>input_sequence_55051
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-------------------------------------------------------------------TGAGCTTTTGAAC
TATTTCAGGTGCTTTAACCTAGCGCCGCAACGCATCACAGATCACACAACAAAATA---ACTTAA-TCAGATGTAGAAGT
TCAATACAATACAAGATTAGAATTGAAAGAGATTAGTAGGTGGTGTGATGTGTTAACCTCGGCAAGTTCGTTGGC--TAG
CATGAAG--AATTGGTGGGTGAAGCAGCCTGCATTGCCGTATGAATCAGATTATATATTTTTTTTTTTGAGGG-GATGAA
TCAGAT----TGGATGGAAGAGCAGAGATAGGCAGGCGGCGAAGGCGTAGGACGGCAGCGGCTCAGCGGT----------
------------------------------AAGAGATTTAGCG-----------GAGGCCCATCGTACAATCTA------
-----CCTTGGCATGGACTTAGAAA-CGACTAACTAGTGGGCTTGTACATGGGCCTTTTTCCTTTCTCCAATATTCACGT
AACGATCGATAGGGGGGGCCAAGAACGTTGTACCTGCAAATCTTATCGCTAATTAATTGCTGATACGAGATGTCCGC-CG
ATCGTTAGGGGGGGCCTGGCCCCTGCTCGCCCCCCCTTGGCTCCGCCACTGGCGTTCTCCCGCGTCCGGATCAACCCCGC
CTGCGTCGCCAAGCCCACCGAC---GCCGCCAAGAAGCCGAAGCGGCCTGCAGGATCGCTCGACCACGGGGAACCTCCGG
CGAAGAGCGTGCGTTGTGCTTCCGGCGAGGTCGCGTCCGCTGCCGCTGCCGCCGCCAGGAACAAGAAGCGCCCGGGTCCC
AGTCCAGTCAGCGGC------GTCGAAGCCCT------------------------------CCGCGTGACCAAGAACCA
GACCAGCGCCTCGCCGACTCAGCCTCCCGAGCTCACGGCGCCACCCAAGCCACCAGCTTCCAGCGTACGCGA--------
-GAATGCTCGCCTTGCCGAGAACCAGACCAGCGCCTCGTCGCTGAGGCCCCTGGCCTCCTGCAGCATGCGCGAGCTCCTC
GAGAAGGCCCGTCTCGCCAAGGCTCGTAT------TGCCGCTGAGGATGCCGAGGCCGAGGCCGAGGCCATCCACAGGCG
CGAGATCGAGCGGCGGAGGGCTGAGGCCCGCCGGGAGCGGGAGCAGATGGTTCCGACGGTGGAGTTCAACGACCCTTTCA
TTGATTTCCGGGACGTGTTCAAGTGAGGCCATGGATCCA-CTCGGAGCAGAGGATCGATCCAAGAAGTG----AAGTTAG
GCATGATCAATTAGTCTGACCATACTGTCCATACAGGTGTGGGTGATTACAGGGTCGGTTAGCCCTAATCTACTGAATCG
CTGGCAGTTT--TTTT-GTTAGTGCGAGTGCGATTCCCCCTTCTGATTATGCAA--AGTGATTTAATACA----------
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>chr3A_1_TraesCS3A01G397200
AACGGAGCTACCTAAACAAACAGCTATTAACGCAATCCGTTACCGTCGTTAACAGGTTGCGTTACAATTTGCCAAACCAA
ACACCTCCTGAGAGTTTACACGATCTACGAATATATCGCAGCTAAGCCAAGCCGTACCGGAACTTACCAGGTCCAGGCCC
GGCTCACCGACAACTGGGCCCACCGCTACAACGTAAACCCTTTTCATTTCGAACTCGGACTTGAATCCTCTCGCGGCGCG
TCTTCTTGCGGCTACTTCCGCCCTAAACTTGACCCCCGCGCTATCTCTTTCTTGCTCCTCCCGGTCTCCCGATCGATCGG
TTCCCCTCCATGATCTCGTCTCGTGCGCCCCGATCTGCTCCGGCCATGGGCGCCACCGCCCACCCCCGCTCCCTGGCCTC
GGGCGGACCCGCCGCTTCCCTCCCCGGAGCTTGCGCGTTCTCCAGCGGCGGAGCCAGGATTTAGGCATAGGGGGGGC---
CAGACGGCA-TGAAGCCAGTAAATATTATGCCTCACATACTACCTAATAATTTATATTCACGTATCATTCTCATTTAACT
TTGCCTGGGAACATAAG-TT--T---TTTTGGCTGCCGGAGCATGTGTAGCAAATAGCTAATATTAGTCAATAATTCCAC
TTAAACGCCAAGAAGACAAATTTGATTATCAAACTACTCTGAAATACGACATGGGATGCCGTGCTATTAAACATTGTCAT
ATGGGAATTTAAGATATACGGACAAGAATAATCATGTATTATCACTTGGTTCGCTTTTAACTTGCATTTACATAGGTTTG
AATGAGAAATCATCACTGGTTGTATTAGAAAAAAA-TATTATTTAGTTAGCAAAAACAGATCAACGTTGCTAGAACACAT
ACCTGGAAAACCAAATCCACCCCTCCTTATCCCCT--------TTGCC--------GCTAGGTTCAAGTACATCAGATAG
TCGTCGTTGGCAGGCATATGCGACAACCATAACTGTATATGAGTGCTCAACCAAACATTGACGAGTCTGAGCTTTTGAAC
TATTTCAGGTGCTTTAACCTAGCGCCGCAACGCATCACAGATCACACAACAAAATA---ACTTAA-TCAGATGTAGAAGT
TCAATACAATACAAGATTAGAATTGAAAGAGATTAGTAGGTGGTGTGATGTGTTAACCTCGGCAAGTTCGTTGGC--TAG
CATGAAG--AATTGGTGGGTGAAGCAGCCTGCATTGCCGTATGAATCAGATTATATATTTTTTTTTTTGAGGG-GATGAA
TCAGAT----TGGATGGAAGAGCAGAGATAGGCAGGCGGCGAAGGCGTAGGACGGCAGCGGCTCAGCGGT----------
------------------------------AAGAGATTTAGCG-----------GAGGCCCATCGTACAATCTA------
-----CCTTGGCATGGACTTAGAAA-CGACTAACTAGTGGGCTTGTACATGGGCCTTTTTCCTTTCTCCAATATTCACGT
AACGATCGATAGGGGGGGCCAAGAACGTTGTACCTGCAAATCTTATCGCTAATTAATTGCTGATACGAGATGTCCGC-CG
ATCGTTAGGGGGGGCCTGGCCCCTGCTCGCCCCCCCTTGGCTCCGCCACTGGCGTTCTCCCGCGTCCGGATCAACCCCGC
CTGCGTCGCCAAGCCCACCGAC---GCCGCCAAGAAGCCGAAGCGGCCTGCAGGATCGCTCGACCACGGGGAACCTCCGG
CGAAGAGCGTGCGTTGTGCTTCCGGCGAGGTCGCGTCCGCTGCCGCTGCCGCCGCCAGGAACAAGAAGCGCCCGGGTCCC
AGTCCAGTCAGCGGC------GTCGAAGCCCT------------------------------CCGCGTGACCAAGAACCA
GACCAGCGCCTCGCCGACTCAGCCTCCCGAGCTCACGGCGCCACCCAAGCCACCAGCTTCCAGCGTACGCGA--------
-GAATGCTCGCCTTGCCGAGAACCAGACCAGCGCCTCGTCGCTGAGGCCCCTGGCCTCCTGCAGCATGCGCGAGCTCCTC
GAGAAGGCCCGTCTCGCCAAGGCTCGTAT------TGCCGCTGAGGATGCCGAGGCCGAGGCCGAGGCCATCCACAGGCG
CGAGATCGAGCGGCGGAGGGCTGAGGCCCGCCGGGAGCGGGAGCAGATGGTTCCGACGGTGGAGTTCAACGACCCTTTCA
TTGATTTCCGGGACGTGTTCAAGTGAGGCCATGGATCCA-CTCGGAGCAGAGGATCGATCCAAGAAGTG----AAGTTAG
GCATGATCAATTAGTCTGACCATACTGTCCATACAGGTGTGGGTGATTACAGGGTCGGTTAGCCCTAATCTACTGAATCG
CTGGCAGTTT--TTTT-GTTAGTGCGAGTGCGATTCCCCCTTCTGATTATGCAA--AGTGATTTAATACAGCAGTTATTA
ATCACTTGATTACTGGTAAACATCATTAGATGTACGATATCAAAAGATTCTTGTCTAATTTACAGATACATTTGATCGAT
GATGTCCTTTTCGTTCTTGCGGGGTGTCTTCAGTCCACGTTTCCGCGGCTACAACAGTCAACAGTAGTCAATTGAAGGAC
ACGACGGCGCAGCGAGTTTTCTTACTGAACAGAGTGGATTTTATTTTGGAGGC-AGGTAAATTTCCAGCATGATCGGTTT
TGCTGATTTTATGAGTGAACTGCAATTCTTCTAAAACAACAATCTAACGAACACTGGTCGCCTAACA-------------
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-------------------------------------ATATAAAAACGCCTAACTACGGTGCATTTGCTCGAGATAGCAG
TTATATTTTCCTTCTTTTCTGAAAATATGACAGAAGTGCCTAAATTCCATTACTTAAGAGGGAATTTAATATGCACACAA
ATAACAATCAAACACTATGAGCCTTGTATGATTTAGGGTTGTTTGCTGTCATTGGGTGTGCGTCAACCCCATTGGCCGCC
ACCTCTTAGTCCTATGTAGATAGATCAACCTTATAGTGTTTGCTTTG---------------------------------
-----GATTTTATTTAGCCAAAAAGTTAGTCGTTGTTGCACCTTTGTGTACTCCGTTTAAGATAATCAACATTTCATCTA
TACTCGCAATATCCAGATTGCTTCTACCATATTCTTGATCGTTTTTTTATTGCTTCCAGGTAGACCTTCTTGGTCAGGCT
AACCACGCATCTGGCACCGGCATTGACGGTAACATTCATGAGATTGGCG-------------------------------
---------------TCAAAGTTGTTCTCCATCCAAATCGACAAAATCTTTCTCATTGAAAGATTGGGACATCCTTGCCC
CTATCAATGG----CCCTAAAAAGTGTGGATTTATGCTCCGGGACACCTCAAGGAAAACCACTTAGTGATTGAGCTCATG
CTTCGTTGGCTGAGGCTAAAAAAATGGCCGAGACTTTGAGGTTGTGAGGTGCTTTGGTTTGTTAACAATCGTATATTGCT
GTGTTAGTT
>chr3D_151
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTCCAGGCCT
GGCTCACCGACAACTGGGCCCACCGCTACAACGTAAACCCTCTTCATTTCGAACTCGGACTTGAATCCTCTC-CGGCGCG
TCTTCTTGCGGCTACTTCCGCCCTAAACTTGACCCCCGCGCTATCTCTTTCTTGCTCCTCCCGGTCTCCCGATCGATCGG
TTCCCCTCCATGATCTCGTCTCGTGCGCCCCGATCTGCTCCGGCCATGGACGCCACCGCCCACCCCCGCTCCCTGGCCTC
GGGCGGACCCGCCGCTGCCCTCCCCGGAGCCTGC----------------------------------------------
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---------------------------------------------------GCGTCCTCCCGCGTCCGGATCAACCCCGC
CTGCGTCGCCAAGCCCACCGCC---GCTGCCAAGAAGCCGAAGCGGCCTGCAGGATCGCTCGACCACGGGGATCGGCCGG
CGAAGAGCGTGCGTGGAGCTTCCGGCGAGGTCGCGTCCGCTGCCGCTGCCGCAGCCAGGAACAAGAATCGCCCGGGTCCC
AGTCCAGTCAGCGGCGTCGAAGTCGAACCCCT------------------------------CCGCGTGACAAAGAACCA
GACCAGCGCCTCGCCGACTCAGCCTCCCGAGATCACGGCGCCACCCAAGCCGCCAGCTTCCAGCATGCGCGAGCTCCTCG
GGAAGGCTCGCCTTGCCGAGAACCAGAGCAGCACCTCGTCGCCGAGGCCCCTAGCCTCCTGCAGCATGCGCGAGCTCCTC
GAGAAAGCCCGTCTCGCCAAGGCTCGTAT------TGCCGCTGTT------GATGCCGAGGCCGAGGCCATCCACCGGCG
CGAGATGGAGCGACGGAGGGCTGAGGCCCGCCGGGAGCGGGAGCAGATGGTTCAGACGGTGGAGTTCAACGACCCTTTCA
TTGATTTCTGGGACGTGTTCAAGTGAGGCCATGGATCCATCTCGGTGCAGAGGATCGATTCGGTCGAAGAAGTAAGTTAA
GCTTGATTAATTAGTCTGA---------CCATACAGGTGTGGGTGATTACAGGCTCGGTTAGCCCTAATCTACTGAATCG
CTGGCAGTTT--TTTTTGTTAGTGCGAGTGCAATTCCCCCTTCTGATTATGCAATTAGTGATTTAATACAGCAGTTATTA
TTCACTCGATTAAACATCATGGGTGTCTCATATCAA----CAGAGGAGACTTGTCTAATTTACAGATACATTTGATCGAT
G-------------------------------------------------------------------------------
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>chr3A_331
TGGTCTCT------------------------------------------------------------------------
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------------------TCTCGCGCGTCCCGATCTGCTCCGGCCATGGGCGCCACCGTCTTCCCCCACTCCCTGGCCTC
GCGCGGACCCGCTGCAGCCCTCCCCCGAGCCTGC----------------------------------------------
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---------------------------------------------------GCGTCCTCCACCATCCGCATTAACCCCGC
CTGCGTCGCCAACCCCACCGCCACCGCCGCCAAGAAACCGAAGCGGCC---AGGGTCGTTCGACTGCGGGGATCCGCCGG
CGAAGCGCGTGCCCGGTGTTTCCGGCAAGGTCGAGCCCGAT------------GCCAGGACCAAGAAGAGCCCGCGTCCC
TGCCCCGTCAGCGAC------GAGGATCCGCGGAGCTCGCTGCCCCGCGGCGTCCAGGCCTCCCGCGTGGCCAAGAACCA
GAGCAGCGCCTCGCCGACTCGTCCTCCCGAGCTCACGGCGCCACCCAAGCCTCCAGCCTGCAGCATGCGCGAGCTCCTCC
AGAAGGCCCGGCTTGCCAAGAACCCCGGCAGCGCCTCTCCGCCGAAGCCGGTTGCCTGCG---GCGTGGGCGAGCTCCTC
GAGAAGACCCGTCCCGCCAAGGTTAGTCCTGCTGCTGCCGATGCT------GATGCTCAGCCTGAGGCCATCCACCGGCG
CGAGATCGAGCGGCGGAGGGCCGAGGCCCGCCGTGAGCTGGGGCAGATGGTTCGGACGGTGGAGTTCAACGACGCATTCA
TCGATCCCCAGGACGTGCTCAGGTGAAGCCAGGGATCCA-----------------------------------------
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>chr7B_443
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------------------------------------------CAGGGGCGGAGCCAGGATTTAGGCATAGGGGGGAC---
CAGACGGCA-TGAAGCCAGCAAATATTATGCCTCACATACTACCCAATAATTTATATTCACATATCATTTTCATTTAACT
TTGACTGGGAACATAAG-TT--T--TTTTTAGCA-CCGGAGCCTGTGTAG-AAATAGCTAATATTGATCAATAATTCCAC
TTAAACGCCAAGAAGACGAATTTGATTATTAAACTACTCCGAAATACGACATGAGATGCCATGCTCTTAAACATTGTCAC
ATGGGAATTTAAGATATATGAACAAGAATA-TCATGTATTAT-ACTTGGTTGGCTTTTAACTTGCATTTAAATAGGTTTG
AATGAGAAATCACCACTGGTTGTATTAGAAAAAAATTATTGTTTAGTTAGCAAAATTTGATCAACGGTTCTAGAACACAT
ACCTAGAAAACCAAATCGACCCCTCCTTATACCCT--------TTGCC--------GCTAGGTTCAAGTAGATCGGCTAG
TCGTCGTTGGCAGGCATATGCGACAACCATCACTGTATATGAATGCTCAACCAAACATTGACGAGCGTA-----------
TATTTCAGGTGCTTTAACCTAGCGCAACAACGCATCACAAATCACACAACAAAATA---ACTTAAATCAGATGTAGAAGT
TCAATACAATACAAGATTAGAATTGAGAGAGATTAGTAGGTGGTGTGATGTGTTAACATCGGCTAATTCGTTGGC--TAG
CATGAAGAAAATTGGTGGGTGAAGCAGTCTGCGTCGCCGTATGAATTAGATTACATTTTTTTTG-----AGGC-AATGAA
TCAGATTAGATGGATGGAAGAGCAGAGATAGGCAGGCGGCGAAGGCGTAGGACGGCAGCGGCTCAGCGCTAATCCAGCAC
GCCCTAATCAGAT----AATGCTCATCGCCAAGAGATTTAGCG-----------GAGGCCCATCGTACAATCCA------
-----CCTTGGCATGGACTTAGAAAACGACTAACTAGTGGGCTTGTACATGGGCCTTTTCC-TTTCTCCAGTTTTCACGT
AA----CGATAGGGGGGGCCAAGTACGTTGTACCTGCGAATCTTATCGCTAATTAACTGCTAACACGAGATATCTGCTCG
ATCGTTAGGGGGGGCCTGGCCCCTGCTCGCCCCCCCCTTGGCTC------------------------------------
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>chr4A_443
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------------------------------------------CAGGGGTGGAGCCAGGATTTAGGCATAGGGGGG-C---
CAGACTGCGACGAATCCAGCAAATATTATGCCTCGCATAGTATCCAATAGTTTATACTCAAGTATCGTTCACATTTAACT
TTGCTTGGTCACATAAGGTT--T---TTTGGGCAGCTGGAGCATGTGTAG-CGATAGCTAATATTTGTCAATAATTCCAC
ATACGCACCAAGAGGACGAAGTTGATAATCAAACTACTATGAAATATGACATGAAATGACATACTATTAAACATTGTCAT
ATGGAAATTTAAGACATACGAACAAGAATAATCATGTATTATCACATGGTTGGCTTTTAACTTGC-TTTATATAAGTTTG
AATGAGAAATGATCACTGGTTGTATAGGAAAAAAATAATTGTTTAGTTAGCAAAAATTGATCATTGTTGCTAGAATACAT
ACCTAAGGAACCAAATCCGCCCCCC-TTAT--------CCCTTTTGCC--------GCTAGGTCCAAGTAGATCGGCTAG
TCGTTGTTGGCGGGCATATGTGACAACCATAATTGTTTACGGATGCCCGACCAAGCATTGACGAGCCCGACCTTTCAAAC
TATTGCAGGTGCCTTATCCTAGCGCAACTACGCATCACAAATCACACAACAAAATA---ACTTAAATTAGATGGAGAAGT
GCAATATAATACAATATTAGAATTGAGAGAGATTAGTAAATGATGTGATGTGTTAACCTTGGCTAGTTCGTTGGCCGTAG
CATGAAG--AATTGGTGGGTGAAGCAGCTTGCA-----------------------------------------------
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>chr2A_443
CAGGG---------------------------------------------------------------------------
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------------------------------------------------CGGAGACAGGATTTAGGCATAGGGGGGGGGGG
CAAACGGCCACAAAGCCAGCAAATATTATGCCTCGCATACTGCCCAATAGTTTATACTCAAGTATCATTCGTATGAAACT
TAGCTTGGACACATAAG-TT--TTCTTTTTGGTAGCTGGAGCGTGTGTAG-TGGTAGCTAATATTGGCCAATAATTCCAC
ATACGCGCCAAAAAGACGAAGTTGATAATCAAATTACTATAAAATACGACATGAAACGACATGCTAATAAACATCGTCAT
ATGGAAATTTAAGATATACGAACAAAAATAATCATGTATTATCACATGGTTGGCTTTTAACTTGCATTTATATATGTTTG
AATGAGAAATCATCACTGGTTGTATAGGAAAT-T-TTATCGTTTAGTTAGCAAAAATTGATCAAGGTTGCTAGAATACAT
ACCTAGAGAACCAAATCCGCTCCTCCTGATGCCCTTTGCCCCTTTGCT--------GCTAGGTCCAAGTATATCGGCTAG
TCATCATTGGCGGGCATATGCCATAACCATAATTGTTTACGGATGCTTGACCAA--------------------------
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>chr7A_443
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------------------------------------------CAGGGGCGGAGCCAGGATTTAGGCATAGGGGGG-C---
CAAACGGCGACGAAGCCAGCAAATATTATGCCTCGCATACTGCCCAATAGTTTATACTCAAGTATCATTCGCATGAAACT
TAGCTTGGACACATAAGTTTTCT---TTTTGGCAGCTGGAGCGTGTGTAG-TGATAGCTAATATTGGTCAATAATTCCAC
ATACGCGCCAAAAAGACGAAGTTGATAATCAAATTACTATAAAATACGAGATGAAACGACATGCTAATAAACATTGTCAT
ATGGAAATTTAAGATATACGAACAAAAATAATCATGTATTATCACATGGTTGGCTTTTAACTTGCATTTATATATGTTTG
AATGAGAAATCATCACTGGTTGTATAGGAAAT-T-TTATCGTTTAGTTAGCAAAATTTGATCAAGGTTGCTAGAATACAT
ACCTAGAGAACCAAATCCGCCCCTCCTGATCCCCT--------TTGCCCCTTTGCTGCTAGGACCAAGTAGATCGGCTAG
TCATCATTGGCGGGCATATGCCACAACCATAATTGTTTACGGATGCTCGGCCAA--------------------------
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>chr2A_444
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-------------------------------------------AGGGGCGGAGTCAGGATTTAGGCATAGGGGGGGC---
CACACGGCATTGAAGCCAACAAATATTATGCCTCACATACTACCTAATAATTTATATTCACGTATCATTCTCATTTAACT
TTGCCTGGGAACATAAG-TT--T--TTTTTGGCTGCCGGAGCGTGTGTAGCAAATAGCTAATATTGGTCAATAATTCCAC
TTAAATGCCAAGAAGACGAATTTGATTATCAAACTACTCTGAAATACGACATGAGATGCCGTGCTATTAAACATTGTCAT
ATGGGAATTTAAGATATACGAACAAGAATAATCATGTATTATCACTTGGTTCGCTTTTAACTTGCATTTACATAGGTTTG
AATGAGAAATCATCACTGGTTATATTAGAAAAAA-GTATTGTTTAGTTAGCAAAAACAGATCAACGTTGCTAGAACACAT
ACCTGGAAAACCAAATCGAA------------------------------------------------TACATCGGATAG
TCGTCGTTGGCAGGCATATGCAACAACCATAACTGTATATGAATGCTCACCCAAACATTGACGAGTCTGAGCTTTCGAAC
TATTTCAGGTGCTTTAACCTAGCGCCGCAATGCATCACAGATCACACAACAAAATA---ACTTAA-TTAGATGTAGAAGT
TCAATACAATACAAGACTAGAATTGAAAGAGATTAGTAGGTGGTGTGATGTGTTAACCACGGCAAGTTCGTTGGC--TAG
CATGAAG--AATTGGTGGGTGAAGCTGCCTGCATTGCCGTATGAATCAGATTAGATTTTTTTTT-----AGGCCGATGAA
TCAGAT----TAGATGGAAGAGCAGAGATAGGCAGGCGGCGAAGGCGTAGGACGGCAGCGGCTCAGCGGT----------
------------------------------AATCCAGCACGCCCTAATCACGGAGAGGCCCATCTTACAATCTA------
-----CCTTGGCATGGACTTAGAAACGACT--------------------------------------------------
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>chr3A_500
--------------------------------------------------------------------------------
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-----------------------TATTATGCCTCATAGATTATATAATAATTTATATTCATGTATCATTCTCATTTAACT
TTGCCTGGGAACATAAG-TT--T--TTTTTGGCTGCCGGAGCGTGTGTAGCAATA-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------GCGATGTGTTAACCTCGGTAAGTTCGTTGGC--TAG
CATGAAT--AATTGGTGGGTGAAGCAGCCTGCATTGCCGTATGAATCAGATTAGATTTTTTTTTTT---AGGC-AAAGAA
TCAGGT----TAGATGGAAGAGCAGAGATAGGCAGGCGGCGAAGGCGTCGGACGGCAGCGGTTCAGCGCTAATCTAGCAC
GCCCTAATCACTGACAGAATGCTCAACGCCAAGAGATTTAGCG-----------GAGGCCCATCGTACAATCTA------
-----CCTTGGCATGGACTTAG----------------------------------TTTTCCTTTCTCTAGTATTCGCGT
AACGATCG--AGGGGGGGCCGAGGACGTTGTACCTGCAAATCTTATCGCTAATTAACTGCTGATACGAGATGTCCGCTCG
ATTGTTAGGGGGGGCCTGGCCCCTGCTCGTCCCCCATCGGCTCCGCCA--------------------------------
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>chr7D_574
--------------------------------------------------------------------------------
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------------------TT--T---TTTTGGCAGTCGGAGCGTCTGTAG-CAATAGGTAATATTGGTCAATAATTTCAC
TTAAACGGCAAGAAGACGAATTTTATTATCAAACTACTCTGAAATACGACATGAAATGCCATGC----AAACATTGTCAT
ATGGGAATTTAAGATATACGAGCACGATTAATCATGTATTATCACATGGTTGGTTTTTAACTTGCATTTATATAGGTTTG
AATGAGAAATCATCACTT----TATTAGAAAAAA-TTACTGTTTAGTTGGCAAAAATTGAT-------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------GGTGTGAT---------ACGGCTAGTTCGTTGGC--TAG
CATGAAG--AATTGGCAGGTGT----------GTCGCCGTATGAATCAGATTA---------------------------
------------GATGGAAGAGAAGAGATAGGCAGGCGGCGAAGGCATAG-ACAGCAGCGGCTCAGCGCTAATCATGG--
---------AGAT----AATGCTCATCGCCAAGAGATTTAGCG-----------GAGGCCCATCGTACAATCTTTTTTTT
CTTTGCCTTGGCATGGACTTAGGAAACAACTAACTAGTGGGCTTATACATGGGCCGTTTCCGTTTCTCCAGTATGCACGT
AATGATA-----GGGGGGCCAACAACGTTGTACGTGTAAATATTATCGCTAATTAACTGCTGATACGATATGTTCGCTCG
ATCGTT-GGGGGGGCCTGGCCCCTGCTCGTCCCCCCTTGGCTCTGCCACTCGC---------------------------
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>chr3D_579
--------------------------------------------------------------------------------
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----------------------------TTGGCAGTCGGAGCGTGTGTAG-CAATAGCTAATATTGGTCAATAATTTCTG
TTGAACGCCAAGAAGACGAATTTGATTATCAAACTACTCTGAAATACGACATGAAATGCCATGC----AAACATTGTCAT
ATGGGAATTTAAGATATACGAACACGAATACTCATGTATCATCACATCGTTGGTTTTTAACTTGCATTTATATATGTTTG
AATGAGAAATCATCACTGGTTATATTAGAAAA-T-TTATTGTTTAGTTAGCAAAAATTGATCAACGTTGCTAGAACACAT
ACCTAGAAAACCAAATCCACTCCTCATTAT--------CCCCTTTGCC--------ACTAGGTTCAAGTAGATCGGCTAG
TCGTCGTTGGCAGGCAAATGTGACAACAATCACTGTATACGAATGCTCAACCAAGCATTGATGAGTCCGAGCTTTCGAAC
TATTTCATGTGCTTTAACCTAGCATAGAAATGCATCACAAATCACACAACAAAATACTAACTTAAATCAGATGTAGAAGT
TCAATACAGTACAAGATTATAATTGAGAGAGATTAGTAGATGGTGTGATGCGTTAACCTCGGCTAGTTCATTGGC--TAG
CATGAAG--AATTGGTGGGTG-----------------------------------------------------------
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>chr5A_674
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-------------------------------------------ATACGACATGAAATGCCATGC----AAACATTGTCAT
ATGGGAATTTAAGATATACGAACACCATTAATCATG--TTATCACATGGTTGGTTTTTAACTTGCATTTATATAGGTTTG
AATGAGAAATCATCACTGGTTATATTAGAAAAAT-TTACTGTTTAGTTAGCAAAAATTGATCAATGTTGCTAGAATACAT
ACCTAGAAAACCAAATCCACCCCTCATTATCCCCC--------TTGCC--------ACTAGGTTCAAGTAGATTGCCTAG
TCATCGTTGGCAGGCATATGTGACGACAATCACTGTATACAAATGCTCAACCAAGCATTGATGAGTCCGAGCTTTCGAAC
TATTTCATGTGCTTTAACCTAGTGTAGCAATGCATCACAAATCACACAATAAAATA---ACTTAAATCAGATGTAGAAGT
TCAATACAATATAAGATTAGAATTGAGAGAGATTAATAGATGGTGTGATGCGTTAACCTCGGCTAGTTCATTGGC--TAG
CATGAAG--AATTGGTGGGTG-----------------------------------------------------------
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>chr3B_2203
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---------------------------------------------ATTACATGCTCAGTTAGCCCTAATCTACTGAATCG
CTGGCAAATTTCTTTTTGTTAGTGCGAGTGCTATTCCTCCTTTTGATTATGCAA--AGTGATTTAATACATCAGTTATTA
ATCACTTGATTATTGGTAAACATCATTAGATGTATGATATCAGAAGAGCCTTGTCTAATCTATAGATACATTTGATCGAT
GATGTCCTTCTAGTTCTTATGGGGTGTCTTCAATCCACGTTTCCGCGGCTACAACAGTCAACAATAGTCAAGTGAAGGAC
ATGATGGCGCAGCGTGTTTTCTTACTGAACAGAGTGAACTTTATTCTGGAGCCTAGATAAATTTCCAGGATGATCGATTT
TGCTGATTTTATGAGTGAACTGCAATTCTTCTTAAACAACAATCTAACTAATACTAGTTGCT------------------
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---------------------------------TAACATATAAAAATGCCTAACGACGGTGCATTTGTTCGAGACAACAA
--TCATTTTCCCTCCTTTCT-AAAATATGCCAGAAGTGCCCGAATTTCATTACTTAAGAGGGAATTTAATATGCACACAA
ATAACAATCAAACCCTATGAGCCTTGTATGACTTAGGGTTGTTTGCTATCATTGGATGTGCCTCAACCCCATTGGCCGCC
ACCC--------------------------------------CTTTG---------------------------------
-----GATCTTATTTAGCAAAAAAGTTAGTCGTTGTTGCAAATTTGTGTAGTCCGTTTGAGTTAATCGACATTCCATCTA
TATCCGCAATATCCAGATTGCTTCTGCCATATTCTTGATCGTTT-TTTATTGCTTGCAAGTAGACCTTTTTGGTCAGGCT
AACCATGCATCCAA------CATTGACGGTAACATTCATGAGATTGGTTTAGCAATTACATAAGTGCAACATCGTCGCAC
ATTGTAGTCGGATCATCAAAGTCGTTCTCCATCCAAATCGACAAAATCTTTCTTATTAAAATATTGGGACACACTTGCCC
CTATCAATCAAGGACCCTAAAAAATGTGGATCTGTGCTCCGAGACACCTCAAGGAAAACCACTTAGTGATGGAGGTCATG
CTTTGTTGGCCGAGACTAAAAAAATGGCCGGGACTTTG------------------------------------------
---------
>chr3D_2390
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-----------------------------------------------------------------------------GAT
GATGTCCTTTTCGTTTTTACGGGGTGTCTTCAGTCCACGTTTCTGGGGCTACAACAGTCAAGAATAGTCAAGTGAAGGAC
ACGATGGCGCAGCGTATTTTCTTACTGAACAGAGTGAACTTTATTCTGGAGCCAAGGTAAATTTCCAGCATGATCGGTTT
TGCTGATTTTATGAGTGAACTTCAATTCTTCTTAAACAACAATCTACCTAATAATAGTTGCCTAAGAGCAATTCTAGCAG
ACCCCGCAAAAATTTGACCCGCAAAACGCGTTTGCGGGTCGAAAACTAGCGCGGCCGAACAGAAACCGTATCTAAACCTG
CATAATTTGAAAAACCACTTTCGCGGAAGAAATTGCACAAACATAGTTCATCACATACTACATAGTTCATCACATGATCA
ACAAGCTACAAGCATAGTTATACTACATACTATGTTAAACTAGTACTAGAGGGGCGTCGGATCTAACGGCGGAGAGGTCG
CGGCATATGGACGACGTCGTGGAGGAGTAGAACGCTCAATCCTCCTCGCCGGAGCTGCACAGGTCGACGTACTTTGCCGC
CTGCTCCTCGCGGATGCGGCGCCACTCCTCGGCCTTCTCCTTGGCGGTGAGGTTGTCGGCGACCGCCTGTCGCCACTTGA
GGTCTTCGAGCTCCTCGACGTGGCGCCGGCGCTCCGCCTCCTCGCGCACGCTCCGCTCGGCGATGGCGGCCGCAACGGTG
TCGACGTAGTCTTCTGGCCCGATGACCACGCGACGGCCGAGCGGAGCGGGCTCCTCGGGCTCCTCCTTCACGGGGACGAA
GGCGAACGCGTCCGGCTCCTCCTCGTCCTCCGACCACTCCCTCTTCATGGGGAGAAGGCCCGCGCCGGAGGAGGAGGAGC
TCCCGGCGTACAAGGACCTCGCGGAGGAGAAGGACGCGCGCCGGCGGTCGTACTCCTCTGTCTCACTCCGCTGGAAGCTC
GCCGGCGTCGACAGGCCGCGGTTGGTCCACTTCCGGGCCCTGCGCTTCCTCGCGCCGTCGGACCGTACGCGCCGCTCGCG
CTCCGGGTCCCTTCCGCCGCCGGATCTGCTGCCGGAGCCGCGTCCGGAGCTCCACATTCGGCCCCACATGGCGGCTGGAG
GCGGGGCAGGTGGTCACCGACGGCGAGAAATGTGGAGAGGGGGAAGGGGAATCGCGTGGCTCGGCGACGGCGAGGGATAG
GGTTTGAACCCGCAAACGAGTCGCGAAACCGCAGTTATAGCGGTCAGGGCGTGCGGTTTGCGGGCCGCGGCAAAAAATTT
TGCGGGCCGGGCGAGTATGCGGGCTCTGTTCTGGCCGGAAAATTGGGCCGAGCCCGCATACTCGCCGGAATTTTGCGGGT
CTGCGTGTTTTGCGGGGTCTGCTAGAGTTGCTCTAACATATGAAAACGCCTAACTACTGTGCGTTTGCTTGAGAATTTT-
TTTTATTTTCCATGTTTTCTGAAAATATGGCAGAAGTGCCCGAATTTCATTACTTAAGAGGGAATTTAATATGCACACAA
ATAACAATCGAACCCTATGGGCCTTGTATAACTTAGGGTTGTTTGCTGTCATTGGATGGGCATCAACCCCATTGGCCGCC
ACCC--------------------------------------CTTAGTCCTATATAGATAGATCAACCTCATAGTGTTTT
CTTTTGATTTTATTTAGCCAAAAAGTTAGTCGTTGTTGCACCTTTGTGTACTCCGTTTGAGATAATCAACATTTCATCTA
TACTCGCAATATCCAGATTGTTTCCACCACATTCTTGATTGTCT-TTTATTACTTGCAGGTAGACCTTCTTGGTCATGCT
AACCATGCATCCAA------CATTGACGGTAATATTCATGAGACTGGCG-------------------------------
---------------TCAAAGCCGTTCTCCATCCAAATCGACAAAATATTTCTCATTGTAAGATTGGGACACCCATGCCC
TTATC----AAGGACCTTAAAAGGTGTGGATTTATGCTCCGGGACACCTTAAGGAAAACCACTTAGTGATTGAGCTCATG
CTTCGTTGGCTGAGGCTAAAAAAATGGCCGAGACTTTGAGGTTGTGAGGTGCTTTGGTT---------------------
---------
>SNPs
S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------S
-----------------------------------------S------------------------------S-------
--------------------------------------------------------------------------------
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----------------S-------------S---SSSSSSSS---S----------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------------S--------------
-----------------S-----------------------------------S--------------------------
--------------------S-----------------------------------------------------------
----------------------------------------S---------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------S--------------------------------S----
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-----------------------------------------------------S--S---------SSS---S-------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------S---------
--------------------------------------------------------S-----------------------
--------------------------------------------------S----S------------------------
--------------------S---------------------------------------------------S--S----
--------------S-------------------------------------S---------------------------
---------------------------S----------------------------------------------------
---------------------------------------------------S------------S-S-------------
----S----------------------S--------------S---------S---------------------------
-------------------------------------------SSSSSSSS--S---------------------S----
-----------------------------------------------------S--------------------------
---------------------------------------------S-------------S-SSSSSSS-----------S
--S----S-----------SSSSSSSSS-------------------------S--------------------------
-------------------------------S------------------------------------------------
------------S---------------------S-------S----SS-------------------------------
------------------S--------------------------------------------S-------S--------
----S---------S---------------------S-S------S-----S----------------------------
--------------------------------S---------------S--S---S--S------S--------------
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--------------------------------------------------------------------------S-S--S
--S--------S-----------------S----------SS----S---------------------------------
-------------S-----------------S-----------------------S-----S------------------
---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------
----------------------------------------------------------S---------------------
--------------------------------------------S----------S------------------------
-----S-----SSSSSSSSS------------------------------------------------------------
----------------------S------------------------------------------------S--------
--------SS----------------------------------------------------------------------
-----------------------------------------------------------SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS
>forward_89
---------------------------------------------------------------------TGCCAAACCAA
ACACCTCCT-----------------------------------------------------------------------
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>reverse_2214
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-----------------------------------------------------CGACGGTGGAGTTCAACGA--------
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>forward_2128
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----------------------------CTCGTATTGCCGCTGAGGAT--------------------------------
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>reverse_4552
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-----------------------------------------------------------------------TCCTTGCCC
CTATCAATGGC---------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
