>input_sequence_55131
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--------ATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTTGTTCTTATGGTGGTGGCCGGGCTGCTGCTGCTGGCG
TGCGCGCCGCCGGCCGCTGCCGTGGACGTCCAGGCGGTGCTCGCGCCGTTCCCCGACCTCGCCGGCTTCGCGCGCCTGCT
CGCGTCCAGCCCCGTGGCCCGGGAGCTGGCCGGGCGGTCCTCGCTGACGCTGCTCGCCGTGCCCAACGCCGACCTCCCGC
AGTCGCCGTCGGCGTTCGCGGCCGCCGCGGGGGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCCGCCGACCTCCGCCGCCTCCCGGCCGCCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCGCGCCTCCGC
CGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCCAGCCTGGGCGTCGTCCGCTCGC
CGGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTCAGCGTGCTCGCC
GTGGACGGGCTCATCGTGCCGTCCGGCTTCGACCTGGCGGCGTCCGAGTCC------CGGCCCCCCGCCGCCGTGAACAT
CACCCGCGTCCTGGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCGTCCGGCGTGGCGGAGGAGTTCG
AGGGCGACGAGCGCGGCGCGGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCCGGCGACCGG
CTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTCCGCTTCCACGTCCTCCACTCCTACTACCCGCTGGGGTCGCT
GGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCCTCAACATCA
CCCGCTCCAACGGCTCCGTGGCCATCGACACCGGCGTCGTCCAGGCCACCATCACGCGCACCGTGTTCGACCAGAACCCC
GTGGCCGTCTTCGCCGTCTCCAAGGTGCTGCTCCCCAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGTCGTGGCCGC
GGCCCTGGCGCCCCCGCCAGCCACCTCGAACTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGCCGACGAAGC
TGTCCTCGCCGCCCGCGCTGCGCGGCGTGACCAGGAACGACACTGCGGTTTCGCCGCCGTCGTCGTCGTCGGCAAAGGCA
GCAGCAATTGGGTGGTGGTGTATAGCATTGTTGTATC---------TACTGCTGCCTCTGGTATGA--------------
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----
>chr1B_1_TraesCS1B01G293800
GGATTTGAATGGCTGGTCTGGTCTGGTCCCCCGGGAGCATTGGAGACCCGATGAGAAACATTCTTTCCATCACGCTCGAT
CGGTTCCAATACAAC----TCTATACGAGATCTTATCAAGCTGATAGTAGTATATCACCGCTCGCTTGCGTGCTTTTGCG
GCCACTTTGGAGCAAAATCAATTCGCGGTAAAGCTTAGCCTCCCTCAATCATTCTACGGTAAAGCTACTCCATCAAAATC
ATTTTACGGCAAAGCTACTCACTCCTTTCATAAACTGTTTTTATCCAAGCAGAGTACTCGC-CTCGTCCCATGT---TAT
CTCATCAGCACCCGGACCCGCAAAAGATTCTATCCATGCTACACTTGTCTTTATAAACTTACCATTACCGCACAGAGCCA
CAACAGTGGGCAATTAAACCCGGC-----CCGGGCCAGCATGACAGCGGGACCCACGCCACGCCCGGGCGGACTCGGCTC
CCCTGACGTACTGCAGGGCGCAGTTGGGTCGCTGACAGGTGGGCCAACTTGCTTTCGGGCCCACCTGTCAATGGCCCAAC
TGCGCCCTGCAGTACGTCAGAGGAGCCTCGTCCCGCCCGGGGGCGCCATCATTACGGGCCTTTTCCCGAATAGTGCCGTG
TGCATGGGAGCTTGGTCACTGGCTGGCAGTGTAGTCCAGTCCAGTTCTTCTCCCTCCTCGCTGGAGCCCCTGCTACACTC
CAC------------TCCAGACCCACCCACCCGCCATTAATTTCCACAAAACGCGAATCTCAACGCGCGGAACAAAGGCT
TTGCACTTCCCTCGCACTGAACCCAACCAGACCCAACCCC-CAGATGTTTAA---TCGGCCGCGATTTTTGTGCTGAGAA
AAAAATA------GCGCCGAGGAAATATTCATTCCACTCTGGGGCTCGGCTCGGCTCA------CCATCCCCCACCCCCA
CCGCATCTCAGGCTCACCTCACTCCTCG-------GGCCAGTGGTCAGTGGAGCTGCTGCTCTGCTCTGCTCCCGGCGGC
GCGGCGAGATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTTGTTCTTATGGTGGTGGCCGGGCTGCTGCTGCTGGCG
TGCGCGCCGCCGGCCGCTGCCGTGGACGTCCAGGCGGTGCTCGCGCCGTTCCCCGACCTCGCCGGCTTCGCGCGCCTGCT
CGCGTCCAGCCCCGTGGCCCGGGAGCTGGCCGGGCGGTCCTCGCTGACGCTGCTCGCCGTGCCCAACGCCGACCTCCCGC
AGTCGCCGTCGGCGTTCGCGGCCGCCGCGGGGGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCCGCCGACCTCCGCCGCCTCCCGGCCGCCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCGCGCCTCCGC
CGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCCAGCCTGGGCGTCGTCCGCTCGC
CGGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTCAGCGTGCTCGCC
GTGGACGGGCTCATCGTGCCGTCCGGCTTCGACCTGGCGGCGTCCGAGTCC------CGGCCCCCCGCCGCCGTGAACAT
CACCCGCGTCCTGGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCGTCCGGCGTGGCGGAGGAGTTCG
AGGGCGACGAGCGCGGCGCGGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCCGGCGACCGG
CTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTCCGCTTCCACGTCCTCCACTCCTACTACCCGCTGGGGTCGCT
GGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCCTCAACATCA
CCCGCTCCAACGGCTCCGTGGCCATCGACACCGGCGTCGTCCAGGCCACCATCACGCGCACCGTGTTCGACCAGAACCCC
GTGGCCGTCTTCGCCGTCTCCAAGGTGCTGCTCCCCAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGTCGTGGCCGC
GGCCCTGGCGCCCCCGCCAGCCACCTCGAACTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGCCGACGAAGC
TGTCCTCGCCGCCCGCGCTGCGCGGCGTGACCAGGAACGACACTGCGGTTTCGCCGCCGTCGTCGTCGTCGGCAAAGGCA
GCAGCAATTGGGTGGTGGTGTATAGCATTGTTGTATC---------TACTGCTGCCTCTGGTATGAGATCCGGCGGTGAG
CTAGTC-GTCCATTGCCGTCTCCTTGCTGAGCTCAATTCTTTTTTGCCTTGCTTTTGTTACAATTGTTTCTTCTTTGTTA
CTCCTGC---TAGTATATTACTAGGAGTTAACCTGTACACAATGGGGTTTGAAAAGTGGGGGAGAAGGTAGATGACTCGA
G-------GTGGAGAAGATTGAGCTGCAAAGCAAAGCGGCATTCTTTTTACTGCCCGCGTCATGCTGAAAAAGGAGAAAT
GATCGCACCATCCTGTAAAGAATCACACGCGACCAGCCGACGACAATGTTAAATGTTGGTTCTACCAGGGCTGTTTCTCC
GTGGA-----CGCAGCGCAAGCTGCTT-CCATTTTGCT----GAATCGGGCGACGGAAGTGAGTGGGGAAGGGGGCTTGC
GGC--------------CGGGGTGCGCGCACCGGTGGCGGTGAGGGGAGAGGCGAGT----GGGTGGTAGGTGGGGTGGC
AGTGAGCTGGCGGGGCGTGGGGGTGGCTC-GGCCGTCGTCACAGGCGTCAGCGCGCGCGCCCCCCGCTAGATTCGATCGC
CTTTTCGGCTTGCGTCCGTCTCCCCGCCACCGCCACCGCCACCGCCACTTGCGTGTCCGCTTCTTGTCGCCTCCCGCCGC
GTCACCCC-GCGCTCTCGTCTCCACCCTCGCCGTGGCAGCGCGTGACACGACTTGCTTGTGGTCTCAGCCGTCGACTGCC
CGGTAGCAGTTCAGAGCGGAAAGCGTGCCCTGCGCAACTTCTCAC----CCGGCCTTATCCTCATTTCGGGGACAAGCCG
CGTCGCACATCCACATGCGCATCAGCGCGGCGGGGCCTCCTCGTGCCTGACACATGAATGAGCTCGAGCCCACCTCTAGT
GAGCTCACTCGACCCGA------TCGATCTCCCTTGACAT---CGTCACCAGGCGAGGCATGCAGAG-AAGACGACGACG
ATGCCCACGCCACGAGAGCGGCGATCACGCCCACGCCGGCAAC---GGGACTGGAAACCCTTCTTCAGGTCTGTCGACGC
CGCT
>chr1D_1
GGATTTGAATGGCTGCTCTGGT--GGTCCCCCGGGAGCTCTGGAGAACCGATGGGAAACATTCTTCCCATCACGCTTGAT
CGGTTCCAATACAAC----TCTACACGATCTGATCAAGTTCA-----TAGTATATCACCCCTCGCTTGCGTGCTTTTGCG
GCCACTTTGGAGCAAAATCAATTCGCGGTAAAGCTTAGCCTCCCTCAATCATTCTACGGCAAAGCTACTCCATCAAAATC
ATTTTACGGCAAAGCTACTCCTCTCATACTT-AACTGTTTTTATCCACGCAGAGTACTGGC-ATCGTTCCATGT---TAT
CTCATCAGCACCCGGACCCGCAAAAGATTCTATCCACGCTGCACTTGTCTTTATAAACTTACCATTACCGCACAGAGCCA
CAACAGTGAGCAATTAAACCCGGGTCGGGCCGGGCCAGCATGACAGTGGGGCCCGCGCCGCGCCCGGGCC----------
--------------------------------------------------------------------------------
-------------------------------------------CGCCATCATTACGGGCCTTTTCCCGAATAGTGCCGTG
TGCATGGGAGCTTGGTCACTGGCAGTGTAGTAGT-------------------CTCCTCGCTGGAGCCTCTGCTACACTC
CA----ACTCCAGAGTCCAGACCCACCCACCCGCCATTAATTTCCACAAAACGCGAATCTCAACGCGCAGAACAAAGGCT
TTGCACTTCCCCCGCACTGAACCCAACCAGACCCAACCCCGCAGATGTTTAA---TCGACCGCGATTTTTGTGCTGAGAA
AAAAATA------GCGCCGAGGAAATAT-----------TGGGGCTCGGCTCGGCTCA------CCACCCCCCACCCCCA
CCGCATCTCAGGCTCACCTCACTCCTCG-------GGCCAGTGGTCAGTGGAGCTGCTGCTCTGCTCTGCTCCCGGCGGC
GCGGCGAGATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTCGTCCTTGTAGTGGTGGCCGGGCTGCTGCTGG-----
-------CGCCGGCCGCTGCCGTGGACGTCCAGGCGGTGCTCGCGCCGTTCCCCGACCTCGCCGGCTTCGCGCGCCTGCT
CGCGTCCAGCCCCGTGGCCCGGGAGCTGGCCGGGCGGTCCTCACTGACGCTGCTCGCCGTGCCCAACGCCGACCTCCCGC
AGTCGCCCTCGGCGTTCGCGGCCGCCGCGGGCGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCCGCCGACCTCCGCCGCCTCCCGGCCACCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCGCGCCTCCGC
CGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCCAGCCTGGGCGTCGTCCGCTCGC
CGGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTGAGCGTGCTGGCC
GTGGACGGGCTCATCGTGCCCTCCGGCTTCGACCTGGCGGCGTCCGAGTCC------CGGCCCCCCGCCGCCGTCAACAT
CACCCGCGTCCTCGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCGTCCGGCGTGGCGGAGGAGTTCG
AGGGCGACGAGCGCGGCGCGGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCCGGCGACCGG
CTCCAGTCCCTCCCCGCCGACCGCAAGGCGGTGGTGCTCCGCTTCCACGTCCTCCACTCCTACTACCCGCTGGGGTCGCT
GGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCCTCAACATCA
CCCGCTCCAACGGCTCCGTGGCCATCGACACCGGCGTCGTGCAGGCCACCATCACGCGCACCGTCTTCGACCAGAACCCC
GTGGCCGTCTTCGCCGTCTCCAAGGTGCTCCTCCCCAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGTCGTCGCGGC
GGCCCTGGCGCCCCCGCCGGCCGCCTCGAACTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGCCGACGAAGC
TGTCCTCGCCGCCCGCGCTGCGCGGCGGGGCCAGGAACGACACTGCGGTTTCGCCGCCGTCGTCGTCGACGGCAAAGGCA
ACAGCAATTGGGCGGTGGTGTATAGAATTGTTGTATGTACTACCAGTACTGCTGCCTCTGGTATGAGATCCGGTGGTGAG
CTAGTC-GTCCATTGCCGTCTCCTTGCTGAGCTCAATTCTTTTTTGCCTTGCTTTTGTTACAATTGTTTCTTCTTTGTTG
CTCCTAC---TAGTATATTACTAGGAGTAAACCTGTACACAAT-GGGTTTGAAAAGGTGGGGAGAAGGTAGATGACTCGA
G-------GTGAAGAAGATTGAGCTGCAAAGCAAAGCAGCGTTCTTTTCACTGCCTGCATCATGCTGAAAAAGGAGAAAT
GATCGCACCATCCTGTAAAGAATCACACGCGACCGGCCGACGACAATGTTAAATGTTGGTTCTACCATTGCTGTTTCTTC
GTGGA-----CGCAAGCTGCTTCCATGGCCATTTTGCT----GAATCCGGCGACGGAAGTGGGG------AAGTGGAGCG
GAGGTGGAGGGAGGTTGCGGGGTGCGCGCACCGGTGGCGGTGAGGGGAGAGGCGAGGGGCCGGGTGGTAGGTGGGGTGGC
AGTGAGCTGGCGGGGCGTGGGGGTGGCTCGGGCCGTCGTCACAGGCGTCAGCGCGCGCGCCCCC-GCTAGATTCGATCGC
CTTTTCGGCTTGCCTCCGTCG------------------CACCGCCACTTGCGTGTTCGCTTCTTGTCGCCTCCCGCCGC
GTCACC------------------------CCGTGCCAGCGCGTGACACGACTTGCTTGTGGCCTCGGCCGTCGACTGCC
CGGTAGCAGTTCAGAGCGGAACGTGTGCCCTGCCCAACTTCTCACCCGGCCGGCCTTATCCTCATTTCGGGGACAGCTCG
CGTCGCACATTCACATGCGCATCGGCGCGGCGGGACCTCCTCGAGCCTGACGCATGAATGAGCTCGAGCCCACCTCTGCG
TGGACTCCAGCGATCGGCCTCACTCGATCTCCCTGCACAT---CGTCACCAGGCGAGGGATGCAGAG-AAGACGACGACG
GTGC-----CCACGAGAGCGGCGATCGCGCCCACGCCGGCAACAACGGGACTGGGAACCCTTCTTCCGGCCTGTCGACGC
CGCT
>chr1A_52
---------------------------------------------------TGAGAAACATTCTTTCCATCACGCTTGAT
CGGTTCCAATACAGCTCTATCTATACGATCTTATATCAAGCTGATAGC---ATATCACCGCTCGCTTGCGTGCTTTTGCG
GGCACTTTGGAGCGAAATCAATTCGCGGTAAAGCTTAGCCGCCCTCAATCATTCGAAGGCAAAGCCACTCCATCAAAATC
ATTTTACGGCAAAGCTACTCACTCCTTTCATAAACTGTTTTTATCCAGGCGGAGTACTCGCGCTCGTCCCATGTTAGTAT
CTCATCAGCACCCGGGCCCGCAAAAGATTCTATCCACGCTGCACCTGTTTTCATAAACTTACCATTACCGCACAGAGCCA
CAACAGTGCGCAATTAAACCCG--------------AGCATGACAGCGGGACCCACGCCGCGCCCGGGCC----------
--------------------------------------------------------------------------------
-------------------------------------------CGCCATCATTGCGGGCCTTTTCCCGAATAGTGCCGTG
TGCATGGGAGCTTGGTCACTGGCTGGCAGTGTAGTCCAGTCCAG---------CTCCTCGCTGGAGCCTCTGCTACACTC
CACTCTACTCCAGAGTCCAGACCCACCCACCCGCCATCTATTTCCACAAAATGCGAATCTCAACGCGCGCAACAAAGGCT
TTGCACCTCCCCCGCACTGAACCCAACC---------CCC-CAGTTGTTTAGCAGTCGGCCGCGATTTTTGTGCTGAGAA
AAAAATACTACTAGCGCGGAGGAAATATTCACTCCGCTCGGGGGCTCGGCTCGGCTCAGGCTCACCACCCCCCACCCCCA
CCGCATCTCGGGCTCGCCTCACTCCTCGGGTCAGTGGCCAGTGGTCAGTGGAGTCG-----CTGCTCTGCTCCCGGCGGC
GCGGCGAGATGCGGGGGCAGGGGCAGATCTCCCGCCGGCTGGTCGTGCTTGCGGCGGTGGCCGGGCTGCTGCTGCTGGCG
TGGGCGCCGGGTGCGGCTGCCGTGGACGTCCAGGCGGTGCTCGCCCCGTTCCCCGACCTCGCCGGCTTCGCGCGCCTGCT
CGCGTCCAGTCCCGTGGCCCGCGAGCTGGCCGGGCGGTCCTCGCTGACGCTGCTCGCCGTGCCCAACGCCGACCTCCCCC
AGTCGCCCTCGGCGTTCGCGGCCGCCGCGGGCGCCGACCTCGCCGACGTGCTCCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCCGCCGACCTCCGCCGCCTCCCGGCCGCCGGGAAGCTGGTCACCACGCTGTTCCAGACCACCGGCCGCGCCTCCGC
CGACCTCGGCGCCGTCAACGTCACGGCCGCCG---------------------GGCCGGGCCTCGGCGTCGTCCGCTCGC
CCGCGCCCTTC---CCCGGGTCCAACGCCACCGTGCTCGGCTCCGTCACCTCCGTGCCGTACAACCTGAGCGTGCTGGCC
GTGGACGGCCTCATCGCGCCCTCCGGCTTCGACCTGGCGGCCTCCGAGTCC------CGCCCCCCCGCCGCCGTCAACAT
CACCCGCGTCCTCGCCGACGCGCGCGGGTTCAACGTGGCGGCGTCCATGCTGGAGGCCTCCGGCGTGGCGGAGGAGTTCG
AGGGCGACGAGCGCGGCGCCGGCATCACGGTGTTCGTCCCCACCGACGACGCCTTCGCCAGCCTCCCCGCCGGCGACCGG
CTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTCCGCTTCCACGTCCTCCATTCCTACTACCCGCTGGGGTCGCT
GGAGTCGATCGTGAACCCGCTGCAGCCGACCCTGGCCACCGAGTACGCCAGCCAGGCCGGCCGCTTCACCCTCAACATCA
CCCGCTCCAACGGCTCCGTAGCCATCGACACCGGCGTCGTGCAGGCCACCATCACGCGCACCGTCTTCGACCAGAACCCC
GTCGCCGTCTTCGCCGTCTCCAAGGTGCTGCTCCCAAAGGAGATGTTCACCAGGGCCGACTCGGCCGCCGTCGTCGCCGC
GGCCCTGGCGCCCCCGCCGGCGGCCGCCAGCTCGATGCCGCCGGAGCCGCCCGAGAGCGCGCGGACGCCGCCGACGAAGC
TGTCCTCGCCCCCCGCGCTGCGCGGCGGGGCCAGGAACGGCACCGCGGTTTCGCCGCCGTCGTCGTCGGCGGCAAAGGCA
ACGGCAACTGGGCGGTGGTGTATAGCATTGTTGTATGTACTACCAGCACTGCTGCCTCTGGTATGAGATCCGGTGGTGAG
CTAGTCCGTCCATTGCCGTCTCCTTGCTGAGCTCGATTCTTTTTTGCCTTGCTTTGGTCACCATTGTTTCTTCTTTGTTT
TACTGCTATATAGTATATTACTAGGAGTGAACCTGTACACAAT-GCATTTGGAAAG-GGGGGAGAAGCTAGATGACTCGA
GTCGAGGTGTGAGGAAGATTGTGCTGCAAAGCAAAGAAGCGTTCTTTTCACTGCCCGCGTCATGCTGGAAAAGGGGAAAT
GATCGCTCCATCCTGTAAAGAATCACACGCGACCAGCCGACGACACTGTGAAATGTTGG---------TGCTGTTTTTTG
GTGGACGCACCGCAAGCTGCTTCCATGGCCATTTTGCTTGCTGAATCGGGCGACGGAGTTTGGGAAGCGAAAGTGGAGAG
GAGGTGGATGGAGCTCGTGGGGTGTGCGTACCGGGGGCGGTGAGGGGAGAGGCGAGGGGCCGGGGGGTAGGTGGGGTGGC
AGTGAGCTGGCGGG-CGTGGGGGTGGCTCG-GCCGTCGTCACAGGCGTCA----------CCCC-GCTAGATTCGATCGC
CTTTTCGGCTGGCGTCCGTCGCCCCGCCACCGCCACCGCCACCGCCACTCGCGTGTCCGCTTCTTGTCGCCTCCCGCCGC
GTCACCCCCGCGCCCTCGTCTCCACCCGCGCCGTGCCAGCGCGTGACACGACTTGCTTGTGGTCTCGGCCGTCGACTGCC
AGGTAGCAGTTCAGAGCGGAACGTGTGCCCTGCCCAACTTCTCACCCGGCCGGCCTTATCCTCATTGCGGGGACAGCTCG
CGTCGCACATTCACATGCGCATCGGCGCGGCGGGACCTCCTCGTGCCTGACACATGAATGAGCTC---------------
------ACTCGACCCGA------TCGATCTCCCTGAACATCGTCGTCACCAGGCGAGGGACGCAGAGAAAGACGACGACG
GTGC-----CCACGAGAGCGGCGATCACGCCCACGCCGGCAACAACGGGACTGGAAGCCCTTCTTCCGGCCTGTCGACGC
CGCT
>chr3D_1052
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-----------------------------------------------------------GCCGCGCTGCTGCTGCTGCTG
CCCGCCCCGGCCGCCGGGGTCA---ACGTGACGGCCGTGCTCGCGGCGTTCCCCGGCTTCTCCGACTTCGCGCGGCTGCT
GGCGTCCTCCCCGGTGGCCGCGGAGCTGGCGGGGCGGTCGTCGCTCACGCTGCTGGCCGTGCCCAACGCCAACCTGCCGC
GCTCACCCTCCGCTTTCGCCGCGGCCGCCGGCGCCGACCTCGCCGACGTGCTGCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCGTCCGACCTCGCCCGCGTCCCCGCCTCGGGCAGGCTCGTCACCACGCTCTTCCAGACCACCGGCCGCGCGCCCTC
CGACCTCGGCGCCGTCAACCTCACGGCCACTGCCGCGGGCG---------------CGGC---CGTCGTCGTCCGGTCGC
CGTCCCCGTCC---CCGGGGTCGAACGCCACCGTCCTCGGCGCCGTCACCAGGGAGCCGTACAACCTCAGCGTGCTGGCC
GTGGGCGGCCTCATCGTGCCCTCCGGCTTCGACATCGCCGCGTCGGGCTCCGAGAGCCGCCCGTCCCCCGCGGTGAACAT
CACCCGCGTCCTCACCGACGCGCGGGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCGGGCGTGGCGGACGACTTCG
AGGCCGACGAGCGCGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCCTTCGCGGCGCTCCCGGCCACGGACCGC
CTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTGCGCTTCCACGTGCTGCACTCCTACTACCCGCTGGGGTCCCT
CGAGTCCATCGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCACCG---AGGCCGGCCGCTTCACGCTCAACATCA
CGCGCTTCAGCGGCTCCGTCGCCATCGATACGGGCGTCGTGCAGGCGTCCATCACTCGCACGGTGTTCGACCAGAATCCC
GTCGCGGTCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTCA-------------------------------
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----
>chr3A_1052
GCCGCGCT------------------------------------------------------------------------
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----------------------------------------------------------------GCTGCTGCTGCTGCTG
CCGGCCCCGGCCGCCGGGGTCA---ACGTGACGGCCGTGCTCGCGGCGTTCCCCGGCTTCTCCGACTTCGCGCGGCTGCT
CGCGTCCTCCCCGGTGGCCGCGGAGCTGGCGGGGCGGTCGTCGCTCACGCTGCTGGCCGTGCCCAACGCCAACCTGCCGC
GCTCGCCCTCCGCCTTCGCCGCGGCCGCCGGCGCCGACCTCGCCGACGTGCTGCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCGCCCGACCTCGCCCGCGTCCCCGCCTCGGGCAGGCTCGTCACCACGCTCTTCCAGACCACCGGCCGCGCGCCCTC
CGACCTCGGCGCCGTCAACCTCACGGCCACTGCCGCGGGCGGCGGCAGCAGCAGCTCCGC---CGTCGTCGTCCGCTCGC
CGTCCCCGTCC---CCGGGGTCGAACGCCACCGTCCTCGGCGCCGTGACCAGGGAGCCGTACAACCTCAGCGTGCTGGCC
GTGGGCGGCCTCATCGTGCCCTCCGGCTTCGACATCGCCGCGTCGGGCTCCGAGACCCGCCCGTCCCCGGCGGTGAACAT
CACCCGCGTCCTCACCGACGCGCGCGGCTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCGGGCGTGGCGGACGACTTCG
AGGCCGACGAGCGCGGCGCCGGCATCACCATCTTCGTCCCAACCGACGACGCCTTCGCGGCCCTCCCCGCCACCGACCGC
CTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTGCGCTTCCACGTGCTGCACTCCTACTACCCGCTGGGGTCCCT
GGAGTCCATCGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCACCG---AGGCCGGCCGCTTCACGCTCAACATCA
CGCGCTTCAACGGCTCCGTCGCCATCGACACCGGCGTCGTGCAGGCGTCCATCACCCGCACGGTGTTCGACCAGAATCCC
GTGGCGGTCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTCA-------------------------------
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----
>chr3B_1060
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-------------------------------------------------------------------GCTGCTGCTGCTG
CCCGCCCCGGCCGCCGGGGTCA---ACGTGACGGCCGTGCTCGCGGCGTTCCCCGGCTTCTCCGACTTCGCGCGGCTGCT
GGCGTCCTCCCCGGTGGCCGCGGAGCTGGCGGGGCGGTCGTCGCTCACGCTGCTGGTCGTGCCCAACGCCAACCTGCCGC
GCTCGCCCTCCGCCTTCGCCGCGGCCGCCGGCGCCGACCTCGCCGACGTGCTGCGCTACCACGTCCTCCTCGAGTACCTC
TCCCCGTCCGACCTCGCCCGCGTCCCCGCCTCCGGGAGGCTCGTCACCACGCTCTTCCAGACCACCGGCCGCGCGCCCTC
CGACCTCGGCGCCGTCAACCTCACGGCTGCCG---------------------GCTCCGC---CGTCGTCGTCCGCTCGC
CGTCCCCATCC---CCGGGGTCGAACGCCACCGTCCTCGGCGCCGTCACCAGGGAGCCGTACAACCTCAGCGTGCTCGCC
GTGGGCGGCCTCATCGTGCCCTCCGGCTTCGACATCGCCGCGTCCGGCTCCGAGAGCCGCCCGTCCCCGGCGGTGAACAT
CACCCGCGTCCTCACCGACGCGCGGGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCTGGCGTCGCGGACGACTTCG
AGGCCGACGAGCGCGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCCTTCGCGGCCCTCCCGGCCACCGACCGC
CTCCAGTCCCTCCCCGCCGACCGCAAGGCCGTGGTGCTGCGCTTCCACGTGCTGCACTCCTACTACCCGCTGGGGTCCCT
CGAGTCCATCGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCACCG---AGGCCGGCCGCTTCACCCTCAACATCA
CGCGCTTCAACGGCTCCGTCGCCATCGACACCGGCGTCGTGCAGGCGTCCATCACCCGCACGGTGTTCGACCAGAATCCC
GTCGCGGTCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTC--------------------------------
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----
>chr4D_1287
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------------------------------------------------------GCTACCACGTCCTCCTCGAGTACCTC
TCCCCGTCCGACCTCGCCCGCGTCCCCGCCTCGGGGAGGCTCGTGACCGCGCTCTTCCAGACCACCAGCCGCGCGGCCTC
CGACCTCGGCGTCGTCAACCTCACGGCCGCAG---------------------GCTCCGC---CATCGTCGTCCGTTCCC
CCGCGCTGTCGGCTCCCGGGTCGAACGCCACCGACCTCGGCGCCGTCACCAGGGAGCCGTACAACACCAGCGTGCTCGCC
GTGGGCTGCCTCATCGTGCCCTCCGGCTTCGACACCACCGCGTCCGGCTCCGAGAGCCGCCCGTCCCCCGTGGTCAACA-
-----------TCACCGACGCGCGCGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCTGGCGTGGCGGACGACTTCG
AGGCCGAAGAGCGGGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCGTTCGTGGCCCTCCCCGCCACCGACCGC
CTCCAGTCCCTCCCCTCCGACTGCAAGGCCGTGGTGCTGC---------------ACTCCTACCACCCGCTCGGGTCCCT
C-AGTCCATTGTGAACCCCGTCCAGCCCACGCTCGCCACCGAGTGCAATG---AGGCCGGCCGCTTCATGCTCAATATCA
CGCGCTTCAACGGCTCCGTCGCGATCGACACCGGCGTCGTGCAGGCGTCCCACACCTGCACGGTGTTCGACCAAAATCCC
GTGGCGATCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTC--------------------------------
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----
>chr4A_1287
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------------------------------------------------------GCTACCACGTCCTCCTCGAGTACCTC
TCCCATTCCGACCTCGCCCGCGTCCCCGCCTCGGGGAGGCTCGTGACCACGCTCTTCCAGACCACCAGCCGCACGCCCTT
CGACCTCGGCGTCGGCAACCTCATGGCCGCAG---------------------GCTCCGC---CATCTTCGTCCGTTCCC
CCGCACTGTCGACTCCTGGGTCGAACGCCACCGAGCTCGGCGCCGTCACCAGGGAGCCGTACAACACCAGTGTGCTCGCC
GTGGGCTGCCTCATCGTGCCCTCCGGCTTCGACATCACCGCGTCCGGCTCTGAGAGCCGCCCGTCCCCCGTGGTCAACA-
-----------TCACCGACGCGCGCGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCCGGCGTGGCGGACGACTTCG
AGGCCGAAGAGCAGGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCGCTCGCGGCCCTCCCCGCCACCGACCGC
CTCCAGTCCCTCCCCTCCGACTGCAAGGCCGTGGTGCTGC---------------ACTCCTACCACCCGCTCGGGTCCCT
C-AGTTCATCGTGAACCCCGTCCAGCACATGCTCGCCACCGAGTGCAATG---AGGCCGGCAGCTCCACGCTCAATATCA
CGCGCTTCAACAGCTCCGTCGCGATCGACACCGGCGTCGTGCAGGCGTCCATCACCTGCACGGTGTTCGACCAAAATCCC
GTGGCGATCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTC--------------------------------
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----
>chr4A_1287
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------------------------------------------------------GCTACCACGTCCTCCTCGAGTACCTC
TCCCATTCCGACCTCGCCCGCGTCCCCGCCTCGGGGAGGCTCGTGACCACGCTCTTCCAGACCACCAGCCGCGCGCCCTT
CGACCTCGGCGTCGGCAACCTCATGGCCGCAG---------------------GCTCCGC---CATCTTTGTCCGTTCCC
CCGCGCTGTCGACTCCCGGGTCGAACGCCACCGAGCTCAGCGCCGTCACCAGGGAGTCATACAACACCAGTGTGCTCGCC
ATGGGCTGCCTCATCGTGCCCTCCGGCTTCGACATCACCGCGTCCGGCTCCGAGAGCCGCCCGTCCCCCGTGGTCAACA-
-----------TCACCGACGCGCGCGGGTTCAACGTGGCCGCCTCCATGCTCGAGGCCTCCGGCGTGGCGGACGACTTCG
AGGCCGAAGAGCGGGGCGCCGGCATCACCATCTTCGTCCCCACCGACGACGCGCTCGCGGCCCTCCCCGCCACCGACCGC
CTCCAGTCCCTCCCCTCCGACTGCAAGGCCGTGGTGCTGC---------------ACTCCTACCACCCGCTCGGGTCCCT
C-AGTTCATCGTGAACCCCGTCCAGCCCATGCTCGCCACCGAGCGCAATG---AGGCCGGCAGCTCCACGCTCAATATCA
CGCGCTTCAACGGCTCCATCGCGATCGACACCGGCATCGTGCAGGCGTCCATCACCTGCACGGTGTTCGACCAAAATCCC
GTGGCGATCTTCGCCGTCTCCAAGGTCCTGCTGCCCAAGGAAATGTTCGACC----------------------------
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----
>SNPs
---------------S------SS--------------SS------S-----------------------------S---
----------------------------SS-SS-----------------------------------------------
-----------------------------------------------------------S--------------------
-----------------------------------------------S--------------------------------
------------------------------------S---S---------------------------------------
--------S--------------S-----------------------------------S---------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------
--------------------------------------------SSSSSSSSS---------------S-----------
--------------------------------------------------------------------------------
-----------S--------------------------------------------------------------------
-------------------------------S---S-------------------------------S------------
--------------------------------------------------------------------------------
-------------------------------------------S--S---S-----------------------------
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--------------------------------------------------------------------------------
-------S-----------------------S------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
------------S-------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------S-----
------------------S---S---------------------------------------------------------
---------------------------S-S--------------------------------------S-----------
S-----------S-----------------------S------------------------------------S------
-------------------------------------------------------------------------------S
-----S----------------------S--------------S------------S-----------------------
-----------S-------------------------S--S-------S-------------------------------
-------------------------------------------------------------------SS---------S-
--------------SSSSSSSSSSS-S----------------------------------S-SSS-SS-SS-S-SSSSS
-SS-----------------------------------------------------S-----------------------
----------------------------------------------------------------S---------------
--------------------S-----------------------------------------------------------
-------------S-------------S-------S------------------------------S-------------
---------------------S-S---------S-----------------------------------------SSS--
----------S------------S----------S------------------------------------------SSS
SS-SSS----------------------------SS----------------------S---------------------
S---SSSSS---------------------------------------------------------S--S----------
----
>forward_586
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------CTGCAGTACGTCAGAGGAGC------------------------------------------------------
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----
>reverse_2524
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-------------------------------------------GGGGTTTGAAAAGTGGGGGA-----------------
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----
