>input_sequence_54815
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----------------------------------------GTATATATACAAGTACTAGCTACTCTCCTTCGAGCCCCCC
CGTGCAAGTAGATTGGGAGTACGTTCATATATTTTCTTCCCCACGAAACTAATCGCTGTCTACGTATCAGAGACTATCAT
CGAACCATGACTCTTATCTCCACGGGAGGGCCGCCTCATGCTCCGTCGTCGGAGATCTCCCACCGCGCCC------ACCC
GGGGCACAAGCTGATGCTGGTGCCGACGGGCCAGGCCGTGTTCAAGTGCGACGGCTGCCATGAGCACGGCACGGGCGGCG
ATAGGTACACCTGCCTGCAGCCGTCTTGCGACTTCGACCTCCACAAGGACTGCGCCCTCGCACAGC---CCACCTTCAAG
CACCAGCTGCTGCCCGATAGCACGTTCGAGCTCTCCTTCGAGCCCCCCCGTGCCAAGCACAGGCAGCTATGCAGTGCCTG
CGGCGACTACGTGAAGGGCTTGCACTACCACTGCTACAGCAAGGACCTGTACCTCCACCCGTGCTGCGCCAAGCTGCCTC
TGGAGATCCGTCTGGGTGATGAGCTCAAGTTCGAGCTCCGCCCGGAGGTGTCTCACTGCTGCACCAAGTGCAGGAAAGGT
GGCGGCGTCAGGGATTTCTGGTTCTACCGCTCCACCTGCAAGACCGTGTACCTGCATGTCCGCTGCGTGATAGAGGATGT
TCTTCTGCCGAGCTCAAGTTCAAGTACCGAGTCCGACGTCGACGGTAATGGCAGGCTGGCCCGTTACTTCAGGGAGAGTA
CGTCGCGGAAGCAGGGGTCAGGGAAGGCCGGGAGGAACTCCGACCCCATATTCGAGATCATTAAGGCCCTGGCGAGCATC
ATCATCGCGGTACTCACTGGAAATCCGGTGCCGTTAATTCCTGCAGTGATCGATCTGGGCTCCAACGTCATCAAATCGTT
GAAAAACAGGTAGCTAGCAGCTTCATCCTGCTTGCTCATCCTCATCGTACGCACGACGT----ACTTGTTGGTGACGGGT
TGCATGATGACATATATTGTACGTAGTATACTAGCGACTATGTGTTCCATAGTGCTTGTTTGTTTCACTTCATGATTTGG
TAATCATACAGCGATTACTATACTCTCGTGAGCTGTATACTCTCGTATATACTCCCCGCCTACTTTGTACTATATTTTGC
TCCCTCCCTCACATAATGTAAGACGTTTTTTGACACTACACTAGCGTTAAAAAATGTCTTACATTATGGGATGGAGGGAG
TATATGTTGGCGCTGTCCATTTCTCATTTCTTCTTTCATGCATGTCGAATACTGTAAACACATTGTTATATGTGATTGTG
TGCA----------------------------------------------------------------------------
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>chr2B_1_TraesCS2B01G521300
GTGGTAGCCGGGATGTGGCGTTCGATGACGGTGAGTGTTGGCCGGGGTGAAAACCTGCTCTGTCTTCGGCCAGACCGGCG
GCGGCGAAACCCGTTCCCTTCTTGAAGGCGTCGTCGCGGCTCTCATTGCCAGTCGTGTTGCTCCAGGGGAAACTCTGATC
CTCAGATCGGGCGGCGGCGGCGCTCCGGTGTGTAACCTTCCTGAAGGCCCGTCTTGAAGTTCACGGTTTGTCGTATGCGG
CTTCACTTCTTCGCGGTAGCATGTTCACGGGGGAGTCCCCGATTACTCTTGTAGTGATAGGGGTGGTGTTACTGCGCTCA
GCGCCTATGTATCCTGCCTTGGATGTGTGTGTTGTGGTGGCATGCGTTTGTATCGATTTGTTGTGGATCGTTACTTTATA
TATAAAGCGGGGCGAAAACCTTTTTCGGTAACAGGCGAGTAACTACCTACTGGCAACTGGTAGTCCTCGACGGGTGGATA
TGCAAGAGACACGCGGTTTAGTTTTTGCGTGCACGCGGATAAGTAAAAACTTTCGTGTCGCTCATTGCGCTGCGACCTCC
TAGCTAGCAACCTGTGTAGTGTAGTGCCTTGATCGATCTCAAAAGTCTCGACGTACGTCGTGAACTATACGGCCGGTAGT
TTCGTGCTGATGAACTTGGGCGGTTCGGGCCTCTCATTTTCTCGAAAGTGAAAGTCTGAGGTCGTCTGCCGTATGTTTTT
CTCACCAGTCACCACTAGGGGTAAGGGTGGTAAGCAATTGCATAGCAATGCCAATAGCTACCTGCGTATCTTGTGAACAA
TCTTATGTTTCTATACGGAACAGTTCAATAGCTACCTGCGGAAAGAGTAGCTAGTATTATATCTGATCAAAAAATCTTGA
TTATCTTCATTTTCTCGAAATACTACTTGCATTGTAGATGGTGACTATCAAAGACTTAAGGAGTCATAGCAAAAAAAAAA
AAAAAGACTTACCGAGGAAGGCATGGCGTTTCAGCGTGTAGTATATATACAAGTACTAGCTACTCTCCTTCGAGCCCCCC
CGTGCAAGTAGATTGGGAGTACGTTCATATATTTTCTTCCCCACGAAACTAATCGCTGTCTACGTATCAGAGACTATCAT
CGAACCATGACTCTTATCTCCACGGGAGGGCCGCCTCATGCTCCGTCGTCGGAGATCTCCCACCGCGCCC------ACCC
GGGGCACAAGCTGATGCTGGTGCCGACGGGCCAGGCCGTGTTCAAGTGCGACGGCTGCCATGAGCACGGCACGGGCGGCG
ATAGGTACACCTGCCTGCAGCCGTCTTGCGACTTCGACCTCCACAAGGACTGCGCCCTCGCACAGC---CCACCTTCAAG
CACCAGCTGCTGCCCGATAGCACGTTCGAGCTCTCCTTCGAGCCCCCCCGTGCCAAGCACAGGCAGCTATGCAGTGCCTG
CGGCGACTACGTGAAGGGCTTGCACTACCACTGCTACAGCAAGGACCTGTACCTCCACCCGTGCTGCGCCAAGCTGCCTC
TGGAGATCCGTCTGGGTGATGAGCTCAAGTTCGAGCTCCGCCCGGAGGTGTCTCACTGCTGCACCAAGTGCAGGAAAGGT
GGCGGCGTCAGGGATTTCTGGTTCTACCGCTCCACCTGCAAGACCGTGTACCTGCATGTCCGCTGCGTGATAGAGGATGT
TCTTCTGCCGAGCTCAAGTTCAAGTACCGAGTCCGACGTCGACGGTAATGGCAGGCTGGCCCGTTACTTCAGGGAGAGTA
CGTCGCGGAAGCAGGGGTCAGGGAAGGCCGGGAGGAACTCCGACCCCATATTCGAGATCATTAAGGCCCTGGCGAGCATC
ATCATCGCGGTACTCACTGGAAATCCGGTGCCGTTAATTCCTGCAGTGATCGATCTGGGCTCCAACGTCATCAAATCGTT
GAAAAACAGGTAGCTAGCAGCTTCATCCTGCTTGCTCATCCTCATCGTACGCACGACGT----ACTTGTTGGTGACGGGT
TGCATGATGACATATATTGTACGTAGTATACTAGCGACTATGTGTTCCATAGTGCTTGTTTGTTTCACTTCATGATTTGG
TAATCATACAGCGATTACTATACTCTCGTGAGCTGTATACTCTCGTATATACTCCCCGCCTACTTTGTACTATATTTTGC
TCCCTCCCTCACATAATGTAAGACGTTTTTTGACACTACACTAGCGTTAAAAAATGTCTTACATTATGGGATGGAGGGAG
TATATGTTGGCGCTGTCCATTTCTCATTTCTTCTTTCATGCATGTCGAATACTGTAAACACATTGTTATATGTGATTGTG
TGCAATAAATCTATCTTACGAGTTTGAGATGGGTAATGTCTTTCTGTTATTGTGTTCTTTTTTATGTATTTTTTCCTAAT
TATTGTTCAGAAAAATCATACAAAAAAGTGTATAGCTGTGTACATCACAATGATAATTGTTGTGTACTTCCTCCGTAAAG
AAATGAAACGCTCTTATATTTCTTTATAGAGAGAGCACTTGTATCAGATATATATGGTTGTGTGCACCGCGATGGTGCAT
AGGCTGGGAGTTTCAACCTCCTTTCTGAAAGAAAATACATCTTATTCTGACGGCAATAGTGATCGTTCGTTGTCCCGAAA
TTTCATAGTAATTTTTGTTGTGTTTGAGATATTTTGTACTTCTGGCGAACTTTTATACTCCCTCCAATCCATACATGTTA
TATATTCATTTGTATCTAGATTCTAGACAAGTCTAACAAAAGTAATGGAGGGAGTAATAGATCTGATCTTTTTTCGCAAA
AAAAAAAATCCGGGTCTTCAGCTAAAAAGAAATCAGGTCTTCAGCAAAACGTGTTTGTAGGATAGTGCACAGACCCCGTC
GTCGTCTCCCACATTCCTAGGCACATCCATCAGTTAATCAGGGATAGCGTGTGTCAGGTGTCAATGGAGTAGGACGATAT
CACTGCCGGTGCTGGAGGATTAAAACTGAAAAGCCTAGTCGTGGCTGACTTGCATACCTATTCCCGGTCTTCAAGCTACT
ACGGGAAGATTAGTCACAGCAGGAAACTACTCATGAAAGCTACTCCTAGCGTAACGTGTAACCGAGAAAACTACTCATAC
GTTGGCTAAAGTATATGGTTGGAACTACGTACACGGAGAAGTTGGTCTTGGTGTTTTGTGATTGAGAAACTGCCACGTGG
CTTCATCATGATGGGTCTAACTATTCCGTTAGTTAGACCTGGTCTCATAGAATATATTTTTCCCATATGATTGATGCTTG
TATGTTACGGTCATATGGTAACTCATCGAATTCAAATATTTCAG
>chr2D_1125
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----CCATGACTCTTCTCGCCACGGTTGGTCAGCCTCATCCTCCGTCGAAGGTGATCTCCCGCCGCGAGCACTCCAACCG
GGGGCACCAGCTGATCCGGGAGCCGACGGGCCAGTTCAAGTTCCAGTGCAACGGCTGCCTCGAGGAAGTCAGGGGGTGCG
ACAGGGACACGTGCAAGCGC------TGCGACTTCGACCTCCACCAGGCCTGCAACCTCCAAGAAGGGACCACGCTGGAG
CACGGGCTGCTGCCCGAGAGCAGGTTCGTGCTCCGCCTCGAGGCCCCCCCTTCCAA------GCAGCGATGCAGCGCCTG
CGGCACCCACACGCAGGGCACCCACTACCACTGCGAAGGGACGGGCCATTACCTCCACCCGTGCTGCGCGATGCTGCCTA
TGGAGATCAAGCTGAGTGATGAGCTCAGGTTCGAGCTCCGCGAGGAGGTGTCTCACTGCTGCACCAAGTGCAAGAAAGGA
GGCGGCGTCAGGGACTACTGGTTCTACCGCTCCACCTCCAAGAAAGTGTACCTGCATGTCGGCTGCGCGAGAGAG---GT
TCTTCTGCCGAGCTCAAGTAGTACTACCGA---------------------------------------CAAGGAGACTG
CGTTACGGAAGCACGGGTCGGGGAAGGCCGGGAGGAACCCCGACCCCTTCTTCGAGATCGTTAAGGCCCTGGCGAGCATC
ATCATCGCCGTACTCACTGGAAATCCGGTGGCGTTAATTCCTGCACTGATCGATCTGGGCTCCAACGTCATCAAATCGTT
GAAAAACAGGTAGCTGTATCCTTGCC----------------CATCCTACGCACGTACGCACAACTTGTTGGTGACAGGC
TGCATGGTGATATATGTACGTACGTA------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS-----------S--S------SS--S-S-------S--------SS--S--------S-----SS----------S
-------S-------S-S--S-------------SS-SS----S-----S---------SS---S-S-S--S---SS---
-S---S----S---SS--SSSSSSSS------------------S---S----SS----SS-S-SS-------SS-SS--
---SS------------S----S-----S----SS-S-----S------S-S----SSSSSS-----S------S-----
----SS-S--SS-S-----SSS------------S-SS-S-S--S--SS--------------------S-S-------S
--------SSS---S------------S-------------SS-----------------------------S------S
--------------S-S--------------------S-----SS---------------S------S--S----SSS--
-------------------SSS-S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-----S-S
---SS--------S-----S------------------S--------S-S---------S--------------------
--------S---------------------S--------------S----------------------------------
---------------SSSSS---SSSSSSSSSSSSSSSSSSS----S--------SSSS-----------------S--S
------S---S----S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_361
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---------------------GATGTGTGTGTTGTGGTGGC---------------------------------------
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>reverse_1953
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--------------------------------TGCTCATCCTCATCGTACGC----------------------------
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>forward_1394
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--------------CGATAGCACGTTCGAGCTCT----------------------------------------------
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>reverse_2554
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-------------------------------------------------------------------------GGTGCAT
AGGCTGGGAGTTT-------------------------------------------------------------------
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