>input_sequence_54942
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--------------------------------------------------ATGGATCCCTTTCACGGCATTGTGAAAGAG
GAGGAATTCGACTTCGCCGGAGCTGCAGCGGATGGCTACTCGCCGTCTTCCTGGGGCTCATCCCCGTCTTCCTGGGGCTC
TTCCCAATCTTCCTGGGCCGGCGGCGGCGCCTTGGCAGAGCTGCCGCGGCCGATGGACGGCCTCGGCGAGGCGGGCCCCA
CGCCCTTCCTGAACAAGACGTACGAGGTGGTGGACGACCACAGCACGGACACCATCGTGTCGTGGGGCGTCGCCGGGAAC
AGCTTCGTGGTGTGGGACGCCCACGCCTTCTCCATGGTGCTCCTCCCCCGCTACTTCAAGCACTGCAACTTCTCCAGCTT
CGTCCGCCAGCTCAACACCTATGTAAGTTTCTGCCGATCAGTGCACGCATTGTTCTTGCCGTACCAGTGTCCATCCATCC
ATCTATCCATGGCGATTGATTGGCAAAATGTGATGCAATGTAGCTCGAACGGAACCTAATTGGTATTGTTCCAGAAAAAC
TCAACCCGATTGGGTTGTTTGTGTTGCATCGCAGGGGTTCAGGAAGGTTGATCCGGACAGGTGGGAGTTCGCGGCGGAGG
GGTTCCTGCGGGGCCAGAAGGAGCTGCTGAAGACGATCAGGCGCCGGCGGCCTCAGTCGTCGCCGTCTGGCACGCCGGCG
CTGCTGCAGCAGCAGCAGCAGGGCCAGCAGGGGGCGTGCCTGGAGGTGGGGCATTTCGGGCCCGAGGGCGAGGTGCAGCG
GCTGCAGCGCGACAAGGGCACCCTGATCGCGGAGGTGGTGAAGCTGCGGCAGGAGCAGCAGGCGACGCGAGCGCAGATGC
AGGAGATGGAGGCGCGCCTCGCCGCCACGGAGCAGAAGCAGCAGCAGATGACGGTGTTCCTGGCGCGCGCCATGAAGAGC
CCCAGCTTCCTCCAGATGCTGGTGCAGCGGCAGGACCAGAGCCGGCGGAAGGAGCTCGCGGAGGCGCTCCTCTCCAAGAA
GCGCGGCCGCCCCATCGAGTACCTCCTCCCCCGCAACGGCGAGACCAGCAGCGCCGCAAGCTACAGCGCCGCGGCGCGAG
GCTACGGCCCTGGTCTCGCCGACGGCAGTGACGGCAGGCGCGCGGACGGCGAGGACACGGAGAGCTTCTGGAAGGAGCTG
CTGAGCCTGGGCCTGGAGGAGAGGCATCGGGAGGCTGGCGGGGGCGGC---GGGGAGGCGAGCGGCGCCGAGGTGGACGA
CGACGTGGACGATGAGGTGGACGAGCTGGTGCAGAGCCTCTACCACCTCAGCCCGAACCGGCCCCACAGCCACCAGTGA-
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>chr5D_1_TraesCS5D01G393200
AAAGCGCGTGCGTACGCCCTCCTCACCCGGGGCGTCGACAGCGAGGCCGCCGACCTCCCCGGGGGGAAATATCCCGGTCG
ACCACGGCCACTGTAGACGCATCGCATCACGAGGGCTCGCCACGCGGCCAGCCAACTTGGCGCGCTTTCCGCGCGGAGGC
GGCGGTCAATGGCCGCCCGGTCCCGCCCGGCTGGCGCAAAGCGACGCCGGCAACCTGCAATAAGATAAGCGGCTACTTGT
TCGACCCTTCCAGAACCATCGCCCCCCTCCGGGCCTTCCAGAACGCTCCCCCGCCACGTCACAGGATA------AGCCCC
TCGGATGGTTCCAATCCTTCCAGAACCGTCTCGATCTTTCGGAATTGGAAGCCCGGGTGGGGTTGGTAC-GGGCTGTATA
AATGGGCGGTGACCGTGCGCCTCTTCTGACGAGCTCGCTCAAGCGCCTCAAGTACGAAGCCTAGAGGGATAGTACTGTAC
TTTCCTCTCCCTTCTTCTCCGTCTGCGGTCTGGTCTGGTCTGCTCTGCTTCTTCTCTCTCCGTCCTTGTTGCTTCTCTCT
TCTTGTACTCTCCGATTTTACATTTGGCCTCCTCCAACCCTCCTCTTGCAGCTGCTTCTGGGCGTCAATGGGGAGCTCTG
CCATTTTAGGAGAAGCGGAGATCCCCTGAATTGGTCAAT--CAGCATTGTTAGTTCAGACGATTGCTCAAACTTTGACTA
CTACAGATTCTTTTCCCCTTTATTTTGCAACGACCTTTGGGTAGCCCGTAATTGATTGCTAGTCTTGTGGTTCTGAATTT
TGTTTTTGGTATTCTGATTCAGAAACTTTCGGGTTTGCTTCTTTGGAGTCTGGGGGGCGACATT-TTTTTTCTAGCAAAG
ATCGCCTTCGGTTAATTTTGGCCGGTTCTTGATTCTTTCTGGACCTCGTTTTCCTTGGTCCGATCGATTACCGGTGCTCA
GTAATCCCCTCTGTCCAATTTTTCTCTAGAGTTTGTTTGGTCGTTTGATCATGGATCCCTTTCACGGCATTGTGAAAGAG
GAGGAATTCGACTTCGCCGGAGCTGCAGCGGATGGCTACTCGCCGTCTTCCTGGGGCTCATCCCCGTCTTCCTGGGGCTC
TTCCCAATCTTCCTGGGCCGGCGGCGGCGCCTTGGCAGAGCTGCCGCGGCCGATGGACGGCCTCGGCGAGGCGGGCCCCA
CGCCCTTCCTGAACAAGACGTACGAGGTGGTGGACGACCACAGCACGGACACCATCGTGTCGTGGGGCGTCGCCGGGAAC
AGCTTCGTGGTGTGGGACGCCCACGCCTTCTCCATGGTGCTCCTCCCCCGCTACTTCAAGCACTGCAACTTCTCCAGCTT
CGTCCGCCAGCTCAACACCTATGTAAGTTTCTGCCGATCAGTGCACGCATTGTTCTTGCCGTACCAGTGTCCATCCATCC
ATCTATCCATGGCGATTGATTGGCAAAATGTGATGCAATGTAGCTCGAACGGAACCTAATTGGTATTGTTCCAGAAAAAC
TCAACCCGATTGGGTTGTTTGTGTTGCATCGCAGGGGTTCAGGAAGGTTGATCCGGACAGGTGGGAGTTCGCGGCGGAGG
GGTTCCTGCGGGGCCAGAAGGAGCTGCTGAAGACGATCAGGCGCCGGCGGCCTCAGTCGTCGCCGTCTGGCACGCCGGCG
CTGCTGCAGCAGCAGCAGCAGGGCCAGCAGGGGGCGTGCCTGGAGGTGGGGCATTTCGGGCCCGAGGGCGAGGTGCAGCG
GCTGCAGCGCGACAAGGGCACCCTGATCGCGGAGGTGGTGAAGCTGCGGCAGGAGCAGCAGGCGACGCGAGCGCAGATGC
AGGAGATGGAGGCGCGCCTCGCCGCCACGGAGCAGAAGCAGCAGCAGATGACGGTGTTCCTGGCGCGCGCCATGAAGAGC
CCCAGCTTCCTCCAGATGCTGGTGCAGCGGCAGGACCAGAGCCGGCGGAAGGAGCTCGCGGAGGCGCTCCTCTCCAAGAA
GCGCGGCCGCCCCATCGAGTACCTCCTCCCCCGCAACGGCGAGACCAGCAGCGCCGCAAGCTACAGCGCCGCGGCGCGAG
GCTACGGCCCTGGTCTCGCCGACGGCAGTGACGGCAGGCGCGCGGACGGCGAGGACACGGAGAGCTTCTGGAAGGAGCTG
CTGAGCCTGGGCCTGGAGGAGAGGCATCGGGAGGCTGGCGGGGGCGGC---GGGGAGGCGAGCGGCGCCGAGGTGGACGA
CGACGTGGACGATGAGGTGGACGAGCTGGTGCAGAGCCTCTACCACCTCAGCCCGAACCGGCCCCACAGCCACCAGTGAA
GGAAGAACAGAAGACAGAAGGTTCTAGAGCGAGAAATATCTGCTGCCGCTTGGAGAACAACGTAGGGCCGCAGCCTGACA
AGTGACAACCCCAGCAGTGAGCGAAAGAAGATAAGAAGGTTCTAGAACAAGAAGTTTCCGCTGGAGAACGTCGAACGTCG
TGGGGTAGACCGTAGGCGTAGTGGTGGTGGTGGTAGCGGTAGTGCTGCCTCCATGCCCCCATGGGCGT------TGGGGG
CTGGTCTGCTTTGTTCATTTTCTATTGCTAGTT---GTAGTACCTGACATGTTGTCGGGGCCCCGCGGCCTGCATGCGCA
AGTTGCCCGAAACAGAAAGGGGCCAGCGCCTTTTG-CCTGGCGTGGTGGAATAATGCTCCGAGGCTTTACCGGATTAAGT
ACTCCAAGTTGGACGTAGATCGATCCATCCATCCTGGTTCGTTCCCGACCGACGAGGCCATGGAAGGGGCAAAGGCAAAG
CGAGTGCTAGTAGATACTCCCTCCGTTTTAAAATAGATGATTCAACTTTATACTACTAACTTTACAAAGTTAGTATAAAG
TTGGGTCATCTATTTTGGAATGGAGAGAGTAGATTGCAGCAGAAGTTACACGAAGCTAGTGGAGCTCGCTCGGCGTTTTC
ATGGTCGTACGGGAAGAAAGTCTGGAATGAAAAGGAAAGGCTGGCTTGTCATCGTCAGCGGGTTTGATTTTCCCCAT---
-GCGCGCACCACACCGGCGGTTCTCGTTCAGACTGCGCCGCTGCCCCGTTCA--TCCTCCCTTTCACCC-------ACCC
CTCTCCCGCTCGATTCTACTGGGTCCGCGTTGCTGTCGGGACTCCGGAGGTGTCACGCTGCGTCTACTTTGTTTGGATGG
ATGCAGTGGCGGGTAGG-----TTGGATTTGGCGAGCTTTCACCCACCCCTCTCTCTCCG---GGGGCCGCGTTAACGTC
TAGGCCACTGTTTCGTTGTACCATTGCTGATACCACGGCAACAGACTAGTACGTCGGAAAGACCCAAGTG
>chr5A_25
------------------------ACCCCGGGCGTCGACAGCGAGGCCGCCGACCTCCCCGGGGGGAAATATCCCGGTCG
ACCACGGCCACTGTAGGCGCATCGCGTCACGAGGGCGCGCCACGCGGCCAGCCAACTTGGCGCGCTTTCCGCGCGGAGGC
GGCGGTCAATGGCCGCCCGGTCCCGCCCGGCTGGCGCAAAGCGACGCCGGCAGCCTGCAATAAGATAAGCGGCTACTTGT
TCGAGCCTTCCAGAACCATCGCCCCGCTCCGGGCCTTCCAGAACTCTCCCCGGCCACGTCACACAGGATAAGCCAGCCCC
GGGGATGGTTCCAATCCTTCCAGAACCGTCTCGATCTTTCGGAATTGGAAGCCCCGGCGGGTTGGTACGTGGGCTGTATA
AATGGGCGGTGACCGTGCGCCTCTTCTGACGAGCTCGCTCAAGCGCCTCAAGTACGAAGCGTGAAGGGATAGTACTGTAC
TTTCCTCTCCCTTCTTCTCCGTCCCC-----GGTCTGGTCTGGTCTGCTTCTTCTCTCTCCGTCCTTGTTCCTTCTCTCT
TCTTGTACTCTCCGATTTTACATTTGCCCTCCTCCGACCCTCCTCTTGCAGCTGCTTCCGGGCGTCAATGGGGAGCTCTG
CCATTTTAGGAGGAGCGGAGATCCCCTGAATTGGTCAACCACAGCATTGTTAGTTCGGACGATTGCTCAAACTTTGACTA
CTGCAGATTCTTTTCCCCTTCATTTTGCAACCACCTTCGGGTAGCCCCTGATTGATTGCTAATCTTGCGGTTCTGAATTT
TGTTTTTGGTATTTTGATTCAGAAACTTTCGGGTTTGGTTCTTTGGAGTCTGGAGGAGGGCGACATTTTCTCTAGCGAAG
ATCGCCTTCTGTTAA-TTTGGCCGGTTCTTGATTCTTTCTGGACCTCGTTTTCCTTGGTCCGATCGATCACCGGTGCTCA
GTAATCCCCTCTGTCCAATTTTTCTCTAGAGTTTGTTTGGTCGTTTGATCATGGACCCCTTTCACGGCATTGTGAAAGAG
GAGGAATTTGACTTCGCCGGAGGTGCTGCTGATGGATACTCGCCGTCTTCGTGGGGCTCATCCCCGTCTTCCTGGGGCTC
TTCCCCATCTTCGTGGGCCGGCGACGGCGCCTTGGCGGAGCTGCCGCGGCCGATGGACGGCCTCGGCGAGGCCTGCCCTA
CCCCGTTCCTGAACAAGACGTACGAGGTGGTGGACGACCACAGCACGGACACCATCGTGTCATGGGGCGTCGCCGGGAAC
ACCTTCGTGGTGTGGGACGCCCACGCCTTCTCCATGGTGCTCCTCCCCCGCTACTTCAAGCACAGCAACTTCTCCAGCTT
CGTCCGCCAGCTCAACACCTATGTAAGTTTCTGCCGATTGGTGTACGCATTGTTCTTGCTGTACCAGTATCCATCCATCC
ATCTATCCATGGCGATTGCTTGGCAAAATGTGATGCAATGTAATTCGAACCGAACCTGATTGGTTTTGTTCCAGAAAAAC
TCAACCCGATTGGGTCGTTTGTGTTGCATCGCAGGGGTTCAGGAAGGTTGATCCGGACAGGTGGGAGTTCGCGGCGGAGG
GGTTCCTGCGGGGGCAGAAGGAGCTGCTGAAGACGATCAGGCGGCGCCGGCCTCAGTCGTCGCCGGCGGGCACGCCGGCG
CTGCTGCAGCAGGGGCAA------CAGCAGGGTGCGTGCCTGGAGGTGGGGCATTTCGGGCCCGAGGGCAAGGTGCAGCG
GCTGCAGCGCGACAAGGGCACCCTGATCGCGGAGGTGGTGAAGCTGCGGCAGGAGCAGCAGGCGACGCGCGCGCAGATGC
AGGAGATGGAGGCGCGCCTGGCCGCCACGGAGCAGAAGCAGCAGCAGATGACGGTGTTCCTGGCGCGCGCCATGAAGAGC
CCCAGCTTCCTGCAGATGCTGGTGGAGCGGCAGGACCAGAGCCGGCGGAAGGAGCTCGCGGAGGCGCTCCTCTCCAAGAA
GCGCGGCCGCCCCATCGAGTACCTCCTCCCCCGCAACGGCGAGAGC------------AGCTACGGCGCCCCGGCGCGAG
GCTACGGCCCCGGGCTCGCCGACGGCGGCGAGGGCAGGCGCGCGGACGGCGAGGACACGGAGAGCTTCTGGAAGGAGCTG
CTGAGCCTGGGCCTGGAGGAGAGGCATCGGGAGGCAGGCGGGGGCGGGGGAGGGGAGGCGAGCGGCGCCGAGGTGGACGA
CGACGTGGACGATGAGGTGGACGAGCTGGTGCAGAGCCTCTACCACCTCAGCCCCAACCGGCCCCGCAGCTACCAGTGAA
GGAACAACG-------GAAGGTTCTAGAGCGAGAAATATCTGCTGCCGCTCGGAGAACAACGCGGGGCCGCAGCCTGACA
GCCCCAG---CCAGCAGTGAGCGAAAGAAGAT--GAAGGTTCTAGAACAAGAAGTTTCCGCTGGAGAACGTCGAACGCCG
TGGGGTAGACCGTAGGCGTAGTGGTAGCGGTAGCGGTGGTG-------CTCCATGCCCCCATGGGCGTGGGCGTTGGGGG
TTGGTCTGCTTTGCTCATTTTCTATTGCTAGTTGTAGTAGTACCTGACATGTTGTCGGGGCCCCGCGGCCTGCATGCGCA
AGTTGCCCGAAACAGAAAGGGGCCAGCGCCTTTTGGCCTGGCGTGCTGGAATAATGCTCCGAGGCTTTGCCGGATTAAGT
ACTCCAAGTTGGACGTAGATCCATCGACCCACGAGGCAAA---------------------------GGCAAAGCCAAAG
CGAGTGCTAGAAGAT-----------------------------------------------------------------
----------------------------------TGCAGCAGAAGTTACACGAAGCTAGTGGAGCTCGCTCGGCGTTTTC
ATGGTCGTGCGGGAAGAAAGTCTGGAATGAAAAGGAAAGGCTAGCTCGTCATCCTCAGTGGATTTGATATTCTTTTCCGA
AGCGCGCACCACACCGGGGATTCTCGTTCACACTGCGCCGCTACCCGGCCCCGTTCCTCCCTTTCATCTAGTACGTACCT
CTCTCCCGCTCGGTTCTACTGGGTC-GCGTTGCTGTCGGGACTCCGGGGGTGCCACGGTGCGTCTAC----TTTGTTCGG
ATGCAGTGGTGGGTGGGTAGGTTTGGATTTGGCCAGCTTCATTCGTCCGTGTGCTTTCGTTTCGGGGTTGCGTTAACGTC
TAGGCCACTGTTTGCTTGTACCATTGCTGATGCCACGGCAATAGACT-----GTCGAAAAGACCCAAGTG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSS----S---------------------------------------------------
----------------S--------S----------S-------------------------------------------
----------------------------------------------------S---------------------------
----S--------------------S------------------S------S-----------SSSS-------------
SS----------------------------------------------------S--S---S-S-SSSS-----------
------------------------------------------------------------S-SS----------------
-----------------------SS-SSSSS-----------S---------------------------S---------
--------------------------S--------S----------------------S---------------------
------------S-------------------------S-----------------S-----------------------
--S-----------------S----------S-----S---------S-S-----------S-----S------------
-------------S-----------------------S---------------S--SS-S-SSS-----S------S---
---------S-----S----------------------------------------------------S-----------
-------------------------------------------------------S------------------------
--------S-------------S---S--S-----S--------------S-----------------------------
-----S------S----------S------------S-----------------------------------SS----S-
-S--S--------------------------------------------------------S------------------
-S-------------------------------------------------------------S----------------
--------------------------------------SS---S---------------S--------S-----------
------------------S-----------------------SS------S------S------S---------------
---------------S----------------------------------------------------------------
-------------S-----------------------------S--S------------------S-S------------
------------SS---SSSSSSS--------S------------------------------------S----------
---------------------------------------------------------------------S----------
-------------------S------------------------------------------------------------
-----------S------------S-------------------------------------------------------
--------------------------------------------S-SSSSSSSSSSSS------S-----S---------
----------S--S------------S-S--S------------------------------------------------
-----------------------------------S-----------S--------------------------------
------------------------------------------------------S----------S----S---------
----S---SSSSSSSS----------------------------------S-----------SS----------------
SSSSSSSSSS----------------------SS-------------------------------------------S--
-------------------------S-S---S-SS-S---SSSSSSSS--------------------------------
S------------S------------------------------------------------------------------
---------------------------------------------S----------------------S-----------
---------------------S---S-S---SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S-----
----------S----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------------
--------S---------------------------------S---S------S----S--S------S---SSSSS---
-----------------S-S----------S-----------S---S-SS-S--------------S-S----------S
------------S------------S---------------------S----S----S---------SSSS----SSS--
---------S----S------------------S-----SSSS-SS--SSSSS--S--SS-------SS-----------
-------------SS----------------S---------S-----SSSSS----S-------------
>forward_619
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---------------------------------------CTCCTCTTGCAGCTGCTTCT---------------------
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>reverse_1536
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---------------TGTTTGTGTTGCATCGCAGG---------------------------------------------
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>forward_1420
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-----------------------------------------TGCACGCATTGTTCTTGCC--------------------
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>reverse_3173
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----------------------------------------------------TCACGCTGCGTCTACTTTGT--------
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