>input_sequence_55045
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------------------------------------------------------------------------ATGGGGAG
AATGGCTTCGGCGGCGGCGGTGGCTATGGCCGTCGTGGCGGTGCTGTGCGCGGCGGCGGTGGTGAGGGTGAGAGGGGAGG
ACACCGTGGACGAGGACACGCCCGGCGCGTCCTTCATCTTCGGGGACTCGCTGGTCGACGCCGGGAACAACAACTACCTC
TCCACGCTGTCCAAGGCCGACATGAACCCCAACGGCATCGACTTCGCCGCCTCCGGCGGGACGCCCACCGGCCGCTTCAC
CAACGGCCGGACCATCGCCGACATCATAGGTAATTTCAGTCCTTGTAACACGAAACATTTTCAAGTACTGAATAT-----
ATTATCCTT----GTACGATGAGCTTAGAGCTGCCATCGCACTCTGTTTTTTCTAGTAAGAAACAACGCAAAGTTGCCAT
CACTGTGTCACTTAAAACAGACGTAAACTCCAT-TTTCCAGGGGAGATGCTGGGCCAGGCGGACTACTCGCCGCCGTTCC
TGGCGCCGAACACGACGGGCGGCGCGCTGCTGAACGGCGTGAACTACGCGTCCGGCGGGGCCGGGATCCTGAACGGCACG
GGCAGGGTGTTCGTGAACCGGATCGGCATGGACGTGCAGGTGGACTACTTCAACATCACGCGGCGGGAGCTGGACGGCCT
GCTGGGCAAGGAGAAGGCGCGGGAGTTCATCCACAAGAAGGCCATCTTCTCCATCACCGTCGGCTCCAACGACTTCCTCA
ACAACTACCTGATGCCGGTGCTCTCCGCCGGCACGCGCGTGGCCGAGTCGCCCGACGGCTTCATCGACGACCTCATCATC
CACCTCCGGGAGCAGCTCACGCGGCTGCACGCGCTGGGCGCGCGCAAGTTCGTGGTGGCCAACGTGGGGCCGCTGGGGTG
CATCCCGTACCAGAAGACGCTGAACCGGGTCAAGGACGACGAGTGCGTGAAGCTGCCCAACACGCTCGCCGCGCAGTACA
ACGGTCGCCTCCGCGACCTCCTCATCGAGCTCAACGC---------CGGCGGGCTGCCGGGAGGCAGGTTCCTGCTGGCC
AACGTGTACGACCTGGTGATGGAGCTCATCGCCAACCACAGGAAGTACGGGTTCTCGACGGCCAGCGTGGCCTGCTGCGG
CAACGGCGGCAGGTACGCCGGGATCGTGCCGTGCGGGCCGACGTCCAGCATGTGCGACGACCGGGAGAACCACGTGTTCT
GGGACCCCTACCACCCCAGCGAGAAGGCCAACGTCCTGCTCGCCAAGTACATCGTCGACGGCGACAGCAAATACATCTCG
CCCATGAACCTCAGGAAGCTCTTCAAGCTCTAG-----------------------------------------------
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>chr2B_1_TraesCS2B01G138500
GGAGCCGGCGGGCAGTGGCAGAGCTAGAAAAACTGAATAAGGGTGGCCAAGGGGAAGGATTGATAAACTAGCTTGGGGAG
GGCCAAACCAACTAAATGCAAATCTAGTACACTGTTTTAGCATAAATACTCAGTGTTCTAGTGAAAAACATTGCATGTGG
GCCCTAGCTGGCACCCCTGTCTCCGCCATGGCTGGCGGGTGCTGTCCGCGGCACATCTGGTCTCGCCCGCGAGCACATTC
TGGGTGTTGGATTTGTCCAGTCCGGTTGTAAATCCTCTAAAAAAAGAATTTGCCTCACTAGCTTGAAAATGGAAAAGTAA
AAAAAAAAAAATCTCCATCACAATTTTCTTAATGCACCCC-AGGTTCTCCATCATCAACATCTATCTATTCCCTCGCCGC
AAAAAAAAAAACATATATCCACAGAAACCATCTGCCAGACAACGACGAGAGTAGTACATCTCTACCCCTGGAACGCGTGC
AACATCGTTTGGTTATTTCAGGCCACCTAAACCCCCACCCAACCGCGCCAACGCAGGGGGAAAGGCG-CCGCTTTTCGGG
AGCGCCCAACGCGCATCACCCGTCCCTGCTGACTCCGGCGGTCGCGCGCATACGTCTCCACTCTCGACTCGAGGCATACG
TGCAGGAGAGT----------------GAGACGTAACGCTTGTTTGCTTAACTACCATATCTAGCACTGTCCACCACA--
--------TGCGTCAAACCAGCAAACCAAACCCTCCACCACTGAGCTTCCATATCAAGCACCCCCATTGCAGACACGAAT
CCCACAAGCCACAGTCGATCCATCGAGCCGTGTGTTCTTCTCCCATCCATGGTCTCGCTCCCATGGAGATCCTGAGCTAG
GAGAAGGTGACATAAGGTCCAGATAGTCATCGACCGCGCCACCTAACGCGCGCCTCGCTGCCTA--TATA--CCCTGCTC
TTGTGGTGTCAGCTCAGTTCGTACGTGCGTGCTGTCGTTGCGAGTGGCAAGCTGACTCGAGGCTTGATCTGCATGGGGAG
AATGGCTTCGGCGGCGGCGGTGGCTATGGCCGTCGTGGCGGTGCTGTGCGCGGCGGCGGTGGTGAGGGTGAGAGGGGAGG
ACACCGTGGACGAGGACACGCCCGGCGCGTCCTTCATCTTCGGGGACTCGCTGGTCGACGCCGGGAACAACAACTACCTC
TCCACGCTGTCCAAGGCCGACATGAACCCCAACGGCATCGACTTCGCCGCCTCCGGCGGGACGCCCACCGGCCGCTTCAC
CAACGGCCGGACCATCGCCGACATCATAGGTAATTTCAGTCCTTGTAACACGAAACATTTTCAAGTACTGAATAT-----
ATTATCCTT----GTACGATGAGCTTAGAGCTGCCATCGCACTCTGTTTTTTCTAGTAAGAAACAACGCAAAGTTGCCAT
CACTGTGTCACTTAAAACAGACGTAAACTCCAT-TTTCCAGGGGAGATGCTGGGCCAGGCGGACTACTCGCCGCCGTTCC
TGGCGCCGAACACGACGGGCGGCGCGCTGCTGAACGGCGTGAACTACGCGTCCGGCGGGGCCGGGATCCTGAACGGCACG
GGCAGGGTGTTCGTGAACCGGATCGGCATGGACGTGCAGGTGGACTACTTCAACATCACGCGGCGGGAGCTGGACGGCCT
GCTGGGCAAGGAGAAGGCGCGGGAGTTCATCCACAAGAAGGCCATCTTCTCCATCACCGTCGGCTCCAACGACTTCCTCA
ACAACTACCTGATGCCGGTGCTCTCCGCCGGCACGCGCGTGGCCGAGTCGCCCGACGGCTTCATCGACGACCTCATCATC
CACCTCCGGGAGCAGCTCACGCGGCTGCACGCGCTGGGCGCGCGCAAGTTCGTGGTGGCCAACGTGGGGCCGCTGGGGTG
CATCCCGTACCAGAAGACGCTGAACCGGGTCAAGGACGACGAGTGCGTGAAGCTGCCCAACACGCTCGCCGCGCAGTACA
ACGGTCGCCTCCGCGACCTCCTCATCGAGCTCAACGC---------CGGCGGGCTGCCGGGAGGCAGGTTCCTGCTGGCC
AACGTGTACGACCTGGTGATGGAGCTCATCGCCAACCACAGGAAGTACGGGTTCTCGACGGCCAGCGTGGCCTGCTGCGG
CAACGGCGGCAGGTACGCCGGGATCGTGCCGTGCGGGCCGACGTCCAGCATGTGCGACGACCGGGAGAACCACGTGTTCT
GGGACCCCTACCACCCCAGCGAGAAGGCCAACGTCCTGCTCGCCAAGTACATCGTCGACGGCGACAGCAAATACATCTCG
CCCATGAACCTCAGGAAGCTCTTCAAGCTCTAGACAGACAGAGAGACTCGACTCAGATCGATC---TGGCTTCGTTCCGT
CGGTGACATTTTGCGTTTTGGTTCGCGAAGTTTGGCGTGTATAACTTGGGAACATATTTGATGTATGAACCCTAGCTATG
GGCGATCGCGCGTGTGTACGACTGGTTTGAAGTCGATTTTACTTTTTTGAAAACAATACAAATGCAGAGACTCACATGCA
CGTCACCGTACGAAACACACACGCACACGACGCAAAATGCGTTCCTGTCTTCGTCAATTGTACACGTGCGCTTTCAAGGG
CAATTGGATCGCACACGTGAAAGTTTGTTCGACAGATAAGCGGGTCCGAACCGCTGGCATCCGCCACAGGGTAAACCACC
CGCCTCTCAGGCCTTCCCAACGGGTTCTACCAT-GAGGCCAACGATAGATAATAACTCCTCCCGAACATAGCTTAAAACT
TTCATCATATTGTGCTCTCTAAAGAACAACTCTTCCCAAAATCTCAAGACAACATGCCCCCTTAAAATG-AATTTACGTA
CAGTGAAACATCAGACGGAACAAATCCCGTAAACCCGTACAGTAGGAGTTCTTTTTTCTCCGCACGTTT---TTTCTCGA
GATGCACGCATGGATGAACTCGAACTCTGGCCGACCCAAAATTACGCCGCTTCGCGAT-GCTCTGGCGATGCTCCGGCCC
GTCCTGTGCTCCAATGATGCTCCAGGCAGCTGTTGCCCAGCTCCTTCGCCTGCTCGCTGCTTGCGCGCGGCGTAGCCAAG
TCCC--TACTCCGACGTTAACTGGTTTACAGGTTCCCTCAAAAAACGGCTCGGTATATAACGGATGGTTGCTCTAATGTA
CGAGAACCTTAAAAAAA-TTATGGGATCTGCTATTTTACAGGATCTATTTGGTATGTTTTTTATAATTTGTACAATAAAT
TTAAAAGTTTGACTGCTTTTATAGGATTTGCTAGAGATGCTCCCATGAAGAAGTTTGGTGCCCAAAAATGAGGATAGGAG
AAAAG
>chr2D_298
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---------------------------------------------------------CTAACTTGAAAATAGAAAGT---
--AAAAAAAAATCCCTATCACAATTTTCTTAATGCACCCCCAGATTCTCCATCACCAACATCAATCCATTCCCACGAAGC
TGCAAACC----------CCACAGAGACCATCTGCCAGACAACGACGAGAGTAGTACACCTCTGCCCCTGGAACGCGTGC
AACATCGTTTGGTTATTTCAGGCCACCTAAACCCCCACCCGACCGCGCCAACACAGGGGAAAAGGCG-CCGCTTTTCGGG
AGCGCCCAACGCGCATCAACCGTCCCTGCTGACTCCGGCGGTCGCGCGCATACGTGAGGAGAGCAGCGAC----------
-----GAGAGT----------------GAGACGTAACGCTTGTTTGCTTAACTACCATATCTAGCACTGTCCACCACA--
--------TGCGTCAAACCAACAAACCGAACC--CCTCCACTGAGCTTCCATATCAAGCACCCCCACTGCACACACGAAT
CCCACAAGCCACAGTCGATC-ATCGAGCCGTGCGTTCTTCTCCTATCCATGGTCTCGCTCCCATGGAGATCCTGAGCTAG
GAGAAGGTGACATACGGCTCAGATAGTCATCGACCGCGCCACCTAACGCGCGCCTCGCTGCCCATATACCCTCCCTGCTC
TTGCGGTGTCAGTTCAGTTCGTACGTGCGTGCTGTCGTTGCGGCCTTGCGGGTAGCTCC-------ATCTGCATGGGGAG
AATGGGTTCGGCGGCGGCGGTGGCGGTGGCCGTGGTGGCGGTGCTGTGCGCGGCGGCGGTGGCGAGGGTGAGAGGGGAGG
ACACCGTGGACGAGGACACGCCCGGGGCGTCCTTCATCTTCGGGGACTCGCTGGTCGACGCCGGGAACAACAACTACCTC
TCCACGCTGTCCAAGGCCGACATGAACCCCAACGGCATCGACTTCGCCGCCTCCGGCGGGACGCCCACCGGCCGCTTCAC
CAACGGCAGGACCATCGCCGACATCATAGGTAATTT------------------------TCAAGTACTGAATATACTGT
ATTATCCTTGTACGATGAGCCTA----------------------------------------------G-AGTTGCCAT
CACTCTGTCACTTAAATATGTATGCAAATTCCAATTTTCAGGGGAGATGCTGGGCCAGGCGGACTACTCGCCGCCGTTCC
TGGCGCCGAACACGACGGGCGGCGCGCTGCTGAACGGCGTGAACTACGCGTCCGGCGGGGCCGGGATCCTGAACGGCACG
GGCCGGGTGTTCGTGAACCGGATCGGCATGGACGTGCAGGTGGACTACTTCAACATCACGCGGCGGGAGCTGGACGGCCT
GCTGGGCAAGGAGAAGGCGAGGGAGTTCATCCACAAGAAGGCCATCTTCTCCATCACCGTCGGCTCCAACGACTTCCTCA
ACAACTACCTGATGCCGGTGCTCTCCGCCGGCACGCGCGTGGCCGAGTCGCCCGACGGCTTCATCGACGACCTCATCATC
CACCTCCGGGAGCAGCTCACGCGGCTGCACGCGCTGGGGGCGCGCAAGTTCGTGGTGGCCAACGTGGGGCCGCTGGGATG
CATCCCGTACCAGAAGACGCTGAACCGGGTCAAGGACGACGAGTGCGTGAAGCTGCCCAACACGCTCGCTGCGCAGTACA
ACGGCCGGCTGCGCGACCTGCTCATCGAGCTCAACGC---------CGGCGGGCTGCCGGGGGGCAGGTTCCTGCTGGCC
AACGTGTACGACCTGGTGATGGAGCTCATCGCCAACCACAGGAAGTACGGGTTCTCGACGGCCAGCGTGGCCTGCTGCGG
CAACGGCGGCAGGTACGCCGGGATCGTGCCGTGCGGGCCGACGTCCAGCATGTGCGACGACCGGGAGAACCACGTGTTCT
GGGACCCGTATCATCCCAGCGAGAAGGCCAACGTGCTGCTCGCCAAGTACATCGTCGACGGCGACAGCAAGTACATCTCC
CCCATGAACCTCAGGAAGCTCTTCAAGCTCTAGACGGAGA--GACTGGCTC----GATCGATC---TGGCTTCGTTCCGT
CGGTGACATTTTGCGTTTTGGTTCGTGAAGTTTGGCATGTATAACTTGGGAGCATATTTGATGTATGAACCCTAGCTATG
G-CGATCGCGCGTATGTACGACTGGTTTGAAGTCGATTTTT-TTTTTTGAAAACAATACAAATGCAGAGGCTCACATTCA
CGTCACCATACGAAACACACACGCACACGATGCAAAATGCGTTCCTGTCTTCGTCAATTACACATCTGCACTTGGGTCGC
ACGCGTAC----------GAGAGTTTCTCCGACAGATAAGCGGATTTGAACCGCTGACATCCACCCTAGGGTAAACCACC
-GTATCTCAGACCTCCCTGACGGGTTCTATCATAGAGGCCAACGATAGACAATAACTCCTCCCGAACATAGCTTACAACT
TTCATCGTATTGTGCTCTCCAAAGAGTAACTCTTCTCAAAATCTCAAAACAACATACCCCCTTAAAATG-AATTTACGTA
CCGCGAAGCATCAAACGGAACAAATCCCGCAAACCCGTATC-TAGGAGTTTTATTTTCTCCGCACGTTTCGTTTTTTGGG
GACGCACGGATGGATGAACTCGAACTCCGGCTGACCCAAAAAGACGCCGCTCCGGCGATGCT----------TCCGACCC
GCCCCGTGCTCCAATGATGCTCCGGGCAGCCGCTGCCGAGCTCCTCCGCCTGCTCGCTGCTCACGGTCGGCGTAGCCAAG
TCCCC-TACTCTAGCGTTGATTGGTTTACAGGTTCCCTCAAAAAATAGCTTGGTATATAACGGATGGTTGCTCTAATGTA
CGAGAACCTGTAAAAAAGG---GGGATCTGCTATTTTACAGAATCTATTTGGTATGTTTTT-ATAATTTGTACCGTAAAT
TTAAAAGTTTGACTGCTTTTATAGGATCTGCTAGAGATGCTCCAATGAAGAAGTTTGGTGCCCAAAAAAGAGGGTAGGAG
AAAAG
>chr2A_418
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------------------CCACAGAAACCATCTGCCAGACAACGACGAGAGTAGTACACCTCCGCCCCTGGAACGCGTGC
AGCATCGTTTGGTCATTTCAGGCCACCTAAACCCCCACCCAACCGCGCCAGCAGAGGGGAAAAGACGCCCGCTTTTCGGG
AGCGCCCAACGCGCATCAACCGTCCCTGCTGACTCCGGCAGTCGCGCGCATACGTCTCCACA--CGACTCGAGGCATCCG
TGCAGGCAGGAGGGCAGCGACGAGGGCGAGACGTAACGCTTGTTTGCTTAACTACCATATCTAGCACTGAGTGCTACCAA
GCCTTAAGTGCGTCAAACCAACAAACCAAACCCTCTACCACTGAGCTTCCATATCAAGCACCCCCACTGCACACACGAAT
CCCACAAGCCACAGTCGATCGGTCCAGCCGTGTGTTCTTCTCCCATCCATGGTCTCGCTCCCATGGAGATCCTGAGCTAG
GAGAAGGTGACATACGGTCCAGATAGTCATCGACCGCGCCACCTAACG-GCGCCTCGCTGCCTGCCTATA--CCCTGCTC
TTGTGGTGTCTGCTCAGTTCGTACGTGCGTGCTGTCGTTGCGAGTGGCAAGCTGACCCGAGGCTTGATCTGCATGGGGAG
AATGGCTTCGGCGGCGGCGGCGGCGGTGGCCATCGTGGCGGTGCTGTGCGCGGCGGGGGTGGTGAGGGTGAGAGGGGAGG
ACACCGTGGACGAGGACACGCCAGGGGCGTCCTTCATCTTCGGCGACTCGCTGGTCGACGCCGGGAACAACAACTACCTC
TCCACGCTCTCCAAGGCCGACATGAACCCCAACGGCATCGACTTCGCCGCCTCCGGCGGGACGCCCACCGGCCGCTTCAC
CAACGGCCGGACCATCGCCGACATCATAGGTAATTTCAGTCCCTGTAACACGAAACATTTTCAACTACTGAATAC-----
ATTATCCTTGTACGTACGATGAGCTTAGAGTTGCCATCACACTGTTTTTTC-----TAAGAAGCAACACG-AGTTGCCAT
CACTCTGTCACTTAAA-CAGATGTAAACTCCAT-TTTTCAGGGGAGATGCTGGGCCAGGCGGACTACTCGCCGCCGTTCC
TGGCGCCGAACACGACGGGCGGCGCGCTGCTGAACGGCGTGAACTACGCGTCCGGCGGGGCGGGGATCCTGAACGGGACG
GGGCGGGTGTTCGTGAACCGGATCGGCATGGACGTGCAGGTGGACTACTTCAACATCACGCGGCGGGAGCTGGACGGGCT
GCTGGGCAAGGAGAAGGCGCGGGAGTTCATCCACAAGAAGGCCATCTTCTCCATCACCGTCGGCTCCAACGACTTCCTCA
ACAACTACCTGATGCCGGTGCTGTCCGCCGGCACGCGCGTGGCCGAGTCGCCCGACGGCTTCATCGACGACCTCATCATC
CACCTCCGGGAGCAGCTCACGCGGCTGCACGCGCTGGGCGCGCGCAAGTTCGTGGTGGCCAACGTGGGGCCGCTGGGGTG
CATCCCGTACCAGAAGACGCTGAACCGGGTCAAGGACGACGAGTGCGTGAAGCTGCCCAACACGCTCGCCGCGCAGTACA
ACGGGCGACTCCGCGACCTCCTCATCGAGCTCAACGGCAACGGCGGCGGCGGCCTGCCGGGGGGCAGGTTCCTGCTGGCC
AACGTGTACGACCTGGTGATGGAGCTCATCGCCAACCACAGGAAGTACGGCTTCTCGACGGCGAGCGTCGCCTGCTGCGG
CAACGGCGGCAGGTACGCCGGGATCGTGCCGTGCGGGCCGACGTCCAGCATGTGCGACGACCGGGAGAACCACGTGTTCT
GGGACCCGTATCATCCCAGCGAGAAGGCCAACGTGCTGCTCGCCAAGTACATCGTCGACGGCGACAGCAAGTACATCTCC
CCCATGAACCTCAGGAAGCTCTTCAAGCTCTAGCCGGAGAGGGACTGGCTC----GATCGATCTGGTGGCTTCGTTCCGT
CGGTGACATTTTGCGTTTTGGTTCGCGATGTTTG-----------------GCATGTTTGATGTATGAACTCTAGCTATG
GGCGATCGCGCGTATGTACGACTGGTTTGAAGTCGATTTTT-TTAA---AAAACAATACAAATGCAGAGGCTCACATGCA
CGTCACCATACGAAACACACACGCACACGATGCAAAATGCGTTCCTGTCTTCGTCAATTGTACACGTGCGCTTTCGAGGG
CAATTGGATCGCACACGTGAAC------------GATAAGCGGATCCGAATCGATGACATCCACCACAGGCTAAACCATC
-GCCTATCAGCCCTTCCCAACGGTTTTTACCAT-GAGGCCAACGATAGACAATAACTCCTTTCGAACACAGCTTACAACT
TTCATCGTATCGTGTTCTTCAAAGAGCAATTTTTCTCAAAATCTTAAGACGATATGCCCCTTAAAATGAAAATTTACGTA
CCGTAAAGCATCAGACGAAACAAATCCCGTAAACGTCTATCGTATGAG-TTTTTTTTCTCTGCACGTTT---TTTTTCGG
GACACACGCATGGACGAACTCAAACTCCGGCCGACCCAAAATGACGCCGCTCCGGCGACGCTCTGGCAATGCTCCGACCC
GCCCCGTGCTCTAGTGATGCTTCAGGTAACCGCTGCCAAGCTCCTCCGCCTGCTCGCTGCTCGCG--CGGCGTAGCCATG
CCCCCCTACTATGGCATTGACTGGTTTACAGGTTCAATCAGAAAACGCCTCGCTATATAACGGATGGTTGCTCTAATGTA
CGAGAACCTATATTTTTTTTACGGGATCTACTATTTTACAGGATCT-TTTGGTATGTTTCT-ATAATTTGTACAGTAAAT
TAAAAAATTTGACTGCTTTTATAAGATCTACTAGAGATGCT---------------------------------------
-----
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S---------S----SSSSS
SS-----------S-S---------------------------S----------S-------S---S------S--SS--
SSS---SSSSSSSSSSSS----------------------------------------S----S----------------
----------------------------------------------------S------S--------------------
------------------S------------------------------------------SSS-------------S--
--------------------------------------------------------------------------------
--------------------S---------------------------------------------S----S--------
--------------------S-----------------------------------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------SS------------------------------------------------------
-------------------------S------------------------------------------------------
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------------------------------------------S-------------------------------------
------------------------------S-------S----S-S----SSSSSS------S----S-SS---------
----S-----------S----S---------------S------------------------------------------
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---S----------------------------------------------------------------------------
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----S--S-----------------------------------------------------S------------------
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-------S--S--S--------------------S-----------------------------------S--------S
-----------------------------------S--S--S--SSSS-SSSSSS-------------------------
------------------------------------S--------------S----------------------------
-------------S--------------------------SS---------------------------S----------
-------S----------------------S--------------------------------------------S----
--------------------------S-S--------------S------------S-----S-----------------
S---------S--------------------------------------S-------------------------S----
------S------------S-----S---------S--------------------------------------------
-S-----S-------------------------------SS---------S------------------------S---S
--S------------------------S--------------S--------S--SSSS---------S--------S---
-S--S-------------------------S-S----S-------S---------------S---SS-------------
-----------S-S----S-------------------------------------------------------------
---------SS----------S---------------------------------------S------------S-----
---------------------------S---------------S------------------------S----S------
-----
>forward_30
----------GGCAGTGGCAGAGCTAGAAA--------------------------------------------------
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>reverse_1146
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-------------------------CGCGTCCTTCATCTTCGGG------------------------------------
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>forward_164
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----------------------------------------------------------------AAAACATTGCATGTGG
GCCC----------------------------------------------------------------------------
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>reverse_1431
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----------------------------------------------------------------------AAGTTGCCAT
CACTGTGTCAC---------------------------------------------------------------------
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>forward_741
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-CACCACATGCGTCAAACCAG-----------------------------------------------------------
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>reverse_2636
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---------------------------------------------------------------------------AAGGG
CAATTGGATCGCACA-----------------------------------------------------------------
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