>input_sequence_55090
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---------------------------ATGAAGCTCATCTGCGACTTCCCGTCGCCGAAGTCCCTGCCGGACAAGTACGT
CTTGCCGCCGGAGGAACGCCCTTGCAACCACGAGTTACGGGACGACCTCTCAGTCGCTCTCCCCGTCATCGACCTCCAAG
GAGCTCTTGGAGATGGCCGCCGACAGGTTATTGGCGACATCATGAAAGCCGGCAAGGAGTTTGGCTTCTTCCAGGCACGT
T-------------------GCCTTGCTTCGTTTCATTGCCAT------------GCATGTAATTTGCACACCTGAATCC
TGACCAGTTCTTGCATTGCATGCATGGGGCGTTGCAGGCGGTGAACCACGGTGTGGGGGAAGACGTGATCCAGGGCTTCC
GAGAAGCGGCGGCAGAGTTCTTCAGGATGCCGGCGGAGGCAAAACTCAAGCACTACTCCAACGAGCACAACAAGCATTGC
CGGGTCTTCTCCGGCTCCGTCACGTCCCACACTGACACCAACGACATCCGCTACTGGCGCGACTGTCTCAAGCTCCGGTG
CTACCCGGTGGACAAGCTGATGCACCATTGGCCATCACAGCCAGAAACATTTCGGTAGGAGTACATTCGTGTTGAT--TC
CTCTTACTCT----------------------------------------------------------------------
--------------------------------CACACGTAGCTATAGCGGCATTG--TTCATGGGTTGCAACCCG-CCAC
GCAGGGAGCGTCTTGCCAAGTACGCCGTGGCAGTGCAGGAGCTGGCACAAAGGCTCCTGCGACTCATCGCGGAGGGGCTC
GGCTTGGACAGTCAATTCTTCGAGGGCGAGCTCACCGGCGGGGAGACGATGATGAACGTGAACTACTACCCGCGATGCCC
TGAACCAAGCCTCACGTTGGGCATCCGGCCGCATTCAGACCGCTACATCCTCACGGTCCTGTCACAGGGCGATGTCAGTG
GTTTACAGGTGAAGCACAAGGGGCGCTGGATCGGTGTCCAACCCATGCGCAACGCGTTTGTTGTCAACTTTGGGCTTCAG
CTGGAGGTGAGGTCGCATCACACATCG---CATCTATCC------TATAGAAGAAGAGAGTAC------AT--GGTAGCT
AATTATATATGTTCTTGTGTAGATGGTGACCAACGGGGTGCTTACAAGCGTGGAGCACCGGGTGGTGACCAACTCGGCCA
AGGCGAGGATGTCGGTGGCAACGCTTATCAGGCCAAATATGGGCTGCAGGATTGGTCCGGCGCCGGTGATGGTGAATGGA
AAGACCAGCTATCGTCCTAAGTATAGGGACTTCACAGGGACTGAGCTCATCGAGGCGTACGAGGCCACTGCGGGCAACAG
GGAGGCCCTGCTTGAAATGTTCAGGATCCATCACACCAAGTAG-------------------------------------
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>chr3B_1_TraesCS3B01G479500
GGCATAATGGTCAGAGTGGTTGCATCTTGCAGACATATGATATGCTTGTTGCCTAACACTAGGTTTTATTTACTGAACTG
ATGCACTGGCTGCAGCGCCAGATTCCAAAATCAGCATGTGCGCTCCTCGTTATCAAAGGCAC----ATATGATCTTGACC
GAAATGAGCCGATCTAGAGCACCATTACTCTTTCATTTCTTGTCCGTATGGGGTAGCCACGTGACGCAGTAGGTTGCCAC
TCGCTCCCTGAGACGCGTCAGCCGTGACTGAGTAACAATGCCGGGGGGAAAGGCTATCACATTCATGCTACGTAAGGAGA
ATAGATAATTTATA------------------------------------------------------------------
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-------------------------------------------------------------------AGTGAGTACAGTG
TTAGCTGAACAGCTATACCACAGTAGGTACCCCCTTCGATCCAGGTCGCCGTTTTGAACTAAGATTGAGTGAAACCTTTT
GTAGTTTCAATCACTATTATTTGTGCCCCATCGATAAAATTCAATCACACAATTAAAACAATAACCACAAAAACATAAGT
GCAATTGTATCAAAATAAAGTGTAGTTGCAGGTGTCTCGTATTCAGATACACATGCACGTTTACTCTTTCACAATACGCA
TGGGACGGTGGCAATTTCTTTAGAAACACACACAATTTTCGACAAAAATAAGGACTTGCTGTAAAAATTGCCGTGTTCGC
TTCGAGAAATTGTCATGCACTGCACAATATAATTGCCGTGAAAAATGTTAATTTTGCCATTCTCTCGCACAGTCCGAGTG
AACTTTCATTGAATAACATTACCCGAATGTATAACTATTTATTTCTTCCTCTTTCTC-----CGTGTCAAAGAAGAGATG
CAGAGGAACAAGGCCCCTTCTCTAGTCTAGTGCCTTCTCAATCAAAAAGGG--GAAACAAATGCCTGCGGTAGGTAGGCC
TTCTCAAACTAGTATAAGTGCATGTGATCGAGTAGTG---CAATACACACAGAAGAAAAGTACTAGTATACAGTACAGAA
GTCGAAGCCAACAAGAAAAGTGAGACAATGAAGCTCATCTGCGACTTCCCGTCGCCGAAGTCCCTGCCGGACAAGTACGT
CTTGCCGCCGGAGGAACGCCCTTGCAACCACGAGTTACGGGACGACCTCTCAGTCGCTCTCCCCGTCATCGACCTCCAAG
GAGCTCTTGGAGATGGCCGCCGACAGGTTATTGGCGACATCATGAAAGCCGGCAAGGAGTTTGGCTTCTTCCAGGCACGT
T-------------------GCCTTGCTTCGTTTCATTGCCAT------------GCATGTAATTTGCACACCTGAATCC
TGACCAGTTCTTGCATTGCATGCATGGGGCGTTGCAGGCGGTGAACCACGGTGTGGGGGAAGACGTGATCCAGGGCTTCC
GAGAAGCGGCGGCAGAGTTCTTCAGGATGCCGGCGGAGGCAAAACTCAAGCACTACTCCAACGAGCACAACAAGCATTGC
CGGGTCTTCTCCGGCTCCGTCACGTCCCACACTGACACCAACGACATCCGCTACTGGCGCGACTGTCTCAAGCTCCGGTG
CTACCCGGTGGACAAGCTGATGCACCATTGGCCATCACAGCCAGAAACATTTCGGTAGGAGTACATTCGTGTTGAT--TC
CTCTTACTCT----------------------------------------------------------------------
--------------------------------CACACGTAGCTATAGCGGCATTG--TTCATGGGTTGCAACCCG-CCAC
GCAGGGAGCGTCTTGCCAAGTACGCCGTGGCAGTGCAGGAGCTGGCACAAAGGCTCCTGCGACTCATCGCGGAGGGGCTC
GGCTTGGACAGTCAATTCTTCGAGGGCGAGCTCACCGGCGGGGAGACGATGATGAACGTGAACTACTACCCGCGATGCCC
TGAACCAAGCCTCACGTTGGGCATCCGGCCGCATTCAGACCGCTACATCCTCACGGTCCTGTCACAGGGCGATGTCAGTG
GTTTACAGGTGAAGCACAAGGGGCGCTGGATCGGTGTCCAACCCATGCGCAACGCGTTTGTTGTCAACTTTGGGCTTCAG
CTGGAGGTGAGGTCGCATCACACATCG---CATCTATCC------TATAGAAGAAGAGAGTAC------AT--GGTAGCT
AATTATATATGTTCTTGTGTAGATGGTGACCAACGGGGTGCTTACAAGCGTGGAGCACCGGGTGGTGACCAACTCGGCCA
AGGCGAGGATGTCGGTGGCAACGCTTATCAGGCCAAATATGGGCTGCAGGATTGGTCCGGCGCCGGTGATGGTGAATGGA
AAGACCAGCTATCGTCCTAAGTATAGGGACTTCACAGGGACTGAGCTCATCGAGGCGTACGAGGCCACTGCGGGCAACAG
GGAGGCCCTGCTTGAAATGTTCAGGATCCATCACACCAAGTAGCTAGAGCCAACGCCCCAAACACACACACGCGCGCGCG
CGCGCACGCGCGCGCGCGCACGCGCGCACGCACATCCTGTCGACCATTGTTTTCTTAAGTTCATAGCGCATATAGTACGT
AGTTTATTACCCCCAACAATAAATGATTGTTAATCCGTGTATGCCGATCGACATGTGCAGTGGGTTGTTTTGAA-TTCGA
TATTGTCGCTATATTTTGCACTGCAATAAGGAACAGAGTAACTGGAGCTCCAAGGACCGACATGTAGCTTTGTTGTCTCA
AAATTAACTAATGTATGATATACTCCAAGAACAGAGTAATTGGAGTATATGGTACAAACTTCAGTGGTACATGATAGCTT
CTCTTATGTGAAATAAACGTCGACAAGTTCAGTATGCTACACTGGATCCTTCAGTGGCGAGGGGAAGCCGACCGGGAGGA
GGCAATGGAGGAGAAGGGG-TGCATACATTTTTGCATTATTGTGTTTGATTAGAGTCACTGCGTCTGA---------TTT
GAGGGACATCGTATCCCAACTTGCGCCACTATCCTCTGTTCAGCCTTCCACGTCTGGTCCAAGCGCCTGCTATTAGGCCG
CATCCCGTTGCCCGCCGTGCGGCATCGACCCGACCGTCGGAGCGATGGCGGTCATGCGAGAGGAGTTTGGCATGGGAGAT
TGTGCCGAGGTACAGTGCCTGCATGTACTTGCCAGAAATTGTGTACACAAAAAATGCAGTAAGAGTCACATGGATCTCGT
AAACACGTTTAAGCAGACGACATATAACATATGCAGAGTAGTGCACTGAAGCAGGGTCACATGGATTTGGTGAACACGCT
TAAGCCCCGTCCATCTTTGATCTTGCCACCAAAAAGGAGATCAAAGATCAGATTAGCATTTGCCACTGATGAAATTGACC
ACTTCGGCCACAGCTTGGTCCAGGGCCTTCGTAGCAGCAGTCAAGTTTTGAAGAAACTCCTCAGCCCTTGGCTTCTCTCC
ATCGACAATTTCAG
>chr3D_1
GGCATAATGGTCAGAGTGGTTGCATCTTGCAGACATATGATATGCTTGTTGCCTAACACTA----TTATTTACTGAACTG
ATGCCCTGGCTGCAGCGCCAGATTCCAAA-TCGGCATGCGCGCTCCTTGTTATCAAAGGCAC----ATACGATCTTGACC
GAAATGAGTCGATCTAGAGCACCATTACTCTTTCATTTCTTGTCCGTATGAGGTAGCCACGTGACGCAGTAGGTTGCCAC
TCGCTCCCTC--ACGCGTCAGCCGTGACTGAATAACAATGCCGGGGGGAAAGGCTATCACATTCATGCTACGGAAGGAAA
ATGGATAATT--TA------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------------------AGTAAGTACAGTG
TTAGCTGAACAGCTATACCACAATGGCTACTCCCTCCGATCCAAGTCGCGGTTTTGAACTAAGATTGAGTGAAACTTTTT
GGAGTTTCAATCACTATT---TGTGCCCCGTCGATAAGATTCAATCACACAATTAAAACAATAACCGCAAAACCATAAGT
GCAATTGTATCAAAATAAAGTGTAGTTGCAGGTTTCTCGTATTCAGATACACATCCACGGTTACTCTTTCACAAT----A
TGGGACGGTGGCAATTTCTTTAGAAACAGATGCAATTTCCGACAAAATTAAGGACTTGCTGTAAAAATTGCCATGTTCGC
TTCGAGAAATTGTCATGCACTGCACAATATAATTGCCGTGAAAA-TGTTCATTTTGCCATCCT--------CTCCCAGTG
AACTTTCATTGAATAACATTACCCAAATGTATAACTATTTATTTCTTCCTCTT-CTC-----CATGTCGAAGAAGAGATG
CAGAGGAACAAGGCCCCTTCTCTAGTCTAGTGCCTTCTCAATCAAAAAGGAAAAAAAA------------TAGGTAAGCC
TTCTCAAACTAGTATAAGTGCATGTGATAGAGTAGTAGTACAATACAGACAGAAAAG------TAGTATACACTACAGAA
GTCGAAGCCAACAAGAAAAGTGAGATAATGAAGCTCATCTGCGACTTCCCGTCGCCAAAGTCCCTGCCGGACAAGTACGT
GTTGCCGCCGGAGAAACGCCCTTGCAACCACGAGCTACAAGGCGACCTCTCAGTCGCTCTCCCCGTCATCGACCTCCAAG
GAGCTCTTGGAGATGGCCGGCGACAGGTCATTGGCGAGATAATGGAGGCCGGCAAGGAGTTTGGCTTCTTCCAGGCACGT
T-------------------GCCTTG-TTCGCTTCATTGCCAT------------GCATGTAATTTGCATTCCTGAATCC
TGACCAGTTCTTGCATTGCATGCATGGGGTGTTGCAGGCGGTGAACCACGGTGTGGGGGAAGACGTGATCCAGGGCTTCC
GGGAAGCGGCGGCAGAGTTCTTCAGGATGCCGGCGGAGGCAAAACTCAAGCACTACTCCAACGAGCACAACAAGCATTGC
CGGGTCTTCTCCGGCTCCGTCACGTCCCACACTGACACCAACGACATCCGCTACTGGCGCGACTGTCTCAAGCTCCGGTG
CTACCCGGTCGACAAGCTGATGCACCATTGGCCATCACAGCCAGAAACATTTCGGTAAGAGTACATTCGTGTTGATATTC
CTCTTATTCT----------------------------------------------------------------------
--------------------------------CACACCTAGCTATAGCGACATTG--TTCATGGGTTGCAACCCGGCCAC
GCAGGGAGCGTCTTGCCAAGTACGCCGTGGCAGTGCAAGAGCTGGCACAAAGGCTCCTGCGACTCATCGCGGAGGGGCTC
GGCTTGGACAGTCGATTCTTCGAGGGCGACCTCACCGGCGGGGAGACGATGATGAACGTGAACTACTACCCGCGATGCCC
CGACCCGAGCCTCACGCTGGGCATCCGGCCGCATTCGGACCGCTACATCCTCACGGTCCTGTCACAGGGCGACGTCAGTG
GTTTACAGGTGAAGCACAAGGGACGCTGGATCGGTGTCCAACCCATGCACAACGCGTTTGTTGTCAACTTTGGGCTTCAG
CTGGAGGTGAGGTCGCATCGCA--TCACACCACCTATCC------TGTGGAAGAAGAGAGTAGTAGTATAT--GGTAGCT
AATTCTACATGTTTTTATGTAGATGGTGACCGACGGGGTGCTCACAAGCGTGGAGCACCGGGTGGTGACCAACTCGGCCA
AGGCGAGGATGTCGGTGGCAACGCTTATCAGGCCGAATATGGGCTCCAGGATTGGTCCGGCGCCGGTGATGGTGAATGGA
GAGACCAACCATCGTCCTAAGTATAGGGACTTCACGGGGAGCGAGCTCATCGAGGCGTATGAGGCCACTGCGGGAAATAG
GGAGGCCCTGCTTGAAATGTTCAGGATCCATCACGCCAAGTAGCTAGACCCAACGCCAAACACACACACACA--------
------------------CACACACACACACACATCCT-TCGACCATTGTCTTCTTAAGTTCACAGTGCCGATAGTCCGT
AGTTTATTA-CCCCAACAATAAATGATTGTTAAATCGTGTATGCTGACCGACATGTGCAGTCGGTGGTTTTGATTTTCGA
TATTGTTGTTATATTTTGCACTGCAATAAGGAACAGAGTAATTGGAGCTCTAAGGACCGACATGTAGCTTTGTTGTCTCA
AAATTAACTAATTTGTGAAA-------------------------TATATGGTACAAACTTCAGTGGTACATGATAGTTT
CTCTTATGTGAAATAAACCTCAACAAGTTCAGTATGCTACACTGGATCCTTCAGTGGCAAGGCT----------------
-GCACTGGAGGAGAAAGGGGTGCATACATTTTTGCATTATTGTGTTTGATTAGAGTCACTGCGTGTCTGCGTCTGATTTT
GAGGGATATCGTATCCCAACTTGCGCCACTGTCCTCCGTTCAGCCTTCCACGTCTGGTCTGAGCGCCTGCTATTAGGCCG
CATCCCGGTGCCCGCCGGACGGCATCGACCCGACCGTCGGAGCCGTGGCGGTCACGCGAGAGGAGTTTGGCATGGGAGAT
TGTGCTGAGGTGCAGTGCCTGCCTGTACTTGCCAGAAACTGTGTGCACAAGGAATGCAGTAAGAGTCACATGGATCTCGT
AAACACGTTTAAGCAGATGACATATAACATATGCAGAGTAGTGCACTGAAGCAGGGTCACATG-----------------
------------------GATCTTGCCAACAAAAAGGAGATCAAAGATCAGATAAGCATTTGCCACAGACGAAATTGACC
ACTTCGGCCACAGCTTGGTCCAGGGCCTTCGTAGCAGCAGTCAAGTTTTGAAGAAACTCCTCTGCCCTTGGCTTCTCTCC
ATCGACAATTTCAG
>chr3A_1
GGCATAATGGTCAGAGTGGTTGCATCTTGCAGACATATGATATGCTTGTTGCCTAACACTAGGTTTTATTTACTGAACTG
ATCCCCTGGCTGCAGCGCCAGATTCCAAA-TCGGCACGCGCGCTCCTTGTTATCAAATGCATGCAGATACGATCTTGACC
GAAATGAGCCGATCTAGAGCACCATTACTCTTTCATTTCTTGTCCGTATGGGGTAGCCACGTGACGCAGTAGGTTGCCAC
TCGCTCCCTC--ATGCGTCAGCCGTGACTCAATAACAATGCC-GGGGGAAAGGCTATCACATTCATGCTACAGAAGGAAA
AAACAGATAATATAAGTACTCCTTTCGTCTAGGTGCGTAAGTTACCTTACGAAAATCAAATAATCTCAAAATACTTAGAT
ATGATACATTAACTTCCTTCTTGTTTCTTATTTCATGACATACCAATCAATAAAAAATGTGGGCCGTGCATGATTTCAGT
GACTTAAGACTACCAAACATGACATACAGTGGTTAGTTCATTGCATGCAATGCTATTAATTAGAAGAAAACATTAAGTTC
TCTTGTTTTTTCCTTTGTCTTAGTCGTGTTGCACAACCTAAGATGACTTATATACCTAGACGGAGGGAGTAAGTACAGTG
TTAGCTGAACATCTATACCACAATAGCTACTCCCTCTGATCCAAGTCGTGGTTTTGAACTAAGATTGAGTGAAACTTTTT
GAAGTTTCAATCACTATT---TGTGCCCCGTCGATAAAATTCAATCACACAATTAAGAAAATAACCGCAAAAACATAAGT
GCAATTGTATCAAAATAAAGTGTGGTTGCAGGTTTCTCGTATTCAGATACACATCCACGCTTACTCTTTCACAAT----A
TGGGACGGTGGC--------TAGAAACACATGCAATTTCCGACAAAAATAAGGACTTGCTGTAAAAATTGCCATGTTCGC
TTCGAGAAATTGTCATGCACTGCACAATATAATTGCCCTGAAAAATGCTCATTTTGCCATCCT--------GTCCCACTG
AACTTTCATTGAATAACATTACCCAAATGTATAACTATTTATTTCTTCCTCTTTCTCCGTGGCATGTCGAAGAAGAGATG
CAGAGGAACAAGGCCCCTTCTCTAGTCTAGTGCCTTCTCAATCAAAAAGGAAAGAAAAAAATGCCTGCGGTAGGTAGGCC
TTCTCAAACTAGTATAAGTGCATGTGATAGAGTGGTG---CAATACAGACAGAAAAG------TAGTATACGGTACAGAA
GTCGAAGCCAAGAAGAAAAGCGAGACAATGAAGCTCATCTGCGACTTCCCGTCGCCAAAGTCCCTGCCGGACAAGTACGT
CTTGCCGCCGGAGAGACGCCCTTGCAACCACGAGCTACAAGGCGACCTCTCGGTCGCTCTCCCCGTCATCGACCTCCAAG
GAGCTCTTGGAGATGGCCGCCGACAGGTCATTGGCGAGATCATGGAGGCCGGCAAGGAGTATGGCTTCTTCCAGGCACGT
T-------------------GCCTTGCTTCGTTTCACTGCCAT------------GCATGTAATCTGCGCTCCTGAATCC
TGATCAGTTCTTACATTGCATGCATGG--CGTTGCAGGCAGTGAACCACGGTGTGGGGGAAGACGTGATCCAGGGCTTCC
GTGAAGCGGCGGCAGAGTTCTTCAGGATGCCGGCCGAGGCAAAACTCAAGCACTACTCCAACGAGCACAACAAGCATTAC
CGGGTCTTCTCCGGCTCCGTCACGTCCCACACTGACACCAACGACATCCGCTACTGGCGCGACTGTCTCAAGCTCCGGTG
CTACCCGGTCGACAAGCTGATGGACCATTGGCCATCACAGCCAGAAACATTTCGGTAAGAGTACATTCGTGTTGATCC--
--CTTATACT----------------------------------------------------------------------
--------------------------------CTCACCTAGCTATAGCGGCATTGTATTCATGGGTTGCAACCC---CAC
GCAGGGAGCGTCTTGCAAAGTACGCCGTGGCAGTGCAAGAGCTGGCACAAAGGCTCCTGCGACTCATCGCGGAGGGGCTC
GGCTTGGATAGTCAATTCTTCGAGGGCGACCTCACCGGCGGGGAGACGATGATGAACGTGAACTACTACCCGCGATGCCC
CGACCCGAGCCTCACGCTGGGCATCCGGCCGCATTCCGACCGCTACATCCTCACCGTCCTGTCACAGGGCGACGTCACTG
GTTTACAGGTGAAGCACAAGGGACGCTGGATCGGTGTCCAACCCATGCGCAACGCGTTTGTTGTCAACTTTGGGCTTCAG
CTGGAGGTGAGGTCGCATCACA--TCG---CATCTACCC------TATGGAAGAAGAGAGCAC------AT--GATAGCT
AATTCTATTTGTTCTTGTGTAGATGGTGACCAACGGGGTGCTTACAAGCGTGGAGCACCGGGTGGTGACGAACTCGGCCA
AGGCGAGGATGTCGGTGGCAACGCTTATCAGGCCAAATATGGGCTGCAGGATTCGTCCGGCGCCGATGATGGTGAATGGA
GAGACCAACCATCGTCCTAAGTACAGGGACTTCACGGGGAGCGAGCTCATCGAGGCGTATGAGGCCACTGCGGGAAATAG
GGAGGCCCTGCTTGCCTTGTTCAGGATCCATCACACCAAGTTGCTATAGC------------------------------
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>chr3B_870
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-----------------------------------------------------GAAAAAAATGCCTGCGGTAGGTAGGCC
TTCTGAGACTAGTATAAGTGCATGTGATAGAGTAGTA---GAGTACACACA-AAAAG------TAGTGCAGTACTCAGC-
-TCGAAGCCAACAAGAAAAGTGAGACAATGAAGCTCATCTGCGACTTGCCGTCGCCGAAGTCCCTGCCGGACAAGTACGT
CTTGCCGCCAGAGAAACGCCCGTGCGACAACGAGCTACGGGACGACCTCTCGGTCGCTCTCCCCGTCATCGACCTCCGGG
GTGCTATGGGAGATGGCCGCCGACAGGTTATTGGTGAGATCATGGAGGCCGGCAAGGAGTTTGGCTTCTTCCAGGCACGT
TAGCTGATTAAATGGACGTTGCCTTGCTTTGCTTCATTGCCTTTTCGCCATGCAAGCATGTAATCTGCGGT---------
------GTTCCTGATATTCATGCATGCCGTTTTGCAGGTGGTGAACCATGGTGTGGAGGAAGACGTGATCCAGGGCTTCC
GAGAAGCGGCCGCGGAGTTCTTCAGGATGCCGGAGGAAGCAAAACTCAAGTACTACTCCAACGAGCCGAACAATCCATTC
CGGGTCTTCTCCGGCTCCGTCACGTCGCACACTGACACGAACGACATCCGCTACTGGCGCGACTGCCTCAAGCTTCGGTG
CTACCCGGTTGACAAGCTGATGCACCATTGGCCATTAGAGCCAGAAATATTTAGGTAAATGAACAATTTAAAGTCAATAA
TGATGAAGCTAGGAAGAACAGAAAATTGTTACACCATCCGATCCAAAATAAGTGTCGCGGTTTTAGTTCAAAACTTCAAA
TTAGGAGTAGTACATCCGTGTACTATCTATAACCCAGCTATATAATGCGGCATTG--TTTATGGGT------------AC
GCAGGGAGCGTCTTGCCAAGTACGCGGTGGAAGTGCAGGACCTGGCGCGAAGGCTCCTCCGGCTGATCGCCGAGGGGCTC
GGCTTGGATGATCAATTCTTCGAGGGCGACCTCACCGGCGGGGAGACGGTGATGAACGTGAACTACTACCCGTCATGCCC
CAACCCGAGCCTCACTTTGGGCATCCGACCGCACTCCAACCGCTACATCCTCACGATCTTGTCTCAGGGCGACGTCAGTG
GTTTACAAGTCAAGCAAAAGGGACGCTGGATCGGTGTCCAACCCATAGACAACGCCTTTGTTGTCAACTTTGGGCTTCAG
CTGGAGGTGAGGTCGCAA-------CG---CATCAATCTTACTGATGTCTAAGAAGAGAGTATACGTATGTGCGGTAGCT
AATTCTACATGTTTTTGCGTAGATGGTGACCAACGGGGTGCTTACAAGCGTGGAGCACCGGGTGGTGACCAACTCGGCCA
AGGCGAGGATGTCAGTGGCAACACTTATCAGGCCCAATATGGAGTGCATGATAGGTCCGGCACAGGTTATGGTGGATGGA
GACACCAACCC---TCCCAAGTACAGGGATTTCACGGGGAGCGAGCTCATCGAGGCGTATGAGACCACTGCTGGCAACAG
GGAGGCCCTGCTCGAAATGTTCAGGATCCATCACACCAA-----------------------------------------
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>SNPs
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----S------------------------S--S-----S--------S---------------------S----------
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---------SSS-------------------S----------------------------------------S-----S-
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----------------------------------------------------------------------S---------
----------------------S---S---S----S-------S-----S-------------------------S----
-S----------------SSS--------S------------------------------------S-------------
---------------------------------S--------------------S----S---------------SSSS-
------------------------------SS------S---------------------------------S-------
-------------------------------------------------S----------S--SSSSSSSS----S----
------------------------S--------------------------------------S----S-----------
--------------------------------------------------S------S----------------------
----------------------------S-------------------------S-SSSSSSS-----------------
--------------------------------------------------------------------------------
-------------S--------------------S---------------------------------------------
-------------------------------------S------S-S---------------------------------
----------------------------------------------------------------------S---------
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---------S-----------------------------------------------S----------------------
------S-------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
-----------------------------S--------------------------------------------------
S--S--S-----------------------------S-----------------------------------S-------
----------------------S---------------------------------------------------------
----------------------SS------------------------S-------------------------------
----S---------------------------------------------------------------------------
--------------------------------------------------------------------------------
S------S-S-------------------------S----SS-----------------S--------------------
---------------------------------------------------------SS-S----------SSSSSSSSS
SSSSSSSSSSSSSSSSSS---S-S-S---S--------S-----------S------------S--S--SS-----S---
---------S-----------------------SS---------S--S-------------S---S-------S------
------S-S--------------------------------S--------S-----------------------------
------------S-S---S-SSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S--
------------------S--S------------------------------------S---SSSSSSSSSSSSSSSSSS
S---S----------S------------------------------------------------S-SS------------
------S-----------------------S-----S----------------------SS-------------------
-------S---------SS------------------------SS---------S-------------------------
-----S-----S----------S---------------S-----S-----SS----------------------------
-----------------S---------------------------------------------SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS----------S------------------------S------------S--S----------
--------------------------------------------------------------S-----------------
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>forward_684
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------------------------AGGTACCCCCTTCGATCCAG------------------------------------
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>reverse_2681
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----------------------------------------CTGAGCTCATCGAGGCGTAC--------------------
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>forward_2343
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---TACAGGTGAAGCACAAGGGG---------------------------------------------------------
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>reverse_3598
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-----------------------------------------------------------------------------GCT
TAAGCCCCGTCCATCTT---------------------------------------------------------------
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