCTGCTGCCGCCCGGCCTGGCCCTCGGCAGG
CGGCTCGGCCCGCAGTGGCGGCCGGCCCTGCAGAGCATCGCGGAAGGGCGAGACTGAAGCCGG--AGTACACGGCCGGAT
CAGACGCACGGCTCCGTCTCTCTCTGTGTGTATGTATGTGTAAAATGTACTCGGGCTGTACCAGCTGGGG--CGTGTTGC
GTAGCTGCGGCTCCAGATGCCTAGTGGTAGTA---GTGCTAGTAACTGTGCAAGTATGGGTCACTGGGTGTAAAAGTGTG
TAACGTGACAGATGATATGGA---CTTTTGACTAGTCCTCGAGAACCAAAATGACCACGCGATCAAACTGCTCGAGCCGT
GGGTCGAGCGTCCCGGGCGGCGAG-CC-TCCCACATTATTACGTATCGGGAGGCTCAATCTCTTTTGATCGAGAGAGAAA
GATCGGGATGCTCAATTGATC----------------TCCAGTCATAGAG--GCTCGTTCGGGCATCTGAACAGCGGCCG
GGCCAAGCGCTGAGC-G-CCATCATGCACGTGTAGCAGAGGCTATCATCGAACACGTGCACGGTGATCTCTGATAGTCTG
ATCTCCCTCGCTCC---GCAGGGGAAAGCCCAGGTTTCCTCTGCCTGCCT------GGTCTCCGGACTGATCATCAGCTC
GGCTCCGTGACAAAAGCCAGGGAGGGATTCGGCAGTGTTTCAGACGATGCATGGATGGACAGATGGAT-GCGTGTGGGAG
ATAGGTTGGGGACTGACCC---------GACCTGACCT-----GATAGAACTTGACCGGCGACGTGATCCCCATGCTGCC
CATGCACTGCAGCTGGTATCTGTATCTGCCTATCCGTCTG-----GGCGACGCTGCACTGCAGCAGGCGTGTAGTAGCTC
GGTAGCCTAGCTTCCGAGACAAGAAAAGTCGACACGAAAAGTGCCTGCATAGATAGCTCCCGGAGGGCAAAATTCCTGGC
GCAGCAT---ATACT-GTAGGTACAGGGGCACGAGAGGCGCCGAAAGATTCGTTCGCCTCGTTAACCTGATGGACTGATC
GGAACCAGCACTGGTGCTATGGCCTGCCTAGCCGCGGCTGGAATCGTTTCGTTTTGTTCTCCCCTGAGCATTGTG
>chr4D_571
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---------------------------------ACTCTCCCCGGTTTGTCTCATTCGTGCCACCACACCCCTCGACCGGT
CGAGCCGCACCCGGCCACCCCACACACGCCAGAGCCAAAAAAAGGCAA-----CGGGGGATTCGCCGGCCTGCATCGCTT
AATGCGTGCACGGTCAAGTAACGTGGATTGTAGCTAAATTCGGCACACCGGCCCGGTCGAGTTAGGCGTCGACCCGCTGG
GTGGGAGAGAAATACTCCT------AATAATTAACTTCGGTCACACTTAGCCGG---------CCGCACGTATCTCTCTC
CCGCAGTAGGCGGCCA---------------------------------AGTACATACCGTGCTACAGCAGCCATCGGCA
TCGACGGCACCACCCGGGCGCAGAACCGCCTTGTTATAAAACGGTCGCCACTGCCACCTGCGACGGTCACTCGCCCACCC
CGACCCCCCTCTC-CCCCTCGCCTCTCAACACGCACAAGGGAACAAACGCCGGC--GTGC-GCAGGCATGGGCAACTGCC
AGGCGGCCGACGCGGCGGCGGTGGTGATCCAGCACCCGGCCAGCGGCCGCACGGAGCTGGCCTACTGGTCGCTCCCGGCC
GGGGAGGTCATGGCCGCCAACCCGGGCCACTACGTCGCCGCCGTCATCACCGCCCCG--CACACCGCC---TCCGAGGG-
---------------CGGTGGCGCCGCTCCCGTGAAGCACCTCAAGCTGCTCCGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCGCCTCGTCAGCTTCGAAGGTACGTCGCGTCCACCGCCTCCAA----GCTCCCGCCGCCCCCTCCGATCGCT
TGCGTTG-------AGACGCCGCGCCG-AAA-TGTTTCCCGGCGTTAACTTGTTGCGCGTGTACGTGCGTAC----GTGC
CTTCGATTGCGACGG-------------------GCGATTCCTGCCTCTCGCCGTCCGATTAAATGCCGTTTTTTGACTA
CTAGAGCGGCGGATTAAGTGGAGCTTTACCCGTAATAACTTTCTGGGCCGAGTTGGCGCTCTAGGTGTCACCGTACTCCA
TTATTTGCTAGTATCCTCTTTCCTATTCTATTCCCACAGAGGTGTAACTAACGGGATCTTCTCCATTGATTGGTGTTGTG
CCACGATCGATCA----AGCAGAGGTGCTGAAGGAGTTCGCGACGAAGCGGCACGTCAAGCTCAGCCGCGTCATGGTCAA
GGCCAAGGACGAGGTGGCCGCG---CCCACGAAGCCGGCCAAGCCCAGGCGCCGGCGTGGCAGCAACGGCGGCGGCGGCG
CCGACGCCGGCGTCGTGCGCGAGGAATCCGACCGGTCGCTCGCAAAGGTGCGCTAGCATC--TCTCCCAGTTTCGGAATG
TTCACTCGCACATGCATTGCAACCACCGGCTCGGCCC-AAATCTTC-TGTGATCCGTTCGGTCGCCGTCGATGGAGATCA
---------------------------ATATCTTCATCGAATTGAACTGCCGGTCCTCGTCATCGCTGTCCAAACTAGTT
AATGCCCCGAAACGGCCGTGTCACCAACCCTGAACCTTTTCTCTCAAAATCCAGATCATGCGCCAGTCGGTGGAGGAGGA
---GAAGGAGGCCACGGCTGGACCGACCTCCGGCCGCGTGCCGAAGCCAGGAGCAAACGACAACAATGGCGTCGCGGCGT
CCGAGCCCGGCCTCGACGACGACGACGACGACGACTGCGACCTGGAGTCGCTGCTGCCTCCCGGCCTGGCCCTCGGCAGG
CGGCTCGGCCCGCAGTGGCGGCCGGCCCTGCAGAGCATCGCGGAAGGGCGAGACTGAAGCGGAGTACACGACCG-CGGAT
CAGACGCACGGCTCCGTCTCTCTCTGTGTGTATGTATGTGTAAAATGTACTCAGGCTGTACCAGCTGGGGGGCGTGTTGC
GTAGCTGCGGCTCCAGATGCCTAGTGGTAGTAGTGGTACTAGTAACTGCGCAAGTATGGGTCACTGGTTGTAAAAGTGTG
TAACGTGACAGATGATATTACGCTCTTTTGACTGGTCCCCGAGAAGTAAAATGACCACGCGATCAAACTGCTCGAGCCGT
GGGTCGAGCGTCCCGGGCGGCGAGCCC-TCCCACATTATTACGCATCGGGAGGCTCAATCTCTTTTGATCGAGCGAGAAA
GATCGGGATGCTCAATTGATC----------------TCCAGTCAGAGGCTG----GTTCGGGCATCTGAACAGCGGCCG
GTCCAAGCGCTGAGC-GCCCATCATGCACGTGTAGCAGAGACTATCATCGAACACGTGCACCGTGATCTCTGATAGTCTG
ATCTCCCTCGCTCC---GCAGGGGAAAGCCCCGGTTTCCTCTGCCTGCCTCTGCCTGGTCTCTGGGCTG---ATCAGCTC
GGCTCCATGACAAA-GCCAGGGAGGGATTCGGCAGTGTTTCAGGCGATGCATGGATGGACAGATGGAT-GCGTGTGGGAG
ATGGGTTGGGGACTGACCCGACCTGACTGACCTGACCT-----GATCGAACTTGACCGGCGACGTGATACCCA---TGCC
CATGCACTGCAGCTGGTATCTGTATCTGCCTATCCATCTG-----GGCGACGCTGCACTGCAGCAGGCGTGTAGTAGCTC
GGTAGCCTAGCTTCCGAGACAAGAGAAGTCGACACGAAAAGTGCCTGCATAGATAGCTCCCGGAGAGCAAAATTCCTGGC
GCGGCGTATGATACT-GTACGTACAGGGGCACGAGAGGCGCCGAAAGATTCGTTGGCCTCGTTAACCTGATGGACTGATC
GGAACTAGCACTGGTGCTATGGCCTGCCTAGCCGCGGCTGGAATCGTTTCGTTTTGTTCTCCCCTGGGCATTGTG
>chr2B_987
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----------------------------------------------------GCGTGTGC-GCAGACATAGGTAACTGCT
AGGTGGCGGACGCGGCGGTAGCGGTGATCCAGCACCTGGGCAGCGGTCGCACTCAGCTCGCCTACTAAGCGTTCCCGGCT
GGGGAGGTCATGGGGGCCAACCCGGGCCACTACGTCGCAGCCGTGATCACCACCCCGTACACACCGCG---TCATCCGTG
GGTGACGCGGCCGCGCGCGGCTGCCCTGGACGTGAAGCACCTCAAGCTGCTCGGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCCCTTCGTCAGCCTCGAAGGTACGTCGCGTGCGATAACTCCAA----G-----------CCCTTCGATCGTT
TGCATTGACACTTGAGGCGCCGTACCG-AAAATGCTTTCCAGCGTCAACTTGTTAGGCGTGTATACGTATTCCGGCGGAC
GTTGCGACGCGACGA---------GGATTAATCTGCGATTCGTGCCTGTCGCCGTCCGCTTGCATGCCGTTTTCTAACTA
CTAGCGCGGCTG-TTTAGTGGAGCTTTATCCATAATAACTTTCTGG----------------------------------
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>chr7D_1178
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-------------------GGAGCCGCTCCCGTGAAGCACCTCAAGCTGCTCCGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCGCCTCGTCAGCTTCGAAGGTACGTCGCGTCTACCGCCTCCAA----GCTCCCGCCGCCCCCTCCGATCGCT
TGCGTTG-------AGACGCCGCACCG-AAAATGTTTTCCGGCGTTAACTTGTTGCGGGTGTACGTACGTACTGGAGTAC
CTTCGATGGCGACGGGCGAG----GGATTAATCTGCTATTCCCGCTTCTCGCCGTCCGCTTAAATGCCGTTTTTTGACTA
CTAGAGCGGCGGATTAAGTGGAGCTTTACCCGTAATAACTTTCTGGGCCGAGCTGGCGTTCTAGGTGTCACCGTACTCCA
TTATTTGCTAGTATCTTGTTTCCTATTCTATTCCCACCGAGGAGTAATTTACGAGATCTTCTCGATTGATTGGTGTTGCG
CCC----CGATCA----AGCAGGGGTGCTGAAGGAGTTCGCGACGAAGCGGCACGTCAAGCTCAGCCGCGTCATGGTCAA
GGTCAAGGACGAGGAG---GTGCCGGCGACGAAGCCGGCCAAGCCTAGGCGCCGGCGTGGCAGC---GGCGGCGCCGGCG
CTGACGCCGGCGTCGTGCGCGAGGAATCAGACCGGTCGCTCGCAAAGGTGCGTTCGCATGCATCTCCCAGTTTCCGAATG
TTCACTCGCACATGCATTGCAACCACCGCCTCGGCCC-AAATCTTTTTGTGATCCGTTCGGTCGCCATCGACGGAGATGA
TGGACCGATCCATCGCAGCTCGTACCAATATCTTCGCCG-----------------------------------------
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>chr3D_1178
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-------------------GGAGCCGCTCCCGTGAAGCACCTCAAGCTGCTCCGCCCCGACGACACGCTCCTGCTCGGCC
GCGTCTACCGCCTCGTCAGCTTCGAAGGTACGTCGCGTCTACCGCCTCCAA----GCTCCCGCCGCCCCCTCCGATCGCT
TGCGTTG-------AGACGCCGCACCG-AAAATGTTTTCCGGCGTTAACTTGTTGCGGGTGTACGTACGTACTGGAGTAC
CTTCGATGGCGACGGGCGAG----GGATTAATCTGCTATTCCCGCTTCTCGCCGTCCGCTTAAATGCCGCTTTTTGACTA
CTAGAGCGGCGGATTAAGTGGAGCTTTACCCGTAATAACTTTCTGGGCCGAGCTGGCGTTCTAGGTGTCACCGTACTCCA
TTATTTGCTAGTATCTTGTTTCCTATTCTATTCCCACCGAGGAGTAATTTACGAGATCTTCTCGATTGATTGGTGTTGCG
CCC----CGATCA----AGCAGAGGTGCTGAAGGAGTTCGCGACGAAGCGGCACGTCAAGCTCAGCCGCGTCATGGTCAA
GGTCAAGGACGAGGAG---GTGCCGGCGACGAAGCCGGCCAAGCCTAGGCGCCGGCGTGGCAGC---GGCGGCGCCGGCG
CCGGCGCCGGCGTCGTGCGCGAGGAATCAGACAGGTCGCTCGCAAAGGTGCGTTCGCATGCATCTCCCAGTTTCCGAATG
TTAACTCGCACATGCATTGCAACCACCGCCTCGGCCC-AAATCTTTTTGTGATCCGTTCGGTCGCCATCGACGGAGATGA
TGGACCGATCCATCGCAGCTCGTACCAATATCTTCGCCG-----------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
---S--S-----------------S---S------------------S---S-----------S----------------
---------S-------------------S--S-----S---------S-S-----S-----------------------
------SSSSSSSSS-SSS-----------S--S----------------S---------------SS--S---------
-S------------------------S--------S----SSS-SSSSSSSSS-------S-------------------
-----S-----------S----SSSS--S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S-S--S
--------S----------------S-S----S-----------S--------S-------------------------S
-----------SSSSSSSSSSSSSS-------------------------------------------------------
-------------------S---S------------S-----------SSSSS-------S-------------------
S------------S-S-----------S-------------------------------------------------S--
-------S--------S-S----------------------------S--SS-SSSSSSSSSS-----------------
S-S----------------------------------------------------------------------------S
-------------------------------------------------S------------------------------
-SSS--S--SSS---------------S--------S--------S---------------SS--S--------------
-------------------------------------------------------------------------------S
--S-----------------------------------------------------------S-----SSS---------
------------S-------------------------------------------------------------------
---------------------------------------------------SSSS-------------------------
--------------S------------S----------------------------------------------------
------S------------------------S------------------------------------------------
-----------------------------------------------S--------------------------S-----
--------S-----------S--------------S--------------------------------------------
------------SSSSS---------------------------------------------------------------
----------------------S------------------------------------------S--------------
-------------------------------------------------------------S-----S--S---------
------S----------------------------------------S--------------------------S-----
---S------------S----------------S-------------------------------------S--------
---------------------------------S------SS-SS--S--------------------------------
S-----------------S-S-----S------S-----S------S-----S---------------------------
----------------------------------------------------------------S-----S---------
----------S---------------------------------------------------------------------
--------------------------------------------------------------------------------
--S----------------SS-SSS------S--S---S---S-------------------------------------
---------S----------------S-----------------------------------------------------
---------------------------S-------------------------------------------S--------
---------------------SSSSSSSSSSSSSSSS-------------SS-------S--------------------
---------------S---------------------------------S-------------S----------------
--------------SSS------S-------------S-------------------------------------S-S--
S--------------------------------S---S---------------------SS--SS---S-----------
------S-------------------------------SSSSS--------------------------S----------
-------------------------------S--------SSSSS---------------------------S-------
------------------------------------S-------------------------------------------
----------S-SSSS------S----------S--S-------------------------------------------
---S-----------------------------------------------------------S------S----
>forward_560
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------------------------------------------------------------GACCACCAAACACGCTCAAC
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>reverse_2208
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-----------------------------------------------TTCCAGATCATGCGCCAGTC-------------
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>forward_881
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-------------------------------------------------------------ACCCGCACGTATCTCTCTC
T-------------------------------------------------------------------------------
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>reverse_2852
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---------------------------------------------------TGCTCGTTTGGGCATCTGAA---------
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