>input_sequence_55044
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-----------------------------------------------------------------------------ATG
TTGCGATCGATCATCGCCCGATCTCAGCCCCTTCTTTCCCACCTCCGGTGGCGAGCAGCCGCCGCT------CCGGGCGC
TGCCAAGCCAAGGATCCTCCCATTACGTGCGTAC-------GCCACCGACGACGACACGGCACGGCCCAACGGAGCTGAT
GG---CAGGACGGCGGCGGCGGAGTCCAATCTGCGGCGGCATCTGTACGTGGTACTCAAGGAGAGGCGCTCGGTGACC--
-------CACAGCATCTACAAGCTCGACGTCGACGACCTCCACGACGG------CG------------AGCACGCGACCG
TCGCGGACGAGGCGCCGCGCCGCCTCCCGGGACGAGCCCTCCGCCTGGGCGCCTCGTTGGTGGGCACATACAAT---GAC
ACGCACTTCGATGCCGTCGGCAGCAACATCGTCATGACGACTCACTCCAGCACCCTCTCCGTATTGTTCGCCGGCACTCC
GTACTTCCTCACCTTGGTGTACGACACCAAGACGGGGAAGCTGGACGGCGGGAGGCCTCCACACGAGTTCCCGCCCGGCC
CCTTCGACTCCGAGCCCGACGGCGACGTG--CTG-------GAGGCGAGGAAATGGTTCCCGTCTCACCCCTACCAATCC
GCGCC---CGTCGGCGAC---AAGCTGTGGGCGCTAAACGGCGAGGAAGAAAATACGCCAGGCTACTTAGCATACGAGGA
GCCTGACGA--------GGAGTGGGCCTGGAAGATGTGCCGGCGGCCGCTCCCGCTCGACGCCGGCGGCGGCCGCAGCCG
TGTCATGTCGCACGCGGTGCA-CCCGGACGGCCGCACCGTCTTCGCCTCGTCCTCCTTCACCTTCTCGCTCGACACCAGG
CGCTGCCGGTCGGCGCGCCGCGGCGACTGGCGCCTGCCGTTCCACGGCCGCGGGCACTAC--------GACGGCGAGCTG
GGCGCGTGGGTCGGGATCCGGGAGGCCGACGGCACCGACGGCGGGGTCAAGGGAAGTCCCTACCTTTGCTCCTGCGACGT
CCCGGACCTCGCTGGCGTCGACGTCGAGGGGCCGGTGCCGGCGCCGGCGTGGAGGATGTGCGATCAGGAGCTCACGTTCC
TCAAGACGCCGGTGAACCTCGGGTGCCGCGCACTCGTCCACGTCGGGCATGGGCGGTTCTGCCTCGTCGAGGTCGTGCCG
GCGGCGTCGGTCGCCG---AGGGAGCGAAAGCTAGGGGTGGA------------------GAGTGCCTGCTCCATGTGAC
CGTGTTCCGCGCTGAGCATTGCAAGAACGGCGAACTCGTGGTCACGCCGTGCCGA-------------------------
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-------------------------------------------------------------------CCTGGCCGCTCCT
ACCTCGTGCCCAATTGTTCTCTGTGCTTGCCCGGCGCGTTCTGGATT---TGA---------------------------
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-----------------
>chr2A_1_TraesCS2A01G139000
TTTTTTCCTGCAAAGTTTATTTCGTGCACTAGTGTGGAGCTATGCCCTCGAGATGTTCAAGTAATAACTCCCTTAGTC-A
TGGAAGTGCAGTTTGTTATCTTTACTGAGACCGGTCATGTTGGTAGCAATTGACTCAAATTTTTTGCTTGCTCTTATACG
CTATCATTTGCACACGTATATATGCAGGTATGGATACTGGTGATGGTCCTAGAAGCTGACATTTCATATTGAAATTATCA
CAACGATCCTGGTGAAAGAAATA-AAATTACAGTTTTGTCTTCCCTTTT----CTCCAGTTTTCTCTTTCCTATGACATT
CCATTCAGAGAGATTTTATCTCCAGTCGGCAACAGAATGTTAGTTGTTACAATATGGGTCT---GAGCTCATTCGACCGA
GACTACTTAACCAAGTCTCAGCCGAGTGACGTCACCATAGTTGTGGTGCTATGAACGACATGATTGGATGCTGCAATCGG
TGGTACGACAAGCTGCAACGGGGAAGGTAGACGCTGCGAGACATGCTGTGAGCAACGACGACGGACGCCGGAACAGATGA
GGCTTAGTGCTGCATACAACGATGGTGGAATCTGTGAATGACAGAACAATGTGCTTCGAGCGATGAGGGCGAACACAACA
AT--GTGACATGACATGCTGCAGCCAGTACCGACGGATGCTGCGACTGATGAGATGAAGTGCTGCAAGCGGTGGGAAGAT
GTGCTACGAGGTCTGTTTGACGTTGTTCAA-CTAGCACGAATCTCCGCACAAAGATCCAATGGTTAGTCTA-AGCCGACT
GAGCTTGAGCAAACCCGTTAGTACAAAATTGTCTTCCCTAAAATG--------AGATAATAATAAGGAAACTAACAAAAT
CAGCCGGCTCTAGTATA---------------------------------------------------------------
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-------------------------TAGCAAGATTTGTCCAATCCCAACCAA-TTATATAGCGCGTGGTAACTCAAGAGT
CAAGACGAATCACGATCGCATCATTTTTTTT---CTTTCTCGCGGACTATCACGATCTGAATTTCTTCCCACG----ATG
TTGCGATCGATCATCGCCCGATCTCAGCCCCTTCTTTCCCACCTCCGGTGGCGAGCAGCCGCCGCT------CCGGGCGC
TGCCAAGCCAAGGATCCTCCCATTACGTGCGTAC-------GCCACCGACGACGACACGGCACGGCCCAACGGAGCTGAT
GG---CAGGACGGCGGCGGCGGAGTCCAATCTGCGGCGGCATCTGTACGTGGTACTCAAGGAGAGGCGCTCGGTGACC--
-------CACAGCATCTACAAGCTCGACGTCGACGACCTCCACGACGG------CG------------AGCACGCGACCG
TCGCGGACGAGGCGCCGCGCCGCCTCCCGGGACGAGCCCTCCGCCTGGGCGCCTCGTTGGTGGGCACATACAAT---GAC
ACGCACTTCGATGCCGTCGGCAGCAACATCGTCATGACGACTCACTCCAGCACCCTCTCCGTATTGTTCGCCGGCACTCC
GTACTTCCTCACCTTGGTGTACGACACCAAGACGGGGAAGCTGGACGGCGGGAGGCCTCCACACGAGTTCCCGCCCGGCC
CCTTCGACTCCGAGCCCGACGGCGACGTG--CTG-------GAGGCGAGGAAATGGTTCCCGTCTCACCCCTACCAATCC
GCGCC---CGTCGGCGAC---AAGCTGTGGGCGCTAAACGGCGAGGAAGAAAATACGCCAGGCTACTTAGCATACGAGGA
GCCTGACGA--------GGAGTGGGCCTGGAAGATGTGCCGGCGGCCGCTCCCGCTCGACGCCGGCGGCGGCCGCAGCCG
TGTCATGTCGCACGCGGTGCA-CCCGGACGGCCGCACCGTCTTCGCCTCGTCCTCCTTCACCTTCTCGCTCGACACCAGG
CGCTGCCGGTCGGCGCGCCGCGGCGACTGGCGCCTGCCGTTCCACGGCCGCGGGCACTAC--------GACGGCGAGCTG
GGCGCGTGGGTCGGGATCCGGGAGGCCGACGGCACCGACGGCGGGGTCAAGGGAAGTCCCTACCTTTGCTCCTGCGACGT
CCCGGACCTCGCTGGCGTCGACGTCGAGGGGCCGGTGCCGGCGCCGGCGTGGAGGATGTGCGATCAGGAGCTCACGTTCC
TCAAGACGCCGGTGAACCTCGGGTGCCGCGCACTCGTCCACGTCGGGCATGGGCGGTTCTGCCTCGTCGAGGTCGTGCCG
GCGGCGTCGGTCGCCG---AGGGAGCGAAAGCTAGGGGTGGA------------------GAGTGCCTGCTCCATGTGAC
CGTGTTCCGCGCTGAGCATTGCAAGAACGGCGAACTCGTGGTCACGCCGTGCCGA-------------------------
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-------------------------------------------------------------------CCTGGCCGCTCCT
ACCTCGTGCCCAATTGTTCTCTGTGCTTGCCCGGCGCGTTCTGGATT---TGATGATGTCTAGGCCACCATTTTGC----
ACAACAGGATCTTAATGTTCAACTAGTTCCTTCAAACCTTATTTCTTATTTTAAGTCAGTGTGCTTTGTGAAAATTTCTT
TCGACTTTGTGAAAATAATGCAACACAAAGGAGTGTAGTCATTTGTGTGCTCAGCATCACCCTACTGCTTCGTCCTCCAC
GTCTCGTCGGTCCAACATTGTCCTCTCGTAGCACTACATCGCCTTGTTAGGCCTCAGTTTAATCTACATTGAGCATCCAC
ACAAACCTGGCAGGCTCCTCACCCAAAAATGGTACATCGACGGGCTCATTACGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAGCCGTCCCTCCTCCTTTGGTCCAATCACAGATTGCCACTTCAAATTTACCCCGTAAAA
GGCCCGTAACACTCCGTTGATGTAGCATTGCTCCTCCTCACCAGAGCCAACGGAGGATCCTGGCTAAGCATTGTCCTCGT
AGTCCGTGCTAAGCATTGCAAGAACAGCGATCCTGGCGAGGGCCGCCGGTTATGCAGGCGGATCGTGCCTTGACAGTCCT
GTCATGATCACAATCTCAACAGTTGCTGTCGAAGCAGATTTTGAAGCAAGAGTAGGCATATTTTGATGCAGCAAGATCAA
GTTGTTGCAGCTTGGATTTGAGTTTGGAGTCTCAAGGAAACCGCTCTCAAGGAATAAAAACAACTGCACATCAGAGTTCA
GAACGGCTTTTTTGGAG
>chr2B_1
TTTTTTCCTGCAAAGTTTCTTTCGTGCACTAGTGTGGAGCCACGCCCTCGGGATGTTCAAGTAATAACTCCCTTAGTCAA
TGGAAGTGCAGTTTGTTATCTTTACCGAGACCGGTCATGTTGGTAGCAATTGACTCAAATTTTTTGCTTGCTCTTATACG
CTATCGTTTGCACACGTATATATGGAGGTATGGATCCTGGTGATGGTCCTAGAAGCTGACATTTCATACTGAAACTAACA
CAACGATCCTGGTGAAAGAAATAGAAATTACAGTTTTGTCTTGCCTTTTTTTTCTCCAGTTTTCTCTTTCCTATGACATT
CCATTCAGAGAGATTTTATCTCCAGTCGGCAACGGATTGTTAGTTGTTACAATGGGTCTGCATAGAGCTCAGTCGGCTGA
GACTT-------AACTCTCAGCCAAGTGACGTCACCGTAGTTGTG---CTACGAATGGCATGATTGGATGCTGCAGCTGG
TGGTACGGCA---TGCAACGGGGATGTTAGACGCTGTGAGACATGCTGTGAGCAATGACGATGGACACTGCAACTGATGA
GGCTTAGTGCTGCATACAATGATTGTGGAATCTGCGAATGACGGAACAATGTGCTTCGAGCGATGAGGGCGAACACAACA
ACTGGTGACGTGATATGCTGCAACCAGCACCAAT----------------------------------------------
---------------------GTTGCTCACTCTAGCACGAATCTCCGCGCAAAGATCCAATGGTTAAGTCCTAGTCGACC
GAGCTTGAGCAAACCCGTTAGTACAATATTGTCTTCCCTAACATGAG-----------ATAATAAGGAAACTAACAAAAT
CAGCCGGCTCTTGTATA---------------------------------------------------------------
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-------------------------TAGCAAGATTTGTCCAATCCCAACCAAATTATAAAGCGCTTGGTAAC-------T
CAAGACGAATAACGATCGCATCATATTTTTTTTCCTTTCTCGCGGACTATCACGATCTGAATTTCTTCCCACG----ATG
CTGCGCTCGATCATCGCCCGATCTCAGCCCCTTCTCTCCCACCTCCGGTGGCGAGCAGCCGCCGCT------CGGGGCGC
TGCCAAGCCAAGGATCGCCCCATCACGTGCGTAC-------GCCACCGACGACGACACGGTACGGCCCAACGGAGCTGAT
GG---CAGGACGGCGGCGGCGGAGTCCAATCTGCGCCGGCATCTGTACGTGGTGCTCAAGGAGAGGCGCTCGGTGACC--
-------CACAGTATCTACAAGCTCGACGTCGACGACCTCCACGGCGG------CG------------ACGAGCAC----
-----GACGAGGCGCCGCGCCGCCTCCCCGGACCAGCCCTCAGCCTGGGCGCCTCGTTGGTGGGCACATACAATAATGAC
AGGCACTTCGATGCCGTCGGTAGCAGCATCGTCATGACGGCTCACTCCGGCACCCTCTCCGTATTGTTCTGCCGCTCTGC
TTACTTCCTCACCTTGGTGTACGACACCAAGACGGGGAGGCTGGACGGCGGGAGGCCCCCACACGAGTTCCCCCCCGGCC
CCTACGACGTGGAACCCGACGGCGACGTG--CTC-------GAGGCCAGGGAATGGTTCCCGTCTCGTCCCTACCAATCC
GCGCC---CGTCGGCGAC---AAGCTGTGGGCGCTAAACGGAGAGGAGGAAAGCACGCCAGGCTACCTAGCATACGAGGA
GCCTGACGA--------GGAGTGGGTATGGAAGATGTGCCGGTCGCCGCTCCCGCAGGACGCCGGCGGCGGCCACAGCCG
TGTCATGTCGCACGCGGTGCA-CCCCGACGGCCGCACCGTCTTCGCCTCGTCCTCCTTCACCTTCTCGCTCGACACCGAG
GGCTGCCGGTCGGCGCGCCGCGGCGACTGGCGCCTGCCGTTCCATGGCCGCGGGCACTAC--------GACGGCGAGCTG
GGCGCGTGGGTCGGGATCCGGGAGGCCGACGGCACCGATGGCGGGGTCAAGGGGAAACCCTACCTTTGCTCCTGCGACGT
CCCGGACCTCGCTGACGTCGACGTCGAGGGGCCGGTGCCGGCGCCGGCGTGGAGGATGTGCGATCAGGAGCTCACGTTCC
TCGAGACGCCGGTGAACCTCGGGTGCCGCGCGCTCGTCCACGTCGGACATGGGCGGTTCTGCCTCGTCGAGGTCGTGCCG
GCGACG---GCCGGCG---AGGGAGCGGAAGCTAGGGGTGGA------------------AAGTGCCTGCTCCATGTGAC
CATGTTCCGCGCTAAGCATTGCAAGAACGGCGGC--CGTGGTCACGCCGTGCCGGCCTGGCCGCTCCTTTTTTTGGAAAA
GGGGACGTGCCCCAGCCTCTGCATCAGAAAGATGCATACGGCTCATATTATTAAAAGGAAAAACCAGTCGCAAAGTATCG
AAAGGTCATAGTACAAACTATAACAAAATCTGTAAATAAGAAAAGCCCAAAGGCACAACCGGCTGGCAAAACAATAGGAT
CACTACATGTCTATCCTATTACATGACCGCCATCCAAACCGGTTGAAAATATCCCGAGCTACCATCTCCCATCGGGTAGA
CGAAGTAACCAAACGCTCCCTGGCCTCCGTCGGAGTGAGTAGCGACCACATACGGATGAACGCCGTGGCCCTGAAGATAA
CCTGCAAAAAGTGAATGTTTGTTGATCGGTTAAAGACTAAGTCATTTCTGCAATTCCATATTGCCCACAAAAGTGCACAA
ACGCCAACCCGAATGTGTCTTGCAATGTCAGAATCCACCCCATCTAGCCATGTTCCAAATAACATACTAATAGAGGTGGG
CTGACTGATATTAAAAGCAATATGAACCGACCGCCACAGAATCTTAGCCAACGGACAATCGAGAAAGAGGTATTTGATGT
TTTCAGAATGATCACAGAAGCTACATCGAGACGGACCTACCCAATTACGTTTTGCAAGGTTATCCTTAGTCAGAATGACT
TGTTTATGCACAAACCACATAAACACTTTAATACGTAAGGGTACCTTAACTTTCCAAACATGTAAGGCCTGGCCGCTCCT
ACCTCGTGCCCAATTGTTCTCTGTGCTTGCCCGGCGCGTTCTGGGTT---TGATGATGTC--------CATTTTGC----
ACAACAGGATTTTGATTTTATACTAGTTCCTCCAAATCCT-ATTTTTATTT-----------------------------
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-----------------
>chr2D_11
----------CAAAGATTCTTTCGTGCGCTAGTGTGGAGCCGCGCCCTCGGGATGTTCAAGTAATAACTCCCTTAGTCGA
TGGAAGTGCAGTTTGTTATCTTTACTGAGACCGGTCATGTGGGTAGCAATTGACTCGAATTTTTTGCTTGCTCTTATACG
CTATCATTTGCACATGCATATATGGAGGTATGGATCCTGGTGAAAGAAATAGAG--------------------------
---------------------TAGAAATTACAATTTTGTCTTCCCTTTTTTC-CTCCAGTTTTCCCTTTCCTATGACATT
CCATTCAGAGAGATTTTATCTCCAGTCGGCAGCGGATTGTTAGTTGTTACAATATGGGTCT---GCATAGAGCTCAG---
---TACTTAACCAAGTCTCAACTGAGTGACATCACCGTAGTTGTG---CTACGAACGG--------------------GG
TGGTATGACATGTTGCAAACAGGACGGTAGACGCTACGAGACATGCTGTGAGCAATGACGACGGACGCTGCAACCGACGA
GGCTTAGTGCTGCATACAACGATGGCGGAATTTGCGAATGACGGAACAATGTGCTTCGAGCGATGAGGGTGGACACAACA
ACTGGTGACACGACATGCTGCAACCAGCACCGGCAGATGTTGTGACTGGTAAGACGAAGTGGTTCAAGCGGTGGGAAGAA
GTGCTACGAGGGCCATTTGACGTTGCTCACTCTAGCACGAATCTCCATGCAAAGATCCAACGGTTAGTGTA-AGCCGACT
GAGCTTAAGCAAACCCGTTACTA---TATTGTCTTCCCTAAATCCCTAAAATAAGATAATAATAAGGAAACTAACAAAAT
CAGCCGGCTCTAGTACTTTCTCCTTTCCGGTTTATAGGGCTCAATTCAAAAATCTCACCAACCAAGATAAATGGTGAGTG
GTGGAATACTTTTTGTAATTTGCAAAAGCACCCAATTAATACTTTTGTTTTTCTTAAAAAAATATGTTTACCAATGTATT
AATTGCAATGCATGCATGCATAAAGTACATGCATTGGTCATTTTTCTCTTAATACTTGCATGCAATGATTTAATGCACAT
TGAAATCTGAACTTTTGATGGGGAATAACCAAATTGAATTTTATAAGATGGAAAAACTAAGATTTTGAGATAAGCCCTAT
AAACCGAAAAAGAGGGAGTAGTACTTAGCAAGATTCGTCCAATCCCAACCAA-TTATAAAGCGCGTGGTAAC-------T
CAAGACGAATCACGATCGCATC--ATTTTTTTCCCTTTCTCGCGGACTATCACGATCGGAATTTCTTCCCACG----ATG
CTGCGATCGATCATCACCCGATCTCAGCCCCTTCTCTCCCACCTCCGGTGGCGAGCAGCCGCCCCT------CTGGGCGC
TGCCAAGCCAAGGATCCTCCCATCACGTGCGTACAGCGTACGCCACCGACGACGGCACGGCACGGCACAACGGAGCTGAC
GGCAGGACGGCGGCGGCGGCGGAGTCCAATCTGCGCCGGCATCTGTACGTGGTGCTCAAGGAGAGGCGCTCGGTGACC--
-------CACAGTATCTACAAGCTCGACGTCGACGACCTCCACTGCGG------CGGCGGCGGCGACGACGAGCAC----
-----GACGAGGCGCCGCGCCGCCTCCCTGGACCAGCCCTCCGCCTGGGCGTCTCATTGGTCGGTGGA---------GAC
ACGCACTTCGATGCCCTCGGCAGCAGCATCGTCATGACGGCTCACTCTAGCACCCTCTCCGTATTGTTCTGCCGCTCTCC
GTACTTCCTCACATTGGTCTACGACACCAAGACGGGGAAGCTGGACGGCGGGAGGCCTCCACACGAGTTCCCGCCCGGCC
CCTTCGACTCCGAACCCGACGGCGACGTG--CT-------AGAGGCCAGGGAATGGTTCCCGTCTCGTCCCTACCAAGCC
GCACC---CGTCGGCGAC---AAGCTGTGGGCGCTGAACGGAGAGGAGGAAAACACGCCGGGCTACCTAGCATACGAGGA
GCCTGACGA--------GGAGTGGGTCTGGAAGATGTGCCGGTCGCCGCTCCCGCAGGACGCCGGCGGCGGCCACAGCCG
TGTCATGTCGCACGCGGTGCA-CCCCGACGGCCGCACCGTCTTCGCCTCGTCCTCCTTCACCTTCTCGCTCGACACCAAG
CGCTGCCGGTCGGCGCGCCGCGGCGACTGGCGCCTGCCGTTCCATGGCCGCGGGCACTAC--------GACGGCGAGCTG
GGCGCGTGGGTCGGGATCCGGGAGGCCGACGGCACCGACGGCAGGGTCAAGGGAAAACCCTACCTTTGCTCCTGCGACGT
CCCGGACCTCGCTGATGTCGGCGTCGAGGGGCCGGTGCCGGCGCCGGCGTGGAAGATGTGCGGTCAGGAGCTCACGTTCC
TCGAGACACCGGTGAACCTCGGGTGCCGCGCACTCGTCCACGTCGGGCATGGCCGGTTCTGCCTCGTCGAGGTCGTGCCG
GCGACG---GTCGCCG---AGGGAGCGGAAACTAAGGGTGGA------------------AAGTGCCTGCTCCATGTGAC
CGTGTTCCGTGCTGAGCATTGCAAGAACGGCGGCCTCGTGGTCACGCCGTGCCGA-------------------------
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-------------------------------------------------------------------CCTGGCCGCTCCT
ACCTCGTGCCTAATTGTTCTCTGTGTTTGCCCGGCGCGTTCTGGATT---TGATGATGTCTAGACGACCATTTTGCTTGC
ACAACAGGATTTTTATTTTATACTAGTTCCTTCAAATCTT-ATTTTTATTT-----------------------------
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>chr5B_962
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----------------------------------CTTTCTCACAGACT--CGCGA-CTGAATTTCTTCCAACAATTAATG
TTGCGATCCTTCATCGCCCAATCTCAACCCCTTCTCTCCCATCTCCGGTTGCGAGCAGCTGCCGCCCTGGCCCCGGGCGG
TGCAAAGCCATGGATCCTTCCATCACGTGCCTAC-------GCCACGGAGGATGGCACGGCGCGGCGAGACGGAGCTGGC
TGGACCACGGCGGCGGCGGCAGCGGCCAATCTGCGCCGGCATCTGTACGTGGTGCTCAAG-AGATGAACACGAGTCACTC
GGGGGCGCACAGCATCTACAAGCTCGACGTCGACGACCTCCACGGCGCCTGCGCCTCGT---------------------
----------------CCGCCGCCTCCCTGAACCAGCTCTCCGCCTGGGCGTCTCAATGGTGGA---A---------GAC
CCGCACTTCGAAGCCCTCGGCAACAACGTCGTCATCACGGGTCACTCCTATACCATCTCGAGGGACGA---------TGC
CTTCTTCCTCACCGTGGTCTACGACACCAAGACGGCCAAGCTGGACGGTGGGAGTCCTCCATACGG--------------
-------CCCTGAACCCGTCGACGGCGATGACTTCCCTGAACCCGCCAGGGACTGGTGGCCCCGTGGTTCCTGCCAAGCC
GCACCCGTCGGCGGCGAC---AAGCTGTGGGCGCTAGACGCCACC---GACAATACGCCGGGCTACACCTAGCATGCGAG
GAACGCTATCACCAACTGGAGTGGGTCTGGAATATAGGCCAGTCGCCGCTCCCGCTCGATGCCACAGGCTACGACAACCA
TGTCAAATCGCACGCGGTGCACCCCGGATGGCCGCACCATATTTGCCTCGTCCTCCTTCACCTTCTCCCTCGACACCGAG
GGCTGCCAGTCGGCGCGCCGCGGTGACTGGCGCCTACCGTTCCACGGCCAGGGGTACTACACTACTACGACGGTGACTTG
GACGCGTGGATCGGGATCCGAGTGGCCGACGGCGCAGACGGCGGGAGCAAGGGACATCCCTACCTTTGCTCATGTGACGT
CCCGAAACTCGTAGATGC------CGAGGTGCCGGTGCAGGAGCCGGCGCGGAAGATGTGCGATGAGGAGCTCACGTTCC
TCCAGACGCCGGTAAGCTTCGGGTGCCGCACACTTGTCCACACCGGGCGCGGGCAGTTCTGCCTCGTCGAAGTCGTGCCA
GCGATT---GACGCCAAT---GGAGAAGAAGCTACATATTTCACCC---------------AGTGCTTGCTGCATGTGAC
CATGTTCCGTGCAAAGCATTGCAAAGACGGCAACCTCGTAGTCACACCGTGCCGA-------------------------
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-------------------------------------------------------------------CCTGGCCGCTCCT
ACCTCGTGCCCAATTGTTCTCTTCGTTTGCCTGGTGCATTCTGGATT---TGATGATGTCTAGACCACCATTTTGC----
ACAACA---TCTTAATGTTCTAGCAGTTCCTCCAAATATG-TTTCTTATTT-----------------------------
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-----------------
>chr5D_962
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----------------------------------CTTTCTCGCGGACT--CACGATCTGAATTTCTTCCAACA----ATG
TTGCGATCCTTCATCGCCCGATCTCAACCCCTTCTCTCCCACCTCCGGTGGCGAGCA---------------------GC
TGCCAAGCCATGGATCCTTCCATCACGTGCCTAC-------GCCACGGAGGACGGCACGGCACGGCGCGACGGAGCTGAC
CGGACCACGGCGACGGCGGCAGCGGCCAATCTGCGCCGCCATCTGTACGTGGTGCTCAAGGAGATGAACACGAGTCACTC
GGGGGCGCACAGTATCTACAAGCTCGACTTCGACGACCTCCACGGCGCTGGCGACG------------AGAACGCGAGCG
CCATGGACGAGGCGCCCCGCCGCCTACCTGAACCAGCTCTCCGCCTGGGCGTCTCGTTGGTCTCTACA------------
------TTCGAAGCCCTCGGCGACAACATCGTCATCACGGGTCACTCGGACACCATCTCGAGGGACGG---------TGC
CTTCTTCCTCACCTTGGTCTACGACACCAAGAAGGGGAAGCTCGACGGCGGGAGTCCTCCATACGA--------------
-------CCCTGAACCCGTCGACGGCGATGACT-------ACCCGCCAAGGAGTGGTGGCCCCGTGGTTCCTACCAAGCC
GCACC---CGTCGGCGGCGATAAGCTGTGGGCGCTAGACGCCACC---GACAATACGCCGGGCTACCTAGTATCCG-GAG
GAACGCTATCACCATGG---GTGGGTCTGGAATATAGGCCAGTCGCCGCTCCCGCTCGATGCCACCGGCTACAACAACCG
TGTCAAATCGCACGCGGTGCA-CCCGGATGGCCGCACCATCTTCGCCACGTCATCCTTCACCTTCTCCCTCGACACCGAG
GGCTGCCGGTCAGCACGCCGCGGTGACTGGCACCTGCCGTTCCACGGCCGGGGTTACTACA--------ACGGCGACTTG
GACGCGTGGGTCGGGATCCGAGTGGCCGACGGCGCAGATGGCGGGAGCAAGGGACATCCCTACCTCTGCTCATGTGACGT
CCCGAAACTCGTAGATGC------CGAGGGGCCGGTGCAGGAGCCGGCATGGAAGATGTGCGACGAGGAGCTCACGTTCC
TCAAGACGCCGGTGAGCCTCGGGAGCCGCACACTCATCCACACCGGGCGCGGGCGGTTCTGCCTCGTCGAGGTCGTGCCA
GCGACG---GTTGCCAAGGAGGGAGGAGAGCCTAGTTGTCCCACCGACGACGAGAGCATCGAGTGCCTGCTCCATGTGAC
CATGTTCCGTGCTAAGCATTGCAAAAACAGCGACCTCGTGGTCACACCGTGCCGA-------------------------
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-------------------------------------------------------------------CGTGGCCGCTCCT
AC------------------------------------------------------------------------------
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-----------------
>chr5B_1729
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--------------------------------------------------------------------------CAACCA
TGTCAAATCGCACGCGGTGCA-CCCGGATGGCCGCACCATATTCGCCTCGTCCTCCTTCACCTTCTCCCTCGACGCTGAC
GGCTGCTAGTCGGCACGCCGCGGTGACTGGCACCTGCCCTTCCACAGCCGGGGTTACTAC--------GACGGCGACTTG
GACGCGTGGGTTGGGATCCGAGTGGCCGATGGGGCAGACGGCCGGAGCAAGGGACATCCCTACCTCTGCTCATGTGACGT
CCCGAAACTCGTAGATGC------CGAGGGGCCGGTGCAGGAGCCGGCGCGGAAGATGTGCGACGAGGAGCTCACGTCCC
TCAAGACGCCGGTAAGCCCTGGGTGCCGCACACTCGTCCACACTGGGCGCGGGCGGTTCTGCGTCGTCGACGTCGTGCCG
GCGACG---GTTGCCAAGCAGGGAGCAGAACCTAGGTGTTCCACCGACGACAA---CATCGAGTACCTGCTCCATGTGAC
CATGTTCCGTGCTAAGCATTGCAAAAACGGTGACCTCGTCGTCACACCGTGCCGA-------------------------
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-------------------------------------------------------------------CCTGGCCGCTCCT
ACCTCGTTCCTAATTGTTCAGTTTGTTTGCCGGGTGCGTTTTGGATGTGATGATGATGTCGAGACGACCATTTTGC----
ACAACA---TCTTAATTTTCTAGCAGTTCCT-------------------------------------------------
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-----------------
>SNPs
------------------S---------------------S-S-------S-----------------------------
--------------------------------------------------------------------------------
------------------------S----------S--------------------------------S-----S--S--
--------------------------------------------------------------------------------
---------------------------------S--S----------------------------------S-----S--
------------------------------------S--------SSS---S-----S-----------------SSS--
----------S-S-----------S------------------------------S------------S-S---S-----
----------------------------------S-------S-------------------------------------
-S--------------------S----S------S----S--S-----S-S---S------S-S---------------S
-----------S-SS----------S---S------------------S-------------------S-----------
--------------------------S-----------------------------------------------------
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----------------------------------------------------------S-------------SSSSSSS-
------------------------S-------------------------------------------------------
-----------------------------------S--------------------------------------------
-----------------------S--------------------------------------------------------
-----------------------------------S-----------------S--------------------------
--------------------------------------------S-------------------------S------S--
S-SS------------------------S----S----------------------------------------------
---------------------------------------S-----------------------------SS-S--S----
--------------------------------------------------------------------------------
-------------S-------------------S------------S---S---------------SS------------
-----------------------------------------------S------------------S-------------
-------------------------S----------------SS-----------------------------S------
------------------------------------------------------------------------------S-
--------------------------------------------------------------------------------
-------------------------------------------------------S------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
---S--SSS------------------S----------------------------------------------------
---------------------------------S----------------------------------------------
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---------------------------------------------------------------S----------------
--------------------S---------------S---S----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSS
>forward_491
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TGCAATCGG
TGGTACGACAA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
>reverse_3654
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GCATCACCCTACTGCTTCGT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------
