>input_sequence_55010
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------------------------------------------------ATGTCCATGTCCATGGCCACCACCGCCCTCCT
CCGGCTCGCGCCGCTGCCGCCGCACGCCCGGCTCCTCGCCCCGAGCTCCAAGAAACCCTCCCTCCTCCTCGCGCCCCTCG
GCAGCGGCCGCC---------GCGCCCTGCGGCTCGCGAGGGCCGCCGGCGACGGGCTCGCGGACCAGACCGTCTACAAC
GGCGTGTACGGGCCCTGGTCCGTGGACGACGCCGACGTGCGGGAGGTGCTGCTTTACCGGGCCGGGCTGGTCACGGCCGC
CGCGTCCTTCCTGGTGGCCGCCTCGGGGGCGTTCCTGGCGGAGGGGAACGCGGTCGGCGACGCCGTCCGGCAGGGCGCCG
ACCTCTTCTACGCCGCCGGGGCCGGGGGGCTCGGGCTGTCGCTGGTGCTCATCCACATCTATGTCACCCCCATCAAGCGG
TTCCTCCAGGCGCTGTGGGCGGTCGGCGTGCTCGGCTCCGTCGGCACCTACGCCCTCGCCGCGCGGCCGCTCGACGAGGG
GCTCGTCCGGTACGTGCTCGAGCACCCCGGGGCGATGTGGTTCGTCGGGCCCACCTTCGCCGCGCTCACAGGCCTCGTCT
TCAAGGAGGGTA------CAAT---TACTGTCTCTGCTTATGACTGAACTGTGGAAC--AGA-TTGGTTCATCTTAGAAT
CCTTGTACTGATTGTGTGAGCTGATTTCATCAAAAGCTGAGATATTTATACTGTTCACTGGAAGCATTCTGATTGATTAG
TTCATTGGCTGA-ATCCTTGCAATGAATGATTGAACAGTTCAATTTGTGAAATGTGTCTTGACAAAAAATGTACTCT---
-CACAGGTCTCTGCTATGGAAAATTGGAAGCTGGTATCTTGACGTTTGTTATCCCCATCCTTCTTCTTGGACACCTGGTA
AATTAGACGCATGAGATTTAGCATCTCAACTGAATCAGACCAGACGGAATGC-AAAGATTCACCTCAA------------
------------------------TTTTCTTACACTTGTTCTCTTAACATATTTGCAGTCTGGCTTGATGGACGATGGAA
CAAAATTGAGCCTCTTAGGAGTGTGGATGTCACTCTTCACTGTGTTCGCCGCTAGGAAATTCCAGCAGCCCATTAAGGTA
TC---ATCTAATTGCCTTCCACTGACAAGGATTTAGCATTAGCTGTAGCTGTTACAGGTTTTCTTGGTTGAATCTTATAA
TTCTGTTCTGT-----TCTGTTGCTGACAACGAAGGACGACATCGGCGACAAGTCCGTTTTCATATTCAACGCCCTCCCC
GAAGAGGAAAAGAAGGCTCTGCTGCAGAGGCTCGAGGCGCCAACTGAGCAGAAGTTTGAGTAG-----------------
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>chr4A_1_TraesCS4A01G334400
TTCTAGTTCATAGATTGAAAATTATGGTTTGAGATAGATAGATGATGGAGGTGGTGCTATTGGTGATGGTAGACGTCGGA
AAGCATGTACGGGGAAGGTGGAGGGCCAGACGAAGGGGATGGAAGCCCTATGCAAGACGCCTTGCATGCCGGCTGCCGTG
CTCTGGTAGCCCCACAACCTTTCAGCAGATGTCACTGTTCCCACCACCCAAGGGGCTTGACTTTGATGGGTCAGAGGATA
GGGCGGCGTTTTGAGCGGGAGGGTGGCGCGACGTGCGAGCTGGATGATAGCAGGGATGGAGTGCGAGTGGGATGGTGGCG
ACGACGCCATCGAGTGGGACTGCAGGAGTATGACGACGGCGAGGGTGGTGGCGGTATGCGAGAGGGATTTGACCTAGCAC
TCGCTCGGGAAATTGGACGAGAGAAAAGAAGTGGCTGGCCGACGTTTGATTTGGTAGAAAAGAAGTGGGCTGAAAGAAAA
ATCGATGGGAGGGGGATCGACGAGGCCGACGACGTGAATGGATGAAGGGCTAACAAACGAAACGGACCCCTTTAACAATA
GAGATGCCTCTCACAATATAAAACAGTAGCCGTTCAGTCTTTCAGATGAGATTAGGGATCGGTCCAATGCTTTTACTTCA
TGTAATATAATCCATGAGTTTAGGAGCTCGAATACCGAGGCTCGCAATCTCGCTAAGCATGCTTTAACACTAGGTTCCGG
CCGTCATGTTTGGCTTGGACAACCTAGTGATCTTCTTTTCCTACCTGTAACTGTGGAGATGATATGAATAAAGCTTAGCG
AGTTTGTCTCAAAAAGAAAAAAGATAAGAAAAAGGAAATGGAGCACACGCCGTTGGATCCAGAACAGAGATAATATCCTC
ACCGTCCGCGAAGCCTACGGCCAGCACACACTCACTGGAA--------CCCACCGGAAGCCACACCGGAGAACCACCCCA
CGAAAAAAATCCCCCGAGAATACCAAACCGAACTCAGCAACCTCCACCATGTCCATGTCCATGGCCACCACCGCCCTCCT
CCGGCTCGCGCCGCTGCCGCCGCACGCCCGGCTCCTCGCCCCGAGCTCCAAGAAACCCTCCCTCCTCCTCGCGCCCCTCG
GCAGCGGCCGCC---------GCGCCCTGCGGCTCGCGAGGGCCGCCGGCGACGGGCTCGCGGACCAGACCGTCTACAAC
GGCGTGTACGGGCCCTGGTCCGTGGACGACGCCGACGTGCGGGAGGTGCTGCTTTACCGGGCCGGGCTGGTCACGGCCGC
CGCGTCCTTCCTGGTGGCCGCCTCGGGGGCGTTCCTGGCGGAGGGGAACGCGGTCGGCGACGCCGTCCGGCAGGGCGCCG
ACCTCTTCTACGCCGCCGGGGCCGGGGGGCTCGGGCTGTCGCTGGTGCTCATCCACATCTATGTCACCCCCATCAAGCGG
TTCCTCCAGGCGCTGTGGGCGGTCGGCGTGCTCGGCTCCGTCGGCACCTACGCCCTCGCCGCGCGGCCGCTCGACGAGGG
GCTCGTCCGGTACGTGCTCGAGCACCCCGGGGCGATGTGGTTCGTCGGGCCCACCTTCGCCGCGCTCACAGGCCTCGTCT
TCAAGGAGGGTA------CAAT---TACTGTCTCTGCTTATGACTGAACTGTGGAAC--AGA-TTGGTTCATCTTAGAAT
CCTTGTACTGATTGTGTGAGCTGATTTCATCAAAAGCTGAGATATTTATACTGTTCACTGGAAGCATTCTGATTGATTAG
TTCATTGGCTGA-ATCCTTGCAATGAATGATTGAACAGTTCAATTTGTGAAATGTGTCTTGACAAAAAATGTACTCT---
-CACAGGTCTCTGCTATGGAAAATTGGAAGCTGGTATCTTGACGTTTGTTATCCCCATCCTTCTTCTTGGACACCTGGTA
AATTAGACGCATGAGATTTAGCATCTCAACTGAATCAGACCAGACGGAATGC-AAAGATTCACCTCAA------------
------------------------TTTTCTTACACTTGTTCTCTTAACATATTTGCAGTCTGGCTTGATGGACGATGGAA
CAAAATTGAGCCTCTTAGGAGTGTGGATGTCACTCTTCACTGTGTTCGCCGCTAGGAAATTCCAGCAGCCCATTAAGGTA
TC---ATCTAATTGCCTTCCACTGACAAGGATTTAGCATTAGCTGTAGCTGTTACAGGTTTTCTTGGTTGAATCTTATAA
TTCTGTTCTGT-----TCTGTTGCTGACAACGAAGGACGACATCGGCGACAAGTCCGTTTTCATATTCAACGCCCTCCCC
GAAGAGGAAAAGAAGGCTCTGCTGCAGAGGCTCGAGGCGCCAACTGAGCAGAAGTTTGAGTAGCTGGTATCATCGAGCAA
GCATGACCACGGTAGCTAGTCGATGGACGCCTGTACAGGTGCCCTCCCGAGGAGGAAGACAAAATTCTGCTAGCGAGGCT
TGAGGGCCAGGCTGAGCTATAGTTGTAGCAGGCACAACGCTGATAGATAGCTAGTGGATGGATGCCTGCAACAGTAAGTG
TATTTATATGGTAGATTT----GGAAATCTGAGCATACAGAGATGACAATACAGTAAATGTGATGTAGTCACAGATCTAT
GAGGTTGCATGTAAAATTTGCCAGCCGCTGGGGTCGGGAAATTTCATAATTAGAGGCTGCAACCCTGAAACTCTGAAACT
GAAGCATCTGTTTCTTCAGTTTCATTGCTACATTGCCGGTTTGCATCTGTTTTAATGAAACAAAGGGAAAGCCAGTAGTT
CTTTCAATCAAGATAACAATTTATGCACTTGCTGTGGTACTTGCATGGCTTGAGAAAAGGGACATGAAGTTGTAGCCCAA
ATTGATGGTTCAGAGCGCGCTATATCGTTTAGAAGAGGTCCTGCGCTAAGGGTCTTTGGTCCAAACACATGAACAAAATT
TTAAATATAGCATTGCTGTAGCATTTGAAAGAGGTCTGCCGCTAACACCTGTAGCGCGCTATTTAAAACTATATTCAGAC
GAAAGAACTATGCCCCAAAACCTTCTCGCTTCTGCTCTAAAACTATACGAGCAATGATTCAGTACACACACACACACACA
CACACACACACACACACACACCCCCTCACAAAACGTATAAAGGGTAGTATGGACTTTTGACAAATTGTACTCGCTTTTAA
TCAAAAAAGAATAGATGCCCTCGGCTGGATTCGAACTACAGCCGTCACAGACTATATGTGGCCACACAAACCATCTGAGC
TGCATACCTGATTTGCCTACAAACCTTGTTTTTCTCTTCTTGTTTGAGAGACATAACGCCAAGAAAAAAAACACACCACC
TTCACTCTTTGGTTTATGTTTCTTTTT
>chr5B_847
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----------------------------------------------ACGCCGTTGGATCCACATCAGAGATAATATCCTG
ACCGTCCGCGGAGCCTACGGCCAGCACGCACTCACTCGAT--------CCCACCGGAAGCCACACCGGAGAACCACCCCA
CGAAAAAGATCCCCCGAGAAGACCAAACCGAGCTCAGCAACCTCCACCATGTCCATGTCCATGGCCACCACCACCCTCCT
CCGGCTCGCGCCGCTGCCGCCGCACCCCCGCCTCCTCGCCCCGACCTCCAAGAAGCCCGC---CCTCCTCGCGCCCCTCG
GCAGCGGCCGCC---------GCGCCCTGCGGCTCGCGAGGGCCGCCGGCGACGGGCTCGTGGACCAGACCGTCTACAAC
GGCGTGTACGGGCCCTGGTCGGTGGACGACGCCGACGTGCGGGAGGTGCTGCTGTACCGGGCCGGGCTGGTCACGGCCGC
CGCCTCCTTCCTGGTGGCCGCCTCGGGGTCGTTCCTGCCGGAGGGGAACGCGGTCGGCGACGCCGTCCGGCGGGGCGCCG
ACCTCTTCTTCGCCGCCGGGGCAGGGGGGCTCGGGCTGTCGCTCGTGCTGATCCACATCTACGTCACCCCCATCAAGCGG
TTCCTCCAGGCGCTCTGGGCGGTCGGCGTGCTCGGCTCCGTCGGCACCTACGCCCTCGCCGCGCGGCCGCTCGACGAGGG
GCTCGTCCGGTACGTGCTGGAGCACCCCGGGGCGATGTGGTTCGTCGGCCCGACCTTCGCGGCGCTCACAGGCCTCGTCT
TCAAGGAAGGTACTCCTGCAATTACTACTGTCTCTGCTTATGACTCAACTGTGGAAG--AGATTTGGTTCATCTTAGAAT
CCTTGGACTG-TTGCGGGCGCTGATTTCATTAGTGTTAGAGATCTTTGTATTGTTAACTGGATGCATTCTGATTGATTAG
TTCATTGAATGAAATCCTTTCAATGAATGATTGAACAGTTCAATTTGAGAAATGTGTCT-GACAAAAAATGCACTCTCAC
TCACAGGTCTCTGCTATGGAAAATTAGAAGCTGGTATCTTAACGTTTGTCATCCCCATCCTTCTTCTTGGACACCTGGTA
AATTAGACGCATGAGATTTAGCATCTCAACTGAATCAGACCAGACGGAATGCAAAAGATTCAGCTCAA------------
------------------------TTTTCTTACACTTGTTCTCTGAACATGTATGCAGTCTGGTTTGATGAACGACGGGA
CAAAAATGAGCCTCTTAGGAGTGTGGATGGCGCTCTTCACCGTGTTCGCCGCGAGGAAATTCCAGCAGCCCATCAAGGTA
TTATAGTCTAATTGCCTTCTCGCAAGTGTTTATCGAC---AGTTGTAGCTCTTACACATTTTCTTGGTTGAGTCTTACTA
TTATGTTATGTTCTGGTCTGTTGTTGGCAACGCAGGACGACATTGGCGACAAGTCGGTTTTCATATTCAACGCCCTCCCC
GAAGAGGAAAAGAAGGCTCTGCTGCAGAGGCTTGAGGCACCAACTGAGCAGAAGTTCGATTAACAGGTA-----------
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>chr5D_850
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-------------------------------------------------CCGTTGGATCCATACCAGAGATTATATCCTG
ACCGTCCGCTGAGCCTACGGCCAGCACACACTCACTCGAGCGGTCGAGCCCACCGGAAACCACACTGGAGAACCACCCTA
CGAAAAAA-TCCCCCAGGAAGGCGAAACCGAACTCAGCAACCTCCA------CCATGTCCATGGCCACCACCGCCCTCCT
CCGGCTCGCGCCGCTGCCGCCGCAACCCCGGCTCCTCGCCCCGAGCTCCAAGAAACCCTCCCTCCTCCTCGCGCCCCTCG
GCAGCGGCCGCCGCGCCGCGGGCGCCCTGCGGCTCGCGAGGGCCGCCGGCGACGGGCTCGCGGACCAGACGGTCTACAAC
GGCGTGTACGGGCCCTGGTCCGTGGACGACGCGGACGTGCGCGAGGTGCTGCTGTACCGGGCCGGGCTGGTCACGGCCGC
CGCGTCCTTCCTGGTGGCCGCCTCGGGGGCGTTCCTGCCGGAGGGGAACGCGGTCGGCGACGCCGTCCGGCAGGGCGCCG
ACCTCTTCTACGCCGCCGGCGCCGGGGGGCTCGGGCTTTCGCTCGTGCTGATCCACATCTACGTCACCCCCATCAAGCGG
TTCCTCCAGGCGCTGTGGGCGGTCGGCGTGCTCGGGTCCGTCGGCACCTACGCCCTCGCCGCGCGGCCGCTCGACGAGGG
GCTGGTCCGGTACGTGCTCGAGCACCCCGGGGCGATGTGGTTCGTCGGCCCGACCTTCGCCGCGCTGACTGGCCTCGTCT
TCAAGGAAGGTATTACTGCAGT---TACTGTCTCTGCTTATGACTGAACTGTTGAACTGAGA-TTGGTTCGTTTTAGATT
GACTATACTGAATGCGTGAACTGATTTCATCGATAGCAGAGATCTTTCTAGTGCTCACTGGACGCATTCTGACTGA----
-------------ATGCTTGCACTGAATGACTGAAAACAGTTCGATTTTGTAC-------------AAATGCAATCC---
-CACAGGTCTCTGCTATGGAAAACTGGAAGCTGGAATCTTGACGTTTGTTATCCCCATCCTTCTTCTCGGACACCTGGTA
AATTAGATTTCTGAGATTTAGCACTACAATCTGTTAATGGTTGATCTCAAGTATGCTCATCTTGCTCCCTGTTAAAAAGG
GGGAAAACACCAGTTGCGTTCATCTTTTCATACACTTGTTTTCTGCACATGTATGCAGTCTGGTTTGATGGACGACGGGA
CAAAAATGAGCCTCTTAGGAGTGTGGATGGCGCTCTTCACCGTGTTCGCCGCGAGGAAATTCCAGCAGCCCATCAAGGTA
TTATAATCTAATTGCCTTCTTGCAAGTGTTTATCGAC---AGTTGTAGCTCTTACACATTTTCTCGGTTGAATCTTACTA
TT---------TCTGGTCTGTTGCTGACAACGCAGGATGACATTGGTGACAAGTCGGTTTTCATATTCAACGCCCTCCCC
GAAGAGGAAAAGAAAGCTCTGCTGCAGAGGCTCGAGGCGGCAACGGAGCAGAAGACTGAGTAGCTGGTATCATCAAGCAA
CCATGACCACGATAGCTAGTCGATGGACGCCTGTACAGGTGCCCTCCCGAGGAGGAAGACAAAATTCTGCTACCGAAGCT
TGAGGGCCAGGCTGAGGTATAGTTGTAGCAGGCACAACGCTGATAGATAGCTAGTGGATGGATGCCTGCAACAGTAAGTG
TCTGTATATGGTAGATTTGGAGGGAGATCCGAGCATGCAGAGATGATAATACAGTAAATGTGATGTAGTCACAAATCTAT
TAGGTTGCATGTTAAATTTGCCAACCTCTGGGCTCTGGAAATTTCAGAATTACAAGCTACAAC-----------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S-S---------------S
----------S-------------------------S--S----------------------------------------
--------------------S-----------------------------------------------------------
-------------------------S------------------------------------------------------
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-----------------------------------------------------S--------------------------
-------------------------------------S------------------------------------------
-------------------------------------------S-----S-----------S------------------
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------------------------------------------------S--S----------------------------
-------S------------------------------------------------------------------------
--------------S------------------S---S-----S---S--S-----------S-----------------
-------SS--------------------------------------------------S-----------S--------
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--------------------------------------------------------------S-----------------
--------------------------------------------S-----S-S----------S-----------S--S-
-----S-----------------------S-S--------S-----------S--------------------S------
-S-----------------SSSSS-SSSSSSS-SSS-SSS--S-------S-----SS-------------------SS-
--S----S------------------------S----------S-----------S------------------------
--------------------------------------------------------------------------S-----
S----------S------------------------------------------------------------S---S---
----------------S---------------------------------------------------------------
-S-S---------------------S---S------S---------S--------------------------S------
S-----------S----------S--S-----S--S----------S-----S-S---S----SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_289
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-----------------------------GACGTGCGAGCTGGATGATA-------------------------------
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>reverse_2121
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----------------------------------------TGTGTTCGCCGCTAGGAAAT--------------------
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>forward_290
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------------------------------ACGTGCGAGCTGGATGATAG------------------------------
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>reverse_2133
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----------------------------------------------------TAGGAAATTCCAGCAGCCCA--------
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>forward_293
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---------------------------------TGCGAGCTGGATGATAGCAG---------------------------
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>reverse_2273
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--------------------------------AAGGACGACATCGGCGACAA----------------------------
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>forward_295
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-----------------------------------CGAGCTGGATGATAGCAGGG-------------------------
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>reverse_2395
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--------------------------------------------------------------------------GAGCAA
GCATGACCACGGTA------------------------------------------------------------------
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