>input_sequence_54661
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATGGCGTGCAAGCGGGCCACC
TCGCGGGTTCTCCGGGCGATGTATGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCACGGCGTGGTCGT
CGACGGCGACGATGAGGACGACGACACCGCCACCGCCCTCCCCCAGCTCTCCTTCGTCGATAACTTCAAAGGCGGGTGCG
GGTCG---GCAGCGGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGTGGGACGCCGGGCGCCTCCTCCAGCTCCACC
TCTTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAACGCCGGCACAGGCGACGATGACTG
CGCGCTCTGGATGGACGGCATGGCCGACCATCAGCATGGCGCTGCCAA---GTTTGGGTTCATGAACCCAGGGTCGGCCG
ATGTCGTCCCGGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCGCGAGCTCGGTAAATACC
TACATCAGATCTTTCCCGTACATTCAT--ATGAGAATATGTTGTTACCTACGCAAACTTTGCATCAGATCTATTTAAGTG
----AATAATCTGATCTGTGTTTATCTGTG----AAGGGCGGTGAGGCGCAAGCGGCGGCGAAGAAGCAGTGTGGAGGAG
GCAGGAAGAGCAAGGCCAAAGTTGTGCCTACCAAGGACCCTCAGAGCGCCGTTGCAAAGGTACATACAAG--CAGCATGA
GTTCAACTTCTCCCTATTCTTGTGGTG-AATGATTCTTTGCGTGGCGAGGAAATTGCTTCGATCGAAACCAAACTAATCC
AAGTTACTCCATCGATCATCCCTGTGTAGGTCCGAAGAGAGCGCATCAGCGAGAGGCTCAAAGTTCTGCAGGATCTGGTG
CCCAACGGCACGAAGGTGCGCACCATGATTCCTCCTCATGCACACCATGCATGCTTTAGCACAGCTTTTTTCTGTCAAAA
TGTTC------TGGTCATCAGTTGCTAATTTTGTGGATGAAACCAACTCGTGTAGGTGGACATGGTCACCATGCTCGAGA
AGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTATGCGATCGATCAGTCATCGTTACATCGACTACTTGT
TCTTCAACCCTTGG----ATGATCGATCTACAGTCCGATGATGTCTGATCTGCAATGTATAACTTGGTCCACGCATAATC
GGCATCTATATATGCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCCCCGGAGCTCTCCCAAGTG
AAGACCGCCCTGGACGCCATCCTGTCCTCTCAGCAGCAACCCTAG-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr3D_1_TraesCS3D01G004300
ATACAATTCTACATTGGTACCAGCTGGTTTTGTTAAGCCTGCGGCGAATTGCTGCGTGCAACTGCTGGTGATCTGCATTA
GTCGCTGATAAAGCTAAAGTTTCTGTCGATGCAAAAATC--AGATTGCGGTGAAAACAAGAACTTATAATTCCCTGCGAT
TT----GAAGTAGTAGGGGGATAGTTTCTTGTTTTCACTGTAACCATTATTGGTGCTGTGCTAGCAGTAGCAGGTACCTA
AACCCTGACCAATATATGTGAACCTACATA-----TAGAAGAAACATGTACTCTCGTACGACGTACGGCCGATCAATTAT
ATATATACCAAGGAAATAATTGAAGTTACATACCCTACAAGAACCTACACATATTTTTGCTTGGCTGCCTTACACATGGG
CTAGCTATAGCTT----------AGCTAGCCATGGCAATGGAGG------------------------------------
-----------------------TTCCCCAGCAAGCTTGTTTCATGCATG----CTAAGCCTGAATTGAATTGAATACAA
GCTTGTCACAACGTCATCACCACCTAGCTCCTCCCCTTGTTTAAACTTAACTAATGTAAACAGCATCAACTTGGCCTTGA
ATGCCACGTGAAGAGAGAGCCCGGGTGCGAAGGAGTGTAGATTATGTGGCACTGGAACATGGGGGGAGGGG-----GTTA
GCTCCACTTCTAC---------TACTACTTAATCACCTTACTTAGCTGAGCATAACAAGGGAATTAATCATGGGTCCACT
GCTGTCTGTCTCCCTCTTAGCACTTGACCCC-ATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGCTCTGCAC
ACTAGCGCCTACTCGATTAAGAAACCCCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTGACAGAGCT
CAGCTAGCTAGCTACCTGCCAAGAGCTGCCCTGAACCCTAGCTAGTAGTAGCTCCCCGGAACACCGTCACCAGTAGCTCG
GTCTCACCTAGGTAGCTAGGGAACAGTGACACAGAGCAGCTAGCTGCCTAGCCTGGCCAATGGCGTGCAAGCGGGCCACC
TCGCGGGTTCTCCGGGCGATGTATGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCACGGCGTGGTCGT
CGACGGCGACGATGAGGACGACGACACCGCCACCGCCCTCCCCCAGCTCTCCTTCGTCGATAACTTCAAAGGCGGGTGCG
GGTCG---GCAGCGGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGTGGGACGCCGGGCGCCTCCTCCAGCTCCACC
TCTTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAACGCCGGCACAGGCGACGATGACTG
CGCGCTCTGGATGGACGGCATGGCCGACCATCAGCATGGCGCTGCCAA---GTTTGGGTTCATGAACCCAGGGTCGGCCG
ATGTCGTCCCGGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCGCGAGCTCGGTAAATACC
TACATCAGATCTTTCCCGTACATTCAT--ATGAGAATATGTTGTTACCTACGCAAACTTTGCATCAGATCTATTTAAGTG
----AATAATCTGATCTGTGTTTATCTGTG----AAGGGCGGTGAGGCGCAAGCGGCGGCGAAGAAGCAGTGTGGAGGAG
GCAGGAAGAGCAAGGCCAAAGTTGTGCCTACCAAGGACCCTCAGAGCGCCGTTGCAAAGGTACATACAAG--CAGCATGA
GTTCAACTTCTCCCTATTCTTGTGGTG-AATGATTCTTTGCGTGGCGAGGAAATTGCTTCGATCGAAACCAAACTAATCC
AAGTTACTCCATCGATCATCCCTGTGTAGGTCCGAAGAGAGCGCATCAGCGAGAGGCTCAAAGTTCTGCAGGATCTGGTG
CCCAACGGCACGAAGGTGCGCACCATGATTCCTCCTCATGCACACCATGCATGCTTTAGCACAGCTTTTTTCTGTCAAAA
TGTTC------TGGTCATCAGTTGCTAATTTTGTGGATGAAACCAACTCGTGTAGGTGGACATGGTCACCATGCTCGAGA
AGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTATGCGATCGATCAGTCATCGTTACATCGACTACTTGT
TCTTCAACCCTTGG----ATGATCGATCTACAGTCCGATGATGTCTGATCTGCAATGTATAACTTGGTCCACGCATAATC
GGCATCTATATATGCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCCCCGGAGCTCTCCCAAGTG
AAGACCGCCCTGGACGCCATCCTGTCCTCTCAGCAGCAACCCTAGGCAATTT---CATCCATCCATGTTGAATTTT-AT-
CAAAGTTTTAGATTGATCGCGC---CGCGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCAGCTCTGTAAACATTCATA
CATGGCAGTCATGATGGATGATCATGTTTTT-GTTTCACTCCTTTTATAAGTAGAAGATCAAATCCCCTTGATCCGTGTA
TTGGAGTC---TGAAGCTCTGATCACTGTAACTAGTCCAATAAAATCCTTGACGTAGACGAGCATGATGTTTCACAGCTT
GGTGAAACCTAGACAGGGTCCCGCCACAGGGTGCAAGTACAATAAA---ATTGTTTCTGTTGAAACACAAAATCCTGAAA
AACAAATGAACTTTTTCTGAAAATAAACTTACTATTTCTTCTTTAGTCCCATAGAATTCTACTCTGTCCGATCTGTATTA
CTTGTCGTACCTTTAGTACAGCGACAAGTAATATGGATCGGAGGAAATAGAAGACTGAACTATATGGATTTGGATCAAAG
GGTAGTACTCCCTCCATCCCAAAATAAGTGACTCAAGTTTGTACTAACTTTGTACTAATTAAATGAATTGTACCCAGAGG
CTTATTGGGTGCAAACCAATCTTTATATTAGTGAAGGAAAATCCTAAGGATCCAAATTCTCTAGAATTCCTATGAGGCTG
CTTCCAATCAAAGGAGCACTCAATCTTGAATCGGCAACTGAGATCAAAGCACTTGGAATTGATCTTGTCAAGGGAGTAGC
AATGCATGCATGCATGATCGTGCAACCCTTACTAGTATTATGTTTCCTCTTAAACTTTCAACCGGGTCTAGATCGAGATT
GGCAAATATTTCTCAGGGATCTTAATTAACTGGAGACAAAGTAAATCACCACAAAATTTATATGGAGAGGAGAATGTACT
ATGTGTTCTGGGCACCACAGATTTTCTGCCACGAATATTGATAGCGCAGCATCGTCATCGATCAGAGATCGTGCGGCTAC
TTGTGTTTTTTCTCAAGTCA
>chr3B_1
ATACAATTCTACATTGGTACC---TGGTTTCGTTAAGTCTGCGGCGAATTGCTGCGTGCAACTGTTGGTGATCTGCATTA
GTCGCTAATGAAGGTAAAGTTCATGTCAA----------ATATATTACAGTGAACACAAGAAACTAGAATTTGCTTCCAT
TAATTGGAAGTAGTAGGA-GATAGTTTCTTGTTTTTGACATAACTG------------TGC------TAGCAGGTGCCT-
AAACCTGACCAATATTTTGTAACCTAATAAATATTTAGAAGAAATATGTACTCTTGTACGGCGTACGGCTGATCA-----
--ATATACCAGGGAAATAATTGAAGTTACCCAATAT--AAGAACCTACACATATTTTTGCTTGGCTACCTTACACATGGG
C------TAGCTA----------CCTTACACATGGCAATGGAGGTTGAGAGGGAGGCTGCATTTATGGGAGCATGACATC
CCAGCTAATTATTTGCATTGCAGTTCCCCAGCAAGCTTGTTTCATGCATGCATGCTAAGCCTGAACTGAATTGAATACAA
GCTTGTCACAACGTCATCACCACCTAGCTCCCCTCCCCCTTGT---TTAACTAATGTAAACAGCATCAACTTGGCCTTGA
ATGCCACATGAAGAGAGAGCCCGGATGTGGAGGAGTGTAGATTATGTGGCACTGGAACATGGGTGGAGGGG-----ATTA
GTTCCACTTCTACTACTACTACTACTACTTAATTACCTTACTTAGCTGAGCATAACAAGGGAATTAGTCATGGGTCCACT
GCTGTCTGTCTCCCTCTTAGCACTTGACCCC-ATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGCTCTGCAC
ACTAGCGCCTACTCGATTAAGAAACCCCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCACAGAGCC
TAGCTAGCT----ACCTGCCAAGAGCTGCCCTGAACCCTAGCCAGTAGTAGCTTCCCGGAACACCGTCACCAGTAGCTCG
GTCTCACCTAGGTG----GGGAACAGTGACACAGAGCAGCTAGCTGCCTAGCCTAGCCAATGGCGAGCAAGCGGGCCACC
ACGCGGGAGCTCCGGGCGATGTACGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCATGGCGTGGTCGT
CGACGGTGACGATGAAGACGACGACACTGCCACCGCCCTGCCCCAGCTCTCCTTCGTCGACAACTTCAAAGGTGGGTGCG
GGTCG---GC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGCGGGACGCCGGGCGCCTCCTCCAGCTCCACC
TCGTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCGGCACAGGCGACGATGACTG
CGCGCTCTGGATGGACAGCATGGCCG---ATCATCAGCACGGCGCGGCCAGGTTTGGGTTCATGAACCCAGGGTCGGCCG
ATGTCGTCCCAGAAAGCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGGTAAGTACC
TACATCAAATTTCTCCTCCCTTGCATCACGACACATTTCTG------------AAACTTTGCATCTAGTCAATTTGAGTG
GGAAAAAAAACTGATAAGTTTCCTTCTGTTTAATAAGGGTGGTGAGGCGCAAGCAGCGGCGAAGAAGCAGTGTGGAGGAG
GCAGGAAGAGCAAGGCCAAAGTTGTCCCTACCAAGGATCCTCAGAGCGCTGTTGCAAAGGTAG----AAT--CAGCATGA
G-TCAATTTCTCCCTATTGCTGTGGTG-CAAGATTCTTTGCACTGCAAGAAAGTTGTTTCGA-CGAAGCCGAACTAATCC
ATGTTACCCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGTGAGAGGCTCAAAGTTCTGCAGGATCTTGTA
CCCAACGGCACGAAGGTGTGTACCATGACTTCTTCT-------------CATGCTTCAGCACGGTTTTTGTGTGAAAAAA
TGACC------TGGTCATTAGTTGCTAATTTTCTGAATGGAACCAACTCCTGTAGGTGGACATGGTCACCATGCTCGAGA
AGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTACGCGA-CGATCGGTCATCGATGCGTCGACTACTCTT
TCGACCCAATTCACATCTATGAACTACATACAGTCTC---ATGTCGGATCTATGAATTATAACCCGGTTCGCGCATATTC
GGTGTGTGTGC--GCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCGCCGGAGCTGTCCCAAGTG
AAGACCGCGCTGGACGCCATCCTGTCTTCCCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTTTTAT-
CCAAGTTTTAGAT-GATCGCGGCGGCACGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCTCTGGAAAAATAC------
-------------ATGGCAGATCATGTTTTT-GCTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTTTTATG
TGATCGGGATTTGAAGTTCTGAGCACTGTAACTAGTCCAATAAAACC-------TAGATGAACATGATGTTACACAGCTT
AGTGAAACCTAGACAGGGTCCCGCCATCGCGTGCAATGAAAATAAAGTTGTTGTTTCTATTGAAACATAAAA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr3B_1
ATACAATTCTACATTGGTACC---TGGTTTCGTTAAGTCTGCGGCGAATTGCTGCGTGCAACTGTTGGTGATCTGCATTA
GTCGCTAATGAAGGTAAAGTTCATGTCAA----------ATATATTACAGTGAACACAAGAAACTAGAATCTGCTTCCAT
TAATTGGAAGTAGTAGGA-GATAGTTTCTTGTTTTTGACATAACTG------------TGC------TAGCAGGTGCCT-
AAACCTGACCAATATTTTGTAACCTAATAAATATTTAGAAGAAATATGTACTCTTGTACGGCGTACGGCTGATCA-----
--ATATACCAGGGAAATAATTGAAGTTACCCAATAT--AAGAACCTACACATATTTTTGCTTGGCTACCTTACACATGGG
C------TAGCTA----------CCTTACACATGGCAATGGAGGTTGAGAGGGAGGCTGCATTTATGGGAGCATGACATC
CCAGCTAATTATTTGCATTGCAGTTCCCCAGCAAGCTTGTTTCATGCATGCATGCTAAGCCTGAACTGAATTGAATACAA
GCTTGTCACAACGTCATCACCACCTAGCTCCCCTCCCCCTTGT---TTAACTAATGTAAACAGCATCAACTTGGCCTTGA
ATGCCACATGAAGAGAGAGCCCGGATGTGGAGGAGTGTAGATTATGTGGCACTGGAACATGGGTGGAGGGG-----ATTA
GTTCCACTTCTACTACTACTACTACTACTTAATTACCTTACTTAGCTGAGCATAACAAGGGAATTAGTCATGGGTCCACT
GCTGTCTGTCTCCCTCTTAGCACTTGACCCC-ATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGCTCTGCAC
ACTAGCGCCTACTCGATTAAGAAACCCCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCACAGAGCC
TAGCTAGCT----ACCTGCCAAGAGCTGCCCTGAACCCTAGCCAGTAGTAGCTTCCCGGAACACCGTCACCAGTAGCTCG
GTCTCACCTAGGTG----GGGAACAGTGACACAGAGCAGCTAGCTGCCTAGCCTAGCCAATGGCGAGCAAGCGGGCCACC
ACGCGGGAGCTCCGGGCGATGTACGACGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCATGGCGTGGTCGT
CGACGGTGACGATGAAGACGACGACACTGCCACCGCCCTGCCCCAGCTCTCCTTCGTCGACAACTTCAAAGGTGGGTGCG
GGTCG---GC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGCGGGACGCCGGGCGCCTCCTCCAGCTCCACC
TCGTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCGGCACAGGCGACGATGACTG
CGCGCTCTGGATGGACAGCATGGCCG---ATCATCAGCACGGCGCGGCCAGGTTTGGGTTCATGAACCCAGGGTCGGCCG
ATGTCGTCCCAGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGGTAAGTACC
TACATCAAATTTCTCCTCCCTTGCATCACGACACATTTCTG------------AAACTTTGCATCTAGTCAATTTGAGTG
GGAAAAAAAACTGATAAGTTTCCTTCTGTTTAATAAGGGTGGTGAGGCGCAAGCAGCGGCGAAGAAGCAGTGTGGAGGAG
GCAGGAAGAGCAAGGCCAAAGTTGTCCCTACCAAGGATCCTCAGAGCGCTGTTGCAAAGGTAG----AAT--CAGCATGA
G-TCAATTTCTCCCTATTGCTGTGGTG-CAAGATTCTTTGCACTGCAAGAAAGTTGTTTCGA-CGAAGCCGAACTAATCC
ATGTTACCCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGTGAGAGGCTCAAAGTTCTGCAGGATCTTGTA
CCCAACGGCACGAAGGTGTGTACCATGACTTCTTCT-------------CATGCTTCAGCACGGTTTTTGTGTGAAAAAA
TGACC------TGGTCATTAGTTGCTAATTTTCTGAATGGAACCAACTCCTGTAGGTGGACATGGTCACCATGCTCGAGA
AGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTACGCGA-CGATCGGTCATCGATGCGTCGACTACTCTT
TCGACCCAATTCACATCTATGAACTACATACAGTCTC---ATGTCGGATCTATGAATTATAACCCGGTTCGCGCATATTC
GGTGTGTGTGC--GCAGGTGTTGGCGACCGACGAGTTCTGGCCGGTGCAAGGAGGGAAGGCGCCGGTGCTGTCCCAAGTG
AAGACCGCGCTGGACGCCATCCTGTCTTCCCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTTTTAT-
CCAAGTTTTAGAT-GATCGCGGCGGCACGTGTAAGATCAGAAAAGAAAAGAGAGCACAAGCTCTGGAAAAATAC------
-------------ATGGCAGATCATGTTTTT-GCTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTTTTATG
TGATCGGGATTTGAAGTTCTGAGCACTGTAACTAGTCCAATAAAACC-------TAGATGAACATGATGTTACACAGCTT
AGTGAAACCTAGACAGGGTCCCGCCATCGCGTGCAATGAAAATAAAGTTGTTGTTTCTATTGAAACATAAAA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>chr3A_97
--------------------------------------------------------------------------------
----------------AAGTTCGTGTCCATACAAAAAATATATATTACAGTGAACACAAGAAACTATAATTTGCTTCCAG
----TGGAAGTAGTAGGA-GATAGTTTCTTGTTTTGGATGTAACCATTATTGGTGCTCTGC------TAGCAGGTACCT-
AAACCGGACCAATATTTTGTAACCT---AAATATATAGAAGAAATATGTACTCTCGTACGGCGTACGGCTGATCA-----
--ATATACCAGGGAAATAATTGAAGCTACCC--TAG--AAGAACCTACACATATTTTTGCTTGGCTACCTTACACATGGG
C------TAGCTAGCTACAGCTTAGCTAGCCATGGCAATGGAGGTTGAGAGG----CTGCATTTATGGGAGCATGACATC
CCAGCTAATTATTTGCATTGCAGTTCCCCAGCAAGCTAGCTTGTTTCATGCATGCTAACCTTC-----AATTGAATACAA
GCTTGTCACAACGTCATCACCACCT---------------TGT---TTAACTAATGTAAACAGCATCAACTTGGCCTTGA
ATGCCACGTGAAGAGAGAGCCCGGATGTGGAGGAGTGTAGATTATGTGGCACTGGAACATGGGGGGAGGGGCTAGGGTTA
GCTCCACTTCTACTG-------TACTACTTAATCACCTTACTTAGCTGAGCATAACAAGGGAATTAATCATGGGTCCACT
GCTGTCTGTCTCCCTCTTTGCACTTGACCCCTATATTCCACTGACAGCTCAAGACCTTGCTGGCTCATTAAGCTC--CAC
ACTAGCGCCTACTCGATTAAGAAACCGCTCACTCTATATAAGTAGCCGCATGCTTGCACGTCTCATGCATTCACAGAGCT
TAGCTAGCT----AGCTGCCAAGAGCTGCCCTGAACCCTAGCTAGTAGTAGCTTCCCGGAACACCGTCACCAGTAGCTCG
ATCTCACCTAGGTA----GGGAACAGTGACACAGAGCAGCAAGCTGCCTAG-CTAGCCAATGGCGTGCAAGCGGGCCACC
ACGCGGGAGCTCCGGGCGATGTACGATGACGAGCCCTCCTCCATGTCCCTCGAGCTCTTCGGCTACCACGGCGTGGTCGT
CGACGGTGATGATGAGGAGGGCGACACCGCCACCGCCCTCCCCCAGCTCTCCTTCGTCGATAACTTCAAAGGCGGGTGCG
GGTCAGCAGC---GGCGGACTACTACAGCTGGGCGTACAACGCCTCCGGTGGGACGCCCGGCGCCTCCTCCAGCTCCACT
TCTTCGGTGCTCAGCTTTGAGCATGCCGGCGGTGCCGGTCATCAGCTGGCTTATAATTCCAGCACAGGTGACGATGACTG
TGCGCTCTGGATGGACACCATGGCCG---ATCAGCATGGCGCTGCCAA---GTTTGGGTTCATGAACCCAGGGTCGGCCG
ATGTCGTCCCAGAAATCCAGGAGAGCAGCATCAAGCAGCCGGCCAAGTCTGCGCAGAAGCGCTCGAGCTCGGTAACTACC
TACATCAGATTAATTTTTTCTATGCATTCATGAGAATATGTTGTTACCTACACAAACTTTGCATCAAATCTATTTAAGTG
----AATAATCTGATCTGTGTTTATCTGTG----AAGGGTGGTGAGGCGCAAGCGGCGGTGAAGAAGCAGTGTGGAGGAG
GCAGGAAGAGCAAGGCCAAAGTTGTGCCTACAAAGGACCCTCAGAGCGTCGTTGCAAAGGTACATATACAGGCAGCATGG
A-TCAATTTCTCCCTATTGTTGTGGTGGCAAGATTCTTTGCACTGCAAGAAAATTGCTTCGA-CGAAGCCGAACTAATCC
AAGTTACTCGATCGATCATGGATCTTTAGGTCCGAAGAGAGCGCATCAGCGAGAGGCTCAAAGTTCTGCAGGATCTGGTC
CCCAATGGCACAAAGGTGCGTACCATGATTTCTTCT-------------CATGCCTCAGCACAGTTTTTGTGTGAAAAAA
TGACCTGGTCATGGTCATTAGTTGCTAATTTTCTGAATGAAACCAACTCGCGTAGGTGGACATGGTCACCATGCTCGAGA
AGGCAATCACCTATGTCAAGTTCCTGCAGCTGCAAGTCAAGGTATGCGG-CAATCGGTTATCAATGCGTCGACTACTCTT
TCGACCCAATTCACTTCTATGAACTACATGCAGTCTC---ATGTCTGATGTATGAATTATAACCCGGTTCGTGCATATTC
GGTGTGTTTGC--GCAGGTGCTGGCGACCGACGAGTTCTGGCCGGTGCAAGGGGGGAAGGCGCCGGAGCTCTCCCAAGTG
AAGACCGCCCTGGACGCCATCCTGTCTTCTCAGCAGCAACCCTAGGCCATGGATGCATGCATCCATGTTGAATTTTTTAC
CCAAGTTTTAGAT-GATCGCGG---CACGTGTAAGATCAGAACAGAAAAGAGAGCACAAGCTCTGTAAAAATAC------
-------------ATGGCAGATCATGTTTTTTGTTTCACTCCTTTTA---------GATCAATTCTCCTTGTTTTTTATG
TGATCGGGATTTGAAGTTCCGATCACTGTAACTAGTCCAATAAAACT-------TAGAGGAACATGATGTTACACAGCTT
AGTGAAACCTAGACAGGGTCCCGCCATCGCGTGCAACGAAAATAAA---GTTGTTTCTATTGAAACATAAAACCCT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>SNPs
---------------------SSS------S------S--------------------------S---------------
------S--S---S-------SS----S--S------SS---S---S-S-----S-------SS-------SS--S-S--
-S---------------SS----------------SSS-------------------S---SSSSSS------------S
--S------------S-SSS------SSS---------------S---------------S--------S-----SSSSS
SS--------S------------------SS-SSS-SS----------------------------S-------------
-SSSSSS-----S-------------------------------------------------------------------
-----------------------------------------------------------------S--------------
-------------------------------S-S--SSS--SSSSS----------------------------------
------------------------S--S-S--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------S--------
S--------SSSS----------------------------------------S--------------------------
--------------SSSS------------------------------------S-------------------------
S------SS--------------S--------------------------------------------------------
------S-------------------------------------------------------------------------
----------SSS-------------------------------------------------------------------
--------------------------------------------------------SS----------------------
----------------S---------SSS---------------------------------------------------
----------S---------------------------------------------------S------------S----
----------S-S---SS-SS--S---------------------------S--------------S-------------
---------------------------------------S----------------------------------------
------------------------------------------------------------------S--S----------
-S----S-----------S---------S-S----------SSS--S--S------------S----S--S---------
---------S---------SSS-S-S-----------------------------------------------------S
--------------------S---------S--S--SSSSSSSSSSSSS-------S-------S----S-S--SS----
--SS--------------S-------------S--S--------------------------------------------
-------------------------------------------------S-----S-------S-S-S---------SS-
--SS-SSSSS-SSS--------S-S-SS-------SSSSS-----------SSS-SS------SS---S-S------S--
--SS-S-S-SSSS------------------------------------------------S------------------
--------------------------S--------------------S--SS------S---------------------
-S-----------S-------S----S----------------------------------SSSSSSSS--SSSSSSSSS
SSSSSSSSSSSSS----SS----------------------------SSSSSSSSS------S--S-----S-SSS-S-S
-SSSS-SS--------S----------------------------S-SSSSSSS----S--S---------S--------
S-------------------------SS-S------SS-S---------S--------S--------S----S---SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_403
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------GCTGCCTTACACATGGG
CTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_1944
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GTGTAGGTCCGAAGAGAGCG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_406
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GCCTTACACATGGG
CTAGCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_2427
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CTCTCAGCAGCAACCCTAGG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>forward_2038
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------CGCACCATGATTCCTCCTCA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------
>reverse_3399
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TGATAGCGCAGCATCGTCAT----------------------
--------------------
