>input_sequence_54782
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--------------------ATGGAGTGCAGGAAGATGAAGCCCGTCCTTGCTCTCGTGCTGCTGCTGTCGTGCCATCTT
CTTCTTCCGCTGGTCTCCTCTGTGCCCGTGTCGAGTAAGTGATTGACCCCAT-CCCCATGCATTCAAGAATGCATGGACC
TTCCTTTCAAAAAAAAGAATGCATGGACCTTAATATCAGTTCATCTTCTTTCTTGGCATGTGTGATGTGTCTGTGCATGC
ATGTCAG---TTTCGTGCCTGTATTTATGCATCCTTGTTCTTGGATGTAGGAAGCGTGTCCTTGGCAAATCATCAAGCCT
CAGCTTCTAGTCTGACTCCGGAGGCGGTGCCTGTTCAGGTCAATCTCTCTCCCTCTACCTGATGCCTTTGCCGTTCTTCT
ATATGTA-----TATTTCTGTTCCTTAAGCGGATTAAACTAGTTGTGGCTTGATGATAGATGCCGAATGTTACTTGTACA
CAGTCATA----CGTACCTGGCTCTGGCTGCTTCCTGCTTCCCAGTGGCCGGAGCCGCCACCATAGATGGCTTGCCTGTT
CCCTTGTCCGTTCAGTCGTTCAGAGGCTCGAAGCTAGCGCATAACATTGTGCCGTGACGGCACTAGCTAAGCAGGAAACA
TAATAATTGATAGTTCTTTCTACTCCCTCCGTCCTATAATGTAGGATTAAGACATTTTTTGACACTGGAGTGCATATTAA
CCATTTGACTAGGGAGCTA---AGCGCACTCACGCTGAGGGTTTAAGTCAAGTGCTTTCTGTAGCTGGTGTCCACGATAG
AGCACTCATCAGTCAGCCACTCACTGACGCGGCACCCACAGTTTGACAAAATCACAAAATCGCATGTGACCTTTGGACGC
TCCGAAGAGCATACCCGAAGCTGCGTCGGCCGGTTGCTAGCTAGTGCAGTGATCCCATGTCCAGTCACATGCATGCACGG
CTAGATAAGCGCGGCCTGCCGGCCACAGTGCAGCCCACATGCGTGGCCACTCCCCATAAGCCATACTTGT----------
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--------------GTAGTTGCATTGCACCCATCCACACGATCGAAAGGTCCACCTCGCTCGTGCAAACAAGAACATTCC
CAGTGCGCGGTGTGGTGTTTGCCTGCAAGTTGCAAACTGAGTGCATGCATCTAGAATATGTATATTCAGCTTGAGGTGTG
TGACACCACTAACGTGGTTTGTGTTGTTCATACAGGGCGTCGTGACGACGGGCG------CCGAGGAGCAAAGCGTCGTC
GGCGAAGTGGTGGCGCGGATGGACATCGAGATCAACGACTACCCTGGATCCAGCGCCAACGGCCGCCATGAGCCGCCTAG
GAGCCCTGGGAGGGGGTGA-------------------------------------------------------------
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>chr3A_1_TraesCS3A01G338900
TAACATTTTTTAAAAATACAAGTAAATTTTATTTTTGTAAATATGTATGTTTAGAATATTCTAAAGTATAAAGAAAAGTA
AAAAGGAAAGAAATCAATACGGGAAACCCCAGAAAAAAACGATTCAGTGGATTCCTGCATGCCTGGGCCGGCCCAGTATG
GCGCTCGCTTCAGGCGAGGCTACGATCGAACTCGCGTCGAGCGAGGTATAGGCGCGCCCTTGCCGTACCC-------TCA
CAAATAAATCTACGAATGCCGGACTACTCTACAGAAACGGACGCATGGAACGCAGATAGAAATGCACGACGATATTTCCC
GTGGATATTGATATTTCCTCTACTAGCTACTGAT-----GATATTTCGCCTGGATCGACGCATGTGCGGTGCCGAC----
---GCCCGATCTACCGAGCATCCACTGCATCCGAGCTCTCC--GACTCC-GACGCACTCTGCGGCGTCGTTGACCACCAC
GGCCCAATCATACGGGAGCACGCGTGATGTTCAGCCTCCGCAC-ACGCATCGCCCCCACTGTGCCGGGCACATTGCGATG
CGCACTCGTCGACGCGCCGGGCCTGCGCACGCGACACCTCGCCCTTGGCCGCAGG--TCAGTGTCACCCAGCTCAGACGC
ATGAACGCGGA---------CGGACGGACGGACGGATCCAGCCGGAAAAATCCAGAGAAGCGAAAAGGCCCCAGC--GCA
GCACAGGCACTATAGTGCGCACGCAGAGCCAAGAGGTCGACATGGCGCGTGAAGTTGACTTTTGAGCGAGAGGGAGAGAC
AAAGGACTCAGGAGAGGCCCTCCCCGTGGTATAAAATACCCCTCACACCCACCACCCAAGTCACCATTGTCGCGCGCAGC
AGCTCGATCGTAGACAAGTGCAGTGTATACTTGTGTGGCAGGCGGCGAGCGACA------------------GAAGAGAG
GCGGAGCTTGGAGGTGGATCATAGGCTGATAGCGCGCACGGTGCTCCCCTCTCCTCCTCATCGTTTTCGTTGTGGCCTTG
TGTGGTAGAGGG------CGATGGAGTGCAGGAAGATGAAGCCCGTCCTTGCTCTCGTGCTGCTGCTGTCGTGCCATCTT
CTTCTTCCGCTGGTCTCCTCTGTGCCCGTGTCGAGTAAGTGATTGACCCCAT-CCCCATGCATTCAAGAATGCATGGACC
TTCCTTTCAAAAAAAAGAATGCATGGACCTTAATATCAGTTCATCTTCTTTCTTGGCATGTGTGATGTGTCTGTGCATGC
ATGTCAG---TTTCGTGCCTGTATTTATGCATCCTTGTTCTTGGATGTAGGAAGCGTGTCCTTGGCAAATCATCAAGCCT
CAGCTTCTAGTCTGACTCCGGAGGCGGTGCCTGTTCAGGTCAATCTCTCTCCCTCTACCTGATGCCTTTGCCGTTCTTCT
ATATGTA-----TATTTCTGTTCCTTAAGCGGATTAAACTAGTTGTGGCTTGATGATAGATGCCGAATGTTACTTGTACA
CAGTCATA----CGTACCTGGCTCTGGCTGCTTCCTGCTTCCCAGTGGCCGGAGCCGCCACCATAGATGGCTTGCCTGTT
CCCTTGTCCGTTCAGTCGTTCAGAGGCTCGAAGCTAGCGCATAACATTGTGCCGTGACGGCACTAGCTAAGCAGGAAACA
TAATAATTGATAGTTCTTTCTACTCCCTCCGTCCTATAATGTAGGATTAAGACATTTTTTGACACTGGAGTGCATATTAA
CCATTTGACTAGGGAGCTA---AGCGCACTCACGCTGAGGGTTTAAGTCAAGTGCTTTCTGTAGCTGGTGTCCACGATAG
AGCACTCATCAGTCAGCCACTCACTGACGCGGCACCCACAGTTTGACAAAATCACAAAATCGCATGTGACCTTTGGACGC
TCCGAAGAGCATACCCGAAGCTGCGTCGGCCGGTTGCTAGCTAGTGCAGTGATCCCATGTCCAGTCACATGCATGCACGG
CTAGATAAGCGCGGCCTGCCGGCCACAGTGCAGCCCACATGCGTGGCCACTCCCCATAAGCCATACTTGT----------
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--------------GTAGTTGCATTGCACCCATCCACACGATCGAAAGGTCCACCTCGCTCGTGCAAACAAGAACATTCC
CAGTGCGCGGTGTGGTGTTTGCCTGCAAGTTGCAAACTGAGTGCATGCATCTAGAATATGTATATTCAGCTTGAGGTGTG
TGACACCACTAACGTGGTTTGTGTTGTTCATACAGGGCGTCGTGACGACGGGCG------CCGAGGAGCAAAGCGTCGTC
GGCGAAGTGGTGGCGCGGATGGACATCGAGATCAACGACTACCCTGGATCCAGCGCCAACGGCCGCCATGAGCCGCCTAG
GAGCCCTGGGAGGGGGTGAAGTCGATCCGCAGAACCTCCGTGTATAGGGAGATTAGTAATGGGT-----TAGTCTAGTCT
AGATAGCACTTGTTGGTGATGACTCA-----------TGAGTTCAACGGGTTAAACATGTCC--------------GAGC
AAGGAAAGAAGCATTCTAACTACTTTCTAATAGTGTCAAAATTGGTCTTACATTTTGATACAGAGGGAGTATATTATATG
TGTGTGCCCCTATGTTCATGTTTTTCATTCTTTTAATATAGTATGTCCATGTGTGTCTGTCAATGCCGACCATCGCTC-C
AGGGCTCCCTCA-ATCGCTCTCTCTAGGGCGATCAAGGGGCCAACCCCAGCGCCCCGGCTGCCGCCT------CC-TCTC
CTCCACCTCGTCGTCCCTAGAGACGTGCGCCGACTAAGCCCGGGCGCCACCGGTGATGGGGATGACGGGAATCTAGGTTG
CAGCCCCACGGTATGGAGGGCCCGGCGACGCGAGATCGCCCTTCGGTCTTTGTCTTTCCCGGCGGTTCGGCGCTACTCCG
GCGGCTTGGTCGGGAGGGCGGA----TCAGGAGGGGATGTGGCCATGGTTGACTGGTCGGCGGCGCCTCCGGTCAGATCT
GATCTGGCCGGTGCCGC-TGGCGGTGGTGGCTATCTCCTTCGTCGGAGGTGGTCGACACGAGGCTGCATGATCAGATCTC
GAGATCCGCCATCTACTTCCGGCTGCGAGTCGGGAAGACA--TAGTTGGCGGTGAAAACCGAACCGATGGCAGGCGATGG
CGATG-TTCTGCGTCGTTACCTTGATGAAGGCATCATCGTGTAACTACTGTCGACCCACTCGTGCTGCTCC-GGG-GGAA
ACCCTAGGATCTGGTCT-CCAGATCAGACGATGACGGTATTGCGGTGTCGTTTTCTCTCTTGCGAGCATTGTTTGTGGAG
CAGAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGTTTCGTCTTGCATGGAGCTTTCGATGGAGATGTCAAGTCATGCCTG
GCCGACAGGTGCTACGCTGTGTCATGCCT
>chr3D_21
--------------------AGTAAAGTTTATTTTTGTAA-TATATACGTTTAGAATATCGGAAAGTATTAAAGTACAAT
AAATAAATCAAAAACCAAAAAGACCCAGA---AAAAGAATGATTCAGTGGATTCGTGCGCGCCTGGGC-GGCCCAGTATG
GGGCTCGCTTCAGGCGAGGCTACGATCGAACTCGCGTCGAGCGAGGTATAGGCGCGCCCATGCCGTACCCTCAAAAATCA
AAAATAAATCTACGAATGCCGGACTAGTCTACATAAACGGACCCACGGAACGCAGATAAAAATGCACGACAGGAGCAGAT
AC-----------------CTACTAGCTACCGTCCTACCGATATTTCCCGTGGATCCACGCATGCGGT------------
---------------GAGCATCCACTGCATCTGAGCTCTCCTGGACTCC-GACGCACTCTGCGGCGTCGTTGACCACCGC
AGCCCAATCATACGGGGGCACGCATGATGTTCAGCCTCCGCACGGCGCATCGCCCCCACTGTGCCGGACACATTGCGATG
CGCACTCGTCGACGCACCGGGCCTGCGCACGCGACACCTCGCCCTTGGCCGCAGG--TCAGTGTCACCCAGCTCGGACGC
ATGAACGCGGA---------CGGACGG--------GTCCAGCCGGAAAAATCCAGAGAAGCGAAAAGGCCCCAGCA--CA
ACACAGGCACTGTCGTGCGCACGCAGAGACAAGAGCTCAACATGGCGCGTGAAGTTGACTTTTGAGCGGGAGGGAGGGAC
AAAGGACCAAGGAGAGGCCCTCCCCGTGGTATAAAATACCCCTCACACCCACCACCCAAGGCACCATTGTCGCACGCAGC
AGCTCGAT---AGCCAAGTGCAGTGTATACTTGTGCGGTAGGCGGCGAGCGAGAGAGCCTAGACGCTCGACGGAAGAGAG
GCGGAGCTTGGAGGTGGTTCATAG------------CACGGTGCTCCCCTCCCTTGCTCTGCGTTTTCGTTGTGGTGA--
------AGATGGCGATATCGATGGAGCGCAGGAAGATGAAGCCCGTCCTTGCTCTCGTGCTGCTGCTGTCGTGCCATCTT
CTTCTTCCGCTGGTCTCCTCCGTGCCTGTGTCGAGTAAGTGTTTGACCTCCAACCC----CATGCACGCATGCATGGACC
TTA-------------------------CTTAATATCAGTTCATCTTCTTTCTTGGCATGTGT-------ATGTGCATGC
ATGCATCTTAATTTTGAG--------------CCTTGCTCTCGGATGTAGGAAGCGTGGCCTTGGGAAATCATCTAGCCT
CAGCTTCTAGTCTAACTCTGGAGGCGGCGCCTGTTCAGGTCAATCTCTCA--CTCTACCTGATGCCTTTGCCGTTCTTGT
AGATGTACAGTATATTTCTG----TTAAGCGGATTAAATTAGTTGTGGCTTGATGATAGATGTCGATTGTTACTTGTACA
CAGTCATA----CGTACCTGGCTCTGGCTTCTT-CTGCTTGCCAGTGGCCGGAGCCGTCACCATGAATGGCTTGCCTGTT
CCCTTGTCCGTTTCAGTATTCAGAGGCTCGAAGCTAGCGCATA-CATTGTGCCGAGACGGCACTAGCTA-GCAGGAAAC-
--ATAATTGATAATTCTTTCTA--------------------------------------------------CATATTAA
CCATTTGACTAGGGAGGGAGCTAGCGCACTCACACTCAGAGTTTAAGTCAAGTGCTCTCTGTAGCTGGTGTCCACCATAG
AG-------------------CACTGACGCGGCACCCACAGTTTGACAAAATT--------GCATGTGACCTTTGGACGC
TCGGAAGAGCATTCCCGAAGCTGTGTCGGCCGGTTGCCAG----TGCACTGATCCCATCCCCAGCCACATGCATGCACGG
CTAGAT----------GGCCGGCCGCAGTGCAGCCCACATGCGTGGCCACTCCTCATAAGCCATTC--------------
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--------------GTAGTTGTATTGCACCCACCCACACGATCGAAAGGTCCACCTCGCTGGTGCAA-CAAGAACATTCC
CGCTCC-CGGTGTGGTGTTTGCCAGCAAGTTGCAAACTGAGTGCATGCATCTAGAATATGTATATTCAGCTTGAGGTGTG
TGACACTAACGC---GGCTTTTGCTGTCCATACAGGGCGTGGTGACCGCGGCCG------CTGAGGAGCGAAGCGTCGTC
GGCGAAGTGGTGGCGCGGATGGACATCGAGGTCAACGACTACCCTGGATCCAGCGCCAACGGCCGCCATGAGCCGCCCAG
GAGCCCCGGGCGGGGGTGAAGTCGATCCGCAGAACCTCCGTGTATAGGGAGATTAGTAATGGCTCTTC----TCTAGTCT
AGATAGCGCTTGAAGTCCGGAAGATACTTGTTGGTGGCGAGTCCAACGGGTTAAACATGTTTCTGCTAGCTCTCAAGAGC
AAGGAAAGAAGCATTCTAAGCACTTTTCGATAGTGTCAAAAATGGTCTTACATTTTGGGACGTAGGGAGTATATTATATG
CGTGTACCCATATGTTCATGTTTTTCATTCTTTTGATAGAGTATGGACATCTGTGTATGTCAAT----------------
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>chr3B_330
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----------------CCTCTACTAG--------CTACTGATATTTCCCCTGGATCCAAGCATGTGTGGTGCCGACTGCC
GACGCCCGATCTACCGAGCATCCACCGCAGCTGAGTTCTCT--GACCCCGGACGCATTCTGCTGCGTCGTTGACCACCAT
AGCCCAATCATACGGGAGCACGCATGATGTTCAGCCTCCGCAC-GCGCATCGCCCCCACTCTGCCGGACACATTGCG---
--CACTCGTCGACGCACCGGGCCTGCGCACGCGACACCTCGCACTCCGCCGCAGGTCTCAGTGTCACCCAGCTCGGACGG
ATGACAGCACTACGCGGACGCGGACGG--------ATCCAGCCGGAAAAATCCAGAGAAGCGAGAAGGCCCAGCACAGCA
TCACAAGCACTGTAGTGCGCACGCAGAGACAAAAGCTCACCATGGCGCGTGAAGTTGACTTTTGAGCGAGAGGGAGGGAC
GAT-------GGAGCGGCCCTCCCCGCCGTATAAAATCCCCCTCGCACCCACCACCCGAGGCACCATTGTCGCGCGCAGC
AGCTCGATTGTAGCCAAGTGCGGTGTATACTTGTGTGGAAGCCGGCCAGCGAGAGAGCCCAGATGCTTGACGGAAGAGAG
GCGGAGCTTGGAGGTGGACCATAG------------CACGCACGGTGCTCC-----CTCTTCGTTCTCGTTGTGGGGA--
------AGAGGG------CGATGGAGTGCAGGAAGATGAAGCCCGTCCTTGCTCTCGTGCTGCTGCTGTCGTGCCATCTT
CTTCTTCCGCTGGTCTCCTCCGTGCCCGTGTCGAGTAAGTGTTTGACCCCCAACCCCATGCATTCATGCACGC-------
------------------ATGCATGGACCTTAATATCAGTTCATCTTCTTTCTTGGCATGTGT-------CTGTGCATGC
ATGTTACTACTTTCGTGCATGCATTTATGTATCCTTGTTCTTGGATGCAGGAAGCGTGTCCTTGGAAAATCATCAAGCCT
CAGCTTCAAGTCTGACTCCGGAGGCGGTGCCTGTTCAGGTCAATCTCTC--CCTCTACCTGATGCCTTTCCCGTTCTTGT
AGATGTA-----TATCTCTGTTCCTTAAGCGGATTAAATTAGTTGTGCCTTGATGATAGATGCCGAATGTTACTTGTACA
GAGTCATACGTACGTACCTGGCTCTGGCTGCTTCCTGCTTGCCAGTGGCCGGAGCCGTCACCATGGATGGCTTGCCTGTT
CCCTTGTCTGTTCAGTCGTTCAGAGGCTCGAAGCTATCGCATAAGGCATAACATATTTCTG-------------------
----------------------------------------------------------------------------TTAA
CCATTTGACTAGGGAGGGAGGTAGCGCACTCACACTGAGAGTTTAAGTCAAGTGCTCTCTGTAGCTGGTGTCCACCATAG
AGCACTCATCAGTCAGCCACTCACTGACGCGGCACCCACAGTTTGACAAAATCACAAAATCGCATGTGACCTTTGGACGC
CCGGAAGAGCATTCACGAAGCTGTGTCGGCCGGTTGCCAG----TGCACTGATCCCATGTCGAGTCACATGCACGCACGG
CTAGATAAGCCGGGCCGGCCGGCCGCAGTGCAGCCCACATGCGTGGCCACTCCGGTACTCCCCACAAACCATTTGCTGTA
CTATATACTTGTATACTCCCTCCGTTTCTAAATACTTGTCTTTCTAGTCATTTCAACAAATAACTACATACGAAATAAAA
TGAGTGAATCTACACTCTAAAATATATCTACATACATCCGTATGTAGTAGTCATTTGAAATGTCTATAAAGACAAATATT
TAGGAACGGAGGGAGTAGTTGTATTGCACCCACCCACACCATCGAAAGGTCCACCTCGCTCGTGCAA-CAAGAACATTCC
CGGTGCGGC--GTGGTGTTCGCCTGCAAGTTGCAAACTGAGTACATGCATCTG---TATGTATATTCAGCTTGAAGTGTG
TGACACTGACCC---GGCTTTTGTTGTTCATACAGGGCGTGGTGACCGTGGCCGCGGCCGCTGAGGAGCGAAGCGTCGTC
GGCGAAGTGGTGGCGCGGATGGACATCGAGGTCAACGACTACCCTGGATCCAGCGCCAACGGCCGCCATGAGCCGCCCAG
GGGCCCCGGGAGGGGGTGAAGTCGACCTGCGGAGCCTCCGTGTATAGGGAGATTAGTAATGGGTCTAGCTAGTCTAGTCT
AGATAGCAC-------------------TGTTGGTGGTGAGTCCAACGGGTTAAACATGTC-------------------
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>chr3B_2576
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-----------------------------------------------------------------------ATCGCTCCC
AGGGCTCCCTCGTATCGCTCCCTCTAGGGCGATCAGGGGGCCAACCCCAGCGCCCCGGCCGCCGCCCCCT-CCCC-TCTC
CTCCACCTCGCCGTCCCCAGAGACGTGCGCCGGCGAAGCCCGGGCGCCGCCGGTGATGGGGACGGCAGGGATCTAGGCTG
CAGCCCCGCGGTCTAGAGGGGCCGTTGGCGCGAGATCGCCCTTCGATCTTCGTCTTTCCCGGCGGTTCGGCGCTGCTCCG
GCGACTTCATGGGAAGGGCGGA--TCTCAGGAAGGGATGTGGCCATGGTTGACTTGTCAGCGGCGCCTCCGGTCAGACCT
GATCTGGCCGGTGCCGCCTGGCGGTGGTGGCCATCTCCTCCGCCGGGGGTGGTCGGCCTGAGGCTAGATGATTAAATCTC
GAGATTCGCCATCTAGTTCCGGCAGCGAGTCGGGAAGACA--TAGTTGCCGGTGAAAACCGAGCCGATGGCAGGCGATGG
CGGCG-TTCTGCGTCGTTACCTTGATGAAGGCATCATCGTGTAACTACTGTCGACCCACTTGTGCTGCTCTTGAG-GGAA
ACCCTAGGATCTGGTCTTCCAGATCGGACAATGGCGGTACCGCGGTATCGTTTTCTCTCTTGGGAGCATCATTTGTGGAA
TAGAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGCTCCGTCTTGCACGGAGCTTTCGATGGAGATGTCAAGTCATGCCTG
GCCAACAGGTGCTACGCTGTGTCATGCCT
>chr3D_2576
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-----------------------------------------------------------------------ATCGCTCCC
AGGGCTCCCTCGTATCGCTCCCTCTAGGGCGATC-AGGGGCCAACCCCAGCGCCCCGGCCGCCGCCCCCT-CCCC-TCTC
CTCCACCTCGCCGTCCCCAGAGACGTGCGCCGGCTAAGCCCGGGCGCCGCCGGTGATGGGGACGGCGGGGATCTAGGCTG
CAGCCCCGCGGTCTGGAGGGACCGTCGGCGCGAGATCGCCCTTCGATCTTCGTCTTTCCCGGCGGTTCGGCGCTGCTCCG
GCGGCTTCATGGGAAGGGCGGA--TCTCAGGAAGGGATGTGGCCATGGTTGACTGGTCAGCGGCGCCTCCGGTCAGACCT
GATCTGGCCGGTGCCGCCTGGCGGTGGTGGCCATCTCCTCCGCCGGGGGTGGTCGGCCTGAGGCTAGATGATTAGATCTC
GAGATTCGCCATCTAGTTCCGGCTGCGAGTCGGGAAGACA--TAGTTGCCGGTGAAAACCGAGCCGATGGCAGGCGATGG
CGGCG-TTCTGCGTCGTTACCTTGATGAAGGCATCATCGTGTAACTACCGTCGACCCACTCGTGCTGCTCC-GAG-GGAA
ACCCTAGGATCTGGTCTTCCAGATCGGACGATGACGGTACCGCGGTGTCGTTTTCTCTCTTGGGAGCATCGTTTGTGGAT
CATAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGCTCCGTCTTGCACGGAGCTTTCGGTGGAGATGTCAAGTCATGCCTG
GCCGATAGGTGCT----------------
>chr2B_2576
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-----------------------------------------------------------------------ATCGCTC-C
AGGGCTCCCTCG-ATCGCTCCCTCCAGGGCGATCAGGGGGCCAACCCCAGTGCCCCGGCCGCCGCCCCCT-CCCCCTCTC
CTCCACCTCGTCGTCCCCAGAGACGTGCGCCGGCTAAGCCTAGGCGCCGCCGATGATGGGGACGGCGGGGATATAGGCTA
CAGCCCCGCGATCTGGAGGGACCGGCGGCGCGAGATCTCCCTTCGGTCTTCGTCTTTTCCGGCGGTTCGGCGCTGCTCAG
GCGGCTTCGTGGGGAGGGCGGA--TC--AGGGGGGGATGTGGCCATGGTTGACTGGTCGGCGACGCCTCCGGTCAGATCT
GATCTGACCGGTGCCGC-TGGCGGTGGTGGCCATCTCCTCCATCGGAGGTGGTCGGCCTGAGGCTGGATGGTCCGATCTC
GAGATCCGCCATCTAGTTCCGGCAGCGAGTCAGGAAGACA--TAGTTGCCGGTGAAAACCGAGCCGATGGCAGGCGATGG
CAGCG-T-CTGCATCGTTACCTTGATGAAGGCATCGCCGTGTAACTACTGTCGACCCACTCGTGCTGCTCC-AGG-GGAA
ACCCTAAGATCTGGTCTTCCAGATCGGACGATGGCGGTACTGCGGTGTCGTTTTCTCTCTTGGGAGCATCGTTTGTGGAG
CAGAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGCTTCGTCTTGCACGGAGCTTTCGGTCGAGATGTCAAGTCATGCTT-
GCCGACAGGTGGTACGCTGTGTTATGCCT
>chr4B_2576
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-----------------------------------------------------------------------ATCGCTC-C
AGGGCTCCCTCG-ATCGCTCCCTCCAGGGCGATCTGGGGGCCAACCCCAGCGCCCCGGCCGCCGCCCCG-CCCCCCTCTC
CTCCACCTCGTTGTCCCCAGAGACATGCGCCGGCTAAGCCCGGGCACCGCCGGTGATGGGGACGGCGGCGGTCTAGGTTG
CAACCCCGCGGTCTGGAGGGACGGGTGGAGCGAGATTGCCCTTCGGTCTTCGTCTTTTCTGGCGGTTTGGCGCTGCTCCG
ACGGCTTCGTGGGGAGGGCGGA--TC--GGGAGGGGATGTGGCCATGGTTGAGTGGTCAGCGGCGCCTCCGGTCAGATCT
TATCTGGTCGGTGTCGC-AGGCGGTGGTGGCTATCTCCTCCGTCGGAGGTGGTCGGCAAGAGGCTGGATGGTCAGATCTC
GAGATCCGCCATCTAGTTCCGGCTGCGAGTCGGGAAGACA--TAGTTGTCGGTGAAAACCGAGCCGTTGGCTAGCGATGT
CGGTG-TTCTGCGTCGTTACCATGATGAAGCCATCATCGTGTAGCTACTGTTGACCCACTCGTGCTGCTCC--GG-GGAA
ACCCTAGGATCTGGTCTTCCAGATCGGACGATGGCGGTACTGCGGTGTTGTTTTTTCTCTA-GGAGCATCGTCTGTGGAG
CAGAGCTGAAAGACAGAGGCAGGAGGTGGAGCGGCTTCGTCTTGCACGAAGCTTTCAGTGGAGATGTCAAGCCATGCCTG
GCCGACAGGTGCTACGCTGTGTCATGCCT
>chr2A_2576
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-----------------------------------------------------------------------ATCGCTCCC
AGGGCTCCCTCCTATCACTCCCTCCAGGGCGATCAGGGGGCCAACCCAAGCGCA-CGGCCGCCGCCCCCTCCCCCCTCTC
CTCCACCTCGTCATCCCCAGAGACGTGCGCCGGCTAAGCCCGGGCGCCGCTGGTGATGGGGACGGCGGGGATCTAGGCTG
CAGCCCCGCGGTCTGGAGGGACCAGCGGCCCGAGATCGCCATTCGGTCTTTGTCTTTCCTGGCGGTTCAGCGCTGCTCCG
GCGGCTTCCTGGGGAGGGCGGA--TC--AGGAGGGGATGTGGCCATGGTTGACTGGTTGGCGGCGCCTCCGATCAGATAT
GATCCGGTCGGTGCCGC-TGGCGGTGGTGGCCATCTCCTCCGTCGAAGGTGGTTGGCCTAAGGCTGTATGGTCAGATCTC
GAGATCTGCCATCTAGTTCCGGCCGCAAGTCGGTAAGACA--TAGTTGCCGGTGAAAACTGAGCCGATGGGAGGTGATGG
TGGCGTT-CTGCGTCGTTATCTTGATGAAGGCATCATCGTGTAACTACTATCGACCCACTCGTGCCGCTCC--GGAGGAA
ACCCTAGGATCTGGTCTTCCAGATCAGACGACGACGGTACTGCGGTGTCGTTTTCTCTCTTGGGAGCATCGTTTGTGGAG
CAGAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGCTTCGTCTTGCACGAAGCTTTTCGTGGAGATGTCAAGTCATGCCTG
GCCGATAGGTGCTACGCTGTGTTATGCCT
>chr5D_2576
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-----------------------------------------------------------------------ATCGCTC-C
CAGGCTCCCGCGTATCGCTCCCTCCAGGGACATCAGGGGGCCAATCCCAACGCCCCGGCCGCGGCCCCT---CCCCTCTC
CTCCACCTCGCCGTTCCCAGAGACGTGCGTCGGCTAAGTTCGGGCGCCGCCAGTGATGGGGACGGCAGGGATCTAGGCTG
CAGCCTCGCGGTCTGGAGGGACCGGCGGCGCGAGACCGCCCTTCGGTCTTCGTCTTTACCGGTGGTTCGGCGCTACTCTG
GCGGCTTCGTGGGGAGGGCGGATCTC--AGGAGGGGATGTGGCCATGGTTGACTGGTCGGCGTCGCCTCCTGTCAGATCT
GATCTGTCCGATGCCGC-TGGCGATGGTGGCCATCTCCTTCGCCGGGGGTGGTCGGCCTGAGGCTGGATGGTCAGATCTC
GAGATCCGCCATCTAGTTTCGGCTGCGAGTCGAGAAGACA--TAGTTGCCGGTGAAAACCGAGCCGATGGCAGGCGATGG
CGGCATT-CTGCGTCGTTACCTTGATGAAGGCATCGCCGTGTAACTACTGTCGGCCCACTCGTGCTGCTCC--GGGGGAA
ACCCTAGGATCTGGTCTTCCAGATCGGACGATGGCGATACTGCGGTGTCGTTTTCTCTCTTGGGAGCAACGTCTGTGGAG
CAGAGCTGGAAGACAGAGGCAGGAGGTGGAGTGGCTTCGTCTTGCACGAAGCTTTCGGTGGAGATGTCAAGTCATGCCTG
GCCGACAGGTGCTATGCTGTGTCATGCCT
>chr6B_2576
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-----------------------------------------------------------------------ATCGCTC-C
AGGGCTCCCTCG-ATCGCTCCCTCCAGGGCGATCAAGGGGCCAACCCCAGCGCCCCGGCCGCTGCCCCCTCCCTCCTCTC
CTCCACCTCATCGTCTCCAGAGACGTGCACCGGCTAAGCCCGGGCACCGCCGGTGATGGGGACAACGGGGATCTAGGCTA
CAGCCCCGCAACCTAGAGGGACCGGCGGCGCGAGATCTCTCTTCGGTCTTCGACTTTCCCGACGGTTCGGCACTGCTCCG
GCGGCTTCGTGGGGAGGGCGGATCAGG-----AGGGATGTGGCCATGGTTAACTGGTCGGCGGCACCTCCGGCCAGACTT
AATCTGGCCGGTGCCGC-TGGCGGTGGTGGACATCTCCTCCGTCGGAAGTGGTCGGCCTGAGGCTGGATGGTCCGATCTC
GAGATCCTCCATCTAGTTCCGGCTGCGAGTCGGAAAGACA--TAGTTGTCGATGAAAACCGAGCCGATGGCAGGCGATAG
CGGTGTT-CCGCGTCGTTACCTTGATGAAGGCATCGTCGTGTAACTATTGTCGACCCAGTCGTGCTGCTCC--G-GGGAA
ACCCTAGAATCTGGTCTTCTAGATCAGACGATGGCGGTACTGCGGTGTCGTTTTCTCTCTGGGGAGCATCGTTTCTAGAG
CAGAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGCTTCGTCTTGCACGGAGCTTTCAGTGGAGATGTCAAGTCATGCTTG
GCCGACAGGTGCTACGCTGTGTCATGCCT
>chr2D_2578
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-------------------------------------------------------------------------CGCTCCC
AGGGCTCCCTCGTAACGCTCCCTCCAGGGCGATTAAGGGCCCAACCCCAGAGCCCCGGCCGCCTCCCCCTCCCTCCTTTT
CTCCACCTCGTTATCCCCAGAGACGTGCGCCGGCTAAGCCCGGGCCCCGCCGGTGATGGGGACGGCAGGGATCTAGGCTG
CAGCCCCGCGGTCTGGAGGGACCGGCAGCGCGAGATCGCCCTTCGGTCTTCGTCTTTCCCGGCGGATCGGCGCTGCACCG
GCGGCTTCGTGGGGAGGGCGGA--TC--AAGAGAGGATGTGGCCATGGTTGACTGGTCGTCGGCGCCTCCGGTCAGATCT
GATCTGGCCGGTGCCGC-TGGCGGTGGTGGCCATCTCCTTCGTCGGAGGTGGTCGGCCTGAGGCTGGATGGTCAGATCTC
GAGATCCGCCATCTAGTTCCTGGTGCGAGTCGGGAAGACATATAGTTGCCGGTGAAAACCGAGCTGATGGCAGGTGATGG
CGGCATT-CTGCGTCGTTACCTTGATGAAGGCATCGTCGTGTAACTACTGTCGACCCACTCGTGCTGCTCC--GGGGGAA
ACCCTAGGATCTGGTATTCCAGATCGGACAATGGCGGTACTGCGGTGTCATTTTCTCTCTTGGGTGCATTGTTTGTGGAG
CAGAGCTGGAAGACAGAGGCAGGAGGTGGAGCGGTTTCGTCTTGCATGGAGCTTTCGGTGGAGATGTCAAGTCATGTCTG
GCCTACAGGTGCTACGTTGTGTCATACCT
>chr7D_2582
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-----------------------------------------------------------------------------C-C
AGGGCTCCCTCGTATCGCTCCCTCCAGGGCGATCAGGGGGCCAACCCCAGCGCCCCGGCCGCCGCCCCCTCCCCCCTCTC
CTCCACCTCGCCGTCCCCATAGACGTGCGCCGGCTAAGCTCGGGCGCCGCCGGTGATGGGGACGACGGGGATCTAGGTTG
CGGCCCCGCGGTCTGGAGGGACTGGCAGCGCGAGATCGCCCTTCGGTCTTCGTCTTTCCCAGCGGTTCGACGCTGCTCCG
GCGGCTTCGTGGGAAGGGCGGATCTC--AGGAGGGGATGTGGCCATGGTTGACTGATCGGCGGCGCCTCCGGTCAGATCT
GATCTGGCCGGTGCCGC-TGGCGGTGGTGGCCATCTCCTCCGCCGGGGGTGGTCGGCCTGAGGTTGGATGGTCAGATCTC
GAGATCCGCCATATAGTTCCAGCTGCGAGTCGGGAAGACA--TAGTTGCCGGTGAAAACCGAGCCGATGGCAGGCGACGG
TGGCGTT-CTGCGTCGTTACCCTGATGAAGGCATCGTCATGTAACTACTGTCGACCCACTCGTGCTGCTCC--GAGGGAA
ACCCTAGGATCTGGTCTTCTAGATCGGATGATGGCGGTACTGCAGTGTCGTTTTCTCTCTTGGGAGCATCGTTTGTGGAG
CAGAG-TGGAAGACAAAGGCAGGAGGTGGAGCGG-TTCGTCTTGTACGGAGCTTTCGGTGGAGATGTCAAGTCATGTCTG
GCCGACAGGTGCTACGCTGTGTCATGCCT
>SNPs
SSSSSSSSSSSSSSSSSSSS------S-------------S---S--S-----------SSS-------S--SSS-SSSS
---SSS-SSS---S-S-S-SS-SSSSSSSSSS----S--S--------------S---SS--------S-----------
-S---------------------------------------------------------S--------------------
S-------------------------S------S--------S--S------------S-----------SSS-SSSSSS
SSSSSSSSSSSSSSSS--------------S-SS-------------S--------S---------S-------------
-------------------------------S------------------------------------------------
S----------------------S--------------------S----------------------S------------
---------------S----------------------------------------------------------S-----
---------------------------SSSSSSSS---------------------------------------------
S----------S----------------S------S--S-------------------------------------S---
-------SS---------------------------------------------------S-------------------
--------S----S------------------------S-------------S---------------------------
------------------------SSSSSSSSSSSS---------------S-S-S---S---------------SSSSS
SSSSSS--------------------------------------------------------------------------
--------------------S--------------------S--------SS--------------S-S-----------
--SSSSSSSSSSSSSSSS---------------------------------------------SSSSSSS----------
----S-S-----------S--S-------S-----------------------------------S--------------
-------------------------------------------------SS---------------------------S-
-S------------------------------------S-----------------------------------------
----------------------------------------S----------------S------S---------------
------------------------------------------------------S--------------S---------S
SS----------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
----------------SS---------------S-----S----------------S------------------S----
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--S---------S----------S-------------S--SSSS----S-------------------------------
----------SS----S-------S----------------------------S----------S-SSSS----------
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---------------------S----------S----------------------------------S------------
-S------------------------------------------------------------------------------
------S-SSSSSSS--S--S-------------------S-----SS---S---------S-------S----------
------------------------------S----------------------------------------------S--
------S-------------------------------------------------------------------------
------------SS-SSSSSS-SSS-----------------S------------------S------------------
-------------------SS-----SSS------------S---------------SS--SS-----------------
S----S---S------------------------S---S------SS---S-----S-------SSSSSSS---------
-----------S--------S--------------------------------------S------S-------------
-----------------S--------------S---------------S-------------S------S----------
-------S----S-------S------S----------------------------------------------------
-------S--S---------------------------------------------------------------------
-------------------------------------------------------S--S-------S-------------
---------------S--------------------------------S-------------S-----------------
--S-----------------------------------------------------------------------------
---------------------------------------S----------------------S-----------------
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>forward_1041
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-------------------------------------------------------------CGTTTTCGTTGTGGCCTTG
T-------------------------------------------------------------------------------
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>reverse_3030
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---------------------------------------------------------------------AATCTAGGTTG
CAGCCCCAC-----------------------------------------------------------------------
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