>input_sequence_54818
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-----------------------------------------------------ATGCCTCCCCCGCTGCTCGTCTTCGCT
TGCCTCGTCCTGGTCGTCCTGCTTGGCGCGCCATGGCCGTCCGGGGCGGGGGCGAGGCCGCAGCTTTTCGCGCTGCGGGC
GCGCCAGATGCCGGCCAGGGCGCTGCCGCGGCAGCCCAGCAAGCTGCGGTTCCACCACAACGTCAGCCTCACCGTCTCGC
TCGTCGTCGGCACGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTGGCTGC
TCTGCGCGCCGGCGGGCGGCGCCAGGAACAGGTACAACGCGACGTCCTTTCGTCCGAGGGCCTCGGCCACCTTCGCCGCC
GTGCCCTGCGCCTCCGCGCAGTGCCGCTCCCGCGACCTGCCGTCGCCGCCGGCCTGCGACGGGGCGTCGAGCAGGTGCAG
CGTGTCGCTCTCCTA--CGCGGACGGCTCCTCCTCCGACGGCGCGCTCGCGACGGACGTCT-----------------TC
GCCGTCGGCGGCGGGCCGCCGCTGCGCGCGGCGTTCGGCTGCATGGCCTCCGCGTTCGACTCCTCCCCGGACGGGGTCGC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTCGTCTCGC----AGGCCAGCACCCGCCGCTTCTCCTAC
TGCATCTCCGACCGCGACGACG--CCGGCGTGCTGCTCCTCGG----CCACAGCGACCTGCCCACCTTCCTCCCGCTCAA
CTACACGCCCCTGTACCAGCCGGCGTTGCCGCTCCCCTACTTCGACCGCGTCGCCTACTCCGTCCAGCTCCTGGGCATCC
GCGTCGGCGCCAAGCACCTGCCCATCCCGGCGTCGGTGCTCGCGCCGGACCACACCGGGGCGGGGCAGACCATGGTGGAC
TCCGGCACGCAGTTCACCTTCCTGCTCGGCGACGCCTACTCGGCACTGAAGGCCGAGTTCACGCGACAGGCCAGGCCGCT
CCTCCCGGCCCTCGACGACCCCGGCTTCGCGTTCCAGGAGGCGTTCGACACGTGCTTCCGCGTGCCCCAGGGGCGGACCC
CGCCGGCGGCGAGGCTGCCGAGCGTGACG------CTGCTGTTCAACGGCGCGGAGATGGCGGTGGCGGGGGAGAGGCTG
CTGTACAAGGTCCCCGGGGAGCGGCGCGGCGGCGACGGC---------GTGTGGTGCCTGACGTTCGGCAACGCGGACAT
GGTGCCCATCATGGCGTACGTGATCGGGCACCACCACCAGATGAACGTGTGGGTGGAGTACGACCTGGAGCGCGGCCGCG
TCGGGCTGGCGCCCGTCCGCTGCGACGTGGCCAGCGAGCGCCTCGGCCTCATGCTCTGA---------------------
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--------
>chr3A_1_TraesCS3A01G361500
AATACGAATACGAGAGAGTAACTTTTTTCCGACTCAAACGTTATAGACGTATTTTTTTTGCGGGAGATATATAGACGTAT
TTTAGTGTATTTGTTCACTCATTTCAATAGTACATACCGAAATATCTTAAAGTGAATGGAGTAGCTCATAGGTCCTTTTT
GTTTGGGCTTTTGCTTCTACTTTTATGGCTTTTTCACTTTGATCAAAAAGTTATAAAACCTCCTATATAGGTGTTTGAAG
CCAAAATAAAATAGCTGCAAAAGCAAAAGCAAAAACACAAACAAACAGACAGGGTGATGATATCATAATACTCCCTCCGT
CACAGTTTAGAAGGCATAATTAAATTTGCGTGAGTTTCCACAATAGACAAGGTTTAGAGCGCATTACATTTATTTCTAGT
AGCTAATTAGTACTCCGATATACTATTTCTATATGCATGCGTAGTGTGAATGCTATTTTTTAGCCCATCTCACAACCAAT
AGATAACCACCCAGGTCTCAGAGAATTTCCAAGCACGTCTTTTAAACCGTGACGGAGGGAGTATCATGGTTAAATCGATC
GTTTAAATTTGACTCAAAATAGAGGAGGCCTACCGGTCCAGAGAATCCGACCGCGTGAGCTTCCACGAAAAGTTTCTCAA
TTACTCCGTAGATATACTGTGGTAGTACTGCACGCATTATTACTGCTGCTGTAAA-CCTCAGCACTGGCGCGTACTCCTA
CTTAAAATGTCTCTGACCACCCAGCTGGCGCTCCGTGGTTCCAAAGATAGAAGACGACAGGTGCAAAGAACCCCGGCTGC
CTCCCTGCGACAGTGACCCGTCGCTCC-------------TCCGTCCGTCAGTCGTCACCACCACTCCACTCCACTC---
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----------------------------------------------------------------------------GCCA
CTGCCCGCTCGCGCCGGCCGCCACCCCATAAAATCCACCCCGAACCAAAACCCCACACCGGAATCCAACAACACAAGCAT
TCACATGCACGCGTAGGTCCCGGCCTCCGCCTGCTCCCATCCCAACCACCGCCATGCCTCCCCCGCTGCTCGTCTTCGCT
TGCCTCGTCCTGGTCGTCCTGCTTGGCGCGCCATGGCCGTCCGGGGCGGGGGCGAGGCCGCAGCTTTTCGCGCTGCGGGC
GCGCCAGATGCCGGCCAGGGCGCTGCCGCGGCAGCCCAGCAAGCTGCGGTTCCACCACAACGTCAGCCTCACCGTCTCGC
TCGTCGTCGGCACGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTGGCTGC
TCTGCGCGCCGGCGGGCGGCGCCAGGAACAGGTACAACGCGACGTCCTTTCGTCCGAGGGCCTCGGCCACCTTCGCCGCC
GTGCCCTGCGCCTCCGCGCAGTGCCGCTCCCGCGACCTGCCGTCGCCGCCGGCCTGCGACGGGGCGTCGAGCAGGTGCAG
CGTGTCGCTCTCCTA--CGCGGACGGCTCCTCCTCCGACGGCGCGCTCGCGACGGACGTCT-----------------TC
GCCGTCGGCGGCGGGCCGCCGCTGCGCGCGGCGTTCGGCTGCATGGCCTCCGCGTTCGACTCCTCCCCGGACGGGGTCGC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTCGTCTCGC----AGGCCAGCACCCGCCGCTTCTCCTAC
TGCATCTCCGACCGCGACGACG--CCGGCGTGCTGCTCCTCGG----CCACAGCGACCTGCCCACCTTCCTCCCGCTCAA
CTACACGCCCCTGTACCAGCCGGCGTTGCCGCTCCCCTACTTCGACCGCGTCGCCTACTCCGTCCAGCTCCTGGGCATCC
GCGTCGGCGCCAAGCACCTGCCCATCCCGGCGTCGGTGCTCGCGCCGGACCACACCGGGGCGGGGCAGACCATGGTGGAC
TCCGGCACGCAGTTCACCTTCCTGCTCGGCGACGCCTACTCGGCACTGAAGGCCGAGTTCACGCGACAGGCCAGGCCGCT
CCTCCCGGCCCTCGACGACCCCGGCTTCGCGTTCCAGGAGGCGTTCGACACGTGCTTCCGCGTGCCCCAGGGGCGGACCC
CGCCGGCGGCGAGGCTGCCGAGCGTGACG------CTGCTGTTCAACGGCGCGGAGATGGCGGTGGCGGGGGAGAGGCTG
CTGTACAAGGTCCCCGGGGAGCGGCGCGGCGGCGACGGC---------GTGTGGTGCCTGACGTTCGGCAACGCGGACAT
GGTGCCCATCATGGCGTACGTGATCGGGCACCACCACCAGATGAACGTGTGGGTGGAGTACGACCTGGAGCGCGGCCGCG
TCGGGCTGGCGCCCGTCCGCTGCGACGTGGCCAGCGAGCGCCTCGGCCTCATGCTCTGACGAGATTTGGCGTTTACCATC
CACGGTGTAAATTAGCAGTAGTACCTAGTACGTGCCACATCTTTCTCCGTTGTTAGACTGATCGAGCTGACAAGTTTGCA
TGTAAATATGGCAATGAACCTATCTATCTACTGGGATTCTGGGAAGCTCCCTCTTCCTCCCTCCCCTTTTTTGACGTCCT
AAAAGCATCTCCAGCCGTGTACGAAGCACCGATGCACCGATACGGCATCACTGATACGGCGATATGGGATATGGTAATTT
TTAAAAACATCAATACGGCGATACGTCGACTATATATAAATATTTAATAAAATAACATGTAATAATACGAACATAATAGA
ATGTGTGAAATGAGATCAAAATACTGGCCCAGCACATGTCATATTGATTTCCCTCCCCAGCAGTAGATAGTAGCAGTAAA
GCAACAAATTCAGTCATCAGCAAGAAAATATATCCCACCAACGTCAACAGAGTGATAGCCTATTTTGTGCAGCTATTTCT
CTCAGCGATGGAAGGTATCAAGCACATAGTATAGTACTACTATTAGTCTACTAGTACTACGAAACTACGAAGAAGACTCG
AGTTGGCTCAGTTCAGGCGGCTGCGTGGCGAGTCAACAAGGCCGAGAGCCACCCCAGGCGGTGGAGACGGCGGCTGCGGC
GGCGCTCCGGAGTCGCCCTCGATCTCCAATACCTGCTGCGGTCGAACAGAGTGCGGGAGAGGAAGGTTAGGA--------
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---------------------------------------------------TTAGTGTGGTCACGGGCTGTTGAGCCTCG
CTCGGAGGCTGCGTCTCTCGCTCGCCGTGTCCCGCCGTGTCACGAGCGTGTCCCAGCCGTATCGGCATTTC-TTTCTTTT
CTTTTTAAATCGCAAAAGGGGATACTTGGGG-ATACGAGTATCGAAGCCGTATCGTTCGTATCGG--------CGCCGTC
CGGTACGGCGATACAGCAGTTTTTGAAGTATCGGTGCATCGTAGCCAGCCGTGCCCTTAGGAAGGCCTCCCACGTGATTT
TTTTGTAC
>chr3D_68
-------------------------------------------------------------------TATATAAACGCAT
TTTAGTGTGTTTGTTCACTCATTTCA-----ACATACTGAAATATCTTAAAGTGAATGGAGTAGCTCATAAC--------
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--------------------------------------------------------------ATCATGGTTAAATCGGCC
GTTTAAATTTGACTGAAAATAGAGGAGGCCTACCGGTCCAGAGAATCCGACCGTGTGAGCTTCCACGAAAAGTTTTCCAA
TTACTCCGTAGATA--CTGTGCTAGTACTGCACGCGTTATTACTGCTGCAGTAAAACCTCAGCACTGGCGCGTACTCCGA
CTTAAAATGTCTCTGACCACCCAGCTGGCGCTCCGTGGTTCCAAAGATAGAAGACGACAGGTGCAAAGAACCCCGGCTGC
CTCCCTGCGACAGTGACCCCC-------CGCGGCCTCCCTTCCGTCCGTCAGTCGTCACCACCACTCCACTCCACTCGGG
ACTGAGATCCAGTGCCTTTATCGAGTGAAGTCATGCTGCAACTTTACCCTTCTAATCTTCATTCAATCCATATCCTACGG
TCCAGATCACACAAGGGGAAAGGCTCTCAACACTTAGCAGTTTTCAGCATAGTTTTTGTATAGATGATTACTCAACATTG
ACACTTATTGCTGTAGCATTCGGACATTATGCGCTGCAGCCTTTTAATATCAAGTTCTACTGGATTTAGTGTCAACTGCA
ATTGATTTATTCCACTTTGATTGCATATGCACTACTGTATAACCAAACCAAATTTTGTTTTATAGTCTGCTCATGAGTAT
CTGCAGTTCTTTATTTTTTGGATTTCAATCTGTTCAAATAAAACTGAGTTCAAGTGCCACTGCATCGTTGTTTGCAGCTT
ATTGATGTTTGCTGCTATCCTGAAAACTGCTAAGTGTTGAGAGCCTTTTCCCTTGTGTGATCTGGACCGTAGGATGTGGA
TTGGATGGAGATTACCAGGGTAAAGTTGCAGCATGACTTCACTTGATAAAGGCACTGGATCTCAGTCCCTCCACTCGCCA
CTGCGCGCTCGCGT----CGCCACCCCATAAAATCCACCCCGAACCAAAACCCCACACCGGAATCCAACAACACAAGCAT
TCACATGCACGCGTAGGTCCCGGCCTTCGCCTGCTCCCATCCCAACCACCGCCATGCCTCCCCCGCTGCTCGTCT-----
----TCGTCCTGTTCGTCCTGCTTGCCGCGCCGTGGCCGTCCGAGGCGGGGGCGAGGCCGCAGCTTTTCGCGCTGCGGGC
GCGCCAGATGCCGGCCAGGGCGCTGCCGCGGCAGCCCAGCAAGCTGCGGTTCCACCACAACGTCAGCCTCACCGTCTCGC
TCGCCGTCGGCACGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTGGCTGC
TCTGCGCGCCGGCGGGCGGCGCCAGGAACAAGTACAGCGCGACGTCCTTTCGGCCGAGGGCCTCGGCCACCTTCGCCGCC
GTGCCCTGCGCCTCCGCGCAGTGCCGCTCCCGCGACCTGCCGTCTCCGCCGGCCTGCGACGGCGCGTCGAGCCGGTGCAG
CGTGTCGCTCTCCTA--CGCGGACGGGTCCTCCTCCGACGGCGCGCTCGCGACGGACGTCTTCGCCGTCGGGGGCGGGCC
GCCG-----------------CTGCGCGCGGCGTTCGGCTGCATGGCCTCCGCGTTCGACTCCTCCCCGGACGGGGTGGC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTCGTCTCGC----AGGCCAGCACCCGGCGCTTCTCCTAC
TGCATCTCCGACCGCGACGACG--CCGGCGTGCTGCTCCTGGG----CCACAGCGACCTGCCCACCTTCCTGCCGCTCAA
CTACACGCCCCTGTACCAGCCGGCCCTGCCGCTCCCCTACTTCGACCGCGTCGCCTACTCCGTCCAGCTCCTGGGCATCC
GCGTCGGCGCCAAGCACCTGCCCATCCCGGCGTCGGTGCTCGCGCCAGACCACACCGGAGCCGGGCAGACCATGGTGGAC
TCCGGCACGCAGTTCACCTTCCTGCTCGGCGACGCCTACTCGGCACTGAAAGCCGAGTTCACGCGACAGGCCAGGCCCCT
CCTGCCCGCGCTCGACGACCCCAGCTTCGCGTTCCAGGAGGCGTTCGACACGTGCTTCCGCGTGCCCCAGGGGCGGACCC
CGCCGGCGGCGAGGCTCCCGAGCGTGACG------CTGCTGTTCAACGGCGCGGAGATGGCGGTGGCCGGGGACAGGCTG
CTGTACAAGGTCCCCGGGGAGCGGCGCGGCGGCGACGGC---------GTGTGGTGCCTGACGTTCGGCAACGCGGACAT
GGTGCCCATCATGGCGTACGTGATCGGGCACCACCACCAGATGAACGTGTGGGTGGAGTACGACCTGGAGCGCGGCCGCG
TCGGCCTGGCGCCCGTCCGCTGCGACGTGGCCAGCGAGCGCCTCGGCCTCCTGCTCTGACGAGATTTGGCGTTAACCATC
CACGGTGTAAATTAGCAGTAGTAC---GTACGTGCCAC--CTTTCTCCGTTGTTAGACTGATCGAGCTGACAGGTTTGCA
TGTAAATATGGCAATGAACCTATCTATCTACCT--------GGAAGCTCCCT----CTCTCTGCGCTTTTTTGACGTCCT
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>chr3B_552
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-----------------------------------------------------------------------AAATCGGCC
GTTTAAATTTGACTGAAAATGGAGGAGGCCTACCGGTCCAGAGAATCCGACCGCGTGAGCTTCCACGAAAAGTTTTTCAA
TTACACCGTAGATA--CTGTGCTAGTACTGCACGC---ATTACTGCTGCAGTAAAACCTCAGCACTGGCGCGTACTCCTA
CTTAAATTATCTCTGACCAGCCAGCTGGCGCTCCGTGGTTCCAAAGATAGAAGACGACAGGTGCAAAGAACCCCGGCTGC
TTCCCTGCGACAGTGACCCGTCGCCCCTCGCGGCCTCCCTTCCGTCCGTCAGTCGTCACCACCACTCCA-----------
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--------------------------------------------------------------------CTCCACTCGCCA
CTGCGCGCTCGCGT----CGCCACCCCATAAAATCCACCCCGAACCAAAACCCCACACCGAAATCCAACAACACAAGCAT
TCACATGCACGCGTAGGTCCCGGGCTTCGCCTGCTCCCATCCCAACCACCACCATGCCTCCCCCGCTGCTCGTCTTCGTT
TGCCTCGTCCTGTTCGTCCTTCTTGGCGCGCCATGGCCGTCCGAGGCGGGGGCGAGGCCGCAGCTTTTCGCGCTGCGGGC
GCGCCAGATGCCGGCCAGGGCGCTGCCGCGGCAGCCCAGCAAGCTGCGGTTCCACCACAACGTCAGCCTCACCGTCTCGC
TCGCCGTCGGCACGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTGGCTGC
TCTGCGCGCCGGC---CGGCGGCAGGAACAGGTACAACGCGACGTCCTTTCGGCCGAGGTCCTCGGCCACCTTCGCCACC
GTGCCCTGCGCCTCCGCGCAGTGCCGCTCCCGCGACCTGCCGTCGCCACCGGCCTGCGACGGGGCGTCGAGCAGGTGCAG
CGTGTCGCTCTCCTA--CGCGGACGGCTCCTCCTCCGACGGCGCGCTCGCGACGGACGTCTTCGCCGTGGGCAGCGGGCC
GCCG-----------------CTGCGCGCGGCGTTCGGCTGCATGGCATCCGCGTTCGACTCCTCCCCGGACGGCGTGGC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTCGTCTCGC----AGGCCAGCACCCGCCGCTTCTCCTAC
TGCATCTCCGACCGCGACGACG--CCGGCGTGCTGCTCCTCGG----CCACAGCGACCTGCCCACCTTCCTGCCGCTCAA
CTACACGCCCCTGTACCAGCCGGCCCTGCCGCTCCCGTACTTCGACCGCGTCGCCTACTCCGTCCAGCTCCTGGGCATCC
GCGTCGGCGCCAAGCACCTGCCCATCCCAGCCTCGGTGCTCGCGCCGGACCACACCGGGGCGGGGCAGACCATGGTGGAC
TCCGGCACGCAGTTCACCTTCCTGCTCGGCGACGCCTACTCGGCACTGAAAGCGGAGTTCACGCGACAGGCCAGGCCCCT
CCTTCCGGCCCTCGACGACCCCAGCTTCGCGTTCCAGGAGGCGTTCGACACGTGCTTCCGCGTGCCCCAGGGGCGGTCTC
CGCCGGTGACAAGGCTCCCGAGCGTGACG------CTGCTGTTCAACGGCGCAGAGATGGCAGTGGCCGGGGACAGGCTG
CTGTACAAGGTCCCGGGGGAGCGGCGCGGTGGCGACGGC---------GTGTGGTGCCTGACGTTCGGCAACGCGGACAT
GGTGCCCATCATGGCGTACGTGATCGGGCACCACCACCAGATGAACGTGTGGGTGGAGTACGACCTGGAGCGCGGCCGCG
TCGGGCTCGCGCCCGTCCGCTGCGACGTGGCCAGCGAGCGCCTCGGCCTCATGCTCTGACGAGATTTGGCGTTAACCATC
CACGGTGTAAATTAGCAGTAGTAC---GTACGTGCCACATCTTTCTCCGTTGTTAGACTGATCGAGCTGACAGATTTGCA
TGTAAATATGGCAATGAACCTATCTATCTGT--------TGGGAAGCTCCCT----CTCCCTGCGCTTTTTTGACGTCCT
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>chr5B_957
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---------CGCCTAGGTCCCGGGCTTCGCCTGCTCCCATCCCAACCACCACCATGCCTCCCCCGCTGCTCGTCTTCGTT
TGCCTCGTCCCGTTCGTTCTTCTTGGCGCGCCATGGCCGTCCGATGCGGGGGCGAGGCCGCAGCTTTTCGCGCTGCGGGC
GCGCCAGATGCCGGCCAGGGCGCTGCCGCGGCAGCCCAACAAGCTGCGGTTCCACCACAACGTCAGCCTCACCGTCTCGC
TCGCCGTCGGCACGCCG-----------CCGCAGAACGTCACCATGGTTCTCGACACCGGCAGCGAGCTGTCCTGGCTGC
TCTGTGCGCCGGC---CGGCGGCAGGAACAGGTACAATGCGACGTCCTTTCGGCCGAGGTCCTCGGCCACCTTCGCCACC
GTGCCCTGCGCCTCCGCGCAGTGCCGCTCCCGCGACCTGCCGTCGCCATCGGCCTGCGACGGGGCGTCGAGCAGGTGCAG
CGTGTCGCTCTCCTA--CGCGGACGGCTCCTCCTCCGACGGCGCGCTCGCG-----------------------------
---------------------------------TTCGGCTGCATGGCATCCGCGTTCGACTCCTCCCCGGACGGCGTGGC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTCGTCTCGC----AGGCCAGCACCCGCCGCTTCTCCTAC
TGCATCTCCGACCGCGACGACG--CCGGCG--------------------------------------------------
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>chr5D_1137
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-----------------------------GGCAGTCGAGCAAGATGTGGTTCCACCACAACGTCAGCCTCACTGTCTCGC
TCGCCGTCCGCACGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGAAGCGAGCTGTCCTTGCTGT
TCTACGC---------------------CAGGAACAACGTGATGTCCTTCGGCCCGAGGAGCTCGGCCACCTTCGTCGCC
GTGCCCTGCGCCTCCGCACAGTGCCGCTCCCGTGACGGCA--TCGCCTCCGGCCCGCAACGGGGCGTCGA-CAGGTGCAG
CGTGTCGCTCTCCTA--CGCGGACGGGTCCTCCTCTGACGGCGCGCTCGCGACCGAATTCT-----------------CC
GCCA-----------------CTGTGCGCGGCGTTCCGCTGCATTGCTTCAGCGTTCGACTCGTCCCCGGTCGGCGGCCC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTCGCCTCGC----GGGCCAGCACGCCACACTTCTCGTGC
TGCATCTCCGGCCACGACGATG--CCGTCGTGCTGCTCCTCGGACTCCCACAGCGACCTGCCCACCTTCC-GCCGCTCAA
ATACATGCCCGTGTACCAGCCAGCCCTGCCGCTTCCGTACTTCGACCGCGTCGCCTACTCCGTCCAGCTCATGGGCATCG
GCGTCGGCG-----------------------------------------------------------------------
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>chrUn_1137
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-----------------------------GGCAGTCGAGCAAGATGTGGTTCCACCACAACGTCAGCCTCACTGTCTCGC
T-----------CGCCGTCGGCACGCCGCCGCAGAAGGTCACCATGGTGCTCGACACCGGCAGCGAGCCGTCCTTGCTGC
TCTACGC---------------------CAGGAACGACGTGATGTCCTTCGGCCTGAGGAGCTCGGCCGCCTTCGTCGCC
GTGCCCTGCGCCTCTGCACAGTGCCGCTCCCGTGACCTGCCGTCGCCTCCGGCCTGCAACCGGGCGTCGAGCAGGTGCAG
CGTGCCGCTCTCCTA--CGCGGACGGGTCCTCCTCTGACAGCGCGCTCGCAACTGACGTCT-----------------CC
GCCG-----------------TTGTGCGCGGCGTTCCGCTGCATTGCTTCCGCGTTCGACTCGTCCCCGGACGGCGTCCC
GAGCGCCAGGGTGCTGGGCATGAACAGGGGCGTCCTCTCCTTCGTCTCGT----GG----GCACCCCATACTTCTCGTGC
TGCATCTCCGGC--CGACGACG--CCGGCGTGCGGCTCCTCGGACTCCCACAGCGACCTGCCCACCTTCC-GCCGCTCAA
CTACACGCCCCTGTACCAACCAGCCCTGCCGCTTCCGTACTTCGACCGCGTCGCCTACTCCGGCCAGCTCATGGGCATCC
GCGTCGG-------------------------------------------------------------------------
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>chr4A_1137
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-----------------------------GGCAGTCAAGCAAGATGTGGTTCCACCACAACGTCAGCCTCACTGTCTCGC
T-----------CGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTTGCTGT
TCTACGC---------------------CAGGAACAACGTGATGTCCTTCGGCCCGAGGAGCTCGACCACCTTCGTCGCC
GTGCCCTACGCCTCCGCACAGTGCCGCTCCCGTGACCTGCCGTCGCCTCCGGCCTGCAACGCGGCATCGAGCAGGTGCAG
CGTTTCGCTCTCCTACGCGCGGACGGGTCCTCCTCTGACGGCACGCTCGCGACTGACATCT-----------------CT
GCCG-----------------TTGTGCGCGGCATTCCGCTGCATTGCTTCCGGGTTCGACTCGT-CCCGGTCGGCGGCCC
GAGCGCCGGGCTGCTGGGCATGAACAGGGGCGCCCTCTCCTTGGTCTCGC----GGGCCAGCACCCCACACTTCACGTGC
CGCATCTCCGGCCGCGACGACG--CCGGCGTGCTGCTCCTCGGACTCCCACAGCGACCTGCCCACCTTCC-GTCTCTCAA
CTACACGCCCCTGTACCAGCCGGCCTTGCCGCTTCCGTACTTCGACCGCGTCGCCTACTCCGTCCAGCTCATGGGCATCC
GCGTCGGCG-----------------------------------------------------------------------
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>chr6D_1137
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-----------------------------GGCAGTCGAGCAAGATGTGGTTCCACCACAACGTCACCCTCACTGTCTCGC
TCA-----------CCG-----------CCGCAGAACATCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTTGCTGC
TCTACGC---------------------CAGGAACAACGTGATGTCCTTCGGCCCGAGGAGCTCGGCCACCTTCGTCGCC
GTGCCCTGCGCCTCCGCACATTGCCGCTCCCGTGACCTTCCGTCGCC-TCGGCCTGCAACGGGGCGTCGAGCAGGTGCAG
CGTATCGCTCTCCTA--CGCGGACGGGTCCTCCTTTGACAGCGCGCTCGCGACCGACGTTT-----------------CC
GCCG-----------------TTGTGTGCGGCGTTCCGCTGCATTGCTTCCGTGTTCGACTCGTCCCCGGACGGCGTCCC
GAGCGCCGGGCTGCTGGGCATGAACCGAGGCGCCCTCTCCTTCGTCTCGC----GGGGCAGCACCCCACACTTCTCGTGC
TACATCTTCGGCCGCGACGATG--CCGGCGTGCTGCTCCTTGGACTCCAACAGCGACCTGCCCACCTTCC-GCCGCTCAA
CTACAAGCCCCTGTACCAGCCAGCCCTGCCGCTCCCGTACTTCGACGGCATCGCCTACTCCGTCCAGCTCATGAGCATCC
GCGTCGGCG-----------------------------------------------------------------------
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>chr6B_1137
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-----------------------------GGCAGTCGAGCAAGATGTGGTTCCACCACAACGTCAGCCTCACTGTCTTGC
T-----------CGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTTGCTGT
TCTACGC---------------------CAGGAACAACGTGATGTCCTTCGGCCCGAGGAGCTCGACCACCTTCGTCGCC
GTGCCCTGCGCCTCCGCACAGTGCCGCTCCCGTGACCTGTCGTCACCTCCGGCCTGCAACGCGGCATCGAGCAGGTGCAG
CGTGTCGCTCTCCTACGCGCGGACGGGTCCTCCTCTGACGGCACGCTCGCGACTGACATCT-----------------CC
ACTG-----------------TTGTGCGCGGCATTCCGCTGCATTGCTTCCGGGTTCGACTCGT-CCCGGTCGGCGGCCC
GAGCGCCGGGCTGCTGGGCATGACCAGGGGCGCCCTCTCCTTGGTCTCGC----GGGCCAGCACCCCACACTTCACGTGC
TGCATCTCCGGCCGCGACGCCG--CCGGCGTGCTGCTCCTCGGACTCCCACAGCGACCTGCCCACCTTCC-GTCCCTCAA
CTACACGCCCGTGTACCAGCCGGCCTTGCCGCTTCCGTACTTCGACCGCGTCGCCTACGCCGTCCAGCTCATGGGCATCC
GCGTCGGCG-----------------------------------------------------------------------
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>chr6B_1145
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-------------------------------------AGCAAGATGTGGTTCCACCACAACGTCAGCCTCACTGTCTTGC
T-----------CGCCG-----------CCGCAGAACGTCACCATGGTGCTCGACACCGGCAGCGAGCTGTCCTTGCCGT
TCTACGC---------------------CAGGAACAACGTGATGTCCTTCGGCCCGAGGAGCTCGACCACCTTCGTCGCC
GTGCCCTGCGCCTCCGCACAGTGCCGCTCCCGTGACCTGTCGTCACCCCCGGCCTGCAACGCGGCATCGAGCAGGTGCAG
CGTGTCGCTCTCCTACGCGCGGACGGGTCCTCCTCTGACGGCACGCTCGCGACTGACATCT-----------------CC
GCTG-----------------TTGTGCGCGGCATTCCACTGCATTGCTTCCGGGTTCGACTCGT-CCCGGTCGGCGGCCC
GAGCTCCGGGCTGCTGGTTATGACCAGGGGTGCCCTCTCCTTGGTCTCGC----GGGCCAGCACCCCACACTTCACGTGC
TGCATCTCCGGCCGCGACGCCG--CCGGCGTGCTGCTCCTCGGACTCCCACAGCGACCTGCCCACCTTCC-GTCCCTCAA
CTACACGCCCCTGTACCAGCCGGCCTTGCCGCTTCCGTACTTCGACCGCGTCGCCTACGCCGTCCAGCTCATGGGCATCT
GCGTCGGCG-----------------------------------------------------------------------
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>chr4A_1556
GCGGCGA-------------------------------------------------------------------------
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-----CCGGCCTACTCGGCATGAACCGTGGCAGCCTCTCCTTCGTGACGCAGACGG----CGACCCTCCGCTTCGCCTAC
TGTATCGCCCCC--GGCCAAGGACCCGGCATCCTCCTCCTCGG----CGGCGACGGCGGCGCGGCC--CC-GCCGCTGAA
CTACACGCCGCTGATAGAGATTTCCCAGCCGCTGCCGTACTTCGACCGGGTGGCCTACTCCGTGCAGCTGGAGGGCATCC
GCGTGGGGCGCGCCCTGCTCGCCATCCCCAAGTCCGTGCTCACGCCGGACCACACGGGCGCCGGGCAGACCATGGTGGAC
TCCGGCACGCAGTTCACCTTCCTCCTGGCCGACGCCTACGCGGCGCTCAAGGGCGAGTTCCTGAACCAGACGCGGTCGCT
GCTCGCCCCGCTCGGCGAGCCGGGCTTCGTGTTCCAGAGCGCGTTCGACGCGTGCTTCCGCGGCCCGGAGGAGCGAGT--
-GTCGGCGGCAAGCCGGCTTCTCCCCGAGGTGGGCCTGGTGCTCCGCGGCGCGGAGGTGGCCGTGGCCGGGGAGAAGCTC
CTGTACAGTGTACCCGGCGAGCGGCGCGGGGAGGAGGGGGAGGAGGCTGTGTGGTGCCTGACGTTCGGGAACTCGGACAT
GGCCGGCATGTCGGCGTACGTGATCGGGCATCACCACCAGCAGGACGTGTGGGTGGAGTACGACCTTCAGAACGGCCGAG
TCGGCTTCGCGCCGGCGCGCTGTGAGCTCGCCACCCAGCGCCTCGGC---------------------------------
--------------------------------------------------------------------------------
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>chr4D_1556
GCGGCGA-------------------------------------------------------------------------
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-----CCGGCCTCCTCGGCATGAACCGTGGCAGCCTGTCCTTCGTGACGCAGACGG----CGACCCTCCGCTTCGCCTAC
TGTATCGCCCCC--GGCGAAGAACCCGGCATCCTCCTCCTCGG----CGGCGACGGCGGCTCGGCC--CC-GCCACTTAA
CTACACGCCGCTGATAGAGATCTCCCAGCCGCTGCCGTACTTCGACAGGGTGGCCTACTCCGTGCAGCTGGAGGGCATCC
GCGTGGGGCGCGCCCTTCTCGCCATCCCCAAGTCCGTGCTCACGCCGGACCACACGGGCGCCGGGCAGACAATGGTGGAC
TCCGGCACGCAGTTCACCTTCCTCCTGGCCGACGCCTACGCGGCGCTCAAGGGCGAATTCCTGAACCAGACGCGGTCGCT
GCTCGCCCCGCTCGGCGAGCCGGGCTTCGTGTTCCAGAGCGCGTTCGACGCGTGCTTCCGCGGGCCGGAGGAGCGAGT--
-GTCGGCGGCAAGCCGGCTTCTCCCCGAGGTGGGCCTGGTACTCCGCGGCGCGGAGGTGGCCGTGGCCGGGGAGAAGCTC
CTGTACAGTGTACCCGGCGAGCGGCGCGGGGAGGAGGGGGAGGAGGCTGTGTGGTGCCTGACGTTCGGGAACTCGGACAT
GGCGGGCATGTCGGCGTACGTGATCGGGCACCACCACCAGCAGGACGTGTGGGTGGAGTACGACCTTCAGAACGGCCGGG
TCGGCTTCGCGCCGGCGCGCTGTGAGCTCGCCACCAAGCGCCTCGGC---------------------------------
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--------
>chr4B_1556
GCGACGA-------------------------------------------------------------------------
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-----CCGGCCTCCTTGGCATGAATCGTGGCAGCCTCTCCTTCGTGACGCAGACGG----GCACCCTCCGCTTCGCCTAC
TGTATCGCCCCC--AGCCAAGGACCAGGCATCCTCCTCCTCGG----CGGCGACGGTGGGGCGGCC--CC-GCCACTTAA
CTACACGCCGCTGATAGAGATCTCCCAGCCGCTGCCGTACTTCGACAGGGTGGCCTACTCCGTGCAGCTGGAGGGCATCC
GCGTGGGGGGCGCCCTGCTCGCCATCCCCAAGTCCGTGCTCACGCCGGACCACACGGGCGCCGGGCAGACAATAGTGGAC
TCCGGCACGCAGTTCACCTTCCTCCTGGCCGACGCCTACGCGGCGCTCAAGGGCGAATTCCTGAACCAGACGCGGTCGCT
GCTTGCCCCGCTCGGTGAGCCGGGCTTCGTGTTCCAGAGCGCGTTCGACGCGTGCTTCCGCGGCCCGGAGGAGCGAGT--
-GTCGGCGGCAAGCCGGCTTCTCCCCGAGGTGGGCCTGGTACTCCGCGGCGCGGAGGTGGCCGTGGCCGGGGAGAAGCTC
CTGTACAGTGTACCCGGCGAGCGGCGCGGGAAGGAGGGGGAGGAGGCTGTGTGGTGCCTGACGTTCGGGAACTCGGACAT
GGCCGGCATGTCGGCGTACGTGATCGGGCACCACCACCAGCAGGACGTGTGGGTGGAGTACGACCTTCAGAACGGCCGAG
TCGGCTTCGCGCCGGCGCGCTGTGAGGTCGCCACCCAGCGCCTCGGC---------------------------------
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--------
>chr2A_2527
--------------------------------------------------------------------------------
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----------------------------------CACCGATACGGCGATACGAGTACGGCAATATGGGATACGGCAATTT
TTAAAAACATCAATACGGCGATACGTCGACTATATATAAATATTTAATAAAATAACATGTAATAATATGAACATAATAGA
ATGTGTGAGATGAGATCAAAATACTGGCCCAGCACATGTCATATTGATTTCCCTCCCCAGCAGTAGATAGTAGCAGTAAA
GCAACAAATTCAGTCATCAGCAAGAAAATATATCCCACCAACGTCAACAGAGTGATAGCCTACTTTGTGCAGCTATTTCT
CTCAGCGATGGAAGGTATCAAGCACATAGTATAGTACTACTATTAGTCTACTAGTACTACGAAACTACGAAGAAGACTCG
AGTTGGCTCAGTTGAGGCGGCTGCGTGGCGAGTCAACAAGGCCGAGAGCCACCCCAGGCGGTGGAGACGGGGGCTGCGGC
GGCGCTCCGGAGTCGCCCTCGATCTCCAATACCTGCTGCGGTCGAACAGAGTGCGGGAGAGGAAGGTTAGGATTAGGCCT
TCTTTGGTTCATAGGATAGGAATTTTATAGAAATAGAAAAATCATAAAAAGTGAGATGACATGCATGTCAATTTCTATAG
AGAAAGAAATGTCATTTGGTGTATAGGATAAGATTTTTTCCATTAAGTCTAGGCCAATGTTTTTTTTTCCTTTAAAATGT
GAAGGATTGATTCCTATCCTACATAGGAATAGGAATCCATTCCTACAAACCAAAAGATTTCAAAATTATTTTTTCTTTGT
AAATCCTATCCTATAGAATTCCTATAAAAATCCTACAAACCAAACGAGCCCTTAGTGTGGTCACGGGCTGTTGAGCCTCG
CTCGGAGGCTGCGTCTCTCGCTCGCCGTGTCCCGCCGTGTCACGAGCGTGTCCCAGCCATATCGGCATTTTTTTTCTTTT
CTTTTTAAATCGCAAAAGGAGATACTTGGGGGATACGAGTATCAAAGCCGTATCGTCCGTATCGGAGTATTGGCGCCGTC
CGGTACGGCGATACAGCAGTTTTTGAAGTATCGGTGCTTCGTAG------------------------------------
--------
>SNPs
SSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S--
--------S-----------------SSSSS------S--------------------------------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------SS-
--------------S------------------------------------------------------------S----
--------------SS-----S-------------S-------------S------------------------------
--------------------------------------------------------------------------------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
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----S--------SSSSS--------------------------------------------------------------
--------------------------S---------------------------------------------------S-
------------S------------------------------S------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------S-
----SSSSSSSSSSSSSSSSS-----------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------------S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------S------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
------------------------SSS---------------------------------------------S-------
-------------------------------SSSSSSSS-------------SSSS------S-S---------------
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SSS--SSS------S----------S--S-----
-------------------------------------------------------------------S------------
--------S-----------------------------------------------------------------------
--------------------------------------------------------------S-----------------
--------------------------------------------------------------------------------
-------------S--------------------------------------------------------S---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------S-----------S---------
-------------------S-----------------------S------------S-----------------------
-------------------------------------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_676
--------------------------------------------------------------------------------
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----------------CTGTGGTAGTACTGCACGCA--------------------------------------------
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--------
>reverse_3123
--------------------------------------------------------------------------------
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--AAGCATCTCCAGCCGTGTAC----------------------------------------------------------
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--------
