>input_sequence_55030
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----------------------------ATGGCAGCTCAGACTGGAGCAGCAGTCCTCCTCGCCAGCCTCCTCCTTGCTC
TTGCAGCCATCGCCAGCAGCAACACTGA----------------------------------------------------
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------------------------------AGGTACATGCATACATGCTAATTACTTTGCGTCT-CCCAAGTGACTTCCT
TGTTGCTCA-----------------------------------------------------------------------
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-------------------------------------------------------AAGGTTTTGTGCTGCT------GAT
TTACACACAATTTTTGTTGGTATCCGGAGGCG------------------------------------------------
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--------------------------ACATACTTTACGCGCAAAGGCAGGCGTGGAATGACCCGAACGGTGTGCTGCAGA
GCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCAACAACGAGAACTCCGTCGCCCGAGTGTAT
ATATGCCACCCATGTTTTTCTTCACTCCTCCTTGTTCTGAACTGAAGGCCGAAACTGAATTGATCATGGTTCTTATCGAC
ATTCAGAACCTTGTGACTTGGACAAAAGTTCCACTACCTGAGTTCTTCCTAACTGTGCGGGGATTTGGGGAATGCAGGCA
TCTCAGGCCCCCTCATTCCTAAACTGGGCCAACTGAAGAGCCTTCGATACATGTAAGTTCTACTGCAACTTGCTGCGGAG
TGCAGACCTGTCAAATTACACTCAAAGTTTCCCTACAGTACAGAATGAC----ATTCTCATCTTCACAGGGAGCTGTATG
AGAACAAAATGAGTGGACCAATACCGGCGACGCTGGGAAACCTGAAGAGACTGATCAGCCTTGATCTTTACAGCAACCAT
CTCACAAGCACGATACCGGCCTCGCTCGGGAACATAGGGTCGCTGCGTTTCCTGTATGAGTCCTGCTGCAGCAAGCTCCT
TTTCTGATTACGAGATGCTACGACACCTATCGTCTCCAAGTGCTGAAAACAATCTGTTGGTGTCTCTCTGCAGAAGGATC
CATCGGAACAAGCTTGCAGGAGGTATACCGGCGTCGTTGGGTTGTCTGACGAAGCTTCTCAGGTTGGAGCTTCAGGAGAA
CATGCTGACCGGCACGGTGCCGCCGGAGGTCCTCTCTCTTGTTCTTGTCGGAGAATTGACTAAGCTGTGAGTAGTAGGAG
TACATACAGTT-GGTTT--CACA---CCACAATTTGCATCTGTTTTCCTCCTTCCTTTCCCAGTGATT----GTTGACGC
GATATCTTTTATCTTC----ACACAGTAATGTTGCGGAAAACAATCTCACCGGCACTGTCAGATCATCTAAACAAAAAGG
TGGGA-TGCATATTATTC--------ATGTGAC----------------ATGTATAGCTAGAGGTTTGGTGCTTTGTGCT
CACACGAATTTCAG-ATTGGCATCACTTGCAGTGACTACGGTCATCCAAGACACGTTCAACTGA----------------
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>chr3A_1_TraesCS3A01G477600
CGCAATCTGTTTCTCTCTTTTCTCATGCTACAAGGAGTGGACG---AATCCATTTTATAGGCTGGCGTCTCTCCACCATC
ACTAAT-AGC----------------------------------------------------------------------
TATATGAGAGTGAACTATATGCACCAGAATTTTAGTAACGATAGGATACCAAGAATCCTCAAATCCAACACATAATACCA
AGAATCTTAAAATCGTCTCTGCCACATATGTTCTGAGTTTCTACA-ACAAGAACTGTGCGCATGCATGCACCATTGGAAC
CTACTACAGAAATCTTTCAGTTGCTCTGAGATCAAGT-----AGCCAGCAGTGTCTTCTATCACACAAAAGTTAACCT--
--AAGGATAAGCATTGACTACATCACAACACAGATGATAATT-GC-TTTTACTACAAAGTTGATAACTGACTCATG----
TATTAGGACCAAGACAGACCAAGGGCTCTCATTTTGCTAATGTTGCGCTGTGAAATCTGCCACTACGAAATGCTGAGAAG
ACCTCCTCGCAAAAGAAAAAGG-TTGAGAAAAGAGCATGCGTGTGCGAGAAGATTGCTTCGGGGCTCACAATTGGCGTCA
AGGTTTAATCACATTCAAAGCTCTTGACTTGACTCGCGAGCACCTCTACTAACCATCAGGACAATGACTGCAGGTTCACT
GACAAAAAATGAGTAGTCCCTACTTCAAGAGTTACTATTTTTACTCCAGACCCTGGTTTGAGAGTAACTTCTCGTCCA--
--------------------------------------------------------------------------------
--------------------------------------CCTGCCACGTGTCACTTCAACTATAATAAAAAAAA-------
--GACCTGATCTAAATTTTCATTTATAGTTGAAGTACCAAGATTTTGTGTTTCTTTATACGAAGAACATGAGCCGCGACC
GTTTGCAACAAAATTCTTCCGTTAATACGGTAAGCCAGTCAATAGAGGAGAAGAGCCAAAGGCTGACCCAGAAAGTGAAA
GCTTCTGGTTACCCAGTGGAATTGTTGCATAT--------AAAGGACCCGTCTCTCCTCTTAACGTTTCAGTGTGCCCGC
CCAATACACCTGAGGTTTCCTTCCAGCAATGGCAGCTCAGACTGGAGCAGCAGTCCTCCTCGCCAGCCTCCTCCTTGCTC
TTGCAGCCATCGCCAGCAGCAACACTGA----------------------------------------------------
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------------------------------AGGTACATGCATACATGCTAATTACTTTGCGTCT-CCCAAGTGACTTCCT
TGTTGCTCA-----------------------------------------------------------------------
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-------------------------------------------------------AAGGTTTTGTGCTGCT------GAT
TTACACACAATTTTTGTTGGTATCCGGAGGCG------------------------------------------------
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--------------------------ACATACTTTACGCGCAAAGGCAGGCGTGGAATGACCCGAACGGTGTGCTGCAGA
GCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCAACAACGAGAACTCCGTCGCCCGAGTGTAT
ATATGCCACCCATGTTTTTCTTCACTCCTCCTTGTTCTGAACTGAAGGCCGAAACTGAATTGATCATGGTTCTTATCGAC
ATTCAGAACCTTGTGACTTGGACAAAAGTTCCACTACCTGAGTTCTTCCTAACTGTGCGGGGATTTGGGGAATGCAGGCA
TCTCAGGCCCCCTCATTCCTAAACTGGGCCAACTGAAGAGCCTTCGATACATGTAAGTTCTACTGCAACTTGCTGCGGAG
TGCAGACCTGTCAAATTACACTCAAAGTTTCCCTACAGTACAGAATGAC----ATTCTCATCTTCACAGGGAGCTGTATG
AGAACAAAATGAGTGGACCAATACCGGCGACGCTGGGAAACCTGAAGAGACTGATCAGCCTTGATCTTTACAGCAACCAT
CTCACAAGCACGATACCGGCCTCGCTCGGGAACATAGGGTCGCTGCGTTTCCTGTATGAGTCCTGCTGCAGCAAGCTCCT
TTTCTGATTACGAGATGCTACGACACCTATCGTCTCCAAGTGCTGAAAACAATCTGTTGGTGTCTCTCTGCAGAAGGATC
CATCGGAACAAGCTTGCAGGAGGTATACCGGCGTCGTTGGGTTGTCTGACGAAGCTTCTCAGGTTGGAGCTTCAGGAGAA
CATGCTGACCGGCACGGTGCCGCCGGAGGTCCTCTCTCTTGTTCTTGTCGGAGAATTGACTAAGCTGTGAGTAGTAGGAG
TACATACAGTT-GGTTT--CACA---CCACAATTTGCATCTGTTTTCCTCCTTCCTTTCCCAGTGATT----GTTGACGC
GATATCTTTTATCTTC----ACACAGTAATGTTGCGGAAAACAATCTCACCGGCACTGTCAGATCATCTAAACAAAAAGG
TGGGA-TGCATATTATTC--------ATGTGAC----------------ATGTATAGCTAGAGGTTTGGTGCTTTGTGCT
CACACGAATTTCAG-ATTGGCATCACTTGCAGTGACTACGGTCATCCAAGACACGTTCAACTGAAGACTAGAAGCTGAGC
AGCA-TGGCAAACTGAACTTTCGTAAGAATAAATTGAATGGTTTTC---CGTTCTGAAACTGCCGACAGTAGTTG-----
---------------CATGCAGCCTGGGCTTTTGTAGACCTCTGTTCCGTTAAGAGTCAGGGCTTACCTCTCCTTCAAGA
AACAATAGAAGAAATACATAGTTGAGTCCATTGTTATTAGCAGGAAATTCAAAATAATGATTC-----------------
---------ATCCTTGTGGTTTATCTTAGTCACATCCATACTTCTACATCCGTTTGAGCGGCAACTAATTCCGGACGGAG
GGAGTAGCACATGGTGCTTCAGGAATCTTGAAGC---------TCTGATGCTCAGCAAAGATCTTCAGTGTGCACGACAG
TCGCCAAGGATGATGAGTGAAACACTCACCCGTTTCACTCGCCTGAGCAACCATACATGAAGA-----------------
AGAGTACATAGCACACAGATT--TATCTCAAATATAATGACACATAGACATAGCTGTGTCTACCAAATAGCACGTCCAAA
TGTACTGATAGCATCACAACTTTGGTTCAGAGAAATAAAGGATAGCTGCTGCTGCAGCAAACAATGACCCACAAACTTAA
CAGACTAGTTCAAGACTCACATCAATGACACAAACAATAGCTTATAGCTATGATTTATTCTTAAATAATAAAGATGGTGC
TAAATAGGGCAGTCTTCCGATAGAAATCAGAAATGCAGCCTTCCTCCATATCACGCCGACAAGACTTCATGCTTCATCAC
ACAGTAACGGTGATCACCCCTGTTCTCAAGTCTTACTCTTCATCCCCCTAAAGTAACAACATCGGATCAAACATTAGCAA
AGGGAACACAATTAAAGGCCTTCCTTTGTATATAAGAGCAC-------AAGAGTAGCTGGCACGATTCGGTACAAACCTT
AAGTTCTTTTCCTCGATGAGCTTGTGGATGCCTCGGCCTCCTGCCGTGGCGTGTTCCGGTTCCGGGCCAGCACAGGCTCC
TCCCGGACCGGATTCACTGGAGTTTCAAT
>chr3B_1
CGCACTCTGTTTCTCTCTTTTCTCATTCTACAAGGAGGAGTAGACCAATCCATTTTATAGGCTGATGTCTCTCCCCCATC
ACTAATTAGC----------------------------------------------------------------------
TATATGAGAGTAAACTATATGCACCAGAATTTCAGTAACGATAGGATTACAAGAATCCTCAAATCTAACACATAATACCA
AGAATCCTAAAATCGTCTCTGCCACATATGTTCTGAGTTTCTACA-GCAAGAACTGGGCGCATGCATGCACCATTGGAAG
CTACTACAGAAATCTTTCAGTTGCTTTGACATCAAGTAGCT-----AGCAGTGTCTTCTACCACACAAAAGTTAACCT--
--GAGGATAAGCATTGACCACATCACAACACAGATGAA---TTGC-TTTCACTACAAAGTTGATAATTCACTCATG----
TATTAGGACCAAGACAGACCAAGCGCACTCATTTTGCTGATGTGGCGCCATGAAATATGCCACTAAGGCCCAGTTCTTTT
GAGCAAACTGTGGAGAATTTCAGTCTGGAAAATCTGGACCCA--------------------------------------
----------------AAAGAACTCGACTTGACTTGCAAAATCTGGAGAGGATTCTCTAGAATCCTAGTGCAACCAAAAG
CTCCCAAAAAGCTTGATTTTCCTAGACTCTCAGGATTTTGGTAAGTCCCA------------------------------
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----------------------------------------------------------CCAAAGAAAATGTTTCAAAATA
GAAATGTACCCCTATCCCATCGAGAAATTACACCCGGAATGCCACTGAGCCCATCCACGCGCTGGACCGAGAAAACGAGC
GAGCGAGCAGTCTTCGCTCGACCCCAGTTCGCATCGCGGGAAAGGACTCCCAGCCACAGCGAGGGCTAGGGTTGCCGCGC
CGCCGCCGGAC-------------------------------------------CCACCTCGCCGGCCAGGCCCTTGCCG
CCGGCCGCCTTATCTCCCTCCGCCACCCCTCTTCCTTCGCCGCTCATCCACCCCTCTGCCCTATCTCCGCCCACAACCAC
CAGCGCTGCACCCGGACGGCTACCCGACGGGCTTCAGCTGCAACTGGACGGCCACCGGCGCTGCACCTCGATGGCCACGA
ACAACCCACGCGAGGAGCAGGCCACACCCATGGCGAGATCCTCTTTCCGATCTCTCTGTTCTTCATTTTTCTTATGCTAA
ATTGGATAGCTAGGCTGATTTATGTTGCATAGGTAGATGGATTGATGCTTGAATTTGTTAGGTAGATGGATGGATTGATT
GCTGATGCTGGTATATGGATGGATGGTGCTAATTTGTGTGTGTGTGTGTGCGCGCGCGCGCGCGTGCGTGTACTACTGTC
AATGCTACTATGGTATTGGTGTTATCGGTGCAATTTTTATGGATCACGGGTACATGTCAGACAACTTATAATGTTGCAGA
CCGGTTTGCACATAGTTGTTCTATCGTTAACAAAAAATTCCACGAGGTTTTGTAGTGTGTAGATCGCATGGCTGGTGATT
ACATTAGACCAATTGATCCAACTTTCTCCGAACCACACCCAGTACTTACAAAGACAAAGTTTTGGCCTCAT------TTT
CAACATACTA--TTGGAGCCATTGATGGAACACACATTAAGATGACTGTGCCCAAGGAGTTGGAGCCCCAACACAGGAAT
AGGAAAGGTTATACAAGTGAAAATGTTATGGCAGTGTGTGATTTTGATATGAGGTTCACGTTTGTTGTTCCCGGATGGCC
CGGATCTGTTCATGACACACGTGTATGGAGCGATGCCATAGTTCGTTATGATCACTTTCCACAACCCCCCATAGGTAATC
TCTCACATGTATCCATATTGTTATATACATCCTTTACGCACAAAGGCAGGCGTGGAATGACCCCAATGACGTGCTGCAGA
GTTGGGATCCGACCCTTGACAGTCCCTGCTTTTGGTTTCATGTCTGCTGCAACAACACCGCCCTCACCCTAGTG------
-TATGCCACCCTTGTTCTTCTTTTCTCCTCCTGGTTCTGAACTGAAGGTCCAAACTGATTTCATCATAGTTCTTTTCAAC
ATTCAGAAACTTTTAACTTAGACAAGAATTCCACTACG-----------TCACTGTGCAGAGATTTGGGGAATGCAGGCA
TCTCAGGACCCCTGATTCCTGAACTGGGCCAACTGAAGAGCCTTCGGTACCTGTAAGTTCTACTGCAACTTGCTGCAGAG
TGCAGACCTGCCAAATTACACTCGAAGTTTCC------TACAGAATGAC----CTTCTCATCTTCATAGGGAGTTGTATG
CATAGTTTTAAATAGCCGGCTATAGCCCCGCTATAGCCTTTTTAGCAGGGTGCCGCTAAATGGTCTCATGTACAAATAGC
CCGCTATAGCTCCGTTATAGCTGATTTGGAGGTCTGCCGCTATTT-----------------------------------
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--------------------------------------------------------------------------GGAGAA
CATGCTGACCGGCACGGTGCCGCTGGAGGTCCTCTCTCTTGTTCTTGTCGGAGACATGACTAAGCTGTGAGTAGTA----
--CATACAGTT-CGTTTCACACA---GCACAAATTGCATTTAGTTTCTTCC----TTCCCCAATGACTTCCCATTGACGC
GATATTTTTTATCATT----GCACAGAAATGTCATGAAAAATAATCTAGCCGGCACTGCCAGATCATCTAAAACAAGAGG
TTGGGATGCATTTTATTT--------TTGTGTGTGAGTGTGTGACATGTATATATAGCTATAGGTTTTAATC--TGTGCT
CACAAGAATTTTCCAACTGGCATCTTTTGTAGTGGCTACGGTCATCCAGGACACGCTCGAGTGAAGACTACAAGTTAAGC
AGTAGTGACAACCTCAACTTGTGCAAAAATAAACTGAATGATGATTGCTCTTTCTGAAACTGCTGGTAGTAGCTG-----
---------------CATGC------------------------------------------------------------
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>chrUn_2
-GCACTCTGTTTCTCTCTTTTCTCATGCTACAAGGAGGAGGCGACCAACCCATTTTATAGGCTGATGTCTCTCCCCCATC
ACTAATTAGCTACTCCCTCCATAAAGAAATATATATTTCTTTAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAG
TATGTGAGAGTAAACTCGATGCACCAGGATTGCAGTAACGATAGGATACCAAGAGTCCTCAAATCTAACACATAATACAA
AGAATTCTAAAATCGTCTTCGCCACATATATTCTGAGTTTTTGACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAG
CTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGTAGCCAAGCCAGCAGTGTCTTCTATGACACAAAAGTTAACCT--
--AAGGATAAGCATTGACTACATCACAACACAGATGATAATTTGC-TTTTACTAGAAAGTTGATAATTGACTAATGTACG
TATTAGGACCAAGATAGACCAAGCGCACTCATTTTGCTGATGTTGCGTTGTGAAATCTGCCACTACGAAATGCTGAGAAG
ACCTCCTTGCAAAAAAAAAAAGATTGAGAAAAGAGCATGCTTGTGCGAGAAGATTGCTTCGGCGGTCAACATTGGCGTCA
AGGTTTAATCATATTTAAAGCTCTTGACTTGACTCGTGAGCACCTCTTGG-------AGGACAATGACTG---GTTCACT
GACAAAAAATGAGTAGTTCCTACTTGAAGAGTTTTT-TTTTTACTCCAGACCCTGGTTTGAGAGTAACTTCTCGTCGACA
GAATGCGCCTGCCACGTGTTTCTCAGTGAGCCGCGACCGTTTATAATTGGGACGTGTAACTGCCTGCCATGTGTTTGTCA
GTGAGCCGCGACT-CGACAGTATTTGGCCTGGTCTATGCCTGCCACGTGTCACTTCAACTATAATAGGAAATTTAGATCA
TTGACCTGATCTAAATTTCCATTTATAGCTGAAGTACCAAAATTTTGTGTTTTTTTATCCAAAGAACATGAGCCGTGACC
GTTTGCAACAAAATTCTTCCGTTAACACGGTAAGCCAATCAATAAAAGAGAAGAGCCAAAGACTGACCCAGAAAGTGAAA
GCTTCTGATTACCCAGTGAAATTGTTGCATAT--------AAAGGACTCATCTCTCCTC-TAGCGTTTCAGTGTGCCCAC
CCAATACACCTTAGTTTTCCTTCCAGCAATGGGAGCTCAGACTGGAGCAACACTCCTCCTCGCCAGCCTCCTCCTTGCTC
TTGCGGCCATCACCAGCAGCAACACTGA----------------------------------------------------
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------------------------------AGGTACATACATACATACACAG------------------GTGACTTCCT
TGTTGCTCA-----------------------------------------------------------------------
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-------------------------------------------------------AAGGTTTTGTGCTGCT------GAT
TTACACACAA--TTTGTTGGTATCCGGAGGCG------------------------------------------------
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--------------------------ACATACTTTACGCGCAAAGGCAGGCGTGGAATGACCCCAACGGCGTGCTACAGA
GCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCAACAACGAAAACTCCGTCGTCCGAGTGTAT
ATATGCCACCCATGTTTTTCTTTACTCCTCCTTGTTCTGAACTGAAGGCCGAAACTGATTTGATCGTAGTTCTTTTCGAT
AGTCAGAACCTTGTGACTTGGACAAAAGTTGCACTACCTGAGTTGTTCCTTACTATGCAGGGATTTGGGGAATGCAGGCA
TCTCAGGCCCCCTCATTCCTGAACTGGGCCAACTGAAGAGCCTTCGGTACCTGTAAGTTCTACTGCAACTTGCTGCAGAG
TGCAGACCTGTAGAATTACACTCAAAGTTTCCCTACAGTACAGAATGAC----ATTCTCATCTTCACAGGGAGCTGTATG
AGAACAAAATGAGTGGGCGAATACCAGCGACCCTGGGAAACCTGAGGAGACTGATCAGCCTTGATCTTTACAGCAACCAT
CTCACTGGGGCGATACCGGGCTCGCTCGGGAACATCGCGTCGCTGTGTTTCCTGTATGAGTCCTGCTACAACAAGCTCTT
TTTCAGATGGCGAGATGCTAAGACACCTATCATCTCCAACTGCTAAAAATAACCTGTTGGTGTCTCTCTGCAGAAGGATC
CATCGGAACAAGCTTGCAGGAGGTATACCAGCGTCGCTGGGCCGCCTGACAAAGCTTCTCAGGTTGGAGCTTCAGGAGAA
CATGCTGACCGGCACGGTGCCGCTGGAGGTCCTGTCTCTTGTTCTTGTCGGAGACTTGACTAAGCTGTGAGTAGTA----
--CATACAGTT-CGTTTCACACA---CCACAATTTGCATCTGTTTTCTTCCTTCCTTTCCCAGTGATGTCCGGTTGACGC
GATATCTTCTATCTTCGTTCACGCAGAGATGTTGTGGAAAACAATCTCAGCGGCACTGTCAGATCATGTAAACAAAGAGG
TAGGG-TGCATTTTATTTGTATACTTGTGT--------------------TGTACAGCTAGAGGTTTGGTGCTTTGTGCT
CACAAGAATTTCCCAATCGGC-------------------GTCATCCAGTACACGCTCAAGTGAAAC-------------
----------------------------------------TTTTTC---CGTTCTGTAACTGATGGCAATAAAACTGTTT
CAG-GGCAAACTGAACAAGCAGCCTGAGCTGTTGTAGACCTTTGTTCCGTTAAGAAACAAAAGGAAGAAATAAGGAAT--
-----------------------------------------------------------AATCCTTCTGTGCACATTTAC
CAGAAAACAATCCCTCTGGTTTATCTTAGTCACAGACA------------------------------------------
----TAGCACATGGTGCTTCAGGAATCTAGAACCAAAACTAATTCTGATGCTCAGTAAAAATCTTTAGCATGCACTA--T
GCCTGTGACGT--------------------------------TGAGCAAACG-------------ACAAACATGTGAAT
AGAACACATAGCACACAGACTTATATCTCAAATATAATGACACATAGACATAGCTGTGTCTATCCAATAGCACGTTCAAA
TGTAGTTTAAGCATCACAACATTGGTTCAGAGAAATAAAGGATGGCTGCAGCTGCAGC-AACAACGACCCACAAACTTAA
CAGACTAGTTCAAGACTCAAATCGATTACACGGACAATAGCTTATAGCTATGATTTATTCTGATAAAATAAAGATAGTGC
TAAATAGGACAGTCTTCTGATAGAGATCAGAAATGCAGCCTTCCTCCATATCACGCCGACAAGACTTCATGCTTCATCAC
ACAGTAACGGTGATCACCCCTGTTCTCAAGTCTTACTCTTCATCCCCCTAAAGTAACAACATCGAATCAAACATTAGCAA
CGCGAACAGAATACAAGGCATTCCTTTGTTTATATAGGAAAAGAAAAGAACATGAGCTTGCGTGCTTTGGTGCAAACCTT
AAGTTGTTTTCCTCGATGAGCTTGTGGATGCCTCGGCCTCCTGCCGCGGCGCGTTCCGTTTCCGG-CCAGCACAGGCTCC
TCCCGGACCGGATTCACTGGAGTTTCAAT
>chrUn_2
-GCACTCTGTTTCTCTCTTTTCTCATGCTACAAGGAGGAGGCGACCAACCCATTTTATAGGCTGATGTCTCTCCCCCATC
ACTAATTAGCTACTCCCTCCATAAAGAAATATATATTTCTTTAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAG
TATGTGAGAGTAAACTCGATGCACCAGGATTGCAGTAACGATAGGATACCAAGAGTCCTCAAATCTAACACATAATACAA
AGAATTCTAAAATCGTCTTCGCCACATATATTCTGAGTTTTTGACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAG
CTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGTAGCCAAGCCAGCAGTGTCTTCTATGACACAAAAGTTAACCT--
--AAGGATAAGCATTGACTACATCACAACACAGATGATAATTTGC-TTTTACTAGAAAGTTGATAATTGACTAATGTACG
TATTAGGACCAAGATAGACCAAGCGCACTCATTTTGCTGATGTTGCGTTGTGAAATCTGCCACTACGAAATGCTGAGAAG
ACCTCCT-------------------------------------------------------------------------
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>chrUn_2
-GCACTCTGTTTCTCTCTTTTCTCATGCTACAAGGAGGAGGCGACCAACCCATTTTATAGGCTGATGTCTCTCCCCCATC
ACTAATTAGCTACTCCCTCCATAAAGAAATATATATTTCTTTAGTGATCTAAACGCTCTTATATTTCTTTACGGAGGGAG
TATGTGAGAGTAAACTCGATGCACCAGGATTGCAGTAACGATAGGATACCAAGAGTCCTCAAATCTAACACATAATACAA
AGAATTCTAAAATCGTCTTCGCCACATATATTCTGAGTTTTTGACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAG
CTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGTAGCCAAGCCAGCAGTGTCTTCTATGACACAAAAGTTAACCT--
--AAGGATAAGCATTGACTACATCACAACACAGATGATAATTTGC-TTTTACTAGAAAGTTGATAATTGACTAATGTACG
TATTAGGACCAAGATAGACCAAGCGCACTCATTTTGCTGATGTTGCGTTGTGAAATCTGCCACTACGAAATGCTGAGAAG
ACCTCCT-------------------------------------------------------------------------
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>chr3B_2
-GCACTCTGTTTCTCTCTTTTCTCATGCTACAAGGAGGAGGAGACCAATCCATTTTATAGGCTGATATCTCTCCCCCATC
ACTAATTAGCTACTCCCTTCGTAAAGAAATATATATTTCTTTAATGATCTAAACGCTCTTATATTTCTTTACAGAGGGAG
TGTGTGAGAGTAAACTCTATGCACCAGAAATTCAGTAACGATAGGATACCAAGAGTCCTCAAATCTAACACATAATACAA
GGAATACTAAAATCGTCTTCGCCACACATATTCTGAGTTTTTGACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAG
CTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGTAGCCAAGCCAGCAGTGTCTTC--------AAGAGTTAACCT--
--AAGGATAAGCATTGACTACATCACAACACAGGTGATAATT-GCTTTTTACTACAAAGTTGATAATTGACTCATGTACG
TATTAGGACCAAGACAGACCAAGCGCACTCATTTTGCTGATGTGGCGGTGTGAAATCTGGCACTACGAAATGCTGAGAAG
ACCTCCTTGCAAAAAAAAAAG-----------------------------------------------------------
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>chr3D_102
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---------------TATATGCACCCGAATTTCAGTAACGATAGGATACCAAGAATTCTCAAATCTAACACATAATACCA
AGAATCCTAAAATCGTCTTCGCCACATATATTCTGAGTTTTTGACTGCAAGAACTGGGCGCATGCATGCACCATTGGAAA
CTACTACAGAAATCTTTCAGTTGCTTTGACGTCAAGC-----AGCCAGCAGTGTCTTCTATCACACAAAAGTTAACCTAA
TTAAGGATAAGCATTGACTACATCACAAGACAGATGATAATT-GC-TTTTACTACAAAGTTGATAATTGACTAATGTA--
--TTAGGACCAAGACAGACCAAGGGCACTCATTTTGCTGATGTTGCGCTGTGAAATCTGCCACTACGAAATGCTGAGAAG
ACCTCCTCGCAAAAAAGAAAAGGTTGAGAAAAGAGCATGCGTGTGCGAGAAGATTGCTTCGGGGCTCAAAATTGGCGTCA
AGGTTTAATCACATTCAAAGCTCTTGACTTGACTCGTGAGCACCTCTACAAACCATCAGGACAATGACTG---GTTCACT
GACAAAAAATGAGTAGTTCCTACTTCAAGAG-TTTT-TTTTTACTCCAGACCCTGGTTTGAGAGTAACTTCTCGTCGACA
GAATGCGCCAGCCACGTGTTTGACA-TGAGCCGCGACCGTTTATAATTGTAACGTGTCACCGCCTGCCATGTGTTTGTCA
GTGAGCCGCGACCGCGACAGTATTTGGCCTGGTCTATGCCTGCCACATGTCATTTCAACTATAATTGGAAATTTAGATCA
TTGACCTGATCTAAATTTCCATTTATAGTTGAAGTACCAAAATTTTGTGTTCTTTTATACAAAGAACATGAGCCGCGGCC
GTTTGCAACAAAATTCTTCCGTTAACACGGTAAGCCGGTCAATAGAAGAGAAGAGCCAAAGGCTGACCCAGAAAGTGAAA
GCTTCTGATTACCCAGTGGAATTGTTGCATAT--------AAAGGACCCGTCTCTCCTC-TAGCGTTTCAGTGTGCCCAC
CCAATACACCTCAGGTTTCCTTCCAGCAATGTCAGCTCAGACTGGAGCAGCA---------------CTCCTCCTTGCTC
TCGCGGCCATCGCCAGCAGCAACACTGA----------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------AGGTACATACATACATGCTAATTACTTTTCGTCTCCCCAAGTGACTTCCT
TGTTGCTCA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------------------------------------------------AAGGTTTTGTGCTGCTCCTGCTGAT
TTACACACAA--TTTGTTGGTATCCGGAGGCG------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------ACATACTTTACGCGCAAAGGCAGGCGTGGAATGACCCGAACGGTGTGCTGCAGA
GCTGGGATCCGACCCTTGCCAATCCCTGCTATTGGTTTCATGTCAGCTGCAACAACGAAAACTCCGTCGTCCGAGTGTAT
TTATGCCACCCATGTTTTTCTTCACTCCTCCTTGTTCTGAACTCAAGGCCGAAACTGATTTGATCGTAGTTCTTTTCGAC
ATTCAGAACCTTGTGACTTGGACAAAAGTTCCACTACCTGAGTTCTTCCTTACTGTGCAGGGATTTGGGGAATGCGGGCA
TCTCAGGCCCCCTCATTCCTGAACTGGGCCAACTGAAGAGCCTTCGATACCTGTAAGTTGTACTGCAACTTGCTGCAGAG
TGCAGACGTGTCGAATTACACTCAAAGTTTCCCTACAGTACAGAATGAC----ATTCTCATCTTCACAGGGAGCTGTATG
AGAACAAAATGAGTGGGCCAATACCATCTACCCTGGGAAACCTGAGGAGACTGATCAGCCTTGATCTCTACAGCAACCAT
CTCACTGGCGCGATACCGGCATCGCTTGGGAACATCGCGTCGCTGCGTTTCCTGTATGAGTCCTGCTACAACAAGCTCTT
TTTCAGACGGCGAGATGCTAAGACACCTATCATCTCCAACTGCTGAAAATAACCTGTTGGTGTCTCTCTGCAGAAGGATC
CATCGGAACAAGCTTGCAGGAGGTATACCGGCGTCGCTGGGTCGTCTGACGAAGATTGTCAGGTTGGAGCTTCAGGAGAA
CTTGCTGACCGGCACGGTGCCGCTGGAGGTCCTCTCTCTTGTTCTTGTCGGGGACTTGACTAAGCTGTGAGTAATGG---
-------AGTT-CGTTTCACACA---CCACAATTTGCATCTGTTTTCTTCCTTCCTTTCCCAGTGACGACCGGTTGACGC
GATATCTTTGATCTTC----ACGCAGAGATGTTGCCCAAAACAATCTCACCGGCACTGTCAGATCATCTAAACAAAGAGG
TAGGA-TGCATTTTATTTGTATATCTATGTGAC----------------ATATACAGCTAGAGGTTTGTTGCTTTGTGCT
CACAAGAATTCCCCAATTGGCGTCATTTGCAGTGGCGACGGTCATCCAGGACACGCTCAAGTGAAGGCTACAAGCTGAGC
AGCA-GGGCAACCTCAACTTTCGTAAGAATAAGCTGAATGTTTTTC---CGTTCTGAAACTGATGGCAACAAAACTGTTT
TCAAGGCAAACTGAACATGCAGCCTGAGCTATTGTAGACATTTGTTC---------------------------------
------------------------AGTCCATTATTATTAGCAGCAACTTCAGCATAATGAATCCTTCTGTGCACATTTAC
CAGAAAACAATCCTTCTGGTTTATCTTAGCCACAAAAA------------------------------------------
----TAGCACACAGTGCTTCAGGAATCTCGAACCAAAACAAATTCCGATGCTCAGT-AAAATCTTTAGCATGCACACTCT
GCACGCGACGA--------------------------------TGAGCAAACATAAAGGAAGATCAACATACATGTGGAT
AGAGTACATAGCACACAGATT--TATCTCAAATATAATGACACATAGACATAGCTGTGTCTATCCAATAGCAGGTTCAAA
TGTAGTGGAAGCATCACAACTTTGGTTCAGAGAAATAAAGGA------CAGCTGCAGC-GACAATGACCCACAAACTTAA
CAGACTAGTTCAAGACTCACATCGATGGCACGGACAATAGCTTATAGCTATGATTTATTCTTAAATAATAAAGATGGTGC
TAAATAGGGCAGTCTTCTGATAGAGATCAGAAATGCAGCCTTCCTCCATGTCACGCCGACAAGACTTCATACTTCATCAC
ACAGTGACGGTGATCACCCCTGTTCTCAAGTCTTACTCTTCATCCCCCTGAAGTAACAACATCGAATCAAACATTAGCAA
AAGGAACACAATACAAGGCATTCCTTTTGTT-TATAAGAGAGAAGAAGAAGAGGAGCTGGCGCGATTGGGTACAAACCTT
AAGTTCTTTTCCTCGATGAGCTTGTGGATGCCTCGGCCTCCTGCCGCGGCGCGTTCCGGTTCCGGGCCAGCACAGGCTCC
TCCCGGACCGGATTCACTGGAGTTTCAAT
>chr3B_1443
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---------------------------------------GAGTTCTTCCTCGCTGTGCAGGGACTTGGGGAATGCAGGCC
TCTCAGGCGCCCTGGTTCCTGGACTGGGACGAATGGTGAACCTTCAGTACCTGTAAGTACTACTGCAGCTTGCTGCACTG
TACAGACTTGTCAAGTTACACTCAAAATTTCC------TGCATAATGATCAATATTCTCATCTTCATAGGGAGCTGTTTG
GGAACAACATCAGTGGACCGATTCCAGCAACCCTCGGCAACCTAACACGCCTGGTCAGCCTTGATCTCTACGACAACCGT
CTCACGGGCGCGATACCAGCCTCGCTCGGGAACATCGGGACGCTGCGTTTCCTGTAAGAATCTTGCTGCAGCGC------
TTTCGGATGACGAGAGGTTGAAATGCTTATTGTCTCCAACTGCTGAAAACAATCTGTTGGTGTCTATCTGCAGGAGGCTG
CATGGGAACAAGCTTGCAGGTGGTATACCGGCGTCTTTGGGCAATCTGACGAAGCTTCAAACTTTGGAGCTTCAGGAGAA
CATGCTGACCGGCACAGTGCCGCTGGAAGTCCTCTCTCTTGTTCTTCTTGGGCACTTGACTGAACTGTGAGTAGTA----
--CCTACAGTTTCATTTCACACA---CCAGAAATCGCATCCACTTTCCTCCTTCCTTCCCCAGTGACTTCCACTTACAG-
--TATTTTTTATCTTC----ATGCAGTAACGTTGCCAAGAACAGTCTGGCCGGCACTGTTAAATCATCTAAACCAAGAGG
TAGGGATGCATATTTTTATG------------------------------------------------------------
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>chr3A_1445
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-----------------------------------------GTTCTTCCTCGCTGTGCAGGGACTTGGGGAATGCAGGCC
TCTCAGGCGCCCTGGTTCCTGGACTGGGACGAATGGTGAACCTTCAGTACCTGTAAGTACTACTGCAACTTGCTGCACAG
TACAGACTTGTCAAGTTACACTCAGAATTTCC------TGCATAATGATCGATCTTCTCATCTTCATAGGGAGCTGTTTG
GGAACAATATCAGTGGACCGATTCCAGCAACCCTCGGCAACCTGACACGCCTGGTCAGCCTTGATCTCTACGACAACCAT
CTCACCGGCGCGATACCAGCCTCGCTCGGGAACATCGGGACGCTGCGTTTCCTGTAAGAATCTTGCTGCAGCGC------
TTTCGGATGACTAGAGGTTGAAATGCTTATTGTCTCCAACTGCTGAAAACAATCTGTTGGTGTTTATCTGCAGGAGGCTG
CACGGGAACAAGTTTGCAGGTGGTATACCGTCGTCGTTGGGCCGTCTGACGAAGCTTCAAACTTTGGAGCTTCAGGAGAA
CATGCTGACCGGCACAGTGCCGCTGGAAGTCCTCTCTCTTGTTCTTCTTGGGGACTTGACTGAACTGTGAGTAGCA----
--CATACAGTTTCATTTAACACACCTCCAGAAATTGCATCCACTTTCCTCCTTCCTTCCCCAGTGACTTCCACTTACAG-
--TATTTTTTATCTTC----ATGCAGTAACGTTGCCAAGAACAGTCTGGCCGGCACTGTCAAATCATCTAAACCAAGAGG
TAGGGATGCATATATT----------------------------------------------------------------
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>SNPs
----S--------------------------------SS-S-----------------------SS--------S-----
--------------------------------------------------------------------------------
-----------S--------------------S--------------------------------S--------------
------S---------------------------------------S---------S----------------------S
-------------------------S---S--------------------------------------------------
------------------------------------------------------------------S-------------
--------------------------S-----------S-----------------------------------------
--------------------------------------------------------------------S-----------
-------------------------------------------------S----------------------S-------
-----------------S---------------SS-S---------------------------------------S---
--------------------------------------------------------------------------------
------------------------------------------------------------------SS---SS-------
------------------S---------------------S-----------S-------S-------------------
-------------------------S------------------------------------------------------
-------S---------------------------------------------------S--S-----------------
-----------S----------------------------------------S---------------------------
----S---------------------------------------------------------------------------
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----------------------------------------------------------S---------------------
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----------SS--------------------------------------------------------------------
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----------------------------------------------------------S----------S----------
----------------------------------------------------------S--------S------S-----
--------------------------------------------------S-------S---------------------
--------------------S-----------------------------S-------------------------S---
--------------------------------------------------------------------------------
-------------------------S-----S-------------S----------------------------------
------S--S-------------------------S------------------------------------------S-
----S---S-----------S------------------S----------------------------------------
------------------------------------------S-------------------------------------
-----------------------S------------------------------S----------------------SSS
SS----------S-------------------------------------------------------------------
----------------------------------------------------------------------------S---
-S---------------S--------------------------------------------------------------
----S-------SS-----------S--------S-------------S------S----S---------S---------
-----------S--S------------------S------S----------------------S-S------S-------
--------------------------S---S----------S-------------SS--SSSSSS-SSSS-SSSSS-SSS
SSSSSSSSSSSSSSSSSSSSSSSS--------S----------S--S----SS-------S-------------------
---------------S------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------------------------S---S----------------------S---S-----S--SS-----S-SSS
S-S-SSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S----S-S----------------------
--------------------------------------------------------------S-S----------S----
----S--SS----------------------------------S-----S--------S---------------------
-----------------------S-------SS-----------------------------------------------
-----------------S------S-------------------------------------------------------
----------------------------------------------------------------S---------------
------------SS-----S---------S----SS--S-S------------S-------S-----S------------
----------------------------------------------S----S----------------------------
-----------------------------
>forward_75
-------------------------------------------------------TATAGGCTGGCGTCTCTCCA-----
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>reverse_1579
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----------------------------------------------------------GCGTCTCCCAAGTGACTTCC--
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>forward_1180
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----------------------------------------AAAGGACCCGTCTCTCCTCT--------------------
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>reverse_3664
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---------------------------------------------------------------ACTAATTCCGGACGGAG
GGA-----------------------------------------------------------------------------
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-----------------------------
