>input_sequence_55054
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----------------------------------------ATGAGT---GTGGAACAGGACGTGAAGGTGGTGGAGTCGT
GCATGGTGACTCCCAGCGAGGAGACGCCTAGGAAAGGCTTGTGGATTTCCCCGATCGACCTCACGTGGGCCACCAGGGGC
CACACTCCGACGGTGCACCTGTACCTTCCCGGCTCCGGTCC------CGTCGATGGCTTCTTCGACGTGCCCAGGCTCAA
GGCGGCATTGGCCAAGGCTCTGGTCGCCTTCTACCCCCTGGCCGGCCGTCTCGGCATGGACTCC---AATGGCCGGGCAG
AGATCGATTGCACTGGCGAGGGCGCGCTCTTTGTTGTCGCTCTCTCAGACCTCACCGTCGAAGACTTCAGCAAGTTGAAG
CCGTCGCGGGAGCTAAAGAGGCTCTTCATTCCCCGCGTCGAGGACTACTCGCCGCCCCTCATGTGCGGCCTCCAGGTGAA
CTTCCTCAAGGGCGGCGGAGTGGCCATTGGGATGACGCTGCACCACACCTCCGCCGACGCCATGAGCGCGTTCCACTTCT
TG-CAGACCTGGGCTGCTTTCTCCAGGGACGCG---GCGGCA---GCGGCGGCCCTGGAGCTCCCGTGCCACGAACGCAC
CCTCCTCCGTCCTCGCTCCCCTCCCGTCGTACACCCCGACGCTCTCACCGTGTTCTGCCCGAGGGTAGGCAAATCCG---
AGCCGCCGGGA---GCCGTTGAGAACGTGATTTTCGTCCTCTCCAAAGACCAGGTCGACGCTATCAAGCGTGCTTGCACC
GGCAGAGC------TGACGGTGG------CCGCGTGAGCTCCTTCTGCGCCGTGAGCGCCCACGTGTGGCGGTGCCTGTG
TGTTGCCCGACAACTGCCGGCGGACGCGACGACGCGCCTCACCTTCCCCGCCAACATCCGGCGCAGCCTGAGGCCGCCGC
TCCCGGACACGTACTTTGGAAACGGGATCGTCATGCTGGGCGCCGTCGCCAAGGTGCAGGACATTGTCT---------GC
TCCGACGAGCTGGCCTCTGTTGCTGGTCGGATTAGAGACGTTATCCGCCGGATGGACGACGAGCTGGTGCGTTCGGTGAT
CGACCACTTGGAGATGGCCGGCAGCCAGACATTTATGCCTT---CGGGAAGGA------TGCCGGTGACTGAGCTGAAGG
TGGTCAGCTGGCGAGGCATGCCGGTGTACGACGCGGATTTTGGCTGGGGGAAGCCGGTGGCCATGCACCGCGCCGTGCAA
CCGCATGGCGGGATCATCTGCCTCATAGACGACGA------CGGCGGCAGCATGCGCATCGTCCTGTCTGCCGAGCCTGG
AATTGTCAAGGACTTCGAGCGCCTGCTACATGCCAAGTTTTAA-------------------------------------
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---
>chr3B_1_TraesCS3B01G488100
CTATGAAGACGTGTGCTAGTGTCAGCATCATCAGTAGTATTTCTGTAGCTACAGCGTGATTAGTCTGAAGTGACGTATCT
CACGCTATGGAGCCAGAGCTGTCGGCAAGCACATGGCATATCATGTTGTCAATAGTAGAATATGTCACTGTTCATTGACT
GAGATAGCACATCTTTACTAACTTCAGCAGGCCAATAATTTATGCCTAACACGTCGTCACATGAGGTCCACAACCCTTGA
CCACCAGCTCCTCGCACCATTTCTACGCATGCGAAGGGAGAGATAAAAGAGAGTCATTTTTTTGTTCTAGTCACATTTGT
GAGAGAGAGGACAAATGGCAGCATGAGAGAAGATATTATTCTGGATACAGAGGCTTGGCGAGAAAAGAGAGGAGAGAGAG
AGAAAGAACCGTTGTATTCCATGAGAAAGAGTAGTGGTGAATTTCTTAAGAGGAAAGAGAGGGGCTCTGAGAGAGATGAG
AGAGAAAAAGGTCACGTGCCAACCCCATTTAACAAGAGTGTGAAAAACTTTGTGCCTTTTCCACACACATGTGCATGTGA
TGCATGTCATTAGTAAAATTCACATGAGAAAGAGAGTGGACGTTCAGAGAAAAGAGAGAGGAGAGTGTGGCAAACAGTGA
CACCTGATGTGATGCGTCAGTCAGAGTTGCTGCATGTGAAGCAGTGGAGTTGCGTGTGAGCGAGGCCCATCACTGTGACC
CTAACGCCAGTGTATTAGCATTGATCCAGCTGACACAGCTAAAGCTTTTCAGAATTATGCACATACCCCAATGAATCTAA
GTCTAGCCTGAACGGCCACGATACAAGATACCATGAAGCTCGGCCTAAAAAAACTGCACTCCTAAAGCTTAAAGAAACAA
CGGGAAAAGAATAGTATGGAGCTTCAGCTATAAAATGGGAGGAATCGCGAGAGCAAGAGTACTAAGCCCCCGCTTTCCGT
GTTTCTTCTTCACACTTGACCTGAGCTGAACACCAGGAAAATGAGT---GTGGAACAGGACGTGAAGGTGGTGGAGTCGT
GCATGGTGACTCCCAGCGAGGAGACGCCTAGGAAAGGCTTGTGGATTTCCCCGATCGACCTCACGTGGGCCACCAGGGGC
CACACTCCGACGGTGCACCTGTACCTTCCCGGCTCCGGTCC------CGTCGATGGCTTCTTCGACGTGCCCAGGCTCAA
GGCGGCATTGGCCAAGGCTCTGGTCGCCTTCTACCCCCTGGCCGGCCGTCTCGGCATGGACTCC---AATGGCCGGGCAG
AGATCGATTGCACTGGCGAGGGCGCGCTCTTTGTTGTCGCTCTCTCAGACCTCACCGTCGAAGACTTCAGCAAGTTGAAG
CCGTCGCGGGAGCTAAAGAGGCTCTTCATTCCCCGCGTCGAGGACTACTCGCCGCCCCTCATGTGCGGCCTCCAGGTGAA
CTTCCTCAAGGGCGGCGGAGTGGCCATTGGGATGACGCTGCACCACACCTCCGCCGACGCCATGAGCGCGTTCCACTTCT
TG-CAGACCTGGGCTGCTTTCTCCAGGGACGCG---GCGGCA---GCGGCGGCCCTGGAGCTCCCGTGCCACGAACGCAC
CCTCCTCCGTCCTCGCTCCCCTCCCGTCGTACACCCCGACGCTCTCACCGTGTTCTGCCCGAGGGTAGGCAAATCCG---
AGCCGCCGGGA---GCCGTTGAGAACGTGATTTTCGTCCTCTCCAAAGACCAGGTCGACGCTATCAAGCGTGCTTGCACC
GGCAGAGC------TGACGGTGG------CCGCGTGAGCTCCTTCTGCGCCGTGAGCGCCCACGTGTGGCGGTGCCTGTG
TGTTGCCCGACAACTGCCGGCGGACGCGACGACGCGCCTCACCTTCCCCGCCAACATCCGGCGCAGCCTGAGGCCGCCGC
TCCCGGACACGTACTTTGGAAACGGGATCGTCATGCTGGGCGCCGTCGCCAAGGTGCAGGACATTGTCT---------GC
TCCGACGAGCTGGCCTCTGTTGCTGGTCGGATTAGAGACGTTATCCGCCGGATGGACGACGAGCTGGTGCGTTCGGTGAT
CGACCACTTGGAGATGGCCGGCAGCCAGACATTTATGCCTT---CGGGAAGGA------TGCCGGTGACTGAGCTGAAGG
TGGTCAGCTGGCGAGGCATGCCGGTGTACGACGCGGATTTTGGCTGGGGGAAGCCGGTGGCCATGCACCGCGCCGTGCAA
CCGCATGGCGGGATCATCTGCCTCATAGACGACGA------CGGCGGCAGCATGCGCATCGTCCTGTCTGCCGAGCCTGG
AATTGTCAAGGACTTCGAGCGCCTGCTACATGCCAAGTTTTAATCATCTATCTTCCCACTTTGTGTGGCGTTTCACTTGT
CATCTTCCGATTTGTTTGTTTCCCGGCATTTGCTGTATTTATTTCTAAATTGGGCCTTGGAATTCAATGGTTCTATCTGT
TTGCTTGAACTTGACTTGTCTTTCGGCTGCATGCAATTGCAGTGCATCTATATGGAATAAAGGTGTGACAGATATATTTT
GTGAAACCAGTATTCGGTTAATTCAATTCTTTTATCATACAGCCATATGGTCCTTTCTCTCTCACATGCCACCATGTCAC
ATAGGCGGTATGACATCACCAAAAGTGTTATTTTATATATTTTAATTTTAAAATATGTCAACATGGGATCTTGTTTCGAT
AAATATTTTCCATCCTCGAAACTAGATCCAATGTTGGCATGTTTCGACAAAAAAAGTCGTTGATACATGGGAGATTATTG
TCACTTACTTGCCATGTAATTACTTCCTTAATAGATTGATTAGCATAGTTGCCAGATGGCTGAACGTGGACATACTCCAC
TAAATGACTTGCGTCATGGTGGTTGTGTGGAGTGATACCACTCACTCGTTATGCATAGCATTGCAATGTGTAAACACATG
CAAAACAATTGCCATGTAAGTATATACCATCATTGTGGCCACTATACACTGTTATGCTCACAACTATGGCTGCGTAATCT
ACCAAATGGCGTCGACAAAAAATGTTCATCCCAACATGCAAACATGTGGTCTTATTCGAAGCCCTCATTGAGACTAACCC
ACCCGTGAAAAAGGATCACTAATCAGATTAACAATTTACGAGATAACTAATTGAAAAAATTCAAAGAAGTGATGATGTCA
GCGTAATGGCAGAGCATGTAAGCACACTATGCAACATAAAGTTTTGCAATTTGGTAATGTATCAATTCCAGTGATTTAGT
TACCAATTGATTTACCTCGGTAATTATCGATAGCAAGATATACCTACGGTAAATCAGTCTACAAGAAAGTTTGAATTTGA
GTT
>chr3B_963
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--TTCCTCTTCTCACTCGACCCGGGCGCATA---AGGAAAATGGAT---GTACACCGGGAGGTGGAGGTGGTGGAGTCGT
GCATGGTGACGCCCAGCAAGGACACGCCTAGCCATGGCCTCTGGCTCTCACCACTCGACCTCAACATGGTCAATAGAGGC
CACACCCCTACCGTCTACTTCTACA------GCTCCAGCTCCGGCGTCGTCGACGACTTCTTCGACGTGACCAGGCTGAA
GGTGGCGTTGGCCAAGGCTCTCGTGGCCTTCTACCCTCTCGCCGGCCGCCTCAGCGTGGACGGC---GACGGTCGGGCGG
AGATCAACTGCGCCGGCCAGGGCGTGCTCTTCGTCGTCGCACGCTCGGACCTCACCGTCAACAGCTTCGTCGACTTCCAG
CCGTCTCCCGAGCTGAGGAGGCTCTTTGTCCCCCGCGTCGAGGACC---CGCCGTCCATCATGTGCGCCATTCAGGTGAC
CTTCATGAGATGCGGCGGGGTGACCATGGGGACGGCGCTGCACCACACCGCCATCGACGCTGTAAGCGCAGCCCACTTCT
TC-CAGACGTGGTCCGCCTTCTCCAGAGACGGTGATGGAGCCAGCGGGGTGGCGTTCGAGCTCCCGTGCCACGACCGCAC
CCTCCTCCGCGCGCGCTCACCGCCCGTCGTCCACCCCGACGCTCTCACCGTGCTATGCCCGAAGCTAAGCCAATCCG---
AGCGGTCGGCC---CCCGCGGTCAACGAGATCTTCCTCGTCTCGAGCGACCAGGTGGCCGCTCTGAAGCGCGCCTGCGCC
GGCAGCGGCGATGGTGGCGGTGG------CCGCGTGAGCACGTTCTGCGCGGTGGGCGCCCACGTGTGGCGGTCCATGTG
CGCCGCCCGCCGGCTGCCGCCGGACGCCACGACTCGGCTCACCTTCCCGGCAAATATCCGGCGCGCCCTGAGGCCGCCTC
TGCCGGCGCGCTACTTCGGGAACGGGACCATCAGCCTGGGCACCGCCGGCAAGGTGCGTGACA---TCG---------GG
TCGGAAGAGCTGGGCTCCGTCGCCGCGCGGATCAGTGGCGCCGTCCGCCGGATGGACGACGAGCTGGTGCGTTCCGCGAT
TGACTACCTGGAGATGAACGGCGGCCGGCA------------GCCGGGCCGTGGCGCCCTGCCGGAGACAGAGCTGAGGG
TGGTGAGCTGGCTGGGCATGCCGATGTACGACGCGGATTTCGGGTGGGGGAAGCCGCTCGCGATGCACCGCGCGGTGCAG
CAGCGTGGCGGGAGCGTCTGCCTCATGGACGGCCCCA------GCGGCGGCGTGCGCATCCTCGTGTCTGCAGAGGCTGC
TGTTCTCGTCGACTTCCGGCGCCTGTTGTATGCCA---------------------------------------------
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---
>chr5B_995
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----------------------------------AGGAAAAGTGATGCCGTGGTGCAGGAGGTGAAGGTGGTGGAGTCGT
GCATGGTGGCACCAAGCGCGCAGACGCCTAGGCACGGCCTGTGGCTCTCCCCGCTCGACCTCATGCTGGTCAACAGAGGC
CACACCCCCACCGTCTACTTCTACC------------GCTCCGAGTCCGGCGGCGACTTCTTCGACGTGGCCAGGCTCAA
GGCGGCGATGGCCAAGGCTCTGGTGGCCTTCTACCCCCTGGCCGGCCGTCTCGGCGTGGGCGGCCGTGACGGCAGGGCGG
TGATCGACTGCGCCGGTCAGGGCGCGCTCTTCGTCGCCGCGCGCTCCGAACTGGCCGTCGACGACTTCAGCGGCTTCAAG
CCGTCGCCGGAGCTAAGGAGGCTCTTTGTTCCCCGCGTCGAGGATTACTCGCCTCCCGTCATGTGCGCCGTCCAGGTCAC
CTTCTTGAAGTGCGGCGGGGTGGCACTAGGGACCGCGCTGCACCACGTCGCCGCCGACGCCATCAGCGCCTTCCACTTCT
TC-GAGACGTGGTCCGCCTTCTCACGGGACGGCGACGCGGCGGCGGCGGCGGCCCTAGAGCCCCCGTTCCACGACCGCAC
CCTCCTCCGCGCGCGCTCCCCGCCCTTCGTCCACCCGGACGCGCTCACCGTCTTCTGCCCCAAGCTGAACCTCTCCACCG
AGCCGTCGGCGAGGCCCGTCGTCAGCGAGGCTTTCGACATCTCCAAGGACCAGGTCGCCGCTCTCAAGAGTGCGTGCGTC
AGCGGCG---------AGGGCGG------GCGCGTGAGCACGTTCTGCGCCGTGAGCGCCCACGTGTGGCGGTGCGTGTG
CGTGGCCCGCCGGCTGCCGCCGGACGCCACGACCCGCCTCACCTTCCCGGCCAGCGTCCGGCGCAGCCTGAGGCCGCCGC
TCCCGGCCGGCTACTTCGGCAACGGGGTCATCTGGCTGGGCGCCGCCGGCCAGGTCCGGGACG---TCGCCTCCTCGGGC
TCGGAGGGCCTGCCCTCCGTGGCCGACCGAATCAGGGGCGCCGTCCGCCGGATGGACGACGAGCTGGTGCGCTCGGCGGT
CGACTACTTCGAGCTGACCACGGAGGCGGACAGCAAGCCAGCGCCGGGCCGCA------TGGCGGAGACGGAGCTGAGGG
TGATCAGCTGGCTGGGCATGCCGGTGTACGACGCGGACTTCGGGTGGGGGAAGCCGCTGGCGATGCTGCGCGCCGAGGCG
GAGCGCGCCGGGTTCGTCTACCTGATGGACGGCGGGCAGGGCGCCGGCAGCGTGCGCGTCGTCATCTGTACGGAGGCCGC
GATCCTGGACGACTTCCAGCGCCTGCTATATGCCAAGTTCTA--------------------------------------
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---
>chr3A_997
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------------------------------------GAAAATGAGT---GTGGAC---GAGGTGGAGGTGGTGGAGTTGT
GCATGGTGGCACCCTGCCAGGAGACGCCTAGGAGAGGCATGTGGCTCTCCCCGCTCGACCTCTTGCTGCTCAACAGAGGC
CACACCCCCGCCGTCTACTTCTACCCGTACCGCTCCTTGCC---------CGGTGACTTCTTCGACGTGGCCAGGCTCAA
GGCAGCGATGGCCAAGGCACTCGTGGCTTTCTACCCCCTGGCCGGCCGTCTCGGCATGGACGGC---AACGGCCGGGCAG
AGATCGACTGCACCGGCCAGGGCGCGCTCTTCGTCGTCGCTCGCTCGGACCTCACCATCGACGACTTCCGCAGCTTCTTG
CCGTCGCCCGAGCTGAGGACGCTGTTTGTTCCCCGCGTCGAAGACCACTCGCCGTCCGTCTTGTGCGCTGTCCAGGTGAC
CTTCTTGAAGTGCGGCGGGGTGGCATTAGGGACGGCGCTGCACCACGTCGCCGTCGACGCCATCAGCGCGTTCCACTTCT
TG-CAGACGTGGTCTGCCTTCTCCAAGGGCGGCG---------GCGCGGCGGCGCTAGAGCTCCCGTTCCACGACCGCAC
CCTCCTCCGCGCGCGCTCCCCACCCTTTGTCCACCCCGACGCCTTCTCGGTCTTCAGCCCCCAGCTGAAATTATCCGTCG
AGCCGTCGGAG---ACCGTCGTCACCCAGGCTTTCGTCGTCTCCAAGGACCAGGTCACCGCTCTCAAGCGTGCCTGCGTC
GGCGGCG---------ACGGCGG------CCGCGTGAGCACGTTCTGTGCCCTGAGTGCCCACGTGTGGCGGTGCGTCTG
CGTCGCCCGCCGGCTGCCACCGGACGCTACCACCCGCCTGACCTTCCCGGCCAGCGTCCGGCGCAGCATAAGGCCACCAC
TCCCGCCTGGCTACTGCGGCAACGGGATCATCTGGCTTGGCGCGGCTGGCAAGGTGCGAGACG---TCGCCTCCTCGGAG
TCGGAGAACCTGGTGTTCGTGGCCGGCCAGATCAACAGCGCCGTCCGTCGGATGGACGACGAGCTAGTGCGCTCGGCGAT
AGACTACTTCGAGCTCACCGAGATCA---ACAGCAAGCCGGCGCCGGGGCGCA------TGCCAGAGACGGAGCTGCGGG
TGATCAGTTGGCTTGGCATGCCGGTGTACGACGTGGACTTCGGGTGGGGGAAGCCGCTGGCAATGC--------------
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---
>chr7D_997
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------------------------------------GAAAATGGGT---GTGGAC---GACGTGGAGGTGGTGGAGTCGT
GCATGGTGGCACCCTGCCAGGAGACGCCCAGGAGAGGCATGTGGCTCTCCCCGCTCGACCTCATGCTGGTCAACAGAGGC
CACACCCCCACCGTCTACTTCTACCCGTACCGCTCCGACCC---------CGGTGATTTCTTCGACGTGGCCAGGCTCAA
GGCGGCGATGGCCATGGCGCTCGTGGCTTTCTACCCCCTGGCCGGCCGTCTCGGCATGGACGGC---AACGGCCGGGCAG
AGGTCGACTGCACCGGCCAAGGCGCGCTCTTCATCGTCGCTCGCTCGGACCTCACCATCGACGACTTCCGCAGCTTCTTG
CCGTCGCCGGAGCTGAGGACGCTCTTTGTTCCCCGCGTCGAAGACCACTCGCCGTCCGTCTTGTGCGCTGTCCAGCTGAC
CTTCTTGAAGTGCGGCGGGGTGGCATTAGGGACGGCGCTGCACCACGTCGCCGTCGACGCCATCAGCGCGTTCCACTTCT
TG-CAGACGTGGTCTGCCTTCTCCAGGGACGGCG---------GCGCCGCGGCGCTAGAGCTCCCGTTCCACGACCGCAA
CCTCCTCCGCGCGCGCTCCCCACCCTTCGTCCACCCCGACGCCTTCTCGGTCTTCTGCCCCAAACTGAACCTATCCGTCG
AGCCGTCGGAG---AC------------------CGTCGTCTCCAAGGACCAGGTCACCGCTCTCAAGCGTGCCTGCGTC
GGTGGCG---------ACGGCGG------CCGCGTGAGCACGTTCTGCGCCCTGAGTGCCCACGTGTGGCGGTGCGTCTG
CGTCGCCCGCCGGCTGCCACCGGACGCCGCCACCCGCCTCACCTTCCCGGCCAGCGTCCGGCGCAGCATGAGGCCACCGC
TCCCGCCTGGCTACTGCGGCAACGGGATCATCTGGCTTGGCGCGGCTGGCAAGGTGCGAGACG---TCTCCTCCTCGGAG
------GACCTGGTGTTCGTGGCCGGCCAGATCAGCAGCGCCGTCCGTCGGATGGACGACGAGCTAGTGCGCTCGG----
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---
>chr5D_1013
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-------------------------------------------------------CAGGAGGTGAAGGTGGTGGAGTCGT
GCATGGTGGCACCCAGCGAGCAGACGCCTAGGCACGGCCTCTGGCTCTCCCCGCTCGACCTCATGCTCGTCAACAGAGGC
CACACCCCCACCGTCTACTTCTACC------GCTCCGAGTC---------CGGCGACTTCTTTGACGTGGCGAGGCTCAA
GGCGGCGATGGCCAAGGCTCTGGTGGCCTTCTACCCCCTGGCCGGCCGTCTCGGCGTCGGCAGCCGTGACGGCAGGTTGG
TCATAGACTGCGCCGGTCAGGGCGTGCTCTTTGTCGTCGCGCGCTCGGACCTCGCCGTCGACGACTTCAGCACCTTCAAG
CCGTCGCCGGAGCTAAGGAGGCTCTTTGTTCCCCGCGTCGACGATTACTCGCCTCCCGTCATGTGCGCCGTCCAGGTCAG
CTTCTTGAAGTGCGGCGGGGTGGCACTAGGGACCGCGCTGCACCACGTCGCCGCCGACGCCATCAGCGCCTTCCACTTCT
TC-CAGACTTGGTCCGCCTTCTCCCGGGACGATGACGCGGCA---GTGGCGGCGCTAGAGCCCCAGTTCCACGACCGCAC
CCTCCTCCGCGCGCGCTCCCCGCCCTTCGTCCACCCGGACGCGCTCACCGTCTTCTGCCCCAAGCTGAACCTCTCCACCG
AGCCGTCGGCGGGGCCCGTCGTCAGCGAGGCTTTCGACATCTCCAAGGACCAGGTCGCCGCTCTCAAGAGTGCGTGCATC
AGCGGCG---------ACGGTGG------GCGCGTCAGCACGTTCTGCGCCGTGAGCGCCCACGTGTGGCGGTGCGTGTG
CGTCGCGCGCAGGCTGCCGCCGGAAGCCACGACCCGCCTCACCTTCCCGGCCAGCGTCCGGCGCAGCCTGAGGCCGCCGC
TCCCTGCAGGCTACTTCGGCAACGGGATCATCTGGCTGGGCGCCGCGGGCCAGGTCCGGGACG---TCGCCTCCTCGGAT
------GGCCTCGCCTCCACGGCCAGCCGCATCAGGGGCGCCGTCCGCCGGATGGACGACGAGCTGGTGCGCTCGGCGAT
CGACTACTTCGAGCTGACCGCGGAGGCGGACAGCAAGCCAGCGCCGGGCCGCA------TGGCGGAGACGGAGCTGAGGG
TAATCAGCTGGCTGGGCATGCCGGTGTACGACGCGGACTTCGGGTGGGGGAAGCCGCTGGCGATGCTGCGCGCCGAGGCA
GAGCGCGCCGGGTTCGTCTACCTGATGGACGGCGGGCAGGGCGCCGGCAGCGTGCACGTCGTCATCTGTACGGAGGCCGC
GATCCTCAGCGACTTCCAACGCCTGCTATATGCCAAGTTCTA--------------------------------------
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---
>chr3D_1014
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--------------------------------------------------------AGGAGGTGGAGGTGGTGGAGTCGT
GCATGGTGCCGCCCAGCGAGCAGACACCTAGCCATGGCCTCTGGCTCTCCCCACTCGACCTCACAATGGCCAATACAGGC
CACACCCCAACCGTCTACTTCTACA------GCTCCAGCTCCAGCGTCGTCGACGACGTCTTCGACGTGACCCGGCTGAA
GGTTGCATGGGCCAAGGCTCTCGTGGCCTTCCACCCTCTAGCCGGCCGTGTCAGCGTGGACGGC---GACGGTCGGGCAG
AGATCGACTGCGCCGGCCAGGGCGCGCTCTTCGTCGTCGCTCGCTCGGACCTCGCCGTCAAGGGCTTCGTCCACTTCAAG
CTGTCGCCGGAACTAAGGAGGCTCTTTGTTCCCCGCGTTGAGG---ACTCGCCGTCCATCATGTGCGCCTTCATGG----
--------GATGCGGTGGGGTGGCTCTGGGGACGGCTCTTCACCACGCCGCCATCGACGCTGTAAGCGCGGTCCACTTCT
TTACAGACGTGGTCCGCCTTCTCCAGAGACGGTGATAGAGCCGGGGGGCCGGCGCTCGAGCTCCCGTGCCACGACCACAC
CCTCCTCCGCGTGCGCACACCACCTGTCGTCCGCCCCGACGCTCTCACCGTGTTCTGGCCCAAGCTAAGCCTATCCG---
AGCCGTCCGTC---CCCGTCGCCAGCGAGATCTTCGTCTTCTCCGAGGGCCATGTCGCAGCTCTGAAGCGTGCCTGCAGC
GGCGGT---------------GG------CAGCGTGAGCACGTTCAGCGCCGTGAGCGCCCACGTGTGGCGGTCCCTATG
CGCCGCGAGCCGGCTGCCGCCGGACGCGACGACGCGCCTCAGCTTCCCGGCCAACGTCCGGCCGGTCCTGAGGCCGCCGC
TGCCGGGGCGCTACTTTGGGAACGGGATCATCAACATGGGCACCGCCGGCAAGGTGCGCGACA---TCGG---ATCGGGG
------GAGCTGGCATCCGTTGCCGGTCGGATCGAAGGCGCCGTCCGCCGGATGGACGACGAGCTGGTGCGTTCGGTGAT
TGATTACTTGGAGATGAACGGCGAGCAGCA------------GCCGGGCCGTGGCAGCCTACCGGAGACCGAGCTTAGGG
TGGTCAGCTGGCTGGGAATGCCGGCTC---ACGCGGATTTCGGCTGGG--------------------------------
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---
>chr3D_1562
--------------------------------------------------------------------------------
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------------------------------------------------------------CTACCATGCCATGACCGCAC
CCTCCTCCGCGCGCGCTCCCCGCCCGTCGTGCACCCCGACGCCCTCACCGTGTTCTGCCCGACGCTAAGCCCATCCG---
AGTCGTCGGCA---GCCCTGGTCAACGAGATCTTCGTCCTCTCCAAGGACCAGGTGGCCGCTCTCAAGCGCGCCTGCGCC
GGCGGC---------------GGAGTCGGGCGCGTGAGCACCTTCTGCGCCCTGAGCGCCCACGTGTGGCGGTGCCTGTG
CGTGGCCCGCCGGCTGCCTCCGGACGCCACGACGCGCCTCACCTTCACGGCGAACGTCCGGCGCAGCCTGAGGCCGCCGC
TCCCCGACAGGTACTTCGGCAACGGGATCATCATGGTGGGCACCGCGGGCAAAGTGGGGGAGA---TCCG---CTCGGAG
------GAGCTGGCCTCCGTCGCCGGCCGGATCAGCGGCACCGTCCGCCGGGTAGACGACGAGGTGGTGCGCTCGGTGAT
CGACTACGTGGAGATGGTCGGCCGGC---CAGTGATGCATG---CGGGAAGCA------TGCCGGAGACGGAGCTGATGG
TGGTCAGCTGGCTGGGCATGCCTATGTACGAGGCGGGCTTCAGGTGGGGGAAGCCGCGGGCGATGCAGCTCGCCGCGCA-
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---
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS---S-----S----S----S-S--SS-SSSSS--------------------S-------------------------
----------S---------------------------S-----S-S------S-----------SS-----S---S---
-----S--S--S--SS--S-S----SSSS-S-------S----------------S-------------S----------
------------------------S------------------------------------SS------S----------
-------S-----S---S----------------S-------S---S--------------S-----------S--S---
-------S--------S---------SS-----------------------------S---------S-S---------S
----S-S---S-------S--------S----S-S--------------S-------------S----------------
--------S---S----S-------------SS-----------------------S-----------------S-----
---------SS-S--------S--------S-------------------------------S-S--S--S---------
-----S---S---------S-SS----S------------------S----------S----S----------S------
-----S-S-------------------------------S----------------------------------------
S--S-----S-SS------S----------------------------S-------------------------------
---------S---------S---------S---------------S--S--------S-----SSS--------------
--S--S-----------S-----S--------S----S--SSS-------------------------------------
----S-----------------------S--S-S------S----------S-------------S---S-------S--
------------SS--------------------------S---------------S----S------------------
-S--S----------S----------S----S--S----------------S-----------S-------S---S---S
S---S----S------S-----------S----------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS
>forward_98
------------------------------------------------------------------------------CT
CACGCTATGGAGCCAGAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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---
>reverse_1428
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GCCTCCAGGTGAA
CTTCCTC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>forward_228
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ACACGTCGTCACATGAGGTC------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>reverse_1978
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------AGGACATTGTCTGCTCCGAC---
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---
>forward_1447
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GCCTCCAGGTGAA
CTTCCTC-------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---
>reverse_2416
--------------------------------------------------------------------------------
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---------------TTGTTTCCCGGCATTTGCTG---------------------------------------------
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--------------------------------------------------------------------------------
---
