>input_sequence_54813
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----------------------------------ATGGAAAGCTCCTACAGTTCAGCCATGCCGATGGAGACCGACATGA
TGTCGCAGTTCCTCGGAGGCGACCACCACTGCTTCGCCTACGAGCAGCAGGACGAGTCCATGGAGGCAATGGCGGCCATG
TTCTTGCCTGGCCTCGACACCGACTCCAACTCCTCCTCTAGCTGCCTCAACTACGACGTGTCTCCACAATGCTGGCCACA
ACCCCAGCCTCAGCCAGGCCATAGTTCCAGCGTCACCAGTTTCCTTGATCCGGCTCACGGCTATGAGAGCTTTGAGTTCC
CAGTGATGGACCCCTTCTCGCATGCCGAATTCCAGTCCCATTGCACCGACATCCCCTATCTCATCGGCGGCAGTGAGGAT
CTGAGTCCTCTAGACAGCAACTGTGCACCAGCCGGAGGTGAAGAAGCAGCAAATGATCATACACCCGTGACTAACAAGAG
GAAGTCCAGAGCTGCCACCACGGTAAGCTTTCAGAAATTTCAATGGATTGGTCACTTAATTCAGTTGCAATGTTGCTTTG
ATCCATACTTATCATAATTATGTACCGATGCAGGCATCAAAGAAGGCCAAAAAGGCTGCCAAAAAGGATCTCACCAGCAA
CGACATCGAAGGCGATGACACCTATGTCATCGATCCTCAAAGCTCCAGCAGCTGCACCTCAGAAGATGGGGATTTGGATG
GCAATGCCAAGTCGGGCTCGAAGAAGACAGGCACCAGAGCCAGCCGTGGAGCAGCAACTGATCCTCAGAGCCTCTATGCA
AGGGTAAGTACGCAGCACACAACATCACAGAGTGCAACAAAACAGATGATAAAGGTTGCATGGTGAATGAAGGGCTTGTT
TCTGAATTCTAATGGGTGTAA-ATTGATATCAATTCTGCAGAAAAGGAGAGAGAGGATCAATGAAAGATTGAAAACCCTG
CAGAACTTGGTTCCCAATGGAACAAAGGTAGGTTCCTGTCTGGGATGTATTGGTCTGCAAGGACCTATAATTTGTACCTA
TATATCTTGGTACGATAAATTGAGGTCTAACTTGGATTAATCTGGCCTGACAGGTTGACATCAGTACAATGCTAGAGGAA
GCAGTGGAGTATGTTAAATTTATGCAGCTTCAGATTAAGGTGTGT------AACATCTACATTTCCTTGTCAATCTGACC
AAATATTTGTCATAACCAAATGTACTAATTTTTCATCAACCATTCATGTGCAGTTGTTGAGCTCCGACGACATGTGGATG
TACGCACCCCTCGCTTACAATGGGATTAACGTCAGCAGTCTTGAAATGCACATCGCAGCTCTGCAAAAATAA--------
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>chr2B_1_TraesCS2B01G212700
CTACTTAATATATGGCCTTTTGGCCCAAAAAAAAGGTGTGTCTTTCTTCAACATGTAAAGAACTTGATTACATTCATATT
TGATCATTGCAGTTTTGTACCTGGTGCAAGATTGGCCACCACTTACAAGTTATTTGATCACTGT----------------
----------------------------------------TGTTTTGTGTACATAGTGCAAGATTGGCCACCACTTACAA
ATTATGTGGCTACTGCTATTTTCTTTACATAAA-GAATTTGGCACAATCTTAAAACGACATCGCAATGCTATAATTGAAC
TCACATGCATTTTTAAGAATGAAGGCAGAAATTCTGTTATCCCCCATGTTGAGGATCTGACAGCTCTTCAAGTTACAGGA
AATGGCAGCAACGTAGTAGTGCCTGCAATGCAACCTCCATGGGAAGCACAAGATCACACAGGCATCAACTGGTATCTAT-
---CTACTGATCTCAATAACAACCACACGAACTAAATTCCCATAATGATCCTGCCTGCTTCAATCCACCTCTCACCTCAA
CCTCAACCCCTCAGCTCACCACCACC---GCCACCACTTCCCACGTCCCACAAGACGAGTGATTGTGCAATTGCCAAGCC
AATCTCCTCATCACCTCCAACATAAACATATCTTCCCTGGGCGATAAACAATATCGCCACACCATCGCGGCATAATTGCG
CATGAGGGCCTTGTTTATCCCGTCGATATCAAGATCAAGAATCCGGCGGCAACACCTCAGCAGCGTCCCCACGG----GA
CGGACGGACGGTTTGACCCTAGAGATAACATTTCTTTGCTTCCAAACAGACAACTTGGTGATTGAATGATAAGGTGATTG
C-TGTACATGCTTCCGTACTTTGTCAACAATAGAGGCCAAGCCACCCT-----GCAGGGCTGCACCCTACAAATACCCTG
CACAGACACACGGCAGAAGCACTCAAGTCAAGGCATTCTCTCTCTAAAGCTAGCATACTGCCTCTCCCTTGCCTTGAGCG
GTTGAAGCCTTCCCTTCCAATTCTCCCAGCTGAAATGGAAAGCTCCTACAGTTCAGCCATGCCGATGGAGACCGACATGA
TGTCGCAGTTCCTCGGAGGCGACCACCACTGCTTCGCCTACGAGCAGCAGGACGAGTCCATGGAGGCAATGGCGGCCATG
TTCTTGCCTGGCCTCGACACCGACTCCAACTCCTCCTCTAGCTGCCTCAACTACGACGTGTCTCCACAATGCTGGCCACA
ACCCCAGCCTCAGCCAGGCCATAGTTCCAGCGTCACCAGTTTCCTTGATCCGGCTCACGGCTATGAGAGCTTTGAGTTCC
CAGTGATGGACCCCTTCTCGCATGCCGAATTCCAGTCCCATTGCACCGACATCCCCTATCTCATCGGCGGCAGTGAGGAT
CTGAGTCCTCTAGACAGCAACTGTGCACCAGCCGGAGGTGAAGAAGCAGCAAATGATCATACACCCGTGACTAACAAGAG
GAAGTCCAGAGCTGCCACCACGGTAAGCTTTCAGAAATTTCAATGGATTGGTCACTTAATTCAGTTGCAATGTTGCTTTG
ATCCATACTTATCATAATTATGTACCGATGCAGGCATCAAAGAAGGCCAAAAAGGCTGCCAAAAAGGATCTCACCAGCAA
CGACATCGAAGGCGATGACACCTATGTCATCGATCCTCAAAGCTCCAGCAGCTGCACCTCAGAAGATGGGGATTTGGATG
GCAATGCCAAGTCGGGCTCGAAGAAGACAGGCACCAGAGCCAGCCGTGGAGCAGCAACTGATCCTCAGAGCCTCTATGCA
AGGGTAAGTACGCAGCACACAACATCACAGAGTGCAACAAAACAGATGATAAAGGTTGCATGGTGAATGAAGGGCTTGTT
TCTGAATTCTAATGGGTGTAA-ATTGATATCAATTCTGCAGAAAAGGAGAGAGAGGATCAATGAAAGATTGAAAACCCTG
CAGAACTTGGTTCCCAATGGAACAAAGGTAGGTTCCTGTCTGGGATGTATTGGTCTGCAAGGACCTATAATTTGTACCTA
TATATCTTGGTACGATAAATTGAGGTCTAACTTGGATTAATCTGGCCTGACAGGTTGACATCAGTACAATGCTAGAGGAA
GCAGTGGAGTATGTTAAATTTATGCAGCTTCAGATTAAGGTGTGT------AACATCTACATTTCCTTGTCAATCTGACC
AAATATTTGTCATAACCAAATGTACTAATTTTTCATCAACCATTCATGTGCAGTTGTTGAGCTCCGACGACATGTGGATG
TACGCACCCCTCGCTTACAATGGGATTAACGTCAGCAGTCTTGAAATGCACATCGCAGCTCTGCAAAAATAAATACCACT
CTGGAGATGTGGCGCTAGCTAACACTGAACTGCATAGGGATTAATTGATTCTGGTCCTTATATATAGTTCCAATCATTAT
ACATGTATAATGTAACTATAC-TTTGTTTTACTTCATACTTTTCTTGGCATTTCCTGGGAGTTATACAAAGAAGTAATCA
TAATCATGTAAATGATCAAAGGTCACAATGATATGATTGGCCTTTTTTTTTGACCAAAATCATATGATTGGCTTCACATT
TCAGATCATTCTTTTTCATGTCACAGGGTTACGGTTAGTAACTCTAACTTATTAACTGTGTTGACATTTGAATGTATGCA
TGACTTCATAACAACACTGAGGAAAAAAGGAAGG--------GCAGAAAATATACCAGGATCCCAGTTACCGCCGGTAAT
TTACCACCAAG--TATTCAAACAAAACTTGGAAGTCAATCAAATCTGAGTATAAAGTTTGTTAAATTTGCACAAACTTCG
TTCAAACCGGTATGACTTTCGATGGTCGGTTACCGTAACCTCCAGAACACCTCCTTG-ATGCCCATACTTTCTGTGGCTC
GATCTCCCTCAGTCAC---AGACACTTATTCATGTTGCTTGATGTGTGACGATGATCCACTTACATTAACGTCTGAAAAA
TGTTCATTCTGTCTCTGTCTAGAGCTTACCTAGTTACTGCCACTAACAGCTAATTCTCCTCTTCAGTTACTACACTATTC
ATACTCTCTAGCGCTGTCGCAGCATACTGGACATGCCTTAGGAGCGCCCCGTATATCTTCCTCCGAACCCTCTCGCACGC
ATCGTTCTCCTCCTCCTCAGAAAACACGCAGTCCCTGCTGCTTCTGTCTCCCGGCCCCGGAAGCATCCGCTCGTGCCGCA
CGACATGGTTGAGCCAGTCGTCCACTCTCTTGAGCTGCTGCAGAAGCCCCGCGACCTGCGAATCACACGTCGTCGTGTAC
CCGGCCTCGTTCTCGACGTCGTCCAGGAACTTGTCGATGTACTTGAG
>chr2D_19
TTTGGCC--------------------AAAAAAAGGTGTATCTTTCTTCGGCATGCAAAGAACTTAATTACATTCATATT
TGATCATTGTTGTTTTGTACCTGGTGCAAGATTGGCCACCACTTACAAGTTATTTGATCACTGCTGTTTTGTGTACATAC
TGCAAGATTGGCCACCACTTACAAGTTATTTGATCACTGCTGTTTTGTGTACATACTGCAAGATTGGCCACCACTTACAA
ATTATGTGGCTACTGCTATTTTCTTTACATAAA-GAATTTGCCACAATCTTAAAACGACATCGCAATGCTATAATTGAAC
TCACATGCATTTTTAAGAATGAAGGCAGAAATTCTGTTCTCCCCCATGTTGAGGATCTGACAGCTCTTCAAGTTACAGGA
AATGGCAGCAACGTAGTAGTGCCTGCAATGCAACCTCCATGGGAAGCACAAGATCACACAAGCATCAACTGGTATCTATC
TATCTACTGATCTCAATAACAACCACACGAACTAAATTCCCATAATGATCCTGGCTGCTTCCA---ACCTCTCGCCTCAA
CCTCTACCCCTCAGCTCACCACCACCACGGCCACCACTTCCCACGTCCCACAAGACGAGTGATTGTGCAAATGCCAAGCC
AATCTCCTCATCACCTCCAACATAAACATATCTTCCCCGGACGATAAACAATATCGGCACACCATCGCGGCATAATTGCG
CATGAGGGTCTTGTTTATCCCGTCGATATCAAGATCAAGAATCCGGCAGCAACGCCTCAGCAGCGTCCCCACGG----GA
CGGACGGACGGTTTGACCCTAGAGATAACATTTCTTTCCTTCCAAACAGACAACTTGGTGA-TGAATGATAAGGTGATTG
A-TGTACATGCTTCCGTACTTTGTCAACAATAGAGGCCAAGCCACCCT-----GCAGGGCTGCACCCTACAAATACCCTG
CACAGACCCACGGCAGAAGCACTCAAGTCAAGGCATTCTCTCTCTAAAGCTAGTATTCTGCCCCTCCCTTGCCTTGAGCG
GTTG-AGCCTTCCCTTCCAATTCTCCCAGCTGAAATGGAAAGCTCCTACAGTTCAGCCATGCCGATGGAGACCGACATGA
TGTCGCAGTTCCTCGGAGGCGACCACCACTGCTTCGCCTACGAGCAGCAGGACGAGTCCATGGAGGCAATGGCGGCCATG
TTCTTGCCTGGCCTCGACACCGACTCCAACTCCTCCTCCAGTTGCCTCAACTACGACGTGTCTCCACAATGCTGGTCACA
GCCCCAGCCTCAGCCAGGCCATAGTTCCAGCGTCACCAGTTTCCTTGATCCGGCACACGGCTACGAGAGCTTTGAGTTCC
CGGTGATGGACCCCTTCCCGCATGCCGAATTCCAGTCCCACTGCACCGACATCCCCTACCTAGTCGGCGGCGGCGAGGAT
CTGAGTCCTCTAGACAGCAACTGTGCACCAGCCGGAGGTGAAGAAGCAGCAAATGATCATACACCTGTGACTAACAAGAG
GAAGTCCAGAGCTGCCACCACGGTAAGCTTTAAGAAATTTCAATGGATTGGTCACTTAATTCAGTTGCAATGTTGCTTTG
ATCCATACTTATCATAATTATGTACCGATGCAGGCATCAAAGAAGGCCAAGAAGGCTGGCAAAAAGGATTTCACCAGCAA
CGACATCGAAGGCGACGAAACCTATGTCATCGATCCTCAAAGCTCCAGCAGCTGCACCTCAGAAGATGGGGATCTGGATG
GCAACGCCAAGTCGAGCTCGAAAAAGACGGGCACCAGAGCCAGCCGTGGAGCAGCAACTGATCCTCAGAGCCTCTATGCA
AGGGTAAGTACTCAGCACACGACATCACAAAGTGCAACAAAAAAGATGATAAAGGGTGCATGGTTGATAAA-----TGTT
TCTGAATTCTAATGGGTGTAA-ATTGATATCAATTCTGCAGAAAAGGAGAGAGAGGATCAATGAAAGATTGAAAACCCTG
CAGAACTTGGTTCCCAATGGAACAAAGGTAGGTTCCTGTCTGGGATGTATTGGTCTGCAAGGACCTATAATTTGTACCTA
TATAACTTGGTACGATAAATTGAGGTCTAACTTGGATTAATCTGACCTGACAGGTTGACATCAGTACAATGCTAGAGGAA
GCAGTGGAGTATGTTAAGTTTATGCAGCTTCAGATTAAGGTGTGTAACATCAACATCTACATTTCCTTGTCAATCTGACC
AAATATTTATCATAACCAAAAGTACTAAATTTTCATCGAACATTTATGTGCAGTTGTTGAGCTCCGACGACATGTGGATG
TATGCACCCCTCGCTTACAATGGGATTAACGTCAGCAGTCTTGAGATGCACATCGCTGCTCTGCAAAAATAAATACCACT
CTGGAGATGTGGCACTAGCTAACACCGAACTGCATAGGGATTAATTGATTCTGGTCCTTATATATAGTTCCAATCATTAT
ACATGTATAATGTAACTATAC-TTGTTTT-GCTTCATACTTTTCTTGGAATTTCCTGGGAGTTATACAAAGAAGTAATCA
TAATCATGTAAATGATCAAAGGTCACAATGA-------------------------------TTTGATTGGCTTCACATT
TCAGATCTTTCTTTTTCATGTCACAGGGTTATGATTTGTAACTCTAACTTATTAACTGTGTTGACATTTGAATGTATGCA
TGACTTCATAACAACACTGGGGAAAAAAGGAAGGCCGGAAGGGCAGAAAATATACAGGGGCACCAGTTACCGCCGGTAAT
TTTACCACCCAACTATTCAAACAAAATTTGGAAGTCGCTTAAATCCGAGTAAAA--TTTGCTAAATTTGCACAAACTTCG
TTCAAACCGGTATGATTTTCAATGGCCAGTTACCATAACCTCCAGAACACCTCCTTGAATGCCCATTCTTTCTGTGGCTC
GAGCTCCCTCAGTCATAGTAGACACTTATTCATGTTACTTGATGTGTGACGATGATCCACTTACATTAACGTCTGAAAAA
TGTCCATTCTGTCTCTGTCTAGAGCTTACCTAGTTACTGCCACTAGCAACTAATTCTCCTCTTCAGTTACTACACTATTC
ATGCTCTCTAGCGCTGTCGCAGCATACTGGACATGCCTTAGGAGCGCCCCGTATATCTTCCTCCGAACCCTCTCGCACGC
ATCGTTCTCCTCCTCCTCGGAAAACACGCAGTCCCTGCTGCTTCTGTCTCCCGGCCCCGGAAGCATCCGCTCGTGCCGCA
CCACATGGTTGAGCCAGTCGTCCACTCTCTTGAGCTGCTGCAGAAGCCCCGCGACCTGCGAATCGCACGTCGTCGTGTAT
CCGGCCTCGTTCTCGACGTCGTCCAGGAACTTGTCGATGTACTTGAG
>chr2A_19
TTTGGCC--------------------AAAAAAAGGTGTGTCTTTCTTCGGCATGTAAAGAACTTAATTACATTCATA-T
TGATCATTGTTGTTTTGTACCTGGTGCAAGATTGGCCACTACTTACAAGTTATTTGATCACTGCTATTTTGT--ACATAG
TGCAAGATC----------------------------------------------------GATTGGCCACCACTTACAA
ATTATGGGGCTACTGCTATTTTCTTTACATAAAAGAATTCGCCACAATCTTAAAACCACATCGAAATCCTATAATTGAAC
TCACATGCAATTTTAAGAATGAAGGCAGAAATTCTGTTCTCCCCCATGTTGAGGATCTGACAGCTCTTCAAGTTACAGGA
AATGGCAGCAACGTAGTAGTGCCTGCAATGCAACCTCCATGGGAAGCACAAGATCACACAGGCATCAACTGGTATCTATC
TATCTACTGATCTCAATAACAACCACACGAACTAAACTCCCATAATGATCCTGGCTGCTTCCA---ACCTCTCGGCTCAA
CCTCAACCCCTCAGCTCACCACCACCGCGGCCACCACTTCCCACGTCCCACAAGACGAGTGATTGTGCAATTGCCAAGCC
AATCTCCTCATCACCTCCAACATAAACATATCTTCCCCGGACGATAAACAATATCGGCACACCGTCGCGGCATAATTGCG
CATGAGGGTCTTGTTTATGCCGTCGATATCAAGATCAAGAATCCGGCGGCAACGCCTCAGCAGCGTCCCCACGGGACCGA
CGGACGGACGGTTTGACCCCGGAGATAACATTTCTTTGCTTCGAGACAGGCAACTAGGTG-----ATGATAAGGTGATTG
ATTGTACATGCTTCCGTACTTTGTCAACAATAGAGGCAAGGCCAAGCCTCCCCGCAGGGCTGCACCCTACAAATACCCTG
CACAGACCCACGGCAGAAGCACTCAAGTCAAGGCATTCTCTCTCTAAAGCTAGTATACTG-CCCTCCCTTGCATTGAGCG
GTTG-AGCCTTCCCTTCCAATTCTCCCAGCTGAAATGGAAAGCTCCTACAGTTCAGCCATGCCGATGGAGACCGACACGA
TGTCGCAGTTCCTCGGAGGCGACCACCACTGCTTCGCCTACGAGCAGCAGGACGAGTCCATGGAGGCAATGGCGGCCATG
TTCTTGCCTGCCCTCGACACCGACTCCAACTCCTCCTCTAGCTGCCTCAACTACGAGGTGTCTCCACAATGCTGGCCACA
GCCTCAGCCTCAGCCCGGCCACAGTTCCAGCGTCACCAGTTTCCTTGATCCGGGCCACGGCTACGAGAGCTTTGAGTTCC
CGGTTATGGACCCCTTCCCGCATTCCGAATTCCAGTCCCATTGCACCGACATCCCCTACCTCGGCGGCGGCGGCGAGGAT
CTGAGTCCTCTAGACAGCAACTGTGCACCAGCCGCAGGTGAAGAAGCAGCGAATGATCATATACCTGTGACTAACAAGAG
GAAGTCCAGAGCTGCCACCACGGTAAGCTTTCAGAAATTTCAATGGATTGGTTACTTAATTCAGTTGCAATGTTGCTTTG
ATCCATACTTATCATAATTATGTACTGATGCAGGCATCAAAGAAGGCCAAAAAGGCTGGCAAAAAGGATTTCACCAGCAA
CGACATCGAAGGCGACGACACCTATGTCATCGATCCTCAAAGCTCCAGCAGCTGCACCTCAGAAGATGGGGATTTGGATG
GCAACACCAAGTCGAGCTCCAAGAAGACAGGCACCAGAGCCAGCCGTGGAGCAGCAACTGATCCTCAGAGCCTCTATGCA
AGGGTAAGTACTCAGCACACAACATCACAAAGTGCAACAAAAAAGATGATGAAGGCTGCATGGTTGATAAA-----TGTT
TCTCAATTCTAATGGGTGTAAAATTGATATCAATTCTGCAGAAAAGGAGAGAGAGGATCAATGAAAGATTGAAAACCCTG
CAGAACTTGGTTCCCAATGGAACAAAGGTAGGTTCCTGTCTGGGATGTATTGGTCTGCAAGGACCTATAATTTGTACCTA
TATATCTTGGTACTATAAATTGAGGTCTAACTTGGATTAATCTGGCTTGACAGGTTGACATCAGTACAATGCTAGAGGAA
GCAGTGGAGTATGTTAAGTTTATGCAGCTTCAGATTAAGGTGTGTAACATCAACATCTACATTTCCTTGTCAACC-GACC
AAATATTTGTCATAACCAAATGTACTAAATTTTGATCAAACATTTATGTGCAGTTGTTGAGCTCCGACGACATGTGGATG
TACGCACCCCTCGCTTACAATGGGATTAACGTCAGCAGTCTTGAGATGCACATCGCTGCTCTGCAAAAATAAATACCACT
CTGGAGATGTGGCGCTAGCTAACACTGAACTGCATAGGGATTAATTGATTCTGGTCCTTATATATAGTTCCAATCATTAT
ACATGTATAATGTAACTACACTTTGTTTT-ACTTCATACTTTTCTTGGCATTTCCTGGGAGTTATACAAAGAAGTAATCA
TAATCATGTAAATGATCAAAGGTCACAATGA-------------------------------TATGATTGGCTTCACATT
TCAGATCATTCTTTTTCATGTCACAGGGTTATGATTTGTAACTCTAACTTATTAACTGTGTTGACATTTGAATGTATGCA
TGACTTCATAACAACACTGGGTAAAAAAGGAAGG--------GCAGAAAATATACCAGGGTCCCAGTTACCACCGGTAAT
TTACCACCAAG--TATTCAAACAAAACTTGGAAGTCACTCAAATCTGAGTATAAAGTTCGTTAAATTTGCACAAACTTCG
TTCAAACCGGTATGACTTTCGATGGTCGGTTACCATAACCTCCAGAACACCACCTTGAATGCCCATTCTTTCTGTGGCTC
GATCTCCCTCAGTCAC---AGACACTTATTCATGTTACTTGATGTGTGACGATGATCCACTTACATTAACTTCTG-AAAT
TGTTCATTCTGTTTCTGTCTAGAGATTACCTAGTTACTGCCACTAACAACTAATTCTCCTCTTCAGTTACTGCACTATTC
ATACTCTCTAGCGCTGTCGCAGCATACTGGACATGCCTTAGGAGCGCCCCGTAAATCTTCCTCCGAACCCTCTCGCACGC
ATCGTTCTCCTCTTCCTCGGAAAACGCGCAGTCCCTGCTGCTTCTATCTCCCGGCCCCGGAAGCATCCTCTCCTGCCGCA
CGACATGGTTGAGCCAGTCGTCCACTCTCTTGAGCTGCTGCAGAAGCCCCGCGATCTGCGAATCGCACGTCGTCGTGTAC
CCGGCCTCGTTCTCGACGTCGTCCAGGAACTTGTCGATGTACTTGAG
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSS----------------------SS--------------S--------------
---------SS----------------------------------------------------S----------------
-------------------------------------------------------S------------------------
-----------------------------------------S--------------------------------------
--------------------------------------S-----------------------------------------
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-----------------------------------------------------S-------S-SSS-------S------
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-------------------------------------S--S---------------S-----------------------
--------S--------------------------------------------S--------------------------
-------------------------------------------------------------S------------------
S-------------------------------------------------------------------------------
-------S---------------------------------------------S--------S-----------------
----S---------------------------------------------------------------------------
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S-----------------------------------------------------S--------S----------------
-S---------------S----------------------------------------S---S--------S-S------
-----------------------------------------------------------------S--------------
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----------------------------------------------------------S----------S----------
---------------S----------------------------------------------------------------
----S---------S-----------------------------------------------------------------
-----------S-----------------S------------S------------S--------SS--S--SSSSS----
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-----------------S--------------------------------------------------------------
----------------------------S----------S----S-----------------------------------
--------------------------------------------S-----------S-----------------------
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------------------------SS---S--------------------------------------------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------
-------------------------------S-S--S-------------------------------------------
-------------------S---------------------------------------S--------------------
-------------------------------------S------------------------------------------
----------------------------------S-------------------------------S-------------
------------------------------------S-------------------------------------------
------------------------------------------------S-------------------------------
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------------------S-------------------------------------------------------------
----------------------------------------------------------------S---------------
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>forward_554
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-----------------------------------------------------CCTGCTTCAATCCACCTCTCA------
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>reverse_1670
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---------------------------------------------------------------------CTCACCAGCAA
CGACATCGA-----------------------------------------------------------------------
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>forward_1335
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-----------------------------------CCAGTTTCCTTGATCCGGCT-------------------------
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>reverse_2780
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-----------------------------------------------------------ATCCCAGTTACCGCCGGTAA-
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