>input_sequence_55161
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----------------------------------------ATGGAACCAGTGGCGGCCGACGAGATCCTCCTGCGCAAGA
TCTTGCTGGGGCTGCCGACGAGGGCCGTCGCCCGCGGCCGCTGTGTGTCCACGCAGTGGCGCGGCCTCCTCTCCGACCCG
GCCTTCCTCGACGTCCACGCCCACTCCGCCCACGTCGTCTCCGGCGCCGGCGCCGCCGCGGAGGCGCTGCTGGTCTCCCA
GACCGAGCCGGAGCCCGGCCTGGTCCCCAAGACGACCGTCTACAACGTCTCCACGGCGGCGACCATGTGCTTTCTCTACT
TG---CCCGCCGGGTACACCCCCGCCCAAGCCTGCAACGGCTTCGTCCTCTTCGTCGCCAACAACGCCAGCTGGCTGCCG
CTCGTCATCTGCAACCCCATCACCGGCGTCGAGCTGCCGGTTGACCCGCCGCTCAGGAGCGAGACGTCGTCGAGCGTGTT
CTGGAACTCTCACTGGCACATGGACGCCATGGGGTACAGCCCGTCGACGCGGGAGTACAAGCTCTTCCGCCTCTCCTTCT
CGGCCAGCGGCGACCAAGGGCTGCTCGATGTCAACTACCTGCAGGTGTTCACCTTGGGCCGTGGGCCGGGGGCAGGCGTG
TGGCGCCGCCGCCAAGGCCTCTTCACCTGCCACGTGATGGGCTCGCCGCCGGCTCTCATCGATGGCACCTTGTACTTCCT
GGCCAAGCAGCGGGACCGAGACAGGAAGCCTGACAGCCTGATGATCATCGACGTGGCCACCGAGACATGCTGCACGTGCC
GCCTCCCCATCTACTACACAGATGAAGCAGTGGCCCATGTCCTGGAGCTTCAAGGCCGCCCAAGCGTCGCCATGCATGAA
CTCAGCCCGATGAACCGCCTCCAGTTCTTGGTCCTTTCGTCGTCGGCTCCGCTCTGCTGGCAGCTGCGCTACATCTTTGA
GATGGGCGCCACTCACCTTGTCCACCAACCTCGCCAGTACTCCCACCTGAGGGCCGCCTGGTTCGACGCCAATGCCAACA
GTGATGACAACGCCGACACCAACGGCGGCATACTCTGCTACCTCTACGGTGACTGCGTGTACAAGTACGACACCTCGCAG
GACCAGCCATGCTTCGACAAGGTGTGGGATGATCAGAAGCAGCTGCACTTATCGGACATCAGCCGGAGCGTCCTTCCCGG
CTACCGTCCTAACCTACTCTCACCTGACGATCTCGCCATCACCCCGCGGCAAGCAGGAGAAGAGTTCGCGGTCGTGCTGC
TACGTGCACTCAGGGAGTTGAAGAAACGCCGCCGCTCGCCAAGCCCGCCCGCCACCGTGTGA------------------
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>chr6D_1_TraesCS6D01G006100
AAAATCCCTGCTCTGTTCTCCTTACTCCAGTTTTTTTCAGGTGGTGGCACTATTGAATACTACCTCCGTCCAAAAATACT
TGTCATCAAAATGGACAAAAAAGGATGTATCTAGGGATGTATTTATTTGGTCGTCCAAATAAATCATTTGCTCCTCTTTT
GTTTTATTAAAAAAAAAAGCAGCCAGGCTGGCCCATCGAACCTCCAAGGCCCATCCCAGGTCGACCTCCACCTAAGAAGG
CCCAACCCAGCCCCCACCCACTAAACCTAGCCGGCAGGCAGCCTCCCTCACCCACTCACTCGCCCGACCGACCTCCCCTC
AACCACTAAACCTAGCCGCCACCGGAAATTCCGCCGCCACCCGATCTAAAATTGCGGTGCTTGTCCACGCTCGACGATGG
AACCTGTGGCTGCCGACGAGGGCCGTCGCCCGCGGCCGCTGTGTGTCCACGCAGTGGCGCGGCCTCCTCTCCGACCCGGC
CTTCCTCGACGTCCACGCCCACTCCGCCCACGTCGTCTCCGGCGCCGGCGCCGCCGCGGAGGCGCTGCTGGTCTCCCAGA
CCGAGCCGGAGCCCGGCCTGGTCCCCAAGACGACCGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACCACTAAACCTAGCCGCCACCGGAAATTCCGCCG
CCACCCGATCTAAAATTGCGGTGCTTGTCCACGCTCGACGATGGAACCAGTGGCGGCCGACGAGATCCTCCTGCGCAAGA
TCTTGCTGGGGCTGCCGACGAGGGCCGTCGCCCGCGGCCGCTGTGTGTCCACGCAGTGGCGCGGCCTCCTCTCCGACCCG
GCCTTCCTCGACGTCCACGCCCACTCCGCCCACGTCGTCTCCGGCGCCGGCGCCGCCGCGGAGGCGCTGCTGGTCTCCCA
GACCGAGCCGGAGCCCGGCCTGGTCCCCAAGACGACCGTCTACAACGTCTCCACGGCGGCGACCATGTGCTTTCTCTACT
TG---CCCGCCGGGTACACCCCCGCCCAAGCCTGCAACGGCTTCGTCCTCTTCGTCGCCAACAACGCCAGCTGGCTGCCG
CTCGTCATCTGCAACCCCATCACCGGCGTCGAGCTGCCGGTTGACCCGCCGCTCAGGAGCGAGACGTCGTCGAGCGTGTT
CTGGAACTCTCACTGGCACATGGACGCCATGGGGTACAGCCCGTCGACGCGGGAGTACAAGCTCTTCCGCCTCTCCTTCT
CGGCCAGCGGCGACCAAGGGCTGCTCGATGTCAACTACCTGCAGGTGTTCACCTTGGGCCGTGGGCCGGGGGCAGGCGTG
TGGCGCCGCCGCCAAGGCCTCTTCACCTGCCACGTGATGGGCTCGCCGCCGGCTCTCATCGATGGCACCTTGTACTTCCT
GGCCAAGCAGCGGGACCGAGACAGGAAGCCTGACAGCCTGATGATCATCGACGTGGCCACCGAGACATGCTGCACGTGCC
GCCTCCCCATCTACTACACAGATGAAGCAGTGGCCCATGTCCTGGAGCTTCAAGGCCGCCCAAGCGTCGCCATGCATGAA
CTCAGCCCGATGAACCGCCTCCAGTTCTTGGTCCTTTCGTCGTCGGCTCCGCTCTGCTGGCAGCTGCGCTACATCTTTGA
GATGGGCGCCACTCACCTTGTCCACCAACCTCGCCAGTACTCCCACCTGAGGGCCGCCTGGTTCGACGCCAATGCCAACA
GTGATGACAACGCCGACACCAACGGCGGCATACTCTGCTACCTCTACGGTGACTGCGTGTACAAGTACGACACCTCGCAG
GACCAGCCATGCTTCGACAAGGTGTGGGATGATCAGAAGCAGCTGCACTTATCGGACATCAGCCGGAGCGTCCTTCCCGG
CTACCGTCCTAACCTACTCTCACCTGACGATCTCGCCATCACCCCGCGGCAAGCAGGAGAAGAGTTCGCGGTCGTGCTGC
TACGTGCACTCAGGGAGTTGAAGAAACGCCGCCGCTCGCCAAGCCCGCCCGCCACCGTGTGACGGCGACCAGGGAGGGAC
CAGCGTGGTCCATCATTTAAGTAGAAATTTACATTTTTCGATGCAAGTTAACAACATGTTTATACCATGGCATGTTTTCT
GGATTCAGATTCGACTCTAGAATCATTATATTTATCAATCAATTTCCCCCTCTTTGTTAATGAAGTTCTGAAATCACCTA
CACTGCAAGCATCTCACATTGAATTACAGAAGGCGCACAATGAATTTCTCAGAAAACAACTAGAAAGAGAGAAGGATTTT
ATAGAAGGCTCGCAATATGTGGGTATCCAATTAGAGATACTATCCCCAATCAGGACTAATAGGCTTGCTGTTCCTCCATG
GCTTTAGCAACAGAAAACTCATGACCTAAGTGCTAGGTACATAGAGTCAACAATGAAGGACTATTAGAAGTTAGATTCAA
ACAGACCACCTCTCTTCGTCGAGTTAGGCAAATTGAATCCAAAGAGGATAGAGATGTTATTATGACTCTAGACGGGAGCC
GATCAAACCCTGCCAAAATAAAATACCCAGCAGGGAGGAGTTGAGCGCTTGTGCAAGAGTATCATTCTTATCGCGTAAAA
TACGCCACGATGTTGTATAATGTTCCCGGAGTGTGGCGTCTCCCATCCACTTGTTTTCCCAAAAGAAGATCTTAGAGCCG
TCTTTTATCACGAAAGATTGAAAGTTGAATCTAGAGGCCTGTTTCGCCGTCATTCAAGTGAGGCTACCGAAGCACTGAGT
TCCACAAAATAGAAATGACGCTGCAGCTTATGAAGAGATGTTGGACCGATCCTTGCAATGAACTACAGAAACAACAAGAC
GCATCATGGGGAAAACCTCACTTTGCAAGTCAATCTCTGGTCCAAACATGCCCTGTAGCGACCAACCAATGGAAGAGTTT
GCATTTCAGTGGTGCCCATGTATTCCAAATGGAACCATCAGTGCTGAATATAGTTATCGGGCCGAAGTGAGCATTATAGA
TTGATTTTGTTGAGAACGTTCC
>chr3B_1029
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--------------------------------------------------------------------TCCTGCGCGAGA
TCCTGCTGAGGCTGCCGACGAGGGACGTCGGCCGCGGCCGCTGCGTGTCACAGCAATGGCGCGGTCTCCTCACCGACCCG
TACTTCATCGGCCTCCACGCCCACGCCGGCCACGTCGTCT------CCGGCGCCGCCGCGGAGGCGCTGCTCGTGTCCAA
GACCCATACACTGGGGTGGAGTCCTGAGCT---GACAGTGTTCAACGTGTCCACGGCGGCGACCATGTCCGTCGTGGCCG
GCCATCCGGACGGGTACAGCCCGACAAACGCCTGCAACGGCTTCCTCCTCCTCGCCGCCAACAACTTCATCTGGATGCCA
GTCTTCGTGTGCAACCCCATCACCGGCGACAAGCTACGGGTCCTGCCGCCGCCCATGAGCGAGACCGACTTCCGCATCCA
CGGTCACGGGT------------ACGCCATGGGGTACAGCCCGTCGACGCGGCAGTACAAGCTCTTTCGCCTCTCCTTCT
CCTCCTACGAGGGTCTGCACCAG---------AACTACGTCCACGTGCTCACCCTGGGCGGCGCCGATGGC---GGCATG
TGGCGCCGGCACCGGGGGCTCTACCGGTGCCACCGGATGGGCTCATGGCCGGCGCTAATCGA------------------
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>chr3A_1029
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--------------------------------------------------------------------TCCTGCGCGAGA
TCCTGCTGAGGCTGCCGACGAGGGACGTCGGCCGCGGCCGCTGCGTGTCACAGCAATGGCGCGATCTCCTCACCGACCCG
TACTTCATCGGCCTCCACGCCCACGCCGGCCACGTCGTCT------CCGGCGCCGCCGCGGAGGCGCTGCTCGTGTCCAA
GACCCATACGCTGGGGTGGAGCCCTGAGCT---GACAGTGTTCAACGTGTCCACGGCGGCGACCATGTCCGTCGTGGCCG
GCCACCCGGACGGGTACAGTCCCACAAACGCCTGCAACGGCTTCCTCCTCCTCGCCGCCAACAACTTCATCTGGATGCCA
GTCTTCGTGTGCAACCCCATCACCGGCGACAAGCTACGGGTCCTGCCGCCGCTCATGAGCGAGACCGACTTGCGCATCCA
CGGTCACGGGT------------ACGCCATGGGGTACAGCCCGTCGACGCGGCAGTACAAGCTCTTTCGCCTCTCCTTCT
CCGCCTACGACGGTCTGCACCGG---------AACTACGTCCACGTGCTCACCCTGGGCGGCGCCGATGGC---GGCATG
TGGCGCCGGCACCGGGGGCTCTACCGGTGCCACCGGATGGGCTCATGGCCGGCGCTAATCGA------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S---
--S-----S---------------S-----S------------S-----SSS---S--------S------S--------
SS----S---S-S-----------S---S-----------SSSSSS-------------------------S--S---S-
----S-SS--SS-SSSS-SSSSSSSSSSSSSSS---S--S-S------S-------------------S-S-SS-SSS-S
SS-----S-S--------S----S-SS-S---------------S-----S---S----------SS--S----S----S
S--S--S-S-------------------S-S----S-S---SSSS----------S---------SSSS-S-S--S-SSS
-S-SS--SSSSSSSSSSSSSSSS-----------------------------S-------------S-------------
-S---SS--S--SS-SSSSS-S-SSSSSSSSS------S-S--S---S-----S-----S-S-SSSSS--SSSS---S--
--------S-S--SS--S----S-SSS------SS---------SSS------S--S-----SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS
>forward_388
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------------------------------------------------AAATTGCGGTGCTTGTCCAC------------
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>reverse_2177
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----------------CTCTCACCTGACGATCTCGC--------------------------------------------
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>forward_1816
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------------------------------------ATGTCCTGGAGCTTCAAGGC------------------------
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>reverse_2842
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-----------------------------------------TGAGCGCTTGTGCAAGAGTA-------------------
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