>input_sequence_54938
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------------------------------------------------------------------------------AT
ATATAGCGCCACCACCCCCCGCTCCAAGCTCCAAGAACTCCACGCACACTCCCAGCTCACTCGCAGACGCACTGCCCGGT
GCACCTTCCTCGCTCTAGCCAGCCGCCAG-------CCAAGCGAGCTAGCCCGGTAGGCCGTGCGGTGCTCACTGTTGCC
G------CGCCATGTCGAGCAAGCCGTCGTCCAGGAGGGGCAGCTTCGCGCTGCGGCAGCCGCCGGTGGTGGACGTCGGC
TGCAACTGCCGCCGCCCGAAGCTCTTCTCCAGCCTCCTCTCCTCGTCCTCCCTGCCGTTCCGCGGC---CGGGGCGGCAA
GCCCAAGTCGCCCAACGCCTCCTCCACGTCCACCACCACGGCGTTCACGGCCACGACGCTCGGCGGCCGCAGCGGCACCA
CGGCCACCTCCGCCGACTCCGCCTCCTGGGGCCCCGCGTCCTTCACCAACAACTCGCTGTACGAGGACCCG---GCGGCC
GCGCGCCGCCGCGGCCAGGATGAGCCGGAGCAGGAGACGCGGCGCCGGCGGAGGCAGCGGCGGCGTCGCAGGCGCGCCGC
CTGGGACGGCGTCGGCGGCGGCGCTGGGCACGGGGAGCAGGAGGCGGAGGCGCACGGGCGCGTGGCGCGGGAGAGCGTGC
CGGTGGCGGTGGAGTCGGCGGAGCCGTACGAGGACTTCCGGGAGTCGATGGTGCAGATGGTGGTGGAGAAGGAGATCTAC
GCGTGGGACGACCTCAACGACCTGCTCACCCAGTTCCTCACCCTCAACTCGCCGCGCCACCACCCGCTCATCCTCCACGC
CTTCGCCGACCTCTGGACCCGCAACGGCCTCTTCTCCCCTCCCTCGCCGTGCCAGTTCTAGC----TACCCTCCTACCAC
TAGCTAAAAGCTACTGTAGCTAGCTGCCGCCGGTCAGCATTACACCGCCACGGCGCCATGCACGCACGCACCCACCC---
---------------CAGTATTACTCCTGTTTACTATTGCTTACTGTAACCATTAGTGTTGTAATTCCTAC---TAGCAC
CTGATCGATCGTCAGTCTGTTAACTAGCT----AGCTACCCGTGGTACTAGCTCCTCCATGTCCATCACTCCATGGCCGG
CCGGGGGAGGTTATTAATGGAGATCCCGGCCG------GCGAGATGGGTCTAGTCTTGAGCTCAAGC-------------
----TAAGCATGATGGTGTAATCCAAATCAATGTAACCGTTATT-------CATGTAATGTAATGATGCGTGCGCGTGGC
GCCATGGCGTTGTAATGATATAAGTAACTGTTTG--------TGTTTGTGCATCAAGTATGTGC---------ACTAGTT
ATGCAATCGTTCACTGCTCAACCTTTTCTTTTTTGTTGA-----------------------------------------
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>chr3D_1_TraesCS3D01G368500
ATTTCAATTCGTTTGATTCGGTATAT-----GTACAGAAGTCCAGTAAAATATTCTGGGAGGGTATTAGATGCAG-TTTT
ATTGGCACTTCACGTGTCCATTCGATCAGAAAAAG-GGTTT-ATTTCTGGCGGCTATGTACTGATCGTACGTGCA---AC
CTGCAACAAGGCCTGGTTAGGTTTTTTGTCAGCTAGCC----AGCCAGTGGCAGAAAGTAAATAATTCTTTAAAGCAGCC
GAGGAGGGGAAGAATACATATATAGCAGAATAACGCCGATATGATGCTATAGACCTATTTTACT---TTAAAAAAGAGCC
GATTGTTCAGCCAAGTACTGC---TGTGATTTTTTGTTTTCTCAAGGAAACGGTACTGTGGTGGCTTGGGAAAAGAAAAG
ATCTGTTGAACAGAGACTCGACAGAGAAAGATTGGCGCTCCGCTGGGCCAGCAGCCAGAGCCCGGCCAGCAGCATGGCCA
GCTTGTCCTCACATGCATACAGTCGGTCAACTCAGCAGCAGACTTTCGTCACATTACCAAAGCCGTGACAAGATCTCATT
TTTTACCGCCCGAACCACACCATGCCCTCCTGCCGTCCGACGTACCCCCT-----GCTCTGAACTCGCTGCGCAAAAATT
AACCGCCCACTGTCCAGTCACACTCACAGGGAGCCATTGATGCATGCAGCCGCTGACACGATCCTCCTCCCC--------
-TCCCAGGATCCAATCTGGATGAGTAGTATCTTGCGGCCATGCACTGATGACTGATCGACGACGCTCACACGCATAGCAA
TGGCGTCGTAGCCTGCTGCCTGCTGCCGCATTCCACACGTACACGCCTGTTTCTCGCGGCATGCATTTTCACTTGCACGC
TCCCGGCTCGTTTTCACCCAGGCCGACGTATAATTATCCTCTTCACATGCCCG---TCCTCCTCCTCCCCGGCCTCGCCT
CACTATTCATGTCACGCTCTCTTTACTCGCCCTCGCCATTTACTGACCTCACTCACGCTCTCACATGGCGCCCCATTAAT
ATATAGCGCCACCACCCCCCGCTCCAAGCTCCAAGAACTCCACGCACACTCCCAGCTCACTCGCAGACGCACTGCCCGGT
GCACCTTCCTCGCTCTAGCCAGCCGCCAG-------CCAAGCGAGCTAGCCCGGTAGGCCGTGCGGTGCTCACTGTTGCC
G------CGCCATGTCGAGCAAGCCGTCGTCCAGGAGGGGCAGCTTCGCGCTGCGGCAGCCGCCGGTGGTGGACGTCGGC
TGCAACTGCCGCCGCCCGAAGCTCTTCTCCAGCCTCCTCTCCTCGTCCTCCCTGCCGTTCCGCGGC---CGGGGCGGCAA
GCCCAAGTCGCCCAACGCCTCCTCCACGTCCACCACCACGGCGTTCACGGCCACGACGCTCGGCGGCCGCAGCGGCACCA
CGGCCACCTCCGCCGACTCCGCCTCCTGGGGCCCCGCGTCCTTCACCAACAACTCGCTGTACGAGGACCCG---GCGGCC
GCGCGCCGCCGCGGCCAGGATGAGCCGGAGCAGGAGACGCGGCGCCGGCGGAGGCAGCGGCGGCGTCGCAGGCGCGCCGC
CTGGGACGGCGTCGGCGGCGGCGCTGGGCACGGGGAGCAGGAGGCGGAGGCGCACGGGCGCGTGGCGCGGGAGAGCGTGC
CGGTGGCGGTGGAGTCGGCGGAGCCGTACGAGGACTTCCGGGAGTCGATGGTGCAGATGGTGGTGGAGAAGGAGATCTAC
GCGTGGGACGACCTCAACGACCTGCTCACCCAGTTCCTCACCCTCAACTCGCCGCGCCACCACCCGCTCATCCTCCACGC
CTTCGCCGACCTCTGGACCCGCAACGGCCTCTTCTCCCCTCCCTCGCCGTGCCAGTTCTAGC----TACCCTCCTACCAC
TAGCTAAAAGCTACTGTAGCTAGCTGCCGCCGGTCAGCATTACACCGCCACGGCGCCATGCACGCACGCACCCACCC---
---------------CAGTATTACTCCTGTTTACTATTGCTTACTGTAACCATTAGTGTTGTAATTCCTAC---TAGCAC
CTGATCGATCGTCAGTCTGTTAACTAGCT----AGCTACCCGTGGTACTAGCTCCTCCATGTCCATCACTCCATGGCCGG
CCGGGGGAGGTTATTAATGGAGATCCCGGCCG------GCGAGATGGGTCTAGTCTTGAGCTCAAGC-------------
----TAAGCATGATGGTGTAATCCAAATCAATGTAACCGTTATT-------CATGTAATGTAATGATGCGTGCGCGTGGC
GCCATGGCGTTGTAATGATATAAGTAACTGTTTG--------TGTTTGTGCATCAAGTATGTGC---------ACTAGTT
ATGCAATCGTTCACTGCTCAACCTTTTCTTTTTTGTTGAAGAAACATATTGTCACTCATCTTTCACTGTTTTACCGACA-
-TGCCACTGGACC----GCTGGCCATTTTTACCGCTGCTTTTGTTGCGATTCATTTGCTCACCGTCCTGTCAACTCGTGA
AATATATGTACCACT----------------CCATGTTGTCACGTCCAATCCCTTTTCGTTCTCGTGCATG----CGTAC
GTGCGTAGTGCATGGGTTGGTGCGACCGTGCGCGCGCGCGCGA----CGTGAACCAGGTGCAAAAGCTGCTGCGCCCGAG
GCTGATTTGTGTTCTCGCTGGGTCCGTTGGCTGGCTCCACCCCTCCGGCGCCCAGTTGTTTCACTGTGCGGGCGAGCTGA
CGGGTGCAACGACAAGCAGCTGTGCCGCTGTTGGGGCCTGGATGAGATTGGAGTGGATGGCAGGCGTGCGAATCAACGGC
TGGATCTCGCCACAGTGCCCTACCACTGTGTCGGCTTCATTGCGTCGGGGCCTCC-------GGCCTGCTGCCCAAAAGG
TCGACGGAGCCACAGTGCCGGCTCGTCTCAGCGTATTCATTGGGGGTAAATTTTCACTGTA------------CGTCTAC
GTGTACGTCTTCTGTTGCAGGATA--------------------------ATAATACTGTTCCTGCAGGCTGGTGC----
CAACCACTCCTGGA-----TCGGTCGGTCGACGATCGATTCATTAGAGGTTCTGATTTTATGGCGCCACAGGAACCGAAC
ACTTTACTAGTAGCAAGTGGCAAGGCTAGCTACAAGATACGTACGTGCTATGGGTGTCAAATTGCATGATCGTATTCATT
GGCCGTCCATAAATTTAGAGACCAAAGCCGGGCGCCAAAATGCTTTGATGCTTCGGATTCAAGCGAGAGCAATTTGA--T
TGATTGTTCAGTACGCTAGACCAAACTTTCGACCCCCT-GTTTCAAAAAATGAGGTCAAGTTAGCAACAGCAGTAGCAGT
ACC-------TACCGTGGTACTCAGAGTACATGTAGTCGTAC----------CGCGGCAGTAACAGGACGCGACGCAACT
GAATCCCCTTCCCCCGCCTCGTC
>chr3B_1
ATTTCAATTCATTTGACTCAGTATAT-----GTACAGACGTCCAGTAAAATATGCTGGGAGAGTATTAGATGCAG-TTTA
TTTGGCAGTTCACGTTTCCATTCGATCAAAAAAAG-GGTTTTATTTCCGGCGGCTATGTACTGATCGTACGTGCA---AC
CTGCAACAAGGCCTGGTTAGGTTTTTTGTCAGCTAGCT----AGCCAGTGGCAGAAAGTAATTAATTCTTTAAAGCGGCC
GGGGAGGGGAAGAATACATATATAGCAGAATAACGCTGATATGATGCTATGGACATATTTTATT---TTTAAAAAGAGCC
AATTGTTCAGCCAAGTACTACTATTGTGAGTTTTTTTTTTCTCAAGGAATCGGTACTGTGGTGGGTTGGGAAAAGAAAAG
ATCTCTTGAACAGAGACTCGACAGAGAAAGATTGGCGCTCCGCTGGGCCACCAGCCAGAGCCCGGCCAGCAGCATGGCCA
GCTTGTCCTCACATGCATACAGTCGGTCAACTCAGCAGCAGACTTTCGTCATATTACCAAAGCCGTGACAAGATCTCTTT
TTTTACCGCCCGAACCACCCCATGCCCTCCTGCCGTCCGACGTACCCCCT-----GCTCTGAACTCGCTGCGCAGAAATT
AACCACCCACTGTCCAGTCACACTCACAGGGAACCATTGATGCATGCAGCCGCTGACACGATCCTCCTCCCC--------
-TCCCAGGATCCAATCTGGATAC----TATCTTGCGGCCATGCACTGATGACTGATCGACGATGCTCACACGCATGGCAA
TGGCGT---AGCCTGCTGC---CTGCCGCATTCCACACGTACACGCCTGGCTCTCGCGGCATGCATTTTCACTTGCACGC
TCTCGGCCCATTTTCACCCAGGCCGACGTATAATTATCCTCTTCACATGCTCGTCCTCCTCCTCCTCCCCGGCCTCGCCG
CACTGTTCATGTCACCCTCTCTTTACTCGCCCTCGCCATTTACTGGCCTCACTC--GCTCTCACATGGCGCCCCATTAAT
ATATAGCGCCACCACCCCCCGCTCCAAGCTCCAAGAACTCCACCCACACTCCCAGCTCACTCACAGACGCACTACACGGT
GCACCTTCCTCGCTCTAGCCAGCCAAGCGAGCTAG-----------TAGCCCGGTAGGCCGTGCGGTGCACACTGC----
-----CACGCCATGTCGAGCAAGCCGTCGTCCAGGAGGAGCAGCTTCACGCTGCGGCAGCCGCCGGTGGTGGACGTCGGC
TGCAACTGCCGCCGCCCGAAGCTCTTCTCCAGCCTCTTCTCCTCGTCCTCCCTGCCGTTCCGCGGCA---GGGGCGGCAA
GCCCAAGTCGCCCAACGCCTCCTCCACGTCCACCACCACGGCGTTCACGGCCACCACGCTCGGCGGCCGCAGCGGCACCA
CGGCCACCTCCGCCGACTCCGCCTCCTGGGGCCCCGCGTCCTTCACCAACAACTCGCTGTACGAGGACCCCGCCGCCGCT
GCGCGCCACCGTGGCCAGG---AGCCGGAGCAGGACACGAGGCGCCGGCGGAGGCAGCGGCGGCGTCGCAGGCGCGCCGC
TTGGGACGGAGGCGT---CGGCGGCGGGCACGGGGAGCAGGATGCGGAGGCGTACGGGCGCGTGGCGCGGGAGAGCGTGC
CGGTGGCGGTGGAGTCGGCGGAGCCGTACGAGGACTTCCGGGAGTCGATGGTGCAGATGGTGGTGGAGAAGGAGATCTAC
GCGTGGGACGACCTCAACGACCTGCTCACCCAGTTCCTCACCCTCAACTCGCCGCGCCACCACCCGCTCATCCTCCACGC
CTTCGCCGACCTCTGGACCCGCAACGGCCTCTTCTCCCCTCCATCGCCATGCCAGTTCTAGCCAGCTACACTCCTACCGC
TAGCTAAAAGCTA---------GCCGCCGCCGGTCAGCATTACACCGCCACGGCGCCATGCACGCACGCAT----CCACG
TCATACTCTTACCACCAGTACTACTCCTGTT---TATTGCTTACTGTAACCATTAGTGTTGTAATTCCTAGTAGTAGCAC
CTGATCCATCGTCAGTTCGTTAACTAGCT----ACCCGTAGTA--------CTCCTCCATGTCCATCACTCCGTGGCCGG
CCGGGGGAGGTTATTAATGGAGATCCCGGCCGCGGCCGGCGAGATGCGCCTAGTCTTCAGCTCAAGCTAAGCTGAAAAGC
TAGCTAAGCATGATGGTGTAATCCAAATCAATGTAACCGTTATT-------CATGTAATGTAATGATGCGTGCGCGTGGC
GCCATGGCGTTGTAATGATATAAGTAACTGTTTG--------TGTTTGTGCATCAAGTACGTGC---------ACTAGTT
ATGCAGTCGTTCACTGCTCAACCTTTTCTTTTTTATTGAAGAAACATATCGTCACTCATCTTTCACTGTTTTACTGACA-
-TGCCACTGGACT----GCTGGCTAGTTTTACCGCTGCTTTTGTTGCGATTCATTTGCTCACCGTCCTGTCAACTCGTGA
AATATGTGTGT-ACTACGTGCCGCACCACTGCCATGTTGTCACGTCCAATCCCTTTTCGTTCTCGTGCATGCGTACGTGC
GTAC---GTGCATGGGTTGGTGCGACCGTGCGCGCGCGCGCGCGCGTCGTGAACCAGGTGCAAAAGCTGCTGCGCCCGAG
GCTGATTTGTG------------------------TCCGCCCCTCCAGCGTCTAGTTGTTTCACTGTGCGGGCGAGCTGA
CGGGTGCAACGACAAGCAGCTGTGCCACTGTTGGGGCCTGGATGAGATTGGAGCGGATAGCAGGCGTGCGAATCAACGGC
TGGATCTCGACACAGTGCCCTTGCACTGTGTGGGCTTGATTGCGTCGGGGCCTCAGCCCGCAGGCCTGCTGCCCAAAAGG
TCGACGGAGCCACAGTACCGGCTCGTCTCAGCGTATTCATTGG-GGTAAATTTTCACTGGTCCTGTCATAAAGCGTCTAC
GTGTACGTGTTCTGTTGCGGTCCTTGCTACGTAGC------AGTAGTAGGATAATACTGTTCCTGCAGGCTGGTGC----
CAACCGCTCCTGGA-----TGGATCGGTCGACGATCGAACCATTAGAATCTGA---CTTATGGGGCCACAGGAAC-----
ACTGTAGACTTTACTA---GCAAGGCCAGCTACACCGATACGTATATATATGCGTGTCAAATTTCACGATCGTATTCGTT
GGCCAGCTACACCAAGCCGCAACT---------------ATACTTTGATGCTTCGGATTCGAGCGAACTGAG--GAATTT
TGATTGTGCACTACGCTAGACAAAACTTTCGACCCCCCAGTTTCACAACAGGAGGACAGTTACGTTGTGTAGTTATAGTA
GTAGCAGCAGTACCGTGGTACTCAGAGTCCAAGTAGTCGTAC------GTACCGCGGCAGCAACTGGA------------
-----------------------
>chr3A_1
ATTTCAATTCATTTGACTCGGTATATCATATGTACAGACGTCCAGTAAAATATTCCGGGAGGGTCCGAGATGCAGTTTTC
TTGGGCAGTTCACGCTTCCATTCTATCAAAAAAAAAGGTTTTATTTCCGGCGGCTATGTACCGATCGTACGTGGTGCTAC
CTGCAACAAGGCCTGGTTAGGTTTTTTGTCAGCTAGCTAGCCAGCCAGTGGCAGAAAGTAAATAATTCTTTAAAGCAGCC
GAGGAGGGGAAGAATACATATATAGCAGAATAACGCTGAAATGATGCGACAGACATATTTTATTATCTTAAAAAAGAGCC
AATTGTTCAGCCAAGTACTGT---TGCGAG-TTTTTCTTTCTCAAGGAATCGGTACTGTGGCGGGTTGGGAAAAGAAAAG
ATCTCTAGAGCAGAGACTCGACAGAGAAAGATTGGCGCTCCGCCGGGCCACCC-----------GCCAGCAGCATGGCCA
GCTTGTC----------------------------------------------------------------------ATT
TTTTACCGCTCCA-----------------TGCCGTCCGACGTAGTACCCCTGCCGCTCTGACCTCGCTGCGCAGAAATT
AACCACCCACCGTCCAGTCACGCTCACAGGGAGCCATTGATGCATGCATGCATGCAGCCAGCGCTCGTCCCTCCCAGTCA
TTCCCAGGATCCAATCTGGAT-----------------------------------------------------------
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>chr3A_864
CAGTCCCAC-----------------------------------------------------------------------
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----------------------------TATAATTATCCTCTTCACATGCTCGTCCTCCTCCTCC---CCGGGCTCGCCG
CACTGTTCATGTCACCCTCTCTTTACTCGCCCTCGCCGTTTACTGGCCTCGCTCACGCCCTCACATGGCGCCCCATTAAT
ATATAGCGCCACAGCCCCCCGCTCCAAGCTCCGAGAACTCCACCCGCACTCCCAGCTCACT--------CACTGCACGGT
GCACCTTCCTCGCTCTAGCCAGCCGCCAGCCGCCAGCCAAGCGAGCTAGCCCGGTGGGCCGTGCGGTGCGGTGCGCGCTG
CCACGCACGCCATGTCGAGCAAGCCGTCGTCCAGGAGGGGCAGCTTCGCGCTGCGGCAGCCGCCGGTGGTGGACGTGGGC
TGCAACTGCCGCCGCCCGAAGCTCTTCTCCAGCCTCTTCTCCTCGTCCTCCCTGCCGTTCCGCGGCGGCCGGGGCGGCAA
GCCCAAGTCGCCCAACGCCTCCTCCACGTCCACCACCACGGCGTTCACGGCCACCACCCTCGGCGGCCGCAGCGGCACCA
CGGCCACCTCCGCCGACTCCGCCTCCTGGGGCCCCGCGTCCTTCACCAACAACTCGCTGTACGAGGACCCGGCAGCCGCC
GCGCGCCGCCGCGGCCAGG---AGCCGGAGCAGGACACGCGGCGCCGTCGGAGGCAGCGGCGGCGTCGCAGGCGCGCCGC
GTGGGA------------CGGCGCTGGGCACGGGGAGCAGGAGGCGGAGGCTCACGGGCGCGTGGCGCGGGAGAGCGTGC
CGGTGGCGGTGGAGTCGGCGGAGCCGTACGAGGACTTCCGGGAGTCGATGGTGCAGATGGTGGTGGAGAAGGAGATCTAC
GCGTGGGACGACCTCAACGACCTGCTCACCCAGTTCCTCACCCTCAACTCGCCGCGCCACCACCCGCTCATCCTCCACGC
CTTCGCCGACCTCTGGACCCGCAACGGCCTCTTCTCCCCTCCCTCGCCGTGCCAGTTCT----AGCTACCCTCCTGCTCC
TAGCTCAAAGCTA---------GCCGCCGCCGGTCAGCATTACACCGCCACGGCGCCATGCACGCACGCACCCACCCTCG
TCACACTCTTACCACCAGTACCACTCCTGTT---TATTCTTTACTGTAACCATTAGTGTTGTAATTCCTAGTAGTAGCAC
CTGATCGACCGTCAGTCTGTTAACTAGCTAGCCACCCGTAGTA--------CTCCTCCATGTCCATCACTCCATGGCCGG
CCGGGGGAGGTTATTAATGGAGATCCCGGCCG------GCGAGATGCGCCTAGTCTTCATCTCAAGCTAG----------
----TAAGCATGATGGTGTAATCCAAGCCAATGTAACCGTTATTATTCATGCATGTAATGCAATGATGCGTGCGCGTGGC
GGCATGGCGTTGTAATGATATAACTACCACTACTCCTCATGTTGTTTGTGCATCAAGTAGTACGTGTGCTACTACTAGCT
ATGTAATCGTTCACTGCTCAACCATTTTTCTTGTCGG------------------TCATCTTTCACTGTTTTTACCGACA
GTGCCACTGGGCTGCTAGCTAGCCATTTTTACCGCCGCTTTTGTTGCGATTCGTTTGCTCACCGTCCTGTCAACTCGTGA
AATATACGTGCCACTACGTGCCGCACTTGTCACGTC------CGCCCAAGCCCTTTCCGCTCTCGTGCATG----CGTGC
GTAC---GTGCGTGGGTTGGTGCGACCGCGCGCGC------------CGTGAACCAGGCGCAAAAGCTGCTGCGCCCGAG
GCCGATTTGTGTCCCCGGCTCCTCCGTTGG------------CTCCAGCGCCCAGTTGTTTCACTGTGCGGGCGAGCTGA
CGGGTGCAACGACAAGCAGCTGCGCCGCTGTTGGGGCCTGGATGAGGTTGGAGTGGATAGCAGGCGTGCGAATCAACGGC
TGGATCTCGCCACAGTGCCCTCGCACTGTGTGGGTTTCATTGCGTCGGGGCCTCGGCCCGCAGGCCTGCTGCCCAAAAGC
TCGACGGAGCCACAGTGCCGGCTCGTCTCAACGTATTCATGGG-GGTAAATTTTCATTGGCCCCGTCATAAAGCGTCTAC
GTGTACGTGCTCTCTCGCGGTCCTTGCTACGTAGTAGTAGTAGTAGTAGGATAATACTGTGCCTGCATGCTGGTGCATGC
CAACCGCTCCTGGCATCGGTCGGTCGGTCGACGATCGAACCATTAGGTTCTGA---TTTATGGCGCCACAGGAAC-----
ACTTTGCTACTATCAAGTACTCCGATACG-------------------TATGCGTGTCAAATTGCATGATCGTATTCATT
GGCCATCATTCAATTTACAAACCAAAGCCGGACGCCAAAATTTTTTGATGCTTCGGATTCAAGCGAGCAGAGAGGAATTT
TGATTGTTCACTACGCTAGGCAAAACTTTCGACCCCGT-GGTACAGTAGTTA--------------------------TA
GTAGCAGCAGTACCGTGGTACTCAGGGTCCAAGTAGCCGTACTCGCACGTACCGAGGCAGTAACAGGACGCGGCGCAACT
GAATCCCCATCCCGCCTCG----
>SNPs
----------S-----S---------------------S----------------------------------------S
S------S-------S------------S------------------S--------------------------------
-------------------------------------S------------------------------------------
------------------------------------S-----------------S-------S-----------------
S----------------------------S-----S-------------S--------------S---------------
----S---------------------------------------------S-----------------------------
---------------------------------------------------S----------------------------
------------------S-------------------------------------------------------S-----
----S---------------------------------------------------------------------------
---------------------SSSSSS-----------------------------------S------------S----
------SSS----------SSS---------------------------SS-----------------------------
--S----S-S----------------------------------------S----------------------------S
----S----------S-----------------------------S----------------------------------
-------------------------------------------S------------------S------------S----
---------------------------------------------------------------------S-----SSSSS
S-------------------------------------------------------------------------------
------------------------------------S-------------------------------------------
------------------------------------------------------S-------------------------
----------------------------------------------------------------------------S---
-------------------SSS-------------S--------------------------------------------
S--------S-S--SSSS--------------------------------------------------------------
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------------------------------------------------------------------------------S-
-------------SSSSSSSSS--S-------------------------------------------------------
--------------------S----------SSS------------------------------------S---------
----------------------------------S-SSSSSSSSSSSSSSS-----------------------------
----------------------------------------------S-S--------S----------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
----------------------------------S--------------S------------------------------
------------S-------------------------------------------------------------------
---------S--------------------------------------------------------------------S-
--S-SSS-----------------------------------S-------------------------------------
------------S-S--SSSSS--------SSSSS---S-------S---------------------------------
----------------------------------------------------------S---------------------
---------------------SS--------S----------------------S-------------------------
-------------------------------------------S---------------SS-------------------
--------S---------S-SSSS--------------------------------------------------------
-----S--------------------------------SS-------SSS-SSSSS-------------------SSSSS
---------S--S-----S-------S-------SSSSSSSSSSSSSS----S---------------------------
----S--S---------S-S-----------S---------S-------------------------SSS-SSSSS----
----------S----------S-----------------------S--S------S--SS-SS-SSSSSSSSS--SSSSS
SSS-------------------------S--S----------------------------------------S-------
--------S----S-SS-SSSSS
>forward_645
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-----------------------------------------------------------------CGCTGCGCAAAAATT
AACCG---------------------------------------------------------------------------
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>reverse_2120
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---------------------------------------CCGTGGTACTAGCTCCTCCA---------------------
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>forward_1317
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-----------------GAAGCTCTTCTCCAGCCTCC-------------------------------------------
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>reverse_3312
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-------------------------------GCGCCAAAATGCTTTGATGC-----------------------------
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