>input_sequence_55174
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------------------------------------------------------------------ATGGGGCGCGCGCC
GTGCTGCGACAGGACCGGGCTGAAGAAGGGGCCGTGGACGCAGGAGGAGGACGAGAAGCTCGTCGCCTACATCAAGAAGC
ACGGCCAGGGCAACTGGCGCACCCTCCCCAGGAATGCCGGTAAGCGACTCGGACTCATGCAGCTGCTTGCTCTGCCAAGT
TGGTTAGTTAGTTATCCACCGATCGATCCCACACAATAATTAAC----------------------TGTGTTGCGTCTGG
GTGTGTGCAGACCTTGAGCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAACTACCTCCGGCCGGACATCAAGCGCGG
CCGCTTCTCCTTCGAGGAGGAGGAGACCATCATCCAGCTACACAGCATCCTCGGCAACAAGTAAGAACT-----------
------------ACTCACTTCACATCATTCAACTCGACGTAGTACTAGCTAGGCGTCTCTGTTGCTATAGCAGCAGCAGC
AGCTAGGCGTACGGTTTCCTGGCGAGTTTCATTTTGATGTGCTTTTTTGCATGATTGCTCAGGTGGTCAGCCATTGCGGC
GAGGCTGCCCGGACGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCAAGCGCCTCCTCCGCATGGGCA
TCGACCCCGTCACCCACGCGCCGCGCCTCGACCTCCTCGACCTCTCCTCGCTCCTCAAGCCCGCCGCCTACTACCCCACA
CAGGCCGACCTCGACACGCTCCGCGCCCTCGAGCCGCTCGCCAACTACCCGGACCTCCTCCGCCTCGCCTCCACCCTCCT
CGCAGCCCCGACCACAACCTCCTCGCAGCCCACGACCGAACAGCAGATGCTCCTCCCTTGGCTGATCCAGGCGCAGATGG
CGCAGCAGGTATCTCAGGCGCCGCCTCAACATGCCACGGCCGCAGACATGTTCTTGCAGCCCAGCTCGGCGTGCCAAATG
CCGGGTCTGGTTCACGCGAACCCCGCGCAGCAACTACACCAGGATCACATGGTGCCCTCTGACTACGGGCAGCTCCCGGG
CTACGACAACCAGCTCGAGCTCGACTACGTGCCGGCGCTGATGCAGATGGCGTCAGACACGTCGAACCTGCAGTGGAGCA
GCCCGGTCACAAGTAGCAACAACAACAACAACTGCAACGTCGGCTCCGGCGTATCCACGCCGTCATCGAGCCCCGCGGGG
CGTGTGAACTCGGCTTCACCGACAACCTTCTGCGCCAACGCGAGCAACATCGACGCCTTCAGCGCCGACGCCGCCGGGCT
GTTCGACATGCACCTGTCCGATCTCCTGGATGTGAGCGACTACATGTAA-------------------------------
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>chr2A_1_TraesCS2A01G206400
CGAGCTAGAGATAAGAGTTGGCCGGGCCGGCACGAGTCTGGGCCGTCCGTCCCCGGCGCTGCGTTCCGTCAGCGGGGCGA
GGTGGCGCAGGAGGGCGGGCGCCACAAGGCAGGGCGGGGCGGGGACGTTCGTCAACGCCAGCTAGCCGACGGGAGTGGCG
AAACACGAGTC-AATATCCATTGATTGGATTGGATTGGATCGGATGTTTTTGCCCGCCAAGAAATTTACCCTGCCCA--G
TACATCCTTGGTCTA-TAGTAGTAGTAAAAGTAAAATACAGTACAGTTGACCGTTTTTCACTCCATCATTGTGTTTTGTT
TCCTAGCTCGTACGTTCAGCCTGATGGAGTCTAGTACTAGATTCTACCACCATCGGTAAAAATGGCATGTTCCTGATGGA
ACTGGCAAAGGGAAGCGCAC---------------------TCTACTCCGCAAGGATCGACACATGTGATTATCCTAGTC
AGTCAAAACACGAGACAATGTTGCACGGGGCTACGGGCTAGCCTTGCCTGCGACGATGGGATAGTCGGGGTGGCACGCCA
GCGCGTGCCGTGGGATCTGCTTGGCCACTTTGGGGGGTGGCGTCCCGCCCTGCGTGCGTTTCTTGTCTTCCGGTCGCGAC
CCTTTTTTACCCCTTCCATCCTCATCCAACGGACGAGACGGTCGCT-GCCGTGGGCGTGGCCGTGAGACGAGACGCAGCC
CGCAGCCGGCAGGAGAGCCACGTCGCGGCCGCGATAAACAAAGGCCGGCACCGAATCCTGTTGACTTGGACCGCCACCCC
CGGCCCGTCGCGCTCGCGCCCTTTATAAGCCTTTCCCTCGCCCCCACACACCTTCGTCTCCCGTCCTCTACCTCCATCCA
TCCGTCCAGTTTTCAGTTTTCACACTCTCCTGGCTAGCTAGCTAGCTCCTCTCCATCCTCTACAGCGGCTGCGAGACAAA
CTGAGCCTTTTCCTGCTCGCCCCATCGCCCAATCCGTCTCTACTCTACAGTTGTATACGCGATTAGATGGGGCGCGCGCC
GTGCTGCGACAGGACCGGGCTGAAGAAGGGGCCGTGGACGCAGGAGGAGGACGAGAAGCTCGTCGCCTACATCAAGAAGC
ACGGCCAGGGCAACTGGCGCACCCTCCCCAGGAATGCCGGTAAGCGACTCGGACTCATGCAGCTGCTTGCTCTGCCAAGT
TGGTTAGTTAGTTATCCACCGATCGATCCCACACAATAATTAAC----------------------TGTGTTGCGTCTGG
GTGTGTGCAGACCTTGAGCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAACTACCTCCGGCCGGACATCAAGCGCGG
CCGCTTCTCCTTCGAGGAGGAGGAGACCATCATCCAGCTACACAGCATCCTCGGCAACAAGTAAGAACT-----------
------------ACTCACTTCACATCATTCAACTCGACGTAGTACTAGCTAGGCGTCTCTGTTGCTATAGCAGCAGCAGC
AGCTAGGCGTACGGTTTCCTGGCGAGTTTCATTTTGATGTGCTTTTTTGCATGATTGCTCAGGTGGTCAGCCATTGCGGC
GAGGCTGCCCGGACGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCAAGCGCCTCCTCCGCATGGGCA
TCGACCCCGTCACCCACGCGCCGCGCCTCGACCTCCTCGACCTCTCCTCGCTCCTCAAGCCCGCCGCCTACTACCCCACA
CAGGCCGACCTCGACACGCTCCGCGCCCTCGAGCCGCTCGCCAACTACCCGGACCTCCTCCGCCTCGCCTCCACCCTCCT
CGCAGCCCCGACCACAACCTCCTCGCAGCCCACGACCGAACAGCAGATGCTCCTCCCTTGGCTGATCCAGGCGCAGATGG
CGCAGCAGGTATCTCAGGCGCCGCCTCAACATGCCACGGCCGCAGACATGTTCTTGCAGCCCAGCTCGGCGTGCCAAATG
CCGGGTCTGGTTCACGCGAACCCCGCGCAGCAACTACACCAGGATCACATGGTGCCCTCTGACTACGGGCAGCTCCCGGG
CTACGACAACCAGCTCGAGCTCGACTACGTGCCGGCGCTGATGCAGATGGCGTCAGACACGTCGAACCTGCAGTGGAGCA
GCCCGGTCACAAGTAGCAACAACAACAACAACTGCAACGTCGGCTCCGGCGTATCCACGCCGTCATCGAGCCCCGCGGGG
CGTGTGAACTCGGCTTCACCGACAACCTTCTGCGCCAACGCGAGCAACATCGACGCCTTCAGCGCCGACGCCGCCGGGCT
GTTCGACATGCACCTGTCCGATCTCCTGGATGTGAGCGACTACATGTAATGAAAAATACAAGTACGGGTTCCACCTGCAT
CTGCATGCATGTGGAAGCTAGGTCGAACAGTTCATCACG---TACCGACCGACAGGGGGCAAAACATGCATACGATGATG
ATCTCGAACGAGAGCCGTTTTTGTACAGGATTGTACCATTTTTATCCAGTTCATGGTCACTGGTTACTGTTAGAAACTTC
ACTTCTGTTTTTCCTGTTATTCTTATTTCGATCTTCAATTCATTGGTGTGTGTGGTGCATGTCAGTGTGGGGAATCATGG
CAAAGGTGGCTTCATATGATTGGTGGAGGCGGCTGCTATCCCTCTCACTTGCATCATATGCTTTGTCTCCAGTGAAGAAA
AATAGGGTCACTCCGGTTGCTTTTCTTAGAATGCTACTTTTATTGTCTGTTTGTTCTTGTTCATTCGATTTCTTTAGTTT
AATTTTGCTGCCTCTTCTATTTCATTGGTTACTGTACTGCTGAGAATTTAATATAAGTATAATAGAAGAAATCAAAGGGA
GGGAGAAAAACCAACTAGAATAAGGACACAAGTAACTGTCAAGTCACTGATGGTCACATGACAAGCAATTATTCTTAAAT
CGTTGGGAAAATAGACTGGAGTTGGTGTGCAACTTAATCATTGCTGCTGCCTGCTCCGTCTGATCGATGAGCGACCAACA
GTTACCCGATCGACCACATATGTATTTGTTTTTCTG----TAAGTCAAAGAGAAATCTATGGCAATGGATTAATTAGCAA
GCTTCATCAAAGTTTACATTCCTCGTAATACTATATGTTGTAGTTGTAGTTTGATATATATAACCGTCTTGTTTGGGTAT
GGTCAGGTCAACACACACAACTCGTACAAGGCTGCATGAGCCTAGGTCGTGGTACACCTCCAAGGCCAATGTGTGTAGTG
TACGTACACACATACCAAAGTAACTCAATGTATGCATGCATTCTTAGTTATACGTATGGCATATCATTATTTCCGTACGT
ATTTAAGGCCTTAACT
>chr2D_9
AGATA---------GAGTTGGCCGGGCCGGCACGAGTCTGGGCCGTCCGTC-------------------AGCGGGGCGA
GGTGGCGCAGGAGGGCGGGCACCACAAGGCAGGGCAGGCCAGCGGCGTTCGTCAACGCCAGCTAGCCGACGGGAGTGGCA
AAACACGAGTCAAATATCGATAGATTAGATTGGATTGGATG------TTTCGCCCGCCAAGAAATTTACCCACTACTACG
TAGATCCTTGGTTTACTAGTAGTAGTAAAAGTAAAATACAGTACAGTTGACTGTTTTGCACTCCATCATTGTCTTTTGTT
TCCTAGCT----CGTTCAGCCTGACGGAGTCTAGTA---GATTCTACCACGATCGGTAAAAATGGCATGTTGCTGATGGA
ACGGGCAAAAGGCCAAGGGAGGAGGAAGCACGCTCCACTGATCTACTCCGCAAGGATCGACACATGTGATTATCTCG---
-GTCAAAACACAAGACAATGTTCCACGAGGCTACGGGCTAGCCTTGCCTGCGACGATGGGATAGTCGGGGTGGCACGCCA
GCGCGTGCCGTGGGATCTGCCTGGCTACTTTGGGGGGTGGCGTCCCGCCCTGCGTGCGTTTCTTGTCTTCCGGTCGCGA-
CCTTTTTTACCCCTTCCATCCTCATCCAACGGACCAGACGCTTTCCGGCCGTGGGCGTGGCCCTGAGACGAGACGCAGCC
CGCAGCCGGCAGGAGAGCCACGTCGCGGCCGCGATAAACAAAGGCCGGCACCGAATCCTGTTGACTTGGACCGCCACCCC
CGGCCCGTCGCCCTCGCGCCCTTTATAAGCCTTTCCATCGCCCCCACACACCTTCGTCTCCCGTCCTCTACCTCCATCCA
TCCGCCCAG-TTTCAGTTTTCACACTCTCCT----AGCTAGCTAGCTCCTCTCCATACTCCA-----GCTGCGAGACAAA
CTGAGCCTTTTCCTGCTTGTTCCATCGCCCAATCCGTCTCTACAGTTCTTGTG--TACGCGATTAGATGGGGCGCGCGCC
GTGCTGCGACAGGACCGGGCTCAAGAAGGGGCCGTGGACGCAGGAGGAGGACGAGAAGCTCATCGCCTACATCAAGAAGC
ACGGCCAGGGCAACTGGCGCACCCTCCCCAAGGATGCCGGTAAGCGACTCGGACTCACACAGCTGCTTGCTCTGGCA---
-----------------ACCGATCGATCCCACACAAAGGTGATGGATAGATAGATAATTAATCGGTTGTGTTGCGTCTGT
GTGTGTGCAGACCTGGAGCGGTGCGGGAAGAGCTGCCGGCTGCGGTGGACCAACTACCTCCGGCCGGACATCAAGCGCGG
CCGCTTCTCCTTCGAGGAGGAGGAGACCATCATCCAGCTCCACAGCATCCTCGGCAACAAGTAAGAACTACGTAATTAAC
AACTATATATGCACTCAGTTCACATCATTCAACTCGACGTAGTAC-----------------------------------
------------GGTTTCCTGGCGAGTTTGGTTTTGAT-------TTTACATGATTGCTCAGGTGGTCAGCCATTGCGGC
GAGGCTGCCCGGACGGACGGACAACGAGATCAAGAACTACTGGAACACGCACATCCGCAAGCGCCTCCTCCGCATGGGCA
TCGACCCCGTCACCCACGCGCCGCGCCTCGACCTCCTCGACCTCTCCTCGCTCCTCAAGCCTGCCGCCTACTACCCCACG
CAGGCCGACCTCGACACGCTCCGCGCCTTCGAGCCGCTCGCCAACTACCCGGACCTCCTCCGCCTCGCCTCCACCCTCCT
CGCAGCCCCGACCACAACCTCCTCGCAGCCCACGACCCAACAGCAGATGCTCCTCCCTTGGCTGATCCAGGCGCAGATGG
CGCAGCAGGTACCTCAGGCGCCGCCGCAACATGCCACGGCCGCAGACATGTTCTTGCAGCCCAGCTCGGCGTGCCAAATG
CCGGGCCTGGTTCACGCGAACCCCGCGCAGCAACTACACCAGGATCACGTGGTGGCCTCTGACTACGGGCAGCTCCCGGG
CTACGACAACCAGCTCGAGCTCGACTACGTGCCGGCGCTGATGCAGATGGCGTCAGACACGTCGAACCTGCAGTGGAGCA
GCCCGGTCACAAGTAG---CAACAACAACAACTGCAACGTCGGCTCCGGCGTATCCACGCCGTCATCGAGCCCCGCCGGG
CGTGTGAACTCGGCTTCAACGGCAGCGTTCTGCGCCAACACGAGCAATATTGACGCCTTCAGCGCCGACGCCGCCGGGCT
GTTCGACATGCACCTGTCCGATCTCCTGGATGTGAGCGACTACATGTAGTG-AAAATACAAGTACGGGTTCCATTCCACA
-TGCATGCATGTGGAAACTAAGTTGAACAGTTCATCACGTACTACCGACCGAGAGGGGGCAAACACATGCATGATGATCA
CGT----ACGAGAGCCGTTTTTGTACAGGATTGTACCATTTTTATCCAGTTCATGGTCACTGGTTACTGTTAGAAACTTC
ACTTTTGCTTTTCCTGTTATTCTTATTTCGATCTTCAATTCATTGGTGTGTGTGGTGCATGTCAGTGTGGGGAATCATGG
CAAAGGTGGCTTCATATGATTGGTGGAGGCGGCTGCTGTCCCTCTCACTTGCATCATATGCTTTGTCTCCAGTGAAGAAA
AATAGGGTCACTTGCATCATA----------------------TGTCTGTTTGTTCTTGTTCATTCGATTTCTTTAGTTT
AATTTTGCTGCCTCTTTTATTTCATTGGTTACTGTACCACTGAGAATATAATATAAGTATAAAAGAAGAAATCAAATGGA
GGGAGAAAAACCAACTAGAATAAGGACACAAGTAACTGTCAAGTCACTGATGGTCACATGACAAGCAATTATTCTTTAAT
CGTTGGGAAAATAGACTGGAGTTGGTGCGCAACTTAATGATTGCTGCTGCCTGCTCCGTC-GATCGACGAGCGACCAACA
GTTACCCGATTGACCAC--ATGTATTTGTTTTTCTGTATATAAGTCAAAGAGAAATCTATGGTAATGGATTAATTAGTAA
GCTTCATCAAAGTTTACATTCCTCGTAATACTATATGTTGTAGTTGTAGTTTGA----TATAACCGTCTTGTTTGGGTAT
GGTCAGGTCAACACACACGACTCGTACAAGGCTGCATGAGCCTAGGTAGTACGCCTT---CAAGGCCAATGTGTGTAGTG
TACGTACATACATACCAAAGCAACTCAATGTATGTATGCATTCTTAGTTATACGCATGGCATATCATTATTTCCGTACGT
ATTTAAGACCTTAACT
>SNPs
S--SSSSSSSSSSS-------------------------------------SSSSSSSSSSSSSSSSSSS----------
--------------------S--------------S--S-S-S-S----------------------------------S
------------------S--S----S-------------SSSSSSS---S--------------------SSSS-S---
--S---------S--------------------------------------S-----S--------------S-------
--------SSSS------------S-----------SSS-----------S--------------------S--------
--S------S--SSSS-SSS------------------------------------------------------SSSSSS
S----------S----------S----S----------------------------------------------------
--------------------S----S-----------------------------------------------------S
----------------------------------S-----S-SS-S----------------S-----------------
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-----------S------------------------S-------------------------------------------
----S----S---------------------SSSS---------------------S---S-SSSSS-------------
-----------------S-SS----------------------SS-S-SSS--SS-------------------------
---------------------S---------------------------------------S------------------
------------------------------S-S------------------------SS---------------S--SSS
SSSSSSSSSSSSSSSSS-------------------SSS-S-SS-----------------------------------S
--------------S-----------------------------------------------------------------
---------------------------------------S----------------------------------------
-----------------S---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS-----------------SS-------SSSSSSS---S-------------------------------
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-------------------------------------------------------------S-----------------S
---------------------------S----------------------------------------------------
-------------------------------------S------------------------------------------
-----------S-------------S------------------------------------------------------
-----S------------------------------------------S-----S-------------------------
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----------------SSS---------------------------------------------------------S---
------------------S--S--S-S------------S-------S--S-----------------------------
------------------------------------------------S--S---------------------SSSSSSS
S---------------S---S--S----------------------------S----------SSSSSSSSSSSSSSSSS
SSSSSSS-------------------------------------------------------------------------
----S--S------------------------------------------------------------------------
-------------------------------------S------------------------------------------
------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
----------------S--------------------SS--------S--------------S-------------S---
----------------------------------------------------------------------------S---
---------------------------S----------S---------------------S------S------------
----------S------SS-------------------------------------------S--------------S--
------------------------------------------------------SSSS----------------------
------------------S----------------------------S--SSSS-SSSSS--------------------
--------S-----------S-------------S-------------------S-------------------------
-------S--------
>forward_1005
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-------------------------CGCCCAATCCGTCTCTACTC-----------------------------------
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>reverse_3028
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-------------------------------------------------------------------TGAGCGACCAACA
GTTACCC-------------------------------------------------------------------------
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