>input_sequence_55007
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---------------------------------ATGGCGGCCTCCTCTCCCTCCGCCCTCGCGCTCTCCCCCACCACGCG
GGTAAGCCA--TCAGCTTCGCTACCATCCTT--------GTGCCTTTGCTTGACTTGTTTCTGCTGACTTCTCGCCTGCT
GCTGC---A------------GGTAGCTGGCTCGTCCGTGCTGCTGGCGCTGAGGCGGACGCCGGCGACGCGCCTGGCCG
CGGTTTCCTCCGGCCAGCTCCGCGCCTGCTCTTGGGGCGCGCTGCGCCATCTCCGGCCGGAACCCCCCCGCTC-------
-----------------CAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACGCACGCCACGCTTCTCTCCCTCTTTC
TTTCTTTTCACCAAGAGATGGCAGTTCCACTCTAGTATCCGGTCGACGACCTCGCAAGGCCATGGGTTGACTGACTGACT
GAATTCATTCTTGCTCCCGACGTACAGGGCTGTCGACGTCCCAGATTGCCAGCTCCGCCTTCACCCTGGGCACCGTCGCC
GTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCGTAAGCCCACCATTGCTCCCGCGACTTCAATT
TTTTCACCCGGTACACGAGGCGGCCGGACTCATGTCTCCTTCTTGCTGCTGCTGC-------------------------
-------------------------------CGCAGACTAAGCGCACCGTGGAGAGCACCGCCCCGTACGTGGCGCTCGG
CCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGACCCCCGACACCATCCGCGCCATGTTCGCCAGCAAATACTGGCTCC
CGGAGGTCAGTCAGCAGTCCTCACACTCTCTGAATGTTCAGTA-------------------CAAGT-------------
------------ATTGTGCAGTGTCTGAATGTTCTTGTGCCTTAGCAAAAAGT----ATAACATGTGTGGTTCCTCGATC
TCGCGTGTAGTTGCCTGGCATTGTGAGGATGTTCGCGAGCGAGATGACCGTTGCCTCCGCCTGGATCCACCTCCTTGCCG
TCGACCTCTTCGCCGCAAGGTCAGTTGGCCATGTTTTGTTTGCTTTCAAGTGTATGTGATTGTGAGGACTGTGGTGGTAG
GTGTTCATGTTTTCC-------TTGTTCTGGCTGGTGATGCAGACAAGTGTACCAGGATGGCATCAAGAACAACATCGAG
ACCAGGCATTCGGTTTCGCTGTGCCTGCTCTTCTGCCCCATTGGGATTGCCGCTCATGCGCTCACTAAGGTACTGGCGGG
TTCCACAGGTCGACCGC----ACTGACGACCGATTGCGTGTAGGCAGGCTCCCCTTGTTTAGATGGCTCAGATCGTGAGA
TTCAGATATATGAATAAAATTGATTTGATGCACCATTTGTTCCATGTAGATTTCACATTGA-------------------
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>chr3A_1_TraesCS3A01G043800
ACTGATATCCGTGATGAGATGAGAAGGTTTGGGCCAAATGGCTCGACCTGTGGACTGAGACAGTTTTGGTTTT-AAATCA
AAAATGTTGTTGAAACTTA-TACCATGTCTC---TGTTGGTTTGTGTTTTATCCATTTTCACTTTGCATGCTG-------
-------TTGTGTTTTATCCATTTTGCACTTTGTATGCTGTTGATTTAATCGTTT---GTTTCACTCTCGGGTCTTCTTT
TCTTGCATCACTTTTTTTATT------------------------------------TTTTTTGCAGGCAGTGTGTTGGT
CTCT------------CGCCGAGGTAACTGACTGTGTGTTGCAGCAGAGTGGTGCGGGTATCTGGTGCTGATCACGGCTA
CTCGGAGCAGGCACCGAGGCACGTGTCGGCGAGGAG-----------------------------------TCAAGGCTC
GGCACATGGGCAACATGGCTACAGTT---------TGAGGTGAGGATGTACGTACTAATAATGGATCGTGAAGCTGGACG
TGGTTGAGCACGGACGGTGGTGCTGGCGGCCACC-------------GCCCCCTCCCACTCCGGCGGGACCCGCCACCCC
CACCGACCTGCCCTTCCCTTCCCAAGATGGTAAGGCAAACGAAATCAGTGGACTAGTCACTCAATCCTTCCTACCATACC
ACGGAAGTGAATCCTCTAACACCCTTCCGTTCTTCACTTCTATATGATTAAGGCTAAAATGATTTAAATTAATTTGCAAA
TTACAAATCTACTTTATACACTTACAAAAATTACATATAGATAAAATTAATTTTAAATTTATTTATCTCAATAGTAACTA
TGTACAGTGCCTACTTAAATAGATAATACAGTGTTTGCTACAGTATCCATGACTTTTCTTTTGTGTTTTACACTAGTTTG
CACTGTAGCTATGTTAGAGGATCCACTTCCCCATACTTCCCCATACGACACCACACCACACCACAGCTCGGCGCCTTGCC
TGCTTCGCCACTCCCACT-----------AGTACAAAGGGGAAGGAGGGGGAGGCCCTCCCCCCCCTTCTCCTCCTTCCT
CCCGACCC---------------CCGGCAGGAAATGGCGGCCTCCTCTCCCTCCGCCCTCGCGCTCTCCCCCACCACGCG
GGTAAGCCA--TCAGCTTCGCTACCATCCTT--------GTGCCTTTGCTTGACTTGTTTCTGCTGACTTCTCGCCTGCT
GCTGC---A------------GGTAGCTGGCTCGTCCGTGCTGCTGGCGCTGAGGCGGACGCCGGCGACGCGCCTGGCCG
CGGTTTCCTCCGGCCAGCTCCGCGCCTGCTCTTGGGGCGCGCTGCGCCATCTCCGGCCGGAACCCCCCCGCTC-------
-----------------CAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACGCACGCCACGCTTCTCTCCCTCTTTC
TTTCTTTTCACCAAGAGATGGCAGTTCCACTCTAGTATCCGGTCGACGACCTCGCAAGGCCATGGGTTGACTGACTGACT
GAATTCATTCTTGCTCCCGACGTACAGGGCTGTCGACGTCCCAGATTGCCAGCTCCGCCTTCACCCTGGGCACCGTCGCC
GTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCGTAAGCCCACCATTGCTCCCGCGACTTCAATT
TTTTCACCCGGTACACGAGGCGGCCGGACTCATGTCTCCTTCTTGCTGCTGCTGC-------------------------
-------------------------------CGCAGACTAAGCGCACCGTGGAGAGCACCGCCCCGTACGTGGCGCTCGG
CCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGACCCCCGACACCATCCGCGCCATGTTCGCCAGCAAATACTGGCTCC
CGGAGGTCAGTCAGCAGTCCTCACACTCTCTGAATGTTCAGTA-------------------CAAGT-------------
------------ATTGTGCAGTGTCTGAATGTTCTTGTGCCTTAGCAAAAAGT----ATAACATGTGTGGTTCCTCGATC
TCGCGTGTAGTTGCCTGGCATTGTGAGGATGTTCGCGAGCGAGATGACCGTTGCCTCCGCCTGGATCCACCTCCTTGCCG
TCGACCTCTTCGCCGCAAGGTCAGTTGGCCATGTTTTGTTTGCTTTCAAGTGTATGTGATTGTGAGGACTGTGGTGGTAG
GTGTTCATGTTTTCC-------TTGTTCTGGCTGGTGATGCAGACAAGTGTACCAGGATGGCATCAAGAACAACATCGAG
ACCAGGCATTCGGTTTCGCTGTGCCTGCTCTTCTGCCCCATTGGGATTGCCGCTCATGCGCTCACTAAGGTACTGGCGGG
TTCCACAGGTCGACCGC----ACTGACGACCGATTGCGTGTAGGCAGGCTCCCCTTGTTTAGATGGCTCAGATCGTGAGA
TTCAGATATATGAATAAAATTGATTTGATGCACCATTTGTTCCATGTAGATTTCACATTGATTATTCCCACCCATTCAAT
TGGAATTGGCTCGAGCAACTGAATCTACTCTTCATACAAGGGCTAGGACAGCTTATTTGTACTATGTGAGTCATGTCACG
AAGAAATGTACATCTAATTTATATCATGTCTCAGATTTAATGGTGAGACACAAATGTAAAGAAATGAACTGCACTTGCGG
ATTGGG--TTATTGTTCAAG------------------------------------------------------------
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-------------------------------------------------------------------------CACATAG
TAGACAAATAGAGGGT---TTATACTACAACTTTACAACAACTGAATTTCTGAATGCTCTGCCAAGGTTGCGTGATTCTT
---ATTACAGACTGTGTAAACCTATAGAAGTGGTAATTGATC--AATCTGGCGTGTCAGCGGCAGCTACAAT-----ACC
TTC-------CAGCCCGTA--TATCTATATG-----TGTAC-A--AGTATAGCTATTTTACTGTATGTATAACGGCGTGG
TATCTG---CTTTCTTCTTGTCGAATATCCGGTTGAGTATCAAGGCCAGCCTTACGCCGGCCTGTGCTAGTCTCTTCTCC
ACAACCGGGTACCGGGTGAAGTAATAATCATCTGCATTTCGGAGGAGTTG---------CCAACCATTAGCACTGCA---
-------CTCTGGCT-GGCAAAATGCATACACTGCTTTA----GGTTTTACAAGTACTGCTGTGAACATAGACACTG---
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---ACCTCCTAGGGTGATGTTCTGCACCACATCTTTGTAGGCGTAGTTGCACGACAGATTTATGCTCTCAATCGCGTAGC
TGCAAGGCGGA--TTCGATA-----CCATGCCATGTCAAATCTTGCGATC-GAATTAGTTGTACAGGACACGAACTG---
--GAAAAAAAGGGGAAGCAATGGGATAT-GAATCCTACTCGTTTGCGCAGGTCGCCTTCTTGTTGGCGCAGTTTTCCCAG
TGACCGACATCGTCGGACCATCCCTCCTGCAGATCACAGCTAGCATTAGAAACACAGCAAAGCTATTGG---T---GGCA
GTATTTTCAACTGTC-AACAGTCTTGTGGTGTACAGACAGTGAGGTTCGTCTGGAGTGCATCCACCATGGTGTCCATGCT
>chr3D_51
--------------------------------------------------TGGTCTGAGACAGTTTTGGTTTT-AAATCA
AAAGTGTTGTTGAAACTTATTACCATGTCTCTGTTGTTGGTTTGTGTTTTATCCACTTTCACTTTGTGATGCTGCA----
---------------------------------------------------------------------TGCTGTTCTTC
TCTTCC------TTTTTTTTG------------------------------------TTTTTTGCAGGCAGTGTGTTCGT
CTCTTCTCTCTTGCCTTGCCGAGGCAACTAACTGTGGGTTGCAG---AGTCGTGCGGGTATCTGTTGGAGATGACGGCTC
GGAGC-----------AGGCACGTGTCGGCGAGGAGGCGGGCGGAGAGAGGAGGGGAGGGGGGTGTCCCAGTGAAGGCTC
GGCACATGGGCAACATGGCTACAGTTGCCAGCGACCGAGGTGAGAACGTACTACT--ATAATTGGTGGTGAACCTGG---
---------ACGGACGGTGGTGGTGGTGGCCACCGTCCAGGGTCCAGGCCCCCTCCCACTCCGGCGGGACCCGCCACCGA
CCT-GACCTGACCTGCCCTTCCCAAGATGGTAAGGCAAACGAAATCAGTGGAGTAGTCACTCAATCCTTCCTACCATACC
AC------------------------------------------------------------------------------
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------------------------------------------------------ACCGCACCACAGCTCGGCGCCTTGCC
TGCTTCGCCACTCCCACTAGGAGAGGACTAGTACAAAGGGGAAGGAGGGGGAGGCCCTCTCTCCCCTTC-------TCCT
CCCGACCC---------------CCGGCTGGAAATGGCGGCCTCCTCCCCCTCCGCCCTCGCGCTCTCCCCCTCCACGCG
GGTAAGCCATCTCAGCCTCGCTACCATCCTCGATTCCTCGTGCCTTTGCTTGACTTCTTTCTGCTCGTTTCTCGCTTGCT
GCTGCTGCTGCTGCTGCAGGTGGTAGCTGGTCCGTCCCTGCTGCTTGCTGTGAAGCGGACGCCGGCGACGCGAGTGGCCG
CCGCTCCCTCCGGCCAGCTCCCCGCCTGCTCTTGGGGCCC---------TCTCCGGCCGGAGCTCGCCCCGGCCCCTGGC
CCCTGCGCCGCCCGCTGCAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACTCGCCACTCTCGCCACA--CTCT---
TTTCTCTTCACCGAGAGTTGGCAGTTCCACTCTGGTAGCCCGTCCACGACCTCGCAAGGCCATGGGTTGACTGACTGAAT
GAATTATTTCTTGCTCCTCACGTACAGGGATGTCCACGTCCCAGATTGCCAGCTCCGCCTTCACACTGGGCACCGTCGCC
GTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAGCATCGTAAGCCCACCCCCACCTTCCTCTTCTTCCCC
ACGCGGCCAGAGTA------------GACTCATGTCTTCTTATTCT---TGCTGC-------------------------
-------------------------------CGCAGACTAAGCGCACCGTGGAGAGCACCGCCCCCTACGTGGCGCTCGG
CCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGACCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCC
CCGAGGTCAGTCCT---------CACACTCTGAATGTTCAATGCCATTACTGGCTCTGCACTCTCACAGCAAAACTAAAA
TTCAGT---AGCGTTGTGCATTGTCTGAACGTTCTTGTGCCTCGGCATATCACATATGTT-------TGGTTCCTTGATC
TTGCGTGTAGTTGCCTGGCATTGTGAGGATGTTCGCGAGCGAGATGACCGTCGCCTCCGCCTGGATCCACCTCCTTGCCG
TCGACCTCTTTGCTGCAAGGTCAGTCAGCCCTTGTTTCTTCACTTTCAAGTGTATGCGATTGTGAACC----------AG
ATGTTCATGTTTGTGTTTCCTTTTTTCCTTGCTGGTGATGCAGACAAGTGTACCATGATGGAATCAAGAACAACATCGAG
ACCAGGCATTCGGTTTCGCTGTGCCTGCTCTTCTGCCCCATCGGGATCGCCGCTCACGCGCTGACCAAGGTACTCGCGGG
TTCCACAGGTCGATCAC----ACTGACGACCGATTGCCTGTAGGCAGGCTCCCCTTGTTTAGATGTCTCAGATCGTGAGG
TTC-----------------------------------------------------------------------------
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-------AGATATATGAATAAAATTGATTTGGTGCACCATTTGTTCTATATAGATTTCACATTGATTGTTCCCACCCATT
CTATTGGAATTGGCTCAGGAAACTGAATCTACTCGCCATCATGGGTTCATAGAAGGGCTAGTAGAACAGG--TTATTTGT
ACCATC-GAGTCATGACACCAAGAAATGTACAACTAATTTATATCATGTCTCAGATTTAACGGTAACACACTAATGTAAA
GAAATGAAGAAGATGAGAGAAAGATAAAATATCGCTTTCAACTGCACTTGTGGATTTGT--TTATCGTTCAAGCAAATAG
-----------------------ACTACAACTTTACAACAATTGAATTTCTGAATGCTGTGCCAAGGTTGCGTGACTCTT
---ATTACAGAACGCGTAAACCTATTGAAGCGGTAAGTGATC--GAACTGGCGTGTCAGCGGCAGCTACAAT-----ACC
TTC-------CAGCCCGTA--TATCTACTCTATATTTGTACAAGTAGTATAGCTACTTTACTGTATGTATAACGGCATAG
CATCTGCTTCTTTCTTCTTGTCGAATATACGGTTGAGTATCAGCGCCAGTCTGACGCCGGCCTGTGCTAGCCTCTTCTCC
ACAACCGGGTACCGGGTGAAGTAATAATCATCTGCATTTCAGAAGAGTTG---------CCAACCATTAGCACTGCA---
-------CTCTAGCTAGGCAAAATGTATACACTGCTGTA----GTTTCTACAAGTACTGCTGTGAACATAGACACTG---
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---ACCTCCTAGGGTGATGTTCTGCACCACATCTTTGTAGGCATAGTTGCATGCAAGATTTATGCTCTCGATCGCGTAGC
TGCAAGGCGGA--TTTGATA-----CCATATCATGTCAAATCTTGTGATC-GAATCAGTTGCACAAGACATGAACTG---
--AAAAAAGCGCAAGTGT--TTGGGTATGGAATCATACTCGTTTGCGCAGGTCGCCTCTTTGTTGGCACAGTTCTCCCAG
TGACCGACATCGTCGGACCATCCCTCCTGCAGCTCACAGCTAGCATTATTAGAAACACAACAAGGAAGGTACT---GGCA
GTGTTTTGAACTGTT-GATAGGCTAGTGGTGTACTCACCGTGAGGTTCGTCTGGAGGGCGTCCACCATGGTGTCGAGGCT
>chr3B_51
--------------------------------------------------TGGTCTGAGACAGTTTTGGTTTTTAAATCA
AAAGTGCTGTTGAAACTTATTACTATGTCTC---TGTTGGTTTGTGTTTTATCCACTTTCACTCTGTATGCTGTTGATTT
AATCGTTTTGTGTTTTATCCACATT-CACTTTGTATGCTGTTGATTTAATCGTTTTACGTTTCACTCTCTGGTGTTCTTC
TCTTGT------TTTTTTTTTGTTTTTTTTTTTGCAGGGAGATGAGCTTCTGTTGATTTATTTGACGGCGGTGTGTTGGT
CTGT------------TGCTGAGGTAACTAACCATGGGATTGCATAGTCCTCTGCTTCCTCCAGAGCCGCCTGAGGTGAG
TACTTGGTAATGGCGGC--CACGTGTCGGCGAGGAGGCGGCC----------------------GTCCCAGTCAAGGCTC
GGCACATGGGCGACATGGCTACAGTTGCCGGCGACTGAGGTGAGAAGGTACTACT--ATAATGGGTGGTGAACCTGG---
---------ACGGAAGGTGGTGCTGGTGGCCACCGC------------CCCCCTCCCACTCCGGCGGGACCCGCCACCCC
ACC------GACCTGCCGTTCCCAAGATGGTAAGGCAAACGAAATCAGTGGAGTGGTCACTCAATCCTTCCTACCATACC
AGAT----------------------------------------------------------------------------
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------------------------------------------------------ACCACATCACAGCCCGGCGCCTTGCC
--------------------------ACTAGTACAAAGGCGCTCCGCT------CCCCGTCTCCCCTTCCCGGAACACGG
CGACTCCACCACCACCACGACTACCGGCTGGAAATGGCGGCCTCCTCCCCCTCCGCCCTCGCGCTCTCCACCACCACGCG
GGTAAGCCA--TCAGCTTCGCTACCATCCTCATGCCTTTG---------TTGACTTCTTTCTGCTGACTTCTCGCTTGCT
GCTGCTCCA------------GGTAGCTGGCTCGTCCGTGCTGCTTGCTGTGAGGCGGACGCCGGCGACGCGCGTGGCCG
CCGTTCCCTCCGCCCAGCTCCGCGCGTGCTCCTGGGGGGCGCCGCTCCATCTCCGGCCGGAGCTCGCCGCGGCCCCTGCC
CCGTGCGCCGCCCGCTGCAGGGCGCCTCTGCTCCGGCCTCGCGCATGTACGCACTCGCCACTCTCGCCATACTCTCT---
TTTCTTTTCACCAAGACTTGACAGTTACAGCAGCGC--CCGGTCGACGGCCTCGCAACGCCATGATTTGACTGAATTATT
GCTTCC------------CACGTACAGGGCTGTCGACGTCCCAGATTGCCAGCTCCGCCTTCACCCTGGGCACCGTCGCC
GTCCTCCCCTTCTACACGCTCATGATCGCCGCCCCCAACGCCAACATCGTAAGCCCACCGCCCCCC--------------
----------------------------CTCATTCCTCTTTCTCTTCTCCTCCGCAGGCCGCGCCATTGACAGGAAAAAA
ACACTCACCTGCTTATCCTCGTGCCTTTCGGCGCAGACTAAGCGCGCCGTGGAGAGCACCGCCCCCTACGTCGCCCTCGG
CCTCCTCTACGCCTACCTGCTCTACCTCTCCTGGACCCCCGACACCATCCGCGCCATGTTCGCCAGCAAGTACTGGCTCC
CGGAGGTCAC----CACTCCTCACGTTCTCTCAATGTTGAATA-------------------CTTGCAGCAACACCAAGA
TTCAGTACCAGCATTGTGCATTGTCTGAATGTTCTTGCGCCTTAGCGAAAAGTATAAATAACATGTATGGTCCTTCAATC
TTGTGCGTAGTTGCCTGGCATTGTGAGGATGTTTGCGAGCGAGATGACCGTCGCCTCCGCCTGGATCCACCTCCTAGCCG
TCGACCTCTTCGCCGCAAGGTCAGTCGGCCATTTTTCGTTCATTTTTAGGTGTATGCGATTGTGAGGA-------GGTAG
ACACTCATGTTTGTGT-----TTTTTCCTTGATGGTGATGCAGGCAAGTGTACCAAGATGGCATCAAGAACAACATCGAG
ACCAGGCATTCGGTTTCGCTCTGCCTGCTCTTCTGCCCCATCGGGATCGCCGCTCACGCGCTCACTAAGGTACTGGCGGG
TTCCACAGGTCGATCACACTGACTGACGACCGATTGCGTGTAGGCAGGCTCCCATTGTTTAGATGGCTCAGATAGTGTGA
TTCAGATATATA--------------------------------------------------------------------
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--------------TGAATAAGATTGATTTGGTGCACCATTTGTTCCATATAGACATCACATTGATTATTTTCACCCAAT
CTATTGGAATTGGCTCGAGAAACTGAATCTACTCGCCATCATGGGTTCATAGAAAGGCTAGAACTGCTGATTTGATTTGT
ACTATCTGAGTCCTGTTATGAAGAAATGTACAAGTAATTTATATAGGATCTCGGATC-AGCAATG--ACACAAATGTGAA
GGAATCAAAGAAGATGAGGGAAACTAAAACATCGCTTTAAACTGCACTTGTGGATTTGT--TTATTGTTCAAGCAAATAG
ACTAATA--AGAGGGT---TTGTATTGCAACTTTACAACTAATGAATTTCTGAAAGCCGTGCCAAGGTTGCGTGACTCTT
TATATTACATAATG-GTAAACCTATTGAAGTGGAAATTGATC--AAAC-GGCGTGGCAGTGGCAGCTACAAT-----ACC
GATTTTTGTCCAG-CCC---GTACATATACACCTTTTGTAC-A--AGTATAGCTATTCTACTGCACGTATAACGGCATAG
TATCAG---CTTCTTTCTTGTCAAATATACGGTTGAGTATCAGCGCCAGTCTGACGCCGGCCTGCGCCAATCTCTTCTCC
ACAACCGGGTAGCGGGTGAAGTAATAATCATCTGCACTTCATAGGAGTTG---------CCAACCATTACCAT-------
--------------TAGGCAAAATGCATACTACTACTGTGTTGGTTTTTAGAAGTACTGCTGTGAACATTGGCACTG---
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---ACCTCCTAGGGTGATGTTCTGCACCACATCTTTGTAGGCGTAGTTGCACGACAGACTTATGCTCTCGATCGCGTAGC
TGCAAGGCGTGGGTTCGATA-----CCATATCATGTCAAATCTTGTGATC-AAATTAGTTGCATGAGT--CATGAACTGG
CAAAAAAAGTGCAAGTGT--TTGGTTAT-GAATCATACTCGTTTGCGCAGGTCGCCTTCTTGTTGGCGCAATTCTCCCAG
TGAGCGACATCGTCAGACCATCCCTCCTGCAGTTCACAGCAAGCATTAGAGGAAA-----CAAGGAAGATAAT---GGCA
GTATTTTGAAGTGTTTGAGAGTCTTGTGGTGCACTGACGGTGAGGTTCATCTGGAGGGCGGCCACCATGGTGTCGAGGCT
>chr3A_2468
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----------------------------------------------------------------TGAACTTCACTTGTGG
ATTGGCTATTATTGTTCAAG------------------------------------------------------------
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-------------------------------------------------------------------------CAAATAG
TCTATTATAGACGGTTGAATTATATTACAACTTCACAACAATTGAATTTCTGAGTGCTGTGCCAAGGCTTTGTGACTCT-
--TATTACAGAATG-GCAAACTTATTGAAGCGGTAATTTATGAGAAACTGGCGTGGCAACGGCAGCTACAAT-----ACC
TTG-------CAGCCCC---GTATGTATACACTTCATGTACAA--AGTATAGCTCTTTTACTGTACGTATAACGGCATGG
TATCTG---CTTTCTTCTTGTCAAATATACGGTTGAGTATCAGCGCGAGTCTGACGCCGGCCTGTGCTAGTCTCTTCTCC
ACGACCGGGTAGCGGGTGAAGTAATAATCATCTGCATTTCGGAAGAGTTGGGTAACCATCCATGCATTAGCGCTGCATGT
ACTCTAGCCAGGCA-----------------------------GAACTCACAAGCACTGCTGTGAATGTGGACACATAAT
CACG----------------------------------------------------------------------------
--TACCTCCGAGGGTAATGTTCTGCACCACATCCTTGTAGGCGTAGTTGCAGGACAAGTGTATGCTCTCGATCGCGTAGC
TGCAACGTGGA--TTCGG-----TGCCATACCATGTCAAATATTGTGATC-AAATTAGTTGCACACAGGACATGAACTG-
-AAAGAAAGTGCAAGTGT--TTGGATAT-GAATCCTACTCATTTGCGCAGGTCGCCCTTTTGTTGGCGCAGTTCTCCCAG
TGGCCGACATCGTCGGACCATCCTTCCTGCAGTTCACGGCTAGCATTAG-------------------------------
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>chr3D_2468
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----------------------------------------------------------------TGAACTTCACTTGTGG
ATTCGTTATTATTGTTCAAGCAAACAGTCTGTTATAGACGGTTGAATTATATTACAACATTACAAGAATTGAATTTCTAA
ATGTTGTGCCAAGGTTTTGTGACTCTTATTACAGAATGACAAACTTATTGAAGCGGTAGTTGATCAAAAACTGGTGTGGC
AACTGCAGATACAATTATACACCTTGCAGCCCGTATGTATACACTTCATGTATGAGTATATAGATCTTTTACTGTACATA
TAACGCCAGGGTGTCTCCTTTCTTCTTTTTGAATATACGGTAGAGTATGAACGCTAGTCTGACACCGGCCTGTGCTAGTC
TCTTCTCCACAACTGTGTGGCAGGTGAAGTAATAATCATCTGCATTTGAGAAGAGTTGGGCAACCATTAGCGCTGTACTC
TAGCCAGGCAGAATTCACAAGCACCGCTGTGAATGTAGACACATAATTACTAGGGGTGATGGATGGTGGATGGTGGTGAA
GGAGACTGGGGTGATCACAAGGGTCTTGTAGTTGCCGGCGGGGAAGAGCCGCCGAAGGTGCAAAACTCAGGGTGATCATA
TCGCCCAAAGGAAGGAACCTTGTCGTTGTTAGGGGAAACCCCTATCTGGCGACGAGACTCATGGGCATGACCTCGTTAAC
ACACATAACATGTGTTAAATAGAAAACCCTCATGATTACGTCCTCATTCTTGCCCGCGCAAATCATCAACTGAATTATCA
TCTAGCTCATGAGCACATAGATGGAATTTAAAAAGAAGGTAAATTTGATATAAGTCACGACAATTTTTTGGTTTTGAGAA
ATGACATTACTATTTTCATAAATTGAAACATGCCAGTGTAACTATTACATATTTAGAAACGTGCCATTCCATGTCATTTT
AGAACATTAGCCATCACACCCCTAAAAAAAGAACATTGACTATCACACACATGTATTTGAGCTCATATTTGTGTAGGGAT
GGTAATACCCACACTCCACACTTATTTGCTTCATTCGTCACCTATCTCCCTCGCAATAGCTCCTCTCCGCCACCTCCTCT
GCCGCCCAATGACGATGGCCCCTTCCTCCTCTTTTGCTCTCCTCCTCCATATCTGTTTCTTATGCCTGTCATCGCCTCCT
GGTTAGTTGCCACCCGCAAATCCCCATGTAACCCTGACCCAGCCAACAACCGAAAAGCAACATGGAGGCGACCACCATCG
CCAAGCCTTGTACTCTACCTCACCTGATGGCTATCTTTTCTGCTCATTCCCATGATGTCTATGGTATCAGTTCAACTAGG
AATTAGCAAACCAACAAACATTTACCAAAATATCTTTGAGACTTGGAAGCTCTACAAGCCTGTACAAAGATATTTAGATA
TATTGAAACAAACAAACATGCCACAATAGATAAGTGTCGCAACTTATTTCATGGAGAAATGTGATTATGTTTACCTTCAG
TTGCTTTGGTTAGATTTAGAGACAAACCTAGTCTGGCTATTGATTTTCTTAAATTGTGGCAAGATAAAACTCAAGTAGCA
TACTTTTCATGGAACACAATTGTATTTCACGTTGGAATTGTTTAACACAAGATAATGTATTTAATATTGGGCAACATAAG
TGGTCAATTATGCTAGTGAGTTCAAACAAGATAAATTGTATGTTAGTGGGCATATCACTAGAAAATAACATATATTTAGT
GTGAAAGTGAGTAATAGGAGGTAAAAATGCTTAGTATAAATAGGGAAGCAATGCGTGAGCGACCTCATGAATCTGATGTG
CAATTTCTAAGGATGGAGGGCCAGTGTATGCTTTCTCCGTCATTAGGCTAGCTCCCCTGATGTACCTATATGCATCATCT
AGATTAGAACCAATGCAACACTTTATCATGGCACAAGCGATAACATGTTGTGTTGATAGATTATTGATCTCATATGTTGC
CTTGATAGACTTTACTCCCACAACTACCCAGCAAGAACCGCATCTGGCATTGTAGCATGGATGGACAACATAAGAGAAAG
GAAGGACAGTGCACCAATCATCAGAATCAGAAAGTTCTCCATCAAAAAGGATATCCACATGCTCAGTTCTTTCGGACATA
CAGTAACAAATGATAGCTACCGCTCCACCGAATGCACATACCACAATAATATAGCGCAAAGTGCCACCACCGCCAGGTTT
GCCAGGTGTCTGCTTGTCTTGGCAAGCACATGCCTGAAACCACTCGCTCTGTAATACCTGCAACATCCTGTGGATGACAC
ACCTGCTAAACCTCACATAACCACTCTCCTCCCACCATGACCCCCAAGTATTCATCAGTTTTCAGTACTTCGCGCCATCG
CTATCAGTGTCATAGCTAATAACCAGCTGTGCAAATTGAATTTTATGAATGGATACATTTTATATAATATTTATACAATA
TCTCCATCGACACAAGCTATGTTGCTTAGATATTCCCTCAATTGCAATGTTTTATTGAGATTTTACTTGAAGGTATTTTT
GTGCGCCAAATATGTTACTTGGAGTTGATGTTTACTATGTTCAACTTGCTCTGTCCTAGTGTGTGCGAGTGTGTTGTGTT
TGGTGTGTTGGGTAGTCCTCTCCAAGATTGTCTGGAGCAATGATTGCATAAACTAACTGAGCACAAATCACGAAGAATCA
AATAAAATTAAGGGAACTCCAGATACACAGAGATGTCACTTATAGCAATTCCATTAATACACATGCACATTATGCAAAAT
ATAACACAAAGTTCTTCATTTCCACGGAAACTAGCGATATAAGAGTCCGACTGCAACCCACGCTCCACAACGAGTGAAGA
GCTCCTAAAACAGTGAACATTTTTAGAATTTAAAAATAGCTTTTTGAATTTCATATTTTTTTGAATTGGTAAACTTCTTT
TGAAATTCGCAAACATTTTTTCCAATTGATGAACTTTTTTTTATTCATGAAGACTTTTTGAATTCATGGACATTCTTGAA
TTGAAGAACTTCTTTTAGAATTCGTGAGCAATTATTGCGAACAATTTTTTAATTTATGAACATTTTTTTAAATTCATAAA
CATTTTTAAAACATGAAAAGTTTACGAAATCACGAATATTTTCAAATTGTTGATTTTTCTTTGAAATTTGGAATAATTTT
CAATTTCATGAAGATTTCTCAACTGGTGTGTTAGGCTGGTCACTTGTTTATGCACCCGTGGTTTCGATGGCTTAGATAGT
CTGATTTAGATATATGAATAAAATTGATTTGGTGCACCATTTGTTCCATATAGATTTCACATTGATTATTTCCACCCATT
CTATTGTAATTGGCTCAGGAAACTCGATGTACTCGCTACCATGGA-TCATAGAAGGT----TAGATCAGC--TGATTTGT
ACTATCTAAGTCCTGTTTCGAAGAAATGTACAACTAATTTATATCAGGTCACAGATA-AACAGCGACGCACAAATGTAAA
GGAACGAAAGAAGTTGTGAGAAAATAAAACATGGCTTTGAACTTCACTTGTGGATTGGTTCTTATTGTTCAAGCAAATAG
TCTGTTATAGACGGTTGAATTATATTACAACTTTACAACAATTGAATCTCTGAATGTTGTGCCAACGTTTTGTGACTCT-
--TATTACAGAATA-GCAAACTTATTGAAGCGGTAATTGATCAAAAACTGGCGTGGCAACGGCAGCTACAAT-----ACC
TTG-------CAGCCTGTATGTATGTATACACTTTTTGTA----TA-TATAGCTCTTTTACTGTACGTACAACGGCATGG
TATCTG---CTTTCTTCTTGTCGAATATACGGTTGAGTATCAGCGCCAGCCTGACGCCGGCCTGTGCTAGTCTCTTCTCC
ACGACCGGGTAGCGGGTGAAGTAATAATCATCTGCATTTGAGAAGAGTTGGG--------CAACCGTTAGCGC----TGT
ACTCTAGCCAGGCA-----------------------------GAATTCACAAGCACTGCTGTGAATGTAGACACATAAT
TACG----------------------------------------------------------------------------
--TACCTCCTAGGGTAATGTTCTGCACCACATCCTTGTATGCGTAGTTGCACGACAAGTGTATGCTCTCGATCGCGTAGC
TGCACGGCGGA--TTCGATTCGATGTCATACCGTGTCAGACTTTGTGATGAAAATCAGTA--GCAGGACA-ATGAAATG-
-AAGAAATCTGCGAGTGT--TGGGATAC-GAGTCCTACTCGTTTGCGCAGGTGGCCTTCTTATTGGCGCAGTTCTCCCAG
TGGCCGACATCGTCGGACCATCCTTCCTGCAGTTCACGGCCAGCATTAGAAGAAACACAAGAGGGAGAGAGCGGCCGGCA
GTATTTTGAGCTGCT-GATAGTTGGTGGTGTG-CTCACCGTGAGGTTCGTCTGGAGGGCGCCCACCATGGTGTCCAGGCT
>chr3B_2531
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-------------------------TACAACTTTACAAGAATTGAATTTCTGAATGCTGTGCCAAGGCTTTGTGACTCT-
--TATTACAGAATG-GCAAACTTATTGAAGCGGTAATTGATGAAAAACTGGCGTGGCAACGGCAGCTACAATTATAGACC
TTG-------CAG-CCC---GTATGTATACACTTTATGCACAAGTA-TATAGCTCTTTTACTGTACGTATAACGGCATGG
TGTCTG---CTTTCTTCTTGTCGAATATACGGTTGAGTATGAGCGCCAGCCTGACGCCGGCCTGTGCTAGTCTCTTCTCC
ACGACCGGGTAGCGGGTGAAGTAATAATCATCTGCATTTGAGAAGAGTTGGG--------CAACCATTAGCGCTGTA---
-------CCAGGCA-----------------------------GAATTCACGAGCACTGCTGTGAATGTAGACACATAAT
CTTGTTTCAAAAGAAGAAGAAGAAGAATGTAGACACACAATCTTGTTTCAAAAAAAGAAGAAGAAGAATGTAGACACATA
ATTACCTCCTAGGGTAATGTTCTGCACCACATCCTTGTAGGCGTAGTTGCACGACAGGTGTATGCTCTCGATCGCGTAGC
TGCACGTACAGCG---GATTCGATGTCATACCGTGTCAGACCTTGTGATGAAAATTAGTTGCGCAAGACA-ATGAAATG-
-AAGAAATCTGCAAGTGT--TGGGATAT-GAGTCTTACTCGTTTGCGCAGGTCGCCTTTTTGTTGGCGCAGTTCTCCCAG
TGACCGACATCGTCGGACCATCCCTCCTACAATTCATATCATTAGAACACA-----------------------------
--------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--------------------------
---S---------------------------------------------------S----------S-------------
---------------------SS--S-------------------------------------------S---S-----S
------SSSSSS------S-------------------------------------------------------------
----------------S------------S------S-------S-----S-------------S---S---S------S
SS--SS-S-SSSS-S-----------------------------------------------------------------
--------------------------------------------S-S----SSSSSS-------S-S-----S----SSS
SSSSSSSSS-----------------S-----------------------------------------------------
-S-S------S---S-------------------------------------S---------------------------
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------
-----------------------------------------------------------S-S-------S-SSSSS----
----------------------------S------------------S--------------------------------
------------------------------S-------------------------S------------------S----
---------------------------------------------S--SS-----------------------S------
-S---S------------------------------------S--S---------------S-S-S---SSS--------
------------------------------------------------------S-S-SS-S-S-SS-S-S-S----SSS
-----------------S---------------S---S----------------------------------------S-
------S----------SS-------------------------------------------------------------
-----------------------------------------------------------SSSS-S-S-SSSSSS-SSSSS
SSSSSS--S-SSSSSSSSSSSSSSSS------------------SSSS--------------------------------
-----------------------------------------------------------------S--------------
---------------------------------------------------------------------S----------
------------SS--S-----------------------S----------------------SS-S-------------
--------------------S---------------------------------------------S-------------
-S-------------------------------------------------S----------------------------
-------------------------S------S-------SS--------------S-----------SSSSSSS-----
S-----------SSS---------S-S--S-------------------------S------------------------
-----------------------------------------S-----S--------S-----------------------
-------------S-S----------------------------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S------S--
-----S--------------------------------------------------------------------------
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---------------------------------------------------------------------------S----
-SS-SS-SS--------------------------------S----------------S----------------S----
-----------S--S----------S--------------------S---------------------------------
-----------------------------SS---------------------------------------------S---
----------------------------S-------------SS--------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------S-----------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------S----------
-----------------------------S---------------S---------------S------------------
--S-----SS-S-SSS-SSS-----------------------------------------------------S------
--------------------------------S------------------SS-SSS---SSSSSSS-------------
-------S------S-S-S---------------S---S-----------------S--S----------------S---
>forward_560
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------------------------------------------------------------ATGGATCGTGAAGCTGGACG
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>reverse_1761
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TTTTCACCCGGTACACGAGG------------------------------------------------------------
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>forward_568
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--------------------------------------------------------------------TGAAGCTGGACG
TGGTTGAG------------------------------------------------------------------------
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>reverse_2641
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TGGAATTGGCTCGAGCAACT------------------------------------------------------------
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