>input_sequence_54799
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----------------------------------------CCCCCACCCACATCCCTTCCCCACCACCGACGCCGCCATC
CACATCCAGAGGCCAGAGCCATCGTCTCGTTTCCCGGCATGGAGTCCATGCTCTTGAGGGCCTCCCGTGACTTTGCTCGC
GCCGCCAGCAAGATCGCGTCGGCTGGTCGGTGGGCAGCGCCGGTGACAGCGGCTCGATCAGCCCCCTCAGATCTGAGGAG
CCGCCTCTCCTTCCACAGCGGCACCGGTGGTAACACACCCATCTCCACCGACGCACCACCGGACGAAATGTCGTCGCCCG
CTTCCTTCACCCCCCTCCCAGGTAATAACCGAATCAATATGTATTTTCCTT-----------------------------
--------------------------------GTTCAT--------CTAGATGTCCGAACGATTTAACTCTAGTAGCCTA
GCTACTTTACTCTACTCCTACAAGTAAGCTAACCTAT-----------CACTTCTGCTGCTTAATCAAT-AAGCATATGA
TATCTTTGTTTTGAGATTTACCGGTGCATCTTAAGTCAACATTTTTTTGTATGTACTGTATTTATTATATAGCATTTTGT
TGTGAATGGATGGAGCAC----ATCTTTTCCAGCTCATTCATATGTTTGGAGGTTAAAATTTGTGGATCATGTATCACAC
AAGGCAAACTTCAATTTTTGACAGCTTTTCTCATGACATATAAATGACTTGCATCTGTAGGTAAGGTGAAAATTCTGCCT
TCAGACGAGGACGTTGAGTCAGAGGAAGCCCTGTGGGCCTTGTATCTGCGCTGGTGCAACACTTTGAACCAGAAGCGTGA
CCATGATGAGATGGTTCGCCGGTTTGATGTATTCAAGGACACTGTTCGGATGGTCCACCGTGTCAACAAGGCTAAATTGC
CTTACACTCTGAAAGTAAGTGAATTCGCTGATGGGAAGCTACAAGAGTCCATGAGTCCAAAAGTGTTTGATGAA------
---TTCGCAACTCATGCAAAGGGTGGTGGATCTCGCCCTTTGGCAAATCGTCGGAAGGAAGGGGATCTCATCATTGAAAC
TGGTGAAGATGTGCCAGAATATCCCCAAATGTACTTCAAGTTCTCTGAATCTGGAGATTCCATCATCCCCTTGGAATGAA
TCATTGGAGAAGCACACGATACATGAATAGGAGAAATGCATCACACTCGAGTTTGGAGAAGAAAAAAGGATACAAGGACA
AAGATAGATCAGTATTCTGCTCTAAAGCTGAAACTCTTTGTGGGATCCATGTTACTTGATTCT--ATTATGGACGTATGA
ATTGGTTGTATATATTTACATTAATGTTGTCAAGTT-------------AGGCATAATTTCCTATCAAGGTACTTCTTTT
GAATATATCGTTGTTTTTAAG-----------------------------------------------------------
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>chr5B_1_TraesCS5B01G377800
GCGCGCGCTGGCGCCCGCCTGGCCTTGGTCGTCATGGCTTGCGTCACGGGAACCTCGCGAGGTACCCCTTGCCTTGATCT
CTCCGCCTCCTCGCGAGCCTGCCTGGTGAGGCTGTTCCTGAGGAGGCCCTGTGTCATCCGCCCCGCGAGGCTCGGTCCCT
TGCGAGGGTCTTGAGTGTTGGGTGACGAAGATGGGCCGTACTGGGCCACTGGTGGAGCCACGCCGCGGGCTGCAGGCAGG
CAAGTTTGGGGACCCCCGTTTTCAGAACGCCGACATATCTGACTCTTTCCATGACTGACAAGAAATATAATATGACAGCG
ACGACGAATGCGTGTACATGTACGCCATGATCTACACCCTGGCATTCATGGGCATCACGCCAGCGTCAGGCCTGACCACG
GTGTCCTACATGGTGTCGCGCACGGAGTCCCTGTGCAAGTGCGCACGGATGCGTACGCTCATAACAAAAAAAGATATGTT
ATTTTTTCTTGTATTAGGAAAATTATGATTTTATTTTGGAAGGTTATCGAGAAAAATCGTATGTATGTCTTTTAGGAAGG
TGATCTCACATAAGTATATGATATGGTTTTTGAGTTCTTAAATACCTATTATTTATGTGGTTGAATTAAAGCAGCACCTG
CCAAGAAACAAGATCTCACATTTTAATGAAATTTGAAAAAAAAATTAATGGAGGAAGAAAATCCAGTGCGAAGGGATGGT
GAAAAGTGAGACAAAAAAACCCAACGAAAAAAAGCCAGACGTAAAAAAATCAGACAAAAATAAAACGCGGGTCATTTGGA
GTAGAGATAGCGCTCTCGCGCCGAGCGAGGGCTTTACTGGGCCAAGCTGTGTCAACTTGCGCAAAAGGAAAATGCCATAC
GAGCGAGCTGATGGGCCGTGCCACCGGAGGTCCTAACCAGACGCTTCTGGAGTTCTTCAGATCCCGGAACCCTAACGCTC
GCTTATATAAAGGAAACAGGAGAAGCGGAGCGGCGCCCTCCCCCCACCCACATCCCTTCCCCACCACCGACGCCGCCATC
CACATCCAGAGGCCAGAGCCATCGTCTCGTTTCCCGGCATGGAGTCCATGCTCTTGAGGGCCTCCCGTGACTTTGCTCGC
GCCGCCAGCAAGATCGCGTCGGCTGGTCGGTGGGCAGCGCCGGTGACAGCGGCTCGATCAGCCCCCTCAGATCTGAGGAG
CCGCCTCTCCTTCCACAGCGGCACCGGTGGTAACACACCCATCTCCACCGACGCACCACCGGACGAAATGTCGTCGCCCG
CTTCCTTCACCCCCCTCCCAGGTAATAACCGAATCAATATGTATTTTCCTT-----------------------------
--------------------------------GTTCAT--------CTAGATGTCCGAACGATTTAACTCTAGTAGCCTA
GCTACTTTACTCTACTCCTACAAGTAAGCTAACCTAT-----------CACTTCTGCTGCTTAATCAAT-AAGCATATGA
TATCTTTGTTTTGAGATTTACCGGTGCATCTTAAGTCAACATTTTTTTGTATGTACTGTATTTATTATATAGCATTTTGT
TGTGAATGGATGGAGCAC----ATCTTTTCCAGCTCATTCATATGTTTGGAGGTTAAAATTTGTGGATCATGTATCACAC
AAGGCAAACTTCAATTTTTGACAGCTTTTCTCATGACATATAAATGACTTGCATCTGTAGGTAAGGTGAAAATTCTGCCT
TCAGACGAGGACGTTGAGTCAGAGGAAGCCCTGTGGGCCTTGTATCTGCGCTGGTGCAACACTTTGAACCAGAAGCGTGA
CCATGATGAGATGGTTCGCCGGTTTGATGTATTCAAGGACACTGTTCGGATGGTCCACCGTGTCAACAAGGCTAAATTGC
CTTACACTCTGAAAGTAAGTGAATTCGCTGATGGGAAGCTACAAGAGTCCATGAGTCCAAAAGTGTTTGATGAA------
---TTCGCAACTCATGCAAAGGGTGGTGGATCTCGCCCTTTGGCAAATCGTCGGAAGGAAGGGGATCTCATCATTGAAAC
TGGTGAAGATGTGCCAGAATATCCCCAAATGTACTTCAAGTTCTCTGAATCTGGAGATTCCATCATCCCCTTGGAATGAA
TCATTGGAGAAGCACACGATACATGAATAGGAGAAATGCATCACACTCGAGTTTGGAGAAGAAAAAAGGATACAAGGACA
AAGATAGATCAGTATTCTGCTCTAAAGCTGAAACTCTTTGTGGGATCCATGTTACTTGATTCT--ATTATGGACGTATGA
ATTGGTTGTATATATTTACATTAATGTTGTCAAGTT-------------AGGCATAATTTCCTATCAAGGTACTTCTTTT
GAATATATCGTTGTTTTTAAGCTTGCAATTTCTATGTGGACCCACTCTCGCGAGCGTTCCTCGATTTCGCTGCGTTTCTT
GTTGGTCGATGGTGCCTGGTCGGGTCAAGGCAAGCATGGAATTTTTTTTCAATGTGTACATGGATTCAGCAGGCCCTATT
TGGCGCAACGGGTCACACACTTCATTATTCGTATTTTCAATGTGTACATGGATTCAGTAGGCCTCTATGCTATTTGGCGC
AACGGGTCACACACATCATTGTTCGTGGGCTCGGCTA---AGCACAACGCAAAGAGTTTTTTATTTCATGCACAAGAAAA
ATAAAAGTTTGGTGCTGCTAAAATATACATCCCTAACTGGTCTATACATTTTATACAAATATGT-TTTTTTAACTTAGAT
TTTTCATCGTGATAACCATATTTTCAACTAAAACAATGCTTCCTTAGCTGGTTAGTACATGTTATACATTTTTTTCAAAC
TTCTACTACCAATATCAAATATGTCCTTACAAAATAGTTTCATGGACAACATGGTTTTAGCGGGTCTCTTCGCCATTCGG
CGCAACGAGTCAACTAGTATGAGTAAAAGAAATCTCCCTCGAGTCATCTGCCATCATCCGTCGGATCTCCTCAACAAGTA
TGCGGTGCTGCGACCGGTTCTCCAAGGGTGCTGTAATCATCGACACGGCTTTTGCACAGTCCAATTCCACCATGATCGGC
AAATTTGTCCTGTGCAGGGCCAACGCTAGGCCCTCTCTACATGCTGCTAGCTCCGCGTGAAGACCATTGTCGCATGCATG
CATCTCCCTACACGTTGTATATAGAATTTCACCTCTCTCGTCCCGTAGAAGCATGCCGCCTCCTGCTTTTGAGTGGTCCG
CTCTCCCTCATGCAGCACCATCTTCCCTTTCTCACTACTAGGGAAAAGCTTATAGGCAGACACTTACTAGTAGCGAAGGT
TTATAACCCTCGCGGCTGCTACTTACTAGTAGCACAAATTTATAACCCTCGCTACTACTAAGTTG
>chr5B_1021
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------------------------------------------------------------CCACCACCGACGCCGCCATC
CACATCCAGGAGCCAGAGCCATCGTC-----------------------------------------TGACTTTGCTCGC
GCCGCCAGCAAGATCGCGTCGGCTGGTCGGTGGGCAGCGCCGGTGACAGCGGCTCTCTCAGCCCCCTCAGATCTGAGGAG
CCGCATGTCCTTCCACAGCGGCACCGGTGGTGACATACCCAGCTCCAGCAACGCACCACCTGACGAAATGGCATCGCCCG
CCTCCTTCACCCACCACCCAGGTAATAACCAAATCAATATGTATTTTCCTTAAACCACAAAAAAATAATATCTATTTTCC
TTGTTCATGATTTTTTTTTTGCGGAGTTCCTTGTTCATGATTTCATCT--------------------------------
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---------------------------------------------------TATACTGTATTTATTATATAGCCTTTTGT
TGTGAATGGATGGAGTACGTATATCTTTTCCAGCTCATTCATATGTTTGGAGGTTAAAATTTGTGGATCATGTATCACAC
AAGGCAAACTTCAATTTTTGACAGCTTTTCTCATGACATATAAATGACTTGCATCTGTAGGTAAAGTGAAAATTCTGCCT
TCAGACAAGGACGTTGAGTCCGAGGAAGCCCTGTGGGCCTTGTATCTGCGCTGGTGCAACACTTTGAACCAGAAGCGTGA
CCATGATGAGATGGTTCGCCGGTTTGATGTATTCAAGGACACTGTTCGGATGGTCCACCGTGTCAACAAGGCTAAATTGC
CTTACACTCTGAAAGTAAGTAAATTCGCTGATGGGAAGCTAGAAGAGTCAATGAGTCCAAAAGTGTTTGATGAACCTGAA
TATTTCGCAACTCAAGCAAAGGATGGTAGATCTCGCCCTTTGGCAAATCGTCGGAAGGAAGGGGTTCTCATCATTGAAAC
TGGTGAAGATGTGCCAGAATATCCCCAAATGAACTTCAAGTTCTCTGAATCTGGAGATTCCATCATCCCCTTGGAATGAA
TCAT----------------------------------------------------------------------------
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>chr5D_1033
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------------------------------------------------------------------------CCCCCATC
CACGTCCAGAGGCGGGAGCC-TCGTCTCGTTTCCCGTCATGGAGTCCATGCTCTTGAGGGCCTCCCGTGACTTTGCTCGC
GCCGCCAGCAGGATCGCGTCGGCTGGTCGGTGGGCAGCGCCAGTGACAGCGGCGATCTCAGCCCCCTCAGATCTGAGGAG
CCGCCTCTCCTTCCACAGCGGCAC------TAACATACCCAGCTCCACCAACGCACCACCCGAAGAAATGGCATCGCCCG
CCTCCTTCACCCCCCACCCAGGTAATAACCAAATCAATATGTATTTTCCTT-----------------------------
--------------------------------GTTCATGATTTCATCTAGATGTCCACACGATTTAACTCTAGTAGGCTA
GCTACTTCACTCTACTCCTACAGGTAAGCTGTAAGCTAATGTATCATGCACTTCTGCTGCTTAATCAATCAAGCATACGA
TATATTTGTTTGGAGATTTACCAGTGCATCTTAGGTCAACATTC-TTTGTATATACTGTATTTATTATATAGCCTTTTGT
TGTGAATGGATGGAGCGC----ATCTTTTCCAGCTCATTCATATGTTTGGAGGTTAAAATTTGTGGATCATGTATCACAC
AAGGCAAACTTCAATTTTTGACAGCTTTTCTCATGACATATAAATGACTTGCATCTGTAGGTAAGGTGAAAATTCTGCCT
TCAGACGAGGACGTTGAGTCAGAGGAAGCCCTGTGGGCCTTGTATCTGCGCTGGTGCAACACTTTGAACCAGAAGCGTGA
CCATGATGAGATGGTTCGCCGGTTTGATGTATTCAAGGACACTGTTCGGATGGTCCACCGTGTCAACAAGGCTAAATTGC
CTTACACTCTGAAAGTAAGTAAATTCGCTGATGGGAAGCTA------TCCATGAGTCCAAAAGTGTTTGATGAACCTGAA
TATTTCGCAACTCATGCAAAGGATGGTGG---------------------------------------------------
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>chr5B_2067
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TCATTGGAGAAGCACATGATAAATGAATATGAGAAAGGCATCACACTCGAGTTTAGAGAAGAAAAA-GGATACAAGGACA
AAGATAGATCATTATCCTGCTCTGAAGCTAAAACTTTTTGTGGGATCAATGTTACTTGATTCTGTATTATGGAAGTATGA
CTTGGTCATATATATTTACATCAATGTTGTCAAGTTGTGGTTTAGCAATAGGCATAACTTCCTATCAAGGTACTTCTTTT
GAATATATCGTTGTTTTTAAGCTTGCAATTTCTATGTGGACCTACACTCGCGAGCATAG---------------------
----------------------------------------ATTTTTTTTCAATGTGTACATGGATTCAGCAGACCTGTG-
-------------------------------------------------------------------TGCTATTTGGCAC
AACGGGTCACACACATCATGGTTTGTGGGCTGGGCTAGGTAGCACAACACAAAGAGTTTTTT-TTTCATGCACATGGAAA
ATAAAAGTTTGGTGCTGCTAAAAAATACATCCTTAACTAGTCTATACATTTTATACACATATGTTTTTTCTAACTTAGAT
TTCTCATCGCGATAACCATATTTTCAACTAAAACAATGCTTCCTTAGCTGGT----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
------------------------------------S-------------------------------------------
-------------------------------------------------------SS-----------------------
-----------------------------------S-----S-------S----------S---------S-S-------
-S-------------S--------------S-------------------------------------------------
--------------------------------------------------------SS------------------S---
-------S--------------S-------SSSSSS-----------------------------------------S--
---S-------S----------S----------S---------SS-------S--------------------S------
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--------------------S--------------------S--------------------------------------
----------------------S-----------------------------------------S---------------
-------------------------------S------------------------------------------------
----------------S----S-------S------S-----------------S-----------S-------------
-----------S---S-------S-----S-----S-----------S-------------------------S------
S-----SS-------------S-----------------------------------S----------------------
------------------------------------------S--S---------S-SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------S--SSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------S-
-------------------S---S-------S----------------S-------------S-----------S-S---
-----------------------S--------S-----S------------------S-----------S----------
--S------S------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_859
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---------------------------------------GGCCAAGCTGTGTCAACTTG---------------------
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>reverse_2466
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-----------------------------------------------------------------TTCGCTGCGTTTCTT
GTTGG---------------------------------------------------------------------------
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