>input_sequence_54710
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------------------------------------------GCTCGCCTGCTCCGCGGCCTCCAACAGCCCAC------
---------GCCCATGCCGCCGCCGCCCGAGGACCATCCCCTGCCGC------------GGCCAAAGCCGAAGCCTCCCA
AGCCCAGGCCCAGGCCGGAGAGGATGAAGCCGAAGCCGGAGCCGGTGCGCGACCAGCCCGACGCCGTCTTCCCGTTCCCT
GCCGACACCTTGGCCTGCGCCGCGCACTGCTCAGAGCCGTGCGCCCACTACGGCCTCTGCCGGCCGCCGCCGCCCTCGCG
CACCGCCACCGTGCACCTCCGGCCCTCCTCCCGCCTCCCCACCCCGCTCGTCGCTGTATCAGCGTCCGTCCTCGCCGTGT
CCGTGGTGCTCCTCCTCGTCCTGCTCGTCTGCCACGTCGTGCGCCGGCGCCGGCGCCAGCGCGCCAACGCTGCGCCGCTG
CCGCTGCCGCTGCACCACCAGGCCGCCGAGGGGGGGCCTCCGGCCGACGTGGCGGTCCCGGTGCCGGCGGACAGCGACTC
CGACGACGGGGTGCACCACGTGTGGTACATACGCACCGTGGGGCTCGACGAGCGCGCCATCGCGGCCATCACCGCGCTGG
TGTACGACCCCGACAAGTGCCGCGCCCTGGGACTCGGCGGCGACGGCTGCGCGGTGTGCCTCGCGGAGTTCCGCGGCGGC
GAGACGCTGCGCCTGCTGCCGCGCTGCGCCCACGCGTTCCACCGCGGCTGCATCGACACCTGGCTCCGCGCCCATGTCAA
CTGCCCGCTCTGCCGCGCTCCTGTCAGGGTCGCCGCCGGCGCGCACCAGACCGCCGCACCCGGTAGCAACGTGAGCGAGC
CCGCGGCAAACCTAGCCGCGGCCGCTGGTGCTGGCGCCGAGGAGGCCGGGGGCGACGGCGTCCTGTCGACGGAGATGGCT
GTGAGGCGCACCGCGTCCATGATGGCGCTCCCGAGGCTGCCGTGGCCGGACGTCTCCCTACGACCGCTGGCGTCGAACAG
TGCGCGCGAGGGGGAGATGATGGGCCTAGCGAAGATCAGTAGAGCGCTGAAATCGTGCGAAGCATTGGAGATGGCCGGCG
TCGCGGTAGGCAGGTCCGCGTCGTTCGGCGCGGCGCCGCCGCGTTTGCCGGGGCGGTCAGGCCAGCCGGCCACCGGCGTC
AACGCCGATGAGATCCAACGTTGAACTGCGATCGATGCTGCTGCTT-------GGGTGGAAGTTTTTGGAGTGAACAGCT
TGAGCTTGTGCATACACCGTGAGAATGTCAGAAATTGTAAATAAGAATTGCTGACGCAAAAGATGTGCTCTCGATCTTGT
ATGCAAG---AATCTAATAAGCTATGAAGATCTTA---------------------------------------------
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>chr6A_1_TraesCS6A01G050800
TTTGGTGATGTGTGTTAAGTGAGAGGAAATATTTTCGTTTACTACATGCACATGGCGACTTTATCAATCTTAAGATAATG
TGCTAGCTCAGTCTCTAGAAGATGCTCATAAAGATAGCATGTGCATATGTTTTCTTATTCATCGGGCGGTTGAAATCACC
CTTTACTGCAGGCCATCGACCCCGTACAACGTGTGAAATAGCGACCGATGGTCGATCAGTGACGTGTACGTACTACGAAA
GGGAAGAAAATACTCTCTCCGATCCTTTTTAGTTCGCATATAAGATTTGACTAAAGGCAAGTCTCGTAAAGTTTGACCAA
CTTTATAGAAAAAAATGTCAACATTCACAATCTAAAATTAATACTACTAGATGTGTCATGACTTAAAGTTTCATATTATA
TAACTTTAGCATGGCAGATATTGATATATTTTCATATAAATACGGTCAAACTTTGTGAAAAGGACCGGAGGAAGTACTAC
TATTCGAAATGTTTTTCTTGTGATAGGTGGATAGTGGTATCCCCAACCCACCAGGGTTCAAATCCTGGTGCTCGCATTAT
TCCTGGATTTATTTCAGGATTTCCGGCGATGCGCTTTCAGTGGGAGGAGACGTTCCCGTCGACGACGAAGCGCCTACGGT
GACTTCGTAAATCTCAAGATGATATGCCGGCGCAGTCTCTCGGAGATGCTCATAGGGATAGGGTGTGCGTGTGTGCGTTC
ATAGGGGTGAGTGTATACGCGTGTATATGAGCGCTTGTGTCTGTACTGATGCTTAGAAAAAAAAATGTTTTTCTTGTGGC
CAACGAATCTCCAGAAAATCAATCGAGATGTA-ACACCGCGCCTGCTTTTTACCGGCCGCTCACCCTTCCACGAGAAGCT
CCGGGGAGTACACACAGACCATAGGATTTGCTCCGAG-AAGTCTCCGGCCGCAGCTTCAACCACACACCGCGGCCCGCAG
TTCACACGCATTAAAAAGGCAGCCGGAGTCGCAACCACCACCGCTCGCCTGCTCCGCGGCCTCCAACAGCCCAC------
---------GCCCATGCCGCCGCCGCCCGAGGACCATCCCCTGCCGC------------GGCCAAAGCCGAAGCCTCCCA
AGCCCAGGCCCAGGCCGGAGAGGATGAAGCCGAAGCCGGAGCCGGTGCGCGACCAGCCCGACGCCGTCTTCCCGTTCCCT
GCCGACACCTTGGCCTGCGCCGCGCACTGCTCAGAGCCGTGCGCCCACTACGGCCTCTGCCGGCCGCCGCCGCCCTCGCG
CACCGCCACCGTGCACCTCCGGCCCTCCTCCCGCCTCCCCACCCCGCTCGTCGCTGTATCAGCGTCCGTCCTCGCCGTGT
CCGTGGTGCTCCTCCTCGTCCTGCTCGTCTGCCACGTCGTGCGCCGGCGCCGGCGCCAGCGCGCCAACGCTGCGCCGCTG
CCGCTGCCGCTGCACCACCAGGCCGCCGAGGGGGGGCCTCCGGCCGACGTGGCGGTCCCGGTGCCGGCGGACAGCGACTC
CGACGACGGGGTGCACCACGTGTGGTACATACGCACCGTGGGGCTCGACGAGCGCGCCATCGCGGCCATCACCGCGCTGG
TGTACGACCCCGACAAGTGCCGCGCCCTGGGACTCGGCGGCGACGGCTGCGCGGTGTGCCTCGCGGAGTTCCGCGGCGGC
GAGACGCTGCGCCTGCTGCCGCGCTGCGCCCACGCGTTCCACCGCGGCTGCATCGACACCTGGCTCCGCGCCCATGTCAA
CTGCCCGCTCTGCCGCGCTCCTGTCAGGGTCGCCGCCGGCGCGCACCAGACCGCCGCACCCGGTAGCAACGTGAGCGAGC
CCGCGGCAAACCTAGCCGCGGCCGCTGGTGCTGGCGCCGAGGAGGCCGGGGGCGACGGCGTCCTGTCGACGGAGATGGCT
GTGAGGCGCACCGCGTCCATGATGGCGCTCCCGAGGCTGCCGTGGCCGGACGTCTCCCTACGACCGCTGGCGTCGAACAG
TGCGCGCGAGGGGGAGATGATGGGCCTAGCGAAGATCAGTAGAGCGCTGAAATCGTGCGAAGCATTGGAGATGGCCGGCG
TCGCGGTAGGCAGGTCCGCGTCGTTCGGCGCGGCGCCGCCGCGTTTGCCGGGGCGGTCAGGCCAGCCGGCCACCGGCGTC
AACGCCGATGAGATCCAACGTTGAACTGCGATCGATGCTGCTGCTT-------GGGTGGAAGTTTTTGGAGTGAACAGCT
TGAGCTTGTGCATACACCGTGAGAATGTCAGAAATTGTAAATAAGAATTGCTGACGCAAAAGATGTGCTCTCGATCTTGT
ATGCAAG---AATCTAATAAGCTATGAAGATCTTAGATATATGAGCATCATATAAGCGCATGTTCATCTTTCGTTC---A
TACATGTGCTTTAAAAAGTATGTGTTGTTACAAAAAAA-------ATGCTTATCGATTTCAAGTTTCATTTGATGTTCCA
TGC--CACGTATATTCAATTGTTTGGGCAATTGCTTGAATTAAGTCTTAGTCGATGCTATATTGATCGGATCCTATATGG
AGATCCATGCTATTTATTTTTTTGTTTTTTTACATGTTATATGTTTTTTGACTTAAACTTTGTTAAGTCTTATTAGTCGA
TTAAGACCTAACCATAACTATTTTGTATACTAGATAGTTTTGGGGGTTTGCGGGAATTAACAAGTTTTGATTCAGTTGCG
ATTCACCGTTTTGGACGTCTGATGATCATCAAGTTGATAAAGTTTCAGGTCCCAAGCTAGTAAAGTAAGCGTGCAGCTTT
CGATCCATTTCAACCCAGTTAAAGCGTGGGGATGGTGATGTGGAATTTATCCTGTTCCAATCTGAAATGAGCTGGATCCC
ATT----TCCAATCCTCTGCGCCCAAAAGAACGCATTATCTTAGATTCATAAAAAAAATACTCCCTCCGTTCTTAAATAT
AAGTCATTTTTAAGATTTTATTATAAACTATATAGAAAGTAAAATGAGTGAATCTATATTTTAAAATATGTCTATATATT
TGTATGTAGTTTGTAATGAAATATCTAAAAAGATTTAGATTTAGGAAAGGAGAGAGTACAATAGAGACTTGCCTGCCTGA
ATCAGAATTCTCAAGGAAGTTCCAGCGAGCGACTGGCCACCCACCTTGCCTTTTTGTCACCATCGCCC--TACCAAGACT
GCATTAAAAATGATGCCTCCATTGGCACTGCCAAAGCAGGC----GGCGAGGTGGGCAGTCAATCCCAGTCACCTCATCA
AAATGCAGATGTGCATCATTTATTTGCACCAAGAAACTGCTGCTGTTCATTAAATGAGATGGGTGAGCGTCAGGCGTGAG
AGTCC---GAGAGATGGAGT
>chr6B_783
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--------------------------------------------------------------AAATGTTTTCCTTGTGAC
CAGCGAATCTCCAGAAAATCAATCGAGATGTAAACACCGCGCCTGCTTTTTACTGGGCGGTCACCCTTCCACAAGAAGCT
CCGGGC--------ACTTGCTACTTGTCGCGCGCGCTCAAGTCTCCGGCTGCAGCTTCGACCACACACCGCGGCCCGCAG
TTCACACGCATTAAAAAGGCAACCGGAGTCGCACCCACCACCGCTCACCTGCTCCGCGGCCTCCAACAGCCCACGCCCTC
CCGCCGGCTGCCCATGCCGCCGCCGCCTGAGGACCATCCCCTGCCGCCGCCTCGGCCGCGGCCAAAGCCAAAGCCTCCCA
AGCCCAAGCCCAAGCCGGGGAGGAT------GAAGCCGGAGCCGGTGCGCGACCAGACGGACGCCGTCTTCCCGTTCCCT
GCCGACCCCTTGGCCTGCGCCGCGCACTGCTCGGAGCCGTGCGCCCACTACGGCCTCTGCCGGCCGCCGCCGCCCTCGCG
CACCGCCACCGTGCACCTCCGCTCCTCCTCTCGCCTCCCCACCCCGCTCATCGCCCTATCGGCGTCCGTCCTCGCCGTGT
CCGTCGTCCTCCTCCTCGTCCTGCTCGTCTGCCACGTCGTGCGCCGGCGCCGGCGCCATGCCGCCAACGCCGCGCCGCTG
CCGCTGC------ACCACCAGCTCGCCCAAGGCGGGCCTCCGGCCGACATGGCGGTCCCGGTGCCGGCGGACAGCGACTC
CGACGACGGGGTGCACCACGTGTGGTACATACGCACCGTGGGACTCGACGAGCGCGCCATCGCGGCCATCACCGCGCTGG
TGTACGACCCCGACAAGTGCCGCGCCCTGGGGCTCGGCGGCGACGGCTGCGCGGTGTGCCTCGCGGAGTTCCGCGGCGGG
GAGACGCTGCGCCTGCTGCCGCGGTGCGGCCACGCGTTCCACCGCGGCTGCATCGACACCTGGCTCCGCGCCCATGTCAA
CTGCCCGCTCTGCCGCGCTCCTGTCAAGGTCGCCGCTGGCGCTCACCAGACCGCCGCCCCCGGCAACGACGCGAGCGACC
CCGCGGCGAACCTAGCCGCTGCCGCTGGTGCTGGCGCCGAGGAGACCGGGGGCGACGGCGTCCTGTCGACGGAGATGGCT
GTGAGGCGCGCCGCGTCCGTGATGGCGCTCCCGAGGCTGCCGTGGCCGGACGTCTCCCCACGACCTCTGGCTTCGAACAG
TGCGCGCGAGGGGGA---GATGGGCCTATCGAAGATCAGTAGAGCGCTGAAATCGTGGGAAGCGTTGGAGATAGCCGGCG
TCGAGGTAGGCAGGTCGGCTTCGTTCGGCGCGGCGCCGCCGCGTTTGCCTGGGCGGTCAGGCCAGCCGGCCACGGGCATC
AACGCCGACGAAATCCCGCGTTGAACTGCGATCGATGCTGCTGCTGCTGCTTGGGATGGAAGTTTTTGGAGTGAACAGCG
TGAGCTTGTGCATACACCGTGAGAATGTCAGAAATTGTAAATAAGAATTACTGACGCAAAAGATGTGCTCCCTAGCTTGT
AGTATGTGATAATCTAATAAGCTATGAACATCTCAGTAGATATGAACATC-ATAAGCGCATGTTCATCTTCTGGTTCATA
TACACGAGCTTA--AACATATGTATCTTGATACCAAAAAAAATC---GCTCATCGATTTCAGGTTTCTTTCAATCATCCA
TGATACACATATATTCAAATTTTTGGCCAATTTACGATCCATTTCAAT--------------------------------
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-------TTTCAACCAAGTTGAGGCGTGGGGATGGTGATGTGGAATTGATCCCATTCCAATCTGAAATGAACTGGATCCC
ATTCCAATCCAATCCTCTGCGCTCAAAAGAGCGCATCGACTTAGATTCAGAAA---------------------------
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--------------------------------------------------AGAAAGCACAATAGAGACTTGCCTGCCTGA
ATCAGAATTCTCAAGGAAGTTGCAGCGAGCGACAGGCCACCCACCTTGCCTTTT-GTCACCATCGCGCTA--CCAAGACC
GCATTAAAAATGATGCCTCCATTTGCACTGCTAAAGCAGGAGGCGGGCGAGGTGGGCAGTCAATCCCGGTCACCTCATCA
AAATGCAGATGTGCATCATTTATTTGTCCCAAGAAGCTGCTGCTGTTCATTAAATGAGACGGGTGAGCGTCAGGTGCGAG
AGTCTGATGAGACATGGAGT
>chrUn_786
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-----------------------------------------------------------------TGTTTTTCTTGTGAC
CAACGAATCTCGAGAAAATCAATCGAGATGTA-ACACCGCGCCTGCTTTTTACCGGCCGGTCACCCTTCCACAACAAGCT
CCGCGGACCACAGGACTTGCTACTTGTCGCGCGCGCTCAAGTCTCCGGCTGCAGCTTCAACCACACACCGCGGTCCTCAG
TTCACACGCATTAAAAAGGCAACCGGAGTCGCACCCACCACCGCTCACCTGCTCTGCGGCCTCCAGCAGCCCACGCCCTC
CCGCCGGCTGCCCATGCCGCCGCCGCCTGAGGACCATCCCATGCCGCGGCCGAA------GCCGAAGCCGAAGCCTCCCA
AGCCCAGGCCCAGGCCGGAGACGAT------GAAGCCGGAGCCGGTGCGCGACCAGACCGACGGCGTCCTCCCGTTCCCT
GCCGACCCCTTGGCCTGCGCCGCCCACTGCTCGGAGACGTGCGCCCACTACGGCCTCTGCCGGCCGCCGCCGCCCTCGCG
CACCGCCACCGTGCACCTCCGGCCCTCCTCTCGCCTCCCCACCCCGCTCATCGCCCTGTCGGCGTCCGTCCTCGCCGTGT
CCGTGCTCCTCCTCCTCGTCCTGCTCGTCTGCCACGTCGTCCGCCGGCGCGGGCGCCAGGCCGCCAACGCCGCGCCGCTG
C------------ACCACCAGGTCGCCCAAGCGGGGCTTCCGGCCGACATGGCGATCCCGGTGCCGGCGGACAGCGACTC
CGACGACGGGGTGCACCACGTGTGGTACATACGCACCGTGGGGCTCGACGAGCGCGCCATCGCGGCCATCACCGCGCTGG
TGTACGACCCCGACAAGTGCCGCGCCCTGGGGCTCGGCGGCGACGGCTGCGCGGTGTGCCTCGCGGAGTTCCGCGGCGGG
GAGACGCTGCGCCTGCTGCCGCGGTGCGCCCACGCGTTCCACCGCGGCTGCATCGACACCTGGCTCCGCGCCCATGTCAA
CTGCCCGCTCTGCCGCGCTCCTGTCAAGGTCGCCGCTGGCGCTCACCAGACCGCCGCCCCCGGTAACGACGCGAGCGAGC
CCGCGGCGAACCTAGCCGCGGCCGCTGGTGCAGGCGCCGAGGAGACCGGGGGCGATGGCGTCCTGTCCACGGAGATGGCT
GTGAGGCGCGCCGCGTCCATGGTGGCGCTCCCGAGGCTGCCGTGGCCGGACGTCTCCCTACGGCCGCTGGCGTCGAACAG
TGCGCGCGAGGGGGA---GATGGGCCTAGCGAAGATCAGTAGAGCGCTGAAATCGTGCGAAGCGTTGGAGATGGCCGGCG
TCGCGGTAGGCAGGTCGGCGTCGTTTGGCGCCGTGCCGCCACGTTTGCCGTGGCGGTCAGGCCAGCCGGCCACAGGCATC
AACGCCGATGAGATCCAACGTTGAACTGCGATCGATGCTGCTGCTG-------GGGCGAAAGTTTTTGGAGGGAACAGCG
TGAGCTTGTGCGTACACCGTGAGAATGTCAGAAATTGTAAATAAGAATTACTGACGCAAAAGATGTGCTCC----CTTGT
AGTATGTGATAATCTAATAAGCTATGAACATCTTAGTAGATATGAACATC-ATAAGCGCATGTTCATCTTCTGGTTCATA
TACATGAGCTTACAAAAATATGTATGTTGATACAAAAAAAAAAGTATGCTCATCGATTTCAAGTTTCTTTTAATCTTCCA
TGAT--ACATATATTCAAGTTTTTGGCCAATTTTCGATCCATTTCA----------------------------------
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------------ACCAAGTTGAATCGTGGGGATGGTGATGTGGAATTTATCCTGTTCCAATCTGAAATGAACTGGATCCC
ATTCCAATCCAATCCTCCGCGCTCAAAAGAACGCATCAACTTAGATTCAGAAA---------------------------
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--------------------------------------------------AGAAAGCACAATAGAGACTTGCCTGCCTAA
ATCAGAATTCTCGAGCAAGTTCCAGCGCGCGACTGGCCACCCACCTTGCCTTTT-GTCACCATCGTGCTATACCAAGACC
GCATTAAAAATGATGCCTCCATTTGCACTGCTTAAGCAGGATGCCA--GAGGTGGGCAATCAGTCCCAGTCACCTCATCA
AAATGCAGATGTGCATCATTTATTTGGACCAAGAAACTGCTGCTGTTCATTAAATGAGATGGGTGAGCGTCAGGTCTGAG
AGTC----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-
-----------------------------------------------------------S------------S-------
-------SS---SSSSSSS-SSSSSS-SSSSSS--SS------------S------------------------------
---------------------S-----------S------------S---------------------------------
---------------------------S----------------------------------------------------
-------------------------SSSSSS-------------------------S-----------------------
------S-------------------------S-----------------------------------------------
------------------------------S------------------S----SS----S-------------------
-------S---------------------------------------------------SS---------S---------
-------SSSSSS---------S----S-S------------------S-------------------------------
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-------------------------------S-----------------------------------------------S
-----------------------S--------------------------------------------------------
--------------------------S---------S-----S--------------S-------S-S---S--------
-------S------------------------------------S-----------------------------------
---------S----------------------------------------------------------------------
---------------SSS---------------------------------------------S----------------
----------------S--------------------------------------------------------S---S--
---------------------------------------------S---------------------------------S
-------------------------------------------------S--------------------S-S-S-----
-SSSSSS---------------------S-------SSSSSSSSSSSSSSS-------------------SS-S-S----
------S----SS----S-----S-SS-S-S-S-----------------S----------------S---S--S-----
--S-----S---------S-S-----S-----SSSSSSSSSSSSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS--------S----S-------------------------------------------------S---------
----------------------S-------------S-S----------S---SSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S--S-----------------------
------------------------------------------------------S-----------S------------S
-----------------------S-------S--------S---------------------------------------
--------------------------S-----------------------------------------------S-----
----S-------S-------
>forward_691
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-------------------------------GCAGTCTCTCGGAGATGCTC-----------------------------
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>reverse_2680
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---------------------------------------TTGGGGGTTTGCGGGAATTA---------------------
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